Citrus Sinensis ID: 010881

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
Protein Sequence
MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDCQKGW
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccEEHHHHHHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccEEEHHHHHHHHccccHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccccHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccEEEEcHHHHHHHHccc
Coil and Loop (DISEMBL)
MKQIKQIQSHLtvsgtlwdpfaVGKIIGfcsasdigdlshgyRLFVCLQYRTTFIWNTMIrgfaeknePIKAFALYKQMLrsdflpnnytfSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATcncmdparklfdmsvnrdVISWTSLINGYAKSGQISIARQMFdkmpeknaVSWSAMINGYVQVDLFKEALEHFNymqlcgfrpnhagIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETacsvfdsmpnrdvFAYTSLISGLANHDQSASAIELFMRMQlegvvpnesmseiygiepgvqhYGCLVDLLGRAGMLEAAKKVVRempiepdnYVLGALLNACRvhgdvdlgKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRgmednevrkvpgcslievDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKslcffddgnevateggslldcqkgw
Flexible Loop (DISEMBL)
MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSniyasteqwnGVEKVRrgmednevrkvpgcslievDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNevateggslldcqkgw
Low Complexity Region (SEG)
MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDCQKGW
Disordered region (IsUnstruct)
********SHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVAT************
Disordered Region (DISOPRED)
MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDC****
Disordered Region (DISEMBL)
********SHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDCQKGW
Disordered Region (DISPRO)
MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLD*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGGSLLDCQKGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	498	2.2.26 [Sep-21-2011]
Q9FJY7	620	Pentatricopeptide repeat-	yes	no	0.923	0.741	0.404	1e-107
Q9FI80	646	Pentatricopeptide repeat-	no	no	0.949	0.732	0.364	2e-98
Q9FG16	622	Pentatricopeptide repeat-	no	no	0.901	0.721	0.359	1e-94
Q9FND7	612	Putative pentatricopeptid	no	no	0.947	0.771	0.365	1e-94
Q9SIL5	534	Pentatricopeptide repeat-	no	no	0.921	0.859	0.355	4e-92
Q9SJG6	559	Pentatricopeptide repeat-	no	no	0.931	0.830	0.366	7e-90
Q683I9	573	Pentatricopeptide repeat-	no	no	0.861	0.748	0.379	1e-89
Q9LSB8	687	Putative pentatricopeptid	no	no	0.969	0.703	0.347	6e-89
O82380	738	Pentatricopeptide repeat-	no	no	0.877	0.592	0.362	1e-85
Q9LXF2	548	Pentatricopeptide repeat-	no	no	0.885	0.804	0.372	2e-85

>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 196/485 (40%), Positives = 298/485 (61%), Gaps = 25/485 (5%)

Query: 2   KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMI 60
           +++KQI + +  +G + D +A+ K + FC +S   D L +   +F       TF+WN MI
Sbjct: 28  EELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 87

Query: 61  RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
           RGF+  +EP ++  LY++ML S    N YTF  +L+AC++ S        HAQ+ +LG+E
Sbjct: 88  RGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYE 147

Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
           +  + +N L++ YA       A  LFD     D +SW S+I GY K+G++ IA  +F KM
Sbjct: 148 NDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKM 207

Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
            EKNA+SW+ MI+GYVQ D+ KEAL+ F+ MQ     P++  +  AL+ACA LGAL+QG+
Sbjct: 208 AEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGK 267

Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
           WIH+Y+++  I +D +LG  +IDMYAKCG +E A  VF ++  + V A+T+LISG A H 
Sbjct: 268 WIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHG 327

Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
               AI  FM MQ  G+ PN                         SM   Y ++P ++HY
Sbjct: 328 HGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHY 387

Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
           GC+VDLLGRAG+L+ AK+ ++EMP++P+  + GALL ACR+H +++LG+E  E L+    
Sbjct: 388 GCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDP 447

Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
            H G +V  +NI+A  ++W+   + RR M++  V KVPGCS I ++G   EF++G+R++ 
Sbjct: 448 YHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHP 507

Query: 457 LMEEI 461
            +E+I
Sbjct: 508 EIEKI 512

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1

 Score =  360 bits (923), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/516 (36%), Positives = 302/516 (58%), Gaps = 43/516 (8%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIG--DLSHGYRLFVCLQYRTTFIWNT 58
           ++ + QI +    SG + D  A  +I+ FC+ SD+   DL + +++F  +  R  F WNT
Sbjct: 36  IRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNT 95

Query: 59  MIRGFAEKNE--PIKAFALYKQMLRSDFL-PNNYTFSFILRACADTSCLFVGLICHAQVI 115
           +IRGF+E +E   + A  L+ +M+  +F+ PN +TF  +L+ACA T  +  G   H   +
Sbjct: 96  IIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLAL 155

Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLF-------DMSVNRD-------VISWTSLI 161
           + G+   +FV++ L+ +Y  C  M  AR LF       DM V  D       ++ W  +I
Sbjct: 156 KYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMI 215

Query: 162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA 221
           +GY + G    AR +FDKM +++ VSW+ MI+GY     FK+A+E F  M+    RPN+ 
Sbjct: 216 DGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYV 275

Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
            +V  L A + LG+L+ G W+H Y + +GI +D +LG+A+IDMY+KCG IE A  VF+ +
Sbjct: 276 TLVSVLPAISRLGSLELGEWLHLYAEDSGIRIDDVLGSALIDMYSKCGIIEKAIHVFERL 335

Query: 282 PNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE-------------------- 321
           P  +V  ++++I+G A H Q+  AI+ F +M+  GV P++                    
Sbjct: 336 PRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVEEGR 395

Query: 322 ----SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV 377
                M  + G+EP ++HYGC+VDLLGR+G+L+ A++ +  MPI+PD+ +  ALL ACR+
Sbjct: 396 RYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGACRM 455

Query: 378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS 437
            G+V++GK     L++      G +V LSN+YAS   W+ V ++R  M++ ++RK PGCS
Sbjct: 456 QGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCS 515

Query: 438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK 473
           LI++DGV+ EFV  + ++   +EI  +L  I   L+
Sbjct: 516 LIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLR 551

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1

 Score =  347 bits (890), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 172/478 (35%), Positives = 283/478 (59%), Gaps = 29/478 (6%)

Query: 4   IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-----LSHGYRLFVCLQYRTTFIWNT 58
           +K I   L  +  + D F   +++  C      +     L + Y +F  +Q    F++N 
Sbjct: 28  LKIIHGFLLRTHLISDVFVASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNL 87

Query: 59  MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
           +IR F+   EP KAF  Y QML+S   P+N TF F+++A ++  C+ VG   H+Q++R G
Sbjct: 88  LIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFG 147

Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
           +++  +V N L+H+YA C  +  A ++F     RDV+SWTS++ GY K G +  AR+MFD
Sbjct: 148 FQNDVYVENSLVHMYANCGFIAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFD 207

Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
           +MP +N  +WS MINGY + + F++A++ F +M+  G   N   +V  +++CA LGAL+ 
Sbjct: 208 EMPHRNLFTWSIMINGYAKNNCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEF 267

Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
           G   + YV ++ + +++ILGTA++DM+ +CG IE A  VF+ +P  D  +++S+I GLA 
Sbjct: 268 GERAYEYVVKSHMTVNLILGTALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAV 327

Query: 299 HDQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQ 334
           H  +  A+  F +M   G +P                         E+M + +GIEP ++
Sbjct: 328 HGHAHKAMHYFSQMISLGFIPRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLE 387

Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
           HYGC+VD+LGRAG L  A+  + +M ++P+  +LGALL AC+++ + ++ +     L++ 
Sbjct: 388 HYGCIVDMLGRAGKLAEAENFILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKV 447

Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGE 452
             +H G +VLLSNIYA   QW+ +E +R  M++  V+K PG SLIE+DG + +F  G+
Sbjct: 448 KPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGD 505

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1

 Score =  347 bits (890), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 182/498 (36%), Positives = 289/498 (58%), Gaps = 26/498 (5%)

Query: 2   KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
           K+++QI + L V GTL D   VG  +   + SD   L +  ++    +  T F  N+MIR
Sbjct: 20  KEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIR 79

Query: 62  GFAEKNEPIKAFALYKQMLRS--DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
              +   P K+F  Y+++L S  D  P+NYT +F+++AC        GL  H   IR G+
Sbjct: 80  AHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGF 139

Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
           ++   V  GL+ LYA   C+D   K+F+     D +  T+++   A+ G +  AR++F+ 
Sbjct: 140 DNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEG 199

Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
           MPE++ ++W+AMI+GY QV   +EAL  F+ MQL G + N   ++  L+AC  LGALDQG
Sbjct: 200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259

Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
           RW H+Y++RN I++ + L T ++D+YAKCG +E A  VF  M  ++V+ ++S ++GLA +
Sbjct: 260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319

Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
                 +ELF  M+ +GV PN                        +SM   +GIEP ++H
Sbjct: 320 GFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEH 379

Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
           YGCLVDL  RAG LE A  ++++MP++P   V  +LL+A R++ +++LG    + ++E  
Sbjct: 380 YGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELE 439

Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
             + G +VLLSNIYA +  W+ V  VR+ M+   VRK PGCS++EV+G V EF  G++++
Sbjct: 440 TANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSH 499

Query: 456 VLMEEIVLLLFGIDKHLK 473
               +I  +   I + L+
Sbjct: 500 PKYTQIDAVWKDISRRLR 517

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIL5|PP165_ARATH Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana GN=PCMP-E78 PE=2 SV=1

 Score =  338 bits (868), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 173/486 (35%), Positives = 276/486 (56%), Gaps = 27/486 (5%)

Query: 5   KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
           K+I + + + G     F V K++ FC    I D+ +  RLF  +     F++N++IR + 
Sbjct: 27  KKINASIIIHGLSQSSFMVTKMVDFCDK--IEDMDYATRLFNQVSNPNVFLYNSIIRAYT 84

Query: 65  EKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYD 123
             +       +YKQ+LR  F LP+ +TF F+ ++CA     ++G   H  + + G   + 
Sbjct: 85  HNSLYCDVIRIYKQLLRKSFELPDRFTFPFMFKSCASLGSCYLGKQVHGHLCKFGPRFHV 144

Query: 124 FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK 183
              N L+ +Y   + +  A K+FD    RDVISW SL++GYA+ GQ+  A+ +F  M +K
Sbjct: 145 VTENALIDMYMKFDDLVDAHKVFDEMYERDVISWNSLLSGYARLGQMKKAKGLFHLMLDK 204

Query: 184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH 243
             VSW+AMI+GY  +  + EA++ F  MQL G  P+   ++  L +CA LG+L+ G+WIH
Sbjct: 205 TIVSWTAMISGYTGIGCYVEAMDFFREMQLAGIEPDEISLISVLPSCAQLGSLELGKWIH 264

Query: 244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSA 303
            Y +R G      +  A+I+MY+KCG I  A  +F  M  +DV +++++ISG A H  + 
Sbjct: 265 LYAERRGFLKQTGVCNALIEMYSKCGVISQAIQLFGQMEGKDVISWSTMISGYAYHGNAH 324

Query: 304 SAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHYGCL 339
            AIE F  MQ   V PN                        + M + Y IEP ++HYGCL
Sbjct: 325 GAIETFNEMQRAKVKPNGITFLGLLSACSHVGMWQEGLRYFDMMRQDYQIEPKIEHYGCL 384

Query: 340 VDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE 399
           +D+L RAG LE A ++ + MP++PD+ + G+LL++CR  G++D+    ++ LVE   +  
Sbjct: 385 IDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPEDM 444

Query: 400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLME 459
           G +VLL+NIYA   +W  V ++R+ + +  ++K PG SLIEV+ +V EFVSG+ +     
Sbjct: 445 GNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFWT 504

Query: 460 EIVLLL 465
           EI ++L
Sbjct: 505 EISIVL 510

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJG6|PP200_ARATH Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E75 PE=2 SV=1

 Score =  331 bits (849), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 180/491 (36%), Positives = 280/491 (57%), Gaps = 27/491 (5%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
           M+++KQI + L  +G + D     +++ FC AS   D+++ Y +F  + ++  F+WNT+I
Sbjct: 38  MRELKQIHASLIKTGLISDTVTASRVLAFCCASP-SDMNYAYLVFTRINHKNPFVWNTII 96

Query: 61  RGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
           RGF+  + P  A +++  ML S     P   T+  + +A         G   H  VI+ G
Sbjct: 97  RGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEG 156

Query: 119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
            E   F+ N +LH+Y TC C+  A ++F   +  DV++W S+I G+AK G I  A+ +FD
Sbjct: 157 LEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFD 216

Query: 179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
           +MP++N VSW++MI+G+V+   FK+AL+ F  MQ    +P+   +V  L ACA+LGA +Q
Sbjct: 217 EMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQ 276

Query: 239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
           GRWIH Y+ RN  EL+ I+ TA+IDMY KCGCIE   +VF+  P + +  + S+I GLAN
Sbjct: 277 GRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLAN 336

Query: 299 HDQSASAIELFMRMQLEGVVPNES------------------------MSEIYGIEPGVQ 334
           +     A++LF  ++  G+ P+                          M E Y IEP ++
Sbjct: 337 NGFEERAMDLFSELERSGLEPDSVSFIGVLTACAHSGEVHRADEFFRLMKEKYMIEPSIK 396

Query: 335 HYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVER 394
           HY  +V++LG AG+LE A+ +++ MP+E D  +  +LL+ACR  G+V++ K   + L + 
Sbjct: 397 HYTLMVNVLGGAGLLEEAEALIKNMPVEEDTVIWSSLLSACRKIGNVEMAKRAAKCLKKL 456

Query: 395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERT 454
             D    +VLLSN YAS   +    + R  M++ ++ K  GCS IEVD  V EF+S   T
Sbjct: 457 DPDETCGYVLLSNAYASYGLFEEAVEQRLLMKERQMEKEVGCSSIEVDFEVHEFISCGGT 516

Query: 455 NVLMEEIVLLL 465
           +    EI  LL
Sbjct: 517 HPKSAEIYSLL 527

Arabidopsis thaliana (taxid: 3702)

>sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1

 Score =  330 bits (847), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 178/469 (37%), Positives = 278/469 (59%), Gaps = 40/469 (8%)

Query: 53  TFIWNTMIRGF------AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFV 106
           +F+WN +IR         +++ PI   ++Y +M      P+ +TF F+L +  +   L +
Sbjct: 24  SFLWNIIIRAIVHNVSSPQRHSPI---SVYLRMRNHRVSPDFHTFPFLLPSFHNPLHLPL 80

Query: 107 GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK 166
           G   HAQ++  G +   FV   LL++Y++C  +  A+++FD S ++D+ +W S++N YAK
Sbjct: 81  GQRTHAQILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDDSGSKDLPAWNSVVNAYAK 140

Query: 167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-----FRPNHA 221
           +G I  AR++FD+MPE+N +SWS +INGYV    +KEAL+ F  MQL        RPN  
Sbjct: 141 AGLIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEF 200

Query: 222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM 281
            +   L+AC  LGAL+QG+W+HAY+D+  +E+DI+LGTA+IDMYAKCG +E A  VF+++
Sbjct: 201 TMSTVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNAL 260

Query: 282 -PNRDVFAYTSLISGLANHDQSASAIELFMRMQL-EGVVPN------------------- 320
              +DV AY+++I  LA +  +    +LF  M   + + PN                   
Sbjct: 261 GSKKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINE 320

Query: 321 -----ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNAC 375
                + M E +GI P +QHYGC+VDL GR+G+++ A+  +  MP+EPD  + G+LL+  
Sbjct: 321 GKSYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGS 380

Query: 376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPG 435
           R+ GD+   +  ++ L+E    + G +VLLSN+YA T +W  V+ +R  ME   + KVPG
Sbjct: 381 RMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPG 440

Query: 436 CSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEV 484
           CS +EV+GVV EFV G+ +    E I  +L  I + L+   +  D  EV
Sbjct: 441 CSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEV 489

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930 OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2

 Score =  328 bits (841), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 177/509 (34%), Positives = 280/509 (55%), Gaps = 26/509 (5%)

Query: 5   KQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFA 64
           K++  H+   G   + +    ++   S   + D++ G     C +    F WN MI G+ 
Sbjct: 155 KKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKE--DVFSWNLMISGYN 212

Query: 65  EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF 124
              E  ++  L  +M R+   P + T   +L AC+      +    H  V     E    
Sbjct: 213 RMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEYVSECKTEPSLR 272

Query: 125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN 184
           + N L++ YA C  MD A ++F     RDVISWTS++ GY + G + +AR  FD+MP ++
Sbjct: 273 LENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRD 332

Query: 185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
            +SW+ MI+GY++   F E+LE F  MQ  G  P+   +V  LTACA LG+L+ G WI  
Sbjct: 333 RISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKT 392

Query: 245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
           Y+D+N I+ D+++G A+IDMY KCGC E A  VF  M  RD F +T+++ GLAN+ Q   
Sbjct: 393 YIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQE 452

Query: 305 AIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLV 340
           AI++F +MQ   + P++                         M   + IEP + HYGC+V
Sbjct: 453 AIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHYGCMV 512

Query: 341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG 400
           D+LGRAG+++ A +++R+MP+ P++ V GALL A R+H D  + +   + ++E   D+  
Sbjct: 513 DMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEPDNGA 572

Query: 401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE 460
           V+ LL NIYA  ++W  + +VRR + D  ++K PG SLIEV+G   EFV+G+++++  EE
Sbjct: 573 VYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVNGFAHEFVAGDKSHLQSEE 632

Query: 461 IVLLLFGIDKHLKSLCFFDDGNEVATEGG 489
           I + L  + +      +  D +E+  E G
Sbjct: 633 IYMKLEELAQESTFAAYLPDTSELLFEAG 661

Arabidopsis thaliana (taxid: 3702)

>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1

 Score =  317 bits (813), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 169/466 (36%), Positives = 266/466 (57%), Gaps = 29/466 (6%)

Query: 36  GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
           GDL    ++F  ++ +    WN+MI GF +K  P KA  L+K+M   D   ++ T   +L
Sbjct: 180 GDLDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVL 239

Query: 96  RACADTSCLFVGL-ICHAQVIRLGWESYDFVL-NGLLHLYATCNCMDPARKLFDMSVNRD 153
            ACA    L  G  +C    I     + +  L N +L +Y  C  ++ A++LFD    +D
Sbjct: 240 SACAKIRNLEFGRQVC--SYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKD 297

Query: 154 VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL 213
            ++WT++++GYA S     AR++ + MP+K+ V+W+A+I+ Y Q     EAL  F+ +QL
Sbjct: 298 NVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQL 357

Query: 214 -CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE 272
               + N   +V  L+ACA +GAL+ GRWIH+Y+ ++GI ++  + +A+I MY+KCG +E
Sbjct: 358 QKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLE 417

Query: 273 TACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN------------ 320
            +  VF+S+  RDVF ++++I GLA H     A+++F +MQ   V PN            
Sbjct: 418 KSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVFCACS 477

Query: 321 ------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL 368
                         M   YGI P  +HY C+VD+LGR+G LE A K +  MPI P   V 
Sbjct: 478 HTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVW 537

Query: 369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN 428
           GALL AC++H +++L +     L+E    ++G HVLLSNIYA   +W  V ++R+ M   
Sbjct: 538 GALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKHMRVT 597

Query: 429 EVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
            ++K PGCS IE+DG++ EF+SG+  + + E++   L  + + LKS
Sbjct: 598 GLKKEPGCSSIEIDGMIHEFLSGDNAHPMSEKVYGKLHEVMEKLKS 643

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXF2|PP385_ARATH Pentatricopeptide repeat-containing protein At5g15300 OS=Arabidopsis thaliana GN=PCMP-E40 PE=2 SV=2

 Score =  317 bits (811), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 187/502 (37%), Positives = 273/502 (54%), Gaps = 61/502 (12%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
           ++ +KQI + + V+G + +   VG++I   S S  G L + ++LF  +      I N ++
Sbjct: 25  IRTLKQIHASMVVNGLMSNLSVVGELIYSASLSVPGALKYAHKLFDEIPKPDVSICNHVL 84

Query: 61  RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
           RG A+  +P K  +LY +M +    P+ YTF+F+L+AC+       G   H +V+R G+ 
Sbjct: 85  RGSAQSMKPEKTVSLYTEMEKRGVSPDRYTFTFVLKACSKLEWRSNGFAFHGKVVRHGFV 144

Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
             ++V N L+  +A C  +  A +LFD S     ++W+S+ +GYAK G+I  A ++FD+M
Sbjct: 145 LNEYVKNALILFHANCGDLGIASELFDDSAKAHKVAWSSMTSGYAKRGKIDEAMRLFDEM 204

Query: 181 P-------------------------------EKNAVSWSAMINGYVQVDLFKEALEHFN 209
           P                               EK+ V+W+AMI+GYV     KEAL  F 
Sbjct: 205 PYKDQVAWNVMITGCLKCKEMDSARELFDRFTEKDVVTWNAMISGYVNCGYPKEALGIFK 264

Query: 210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGT----AIIDM 264
            M+  G  P+   I+  L+ACA LG L+ G+ +H Y+ +   +   I +GT    A+IDM
Sbjct: 265 EMRDAGEHPDVVTILSLLSACAVLGDLETGKRLHIYILETASVSSSIYVGTPIWNALIDM 324

Query: 265 YAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES-- 322
           YAKCG I+ A  VF  + +RD+  + +LI GLA H    S IE+F  MQ   V PNE   
Sbjct: 325 YAKCGSIDRAIEVFRGVKDRDLSTWNTLIVGLALHHAEGS-IEMFEEMQRLKVWPNEVTF 383

Query: 323 ----------------------MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP 360
                                 M ++Y IEP ++HYGC+VD+LGRAG LE A   V  M 
Sbjct: 384 IGVILACSHSGRVDEGRKYFSLMRDMYNIEPNIKHYGCMVDMLGRAGQLEEAFMFVESMK 443

Query: 361 IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK 420
           IEP+  V   LL AC+++G+V+LGK   E L+    D  G +VLLSNIYAST QW+GV+K
Sbjct: 444 IEPNAIVWRTLLGACKIYGNVELGKYANEKLLSMRKDESGDYVLLSNIYASTGQWDGVQK 503

Query: 421 VRRGMEDNEVRKVPGCSLIEVD 442
           VR+  +D  V+K  G SLIE D
Sbjct: 504 VRKMFDDTRVKKPTGVSLIEED 525

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
225466196	537	PREDICTED: pentatricopeptide repeat-cont	0.969	0.899	0.706	0.0
296085795	512	unnamed protein product [Vitis vinifera]	0.969	0.943	0.706	0.0
227462996	532	pentatricopeptide repeat protein [Gossyp	0.963	0.902	0.650	0.0
224134663	540	predicted protein [Populus trichocarpa]	0.961	0.887	0.629	0.0
255570475	491	pentatricopeptide repeat-containing prot	0.889	0.902	0.649	1e-180
225425100	622	PREDICTED: pentatricopeptide repeat-cont	0.949	0.760	0.398	1e-111
413939596	524	hypothetical protein ZEAMMB73_269656 [Ze	0.819	0.778	0.472	1e-110
147832325	622	hypothetical protein VITISV_030261 [Viti	0.949	0.760	0.396	1e-110
242063604	514	hypothetical protein SORBIDRAFT_04g03830	0.845	0.819	0.449	1e-109
296088765	595	unnamed protein product [Vitis vinifera]	0.947	0.793	0.381	1e-107

>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera]

 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/507 (70%), Positives = 410/507 (80%), Gaps = 24/507 (4%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
           M  IKQIQSHLTVSGTL+DPFA G+II FC+ S  GD+SH Y LF+ L  RT+FIWNTM+
Sbjct: 26  MAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTML 85

Query: 61  RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
           R F +K EP    +LYK ML + FLPNNYTFSF+L+ACA  S L  G++ HAQ +RLGWE
Sbjct: 86  RAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWE 145

Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
           +YDFV NGLLHLYA+CNCMD AR+LFD SVNRDV++WT++INGYAKSGQ+ +ARQ+FD+M
Sbjct: 146 AYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEM 205

Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
           PEKNAVSWSAMI GY Q+ LF+EALE FN MQ+ GFRPNH  IVGALTACAFLGALDQGR
Sbjct: 206 PEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGR 265

Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
           WIHAYVDRN + LD ILGTA+IDMYAKCGC+ETAC VFD M +RDVFA+TSLISGLANH 
Sbjct: 266 WIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHG 325

Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
            SA+AIE+F RMQ EGV PNE                        SM+ IYGIEP VQHY
Sbjct: 326 HSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHY 385

Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
           GCLVDLLGRAGMLE AK+VVREMP+EPD+YVLGALLNACRVHGDV+LGKETVE L ERSL
Sbjct: 386 GCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSL 445

Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
           DH GVHVLLSN+YAS  QW  V KVR+GME+ +V+KVPGCSLIEVDG V EFV+G+ ++V
Sbjct: 446 DHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHV 505

Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNE 483
            M+EIVLLL GIDKHLKSL   DD N+
Sbjct: 506 FMDEIVLLLLGIDKHLKSLWSEDDDND 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]

 Score =  745 bits (1924), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/507 (70%), Positives = 410/507 (80%), Gaps = 24/507 (4%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
           M  IKQIQSHLTVSGTL+DPFA G+II FC+ S  GD+SH Y LF+ L  RT+FIWNTM+
Sbjct: 1   MAHIKQIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTML 60

Query: 61  RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
           R F +K EP    +LYK ML + FLPNNYTFSF+L+ACA  S L  G++ HAQ +RLGWE
Sbjct: 61  RAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLLQACAQLSDLSFGILLHAQAVRLGWE 120

Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
           +YDFV NGLLHLYA+CNCMD AR+LFD SVNRDV++WT++INGYAKSGQ+ +ARQ+FD+M
Sbjct: 121 AYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEM 180

Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
           PEKNAVSWSAMI GY Q+ LF+EALE FN MQ+ GFRPNH  IVGALTACAFLGALDQGR
Sbjct: 181 PEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQGR 240

Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
           WIHAYVDRN + LD ILGTA+IDMYAKCGC+ETAC VFD M +RDVFA+TSLISGLANH 
Sbjct: 241 WIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANHG 300

Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
            SA+AIE+F RMQ EGV PNE                        SM+ IYGIEP VQHY
Sbjct: 301 HSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQHY 360

Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
           GCLVDLLGRAGMLE AK+VVREMP+EPD+YVLGALLNACRVHGDV+LGKETVE L ERSL
Sbjct: 361 GCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETVECLAERSL 420

Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
           DH GVHVLLSN+YAS  QW  V KVR+GME+ +V+KVPGCSLIEVDG V EFV+G+ ++V
Sbjct: 421 DHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAVFEFVAGDMSHV 480

Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGNE 483
            M+EIVLLL GIDKHLKSL   DD N+
Sbjct: 481 FMDEIVLLLLGIDKHLKSLWSEDDDND 507

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum] gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]

 Score =  689 bits (1777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/506 (65%), Positives = 396/506 (78%), Gaps = 26/506 (5%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
           M QIKQ+ SHL VS +  DPFA GKII   + S   D+SH Y+LF+ L +RTTFIWNT+I
Sbjct: 23  MSQIKQMHSHLIVSASRLDPFAAGKIISLFAVSSNADISHAYKLFLSLPHRTTFIWNTII 82

Query: 61  RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
           R F EKNE   A +LYK ML++ FLPNNYTFSF+LRAC D S   VGL  HAQVI+LGWE
Sbjct: 83  RIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRACTDNSP--VGLASHAQVIKLGWE 140

Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
           SYDFVLNGL+HLYA  + ++ ARKLFD+S  RDVI+WT+LINGY KSG +  AR++FD+M
Sbjct: 141 SYDFVLNGLIHLYANWSSVEAARKLFDVSTCRDVITWTALINGYVKSGHVEFARELFDQM 200

Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
           PE+N VSWSAMI GYV + +F+EALE FN +QL G RPNHAGIVGALTAC++LG+LD GR
Sbjct: 201 PERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPNHAGIVGALTACSYLGSLDHGR 260

Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
           WIHAYVDRNG ELD +LGTA++DMYAKCGCIE ACSVF+ MP++D FA+TSLISGLANH 
Sbjct: 261 WIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVFEKMPDKDAFAFTSLISGLANHG 320

Query: 301 QSASAIELFMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHY 336
           QSA AI+LF RMQ E V+PNE                         MS +YGIEPGVQHY
Sbjct: 321 QSADAIQLFGRMQSEKVIPNEVTFICVLSACSRMGLVDEGLRIFNCMSVVYGIEPGVQHY 380

Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
           GC+VDLLGRAG+LE AK++VREMP+EPD+YVLGALLN+CRVHGDV+LGKETVESLVER L
Sbjct: 381 GCMVDLLGRAGLLEEAKRLVREMPMEPDSYVLGALLNSCRVHGDVELGKETVESLVERGL 440

Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
           DH GVHVLLSN+YAS+ QW+ V KVR+ M   +V+KVPGCS IE+DG V EF++G+ + +
Sbjct: 441 DHGGVHVLLSNMYASSNQWDWVVKVRKEMGAKKVKKVPGCSSIEIDGSVSEFIAGDMSYL 500

Query: 457 LMEEIVLLLFGIDKHLKSLCFFDDGN 482
            +E+++L+L GID HLK L   DD N
Sbjct: 501 RVEDVMLVLLGIDNHLKFLLLADDTN 526

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa] gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]

 Score =  661 bits (1706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/505 (62%), Positives = 388/505 (76%), Gaps = 26/505 (5%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDI-GDLSHGYRLFVCLQYRTTFIWNTM 59
           + Q+KQIQSHLTV+ TL DP+A  KII   + S+    L +  RLF+CLQ ++TFIWNTM
Sbjct: 24  ISQLKQIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTM 83

Query: 60  IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
           ++ F EKNE ++AF+LYK ML S++LPNN+TFSF++RAC D   L +GL  H QV++ GW
Sbjct: 84  MQAFVEKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRACIDVFNLQMGLCFHGQVVKFGW 143

Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
           ESYDFV NGL+HLYA C  MD AR +FDMS+ RDV++WT LI+GY  SGQ+ IAR++FD+
Sbjct: 144 ESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDR 203

Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
           MPEKN VSW A+I GYV++  FKEALE F  MQ+ GFR N A IVGALTACAFLGALDQG
Sbjct: 204 MPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQG 263

Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
           RWIHAYV R+ + LD +LGTA+IDMYAKCGCIE ACSVFD M +RDV+A+T LISGLANH
Sbjct: 264 RWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLANH 323

Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
           D+S +AI+LF RMQ EGVVPN                        ESMS  Y IEP +QH
Sbjct: 324 DKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQH 383

Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
           YGCLVDLLGRAG +E AK+VVREMP++PD+Y LGALL+ACRVHGDV LG+E V+SLV+R 
Sbjct: 384 YGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQRC 443

Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTN 455
           LDH GVHVLLSN+YAS ++W    K+R+ MED  +RK+PGCS IEV+G VCEFV+G+R+ 
Sbjct: 444 LDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCSSIEVNGTVCEFVTGDRSY 503

Query: 456 VLMEEIVLLLFGIDKHLKSLCFFDD 480
            L E+I+ LLFGIDK LKSL F DD
Sbjct: 504 ALEEDIMFLLFGIDKQLKSL-FLDD 527

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570475|ref|XP_002526196.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534500|gb|EEF36200.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  637 bits (1642), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 304/468 (64%), Positives = 369/468 (78%), Gaps = 25/468 (5%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCS-ASDIGDLSHGYRLFVCLQYRTTFIWNTM 59
           + QIKQIQ+HLTVSGTL DP+A  KII FC+ +S+   LSH YRLF+ L++R+TFIWNT+
Sbjct: 23  ISQIKQIQTHLTVSGTLKDPYAAAKIISFCALSSNQFSLSHAYRLFLGLRHRSTFIWNTV 82

Query: 60  IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
           IR FAEKNEP KA  L+K ML S+FLPNNYT+SF+ +AC D + L++GL CH Q I+LGW
Sbjct: 83  IRAFAEKNEPRKAIMLFKNMLYSNFLPNNYTYSFLFKACTDLNNLYLGLACHCQSIKLGW 142

Query: 120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
           E YDFV NGL+H++A   CMD ARKLFD+S NRDVI+WT+LINGY ++GQ+ I R++FDK
Sbjct: 143 EFYDFVQNGLVHMFAIFGCMDSARKLFDLSSNRDVITWTALINGYVRAGQVLIGRELFDK 202

Query: 180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
           MPE+N+VSWSAMI GYV+V  F+EALE FN M + GF PNHAGIV A+ ACA LGALDQG
Sbjct: 203 MPERNSVSWSAMITGYVRVGFFEEALELFNAMLISGFWPNHAGIVCAINACASLGALDQG 262

Query: 240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
           RWIH Y+ RN ++LD ++G A+IDMYAKCGCIE ACS+F  + NRDV  YT LISGLANH
Sbjct: 263 RWIHCYIKRNRMDLDRVMGAALIDMYAKCGCIEIACSIFGELRNRDVHVYTCLISGLANH 322

Query: 300 DQSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQH 335
            QSA+A+ELF RM  EGVVPN                        E+MS+IYG EP VQH
Sbjct: 323 GQSATAVELFERMHSEGVVPNEVTFVSVLNACSRMGLVDKGLRIFENMSKIYGDEPQVQH 382

Query: 336 YGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS 395
           YGCLVDLLGRAG LE AKK+V+EMP++PD+YVLGALLNA RV+GDV+LG+ETVESL + S
Sbjct: 383 YGCLVDLLGRAGKLEEAKKLVKEMPMKPDSYVLGALLNASRVYGDVELGEETVESLAQLS 442

Query: 396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG 443
           LDH GVHV+LSN+YAS  +W+ V +VRRGM D +VRKVPGCSLI+VDG
Sbjct: 443 LDHSGVHVVLSNMYASANKWDEVARVRRGMGDKKVRKVPGCSLIKVDG 490

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Vitis vinifera]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 198/497 (39%), Positives = 308/497 (61%), Gaps = 24/497 (4%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
           M++++QI   +  +G + D     K++ FC++ + G L++   +F  +    TF+WNTMI
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90

Query: 61  RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
           RG++   EP +A  LY  ML      N YTF F+L+AC+  S L      HA +I++G+ 
Sbjct: 91  RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSALEETQQIHAHIIKMGFG 150

Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
           S  +  N LL++Y+    +  AR LFD    RD +SW S+I+GY K G+I +A ++F+ M
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210

Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
           PE+N +SW++MI+G V     KEAL  F+ MQ  G + ++  +V  L ACA LG LDQG+
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270

Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
           WIHAY+ ++ IE+D ILG  +IDMYAKCG +E A  VF  M  + V  +T++ISG A H 
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330

Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
           +   A+E FM+MQ  GV PN                        ESM  I+G +P ++HY
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390

Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
           GC+VDLLGRAG+L+ A++++  MP++P+  + GALLNAC +HG+++LGK+  + L++   
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450

Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
            H G ++ L++I+A+  +WN   +VRR M++  V K+PGCS+I V+G   EF++G+ ++ 
Sbjct: 451 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHP 510

Query: 457 LMEEIVLLLFGIDKHLK 473
            ++EI  +L  I + L+
Sbjct: 511 QIKEIDHMLEQIVERLR 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413939596|gb|AFW74147.1| hypothetical protein ZEAMMB73_269656 [Zea mays]

 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 215/455 (47%), Positives = 287/455 (63%), Gaps = 47/455 (10%)

Query: 54  FIWNTMIRGFAEKNEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCL------- 104
           F+ N ++R     + P+ A  L+ ++ R   DF PNNYTFSF+L+A AD+S         
Sbjct: 42  FLPNQLLRSLLPAH-PLGALRLFPRLRRIIPDFRPNNYTFSFLLKAAADSSAPPYLEPES 100

Query: 105 -----FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR---DVIS 156
                 +    HA  + L W+++ +V NGL+H YAT   +  AR+LF  +V     DV S
Sbjct: 101 PFGSHAIVPCLHALAVVLAWDAHAYVANGLIHAYATHGVLPAARRLFGGAVASRAADVCS 160

Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
           WTSL+   AK+G +  AR +FD MP +N V+WSAM++ YV    F +A+  F  M     
Sbjct: 161 WTSLLTACAKAGHVDEARALFDGMPRRNDVAWSAMLSAYVAAGSFGDAVRLFEDMLRSCV 220

Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYV---DRNGIELDIILGTAIIDMYAKCGCIET 273
           RPN A +VG LTAC  LGALDQGRW+HA +     +G+ +D ++ TA++DMYAKCG +ET
Sbjct: 221 RPNRAAVVGVLTACGALGALDQGRWVHALLVGGGGHGVAMDGVVATALVDMYAKCGSLET 280

Query: 274 ACSVFDSMP--NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE---------- 321
           A  VF + P   RDVFAYT++ISGL++H +   AI+LF +M +EGV PNE          
Sbjct: 281 ARQVFAAAPRGQRDVFAYTAMISGLSDHGRCGEAIDLFGQMLVEGVRPNEVTFICVLTAC 340

Query: 322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYV 367
                         SM  ++G+EPGV+HYGCLVD+LGRAG L  A + VR MP+ PD+YV
Sbjct: 341 GRAGLVGRAKEVFRSMGAVHGMEPGVEHYGCLVDVLGRAGQLADALEAVRSMPMRPDSYV 400

Query: 368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED 427
           LGALLNAC  HGDV+ G++ V  L E  LDH GVHV LSN+YA   +W  V KVRR ME+
Sbjct: 401 LGALLNACAAHGDVEAGEQVVRWLAELGLDHSGVHVQLSNMYAGWGKWEEVLKVRRDMEE 460

Query: 428 NEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIV 462
             V KVPGCS++EV GVVCEFV+G+R++ LM EI+
Sbjct: 461 RRVAKVPGCSMLEVGGVVCEFVAGDRSHPLMPEIM 495

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 197/497 (39%), Positives = 307/497 (61%), Gaps = 24/497 (4%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
           M++++QI   +  +G + D     K++ FC++ + G L++   +F  +    TF+WNTMI
Sbjct: 31  MEELRQIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMI 90

Query: 61  RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
           RG++   EP +A  LY  ML      N YTF F+L+AC+  S        HA +I++G+ 
Sbjct: 91  RGYSNSKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEETQQIHAHIIKMGFG 150

Query: 121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
           S  +  N LL++Y+    +  AR LFD    RD +SW S+I+GY K G+I +A ++F+ M
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210

Query: 181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
           PE+N +SW++MI+G V     KEAL  F+ MQ  G + ++  +V  L ACA LG LDQG+
Sbjct: 211 PERNIISWTSMISGCVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQGK 270

Query: 241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
           WIHAY+ ++ IE+D ILG  +IDMYAKCG +E A  VF  M  + V  +T++ISG A H 
Sbjct: 271 WIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIHG 330

Query: 301 QSASAIELFMRMQLEGVVPN------------------------ESMSEIYGIEPGVQHY 336
           +   A+E FM+MQ  GV PN                        ESM  I+G +P ++HY
Sbjct: 331 RGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEHY 390

Query: 337 GCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL 396
           GC+VDLLGRAG+L+ A++++  MP++P+  + GALLNAC +HG+++LGK+  + L++   
Sbjct: 391 GCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVDP 450

Query: 397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNV 456
            H G ++ L++I+A+  +WN   +VRR M++  V K+PGCS+I V+G   EF++G+ ++ 
Sbjct: 451 GHGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCSVISVNGTAHEFLAGDESHP 510

Query: 457 LMEEIVLLLFGIDKHLK 473
            ++EI  +L  I + L+
Sbjct: 511 QIKEIDHMLEQIVERLR 527

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242063604|ref|XP_002453091.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor] gi|241932922|gb|EES06067.1| hypothetical protein SORBIDRAFT_04g038305 [Sorghum bicolor]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 212/472 (44%), Positives = 288/472 (61%), Gaps = 51/472 (10%)

Query: 54  FIWNTMIRGFAEKNEPIKAFALYKQMLR--SDFLPNNYTFSFILRACADTSCL------- 104
           F+ N ++R     + P+ A  L+ ++ R   DF PNNYTFSF+L+A AD+S         
Sbjct: 40  FLPNQLLRSLIPAH-PLGALRLFPRLRRIFPDFRPNNYTFSFLLKAAADSSAPPSLGPDY 98

Query: 105 -----FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD---MSVNRDVIS 156
                 +    HA  + L W+++ +V NGL+H YAT   +  AR+LF+    S   DV S
Sbjct: 99  PFGAHAIVPSLHALAVVLAWDAHAYVANGLIHAYATHGVVPSARRLFEDALASRAADVCS 158

Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
           WTSL+   AK+GQ+  AR +FD MP +N V+WSAM++ YV    F +A+  F  M   G 
Sbjct: 159 WTSLLTACAKAGQVEEARALFDGMPRRNDVAWSAMLSAYVAAGSFDDAVRLFEDMLRSGV 218

Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYV------DRNGIELDIILGTAIIDMYAKCGC 270
           RPN A +VG L AC  LGALDQGRW+HA +            +D ++ TA++DMYAKCG 
Sbjct: 219 RPNRAAVVGVLAACGALGALDQGRWVHALLVSGTHGGDGATAMDGVVATALVDMYAKCGS 278

Query: 271 IETACSVFDSMP---NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE------ 321
           ++TA  VF +      RDVFAYT++ISGL++H +   AI+LF +MQ EGV PNE      
Sbjct: 279 LDTARQVFAAAAPRSQRDVFAYTAMISGLSDHGRCGEAIDLFGQMQAEGVRPNEVTFICV 338

Query: 322 ------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP 363
                             SM+ ++G+EPGV+HYGCLVD+LGRAG+L  A + VR M + P
Sbjct: 339 LTACGRAGLVGRAKEVFRSMAAVHGMEPGVEHYGCLVDVLGRAGLLAEAMETVRSMTMRP 398

Query: 364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR 423
           D YVLGALLNAC  HGDV+ G++ V  L E  LDH GVHV LSN+YA   +W  V KVRR
Sbjct: 399 DAYVLGALLNACAAHGDVEAGEQVVRWLAELGLDHSGVHVQLSNMYAGWSKWEEVLKVRR 458

Query: 424 GMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL 475
            M+  +V KVPGCS++EVDGV  EFV+G+R++  M+EI+  +  +   L+ L
Sbjct: 459 TMDQRKVAKVPGCSMLEVDGVASEFVAGDRSHPRMQEIMSAIRDLHGQLRQL 510

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 205/537 (38%), Positives = 307/537 (57%), Gaps = 65/537 (12%)

Query: 1   MKQIKQIQSHLTVSGTLWDPFA----VGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIW 56
           +K +KQI  H ++  T+  P A      ++   C+ S   D  +   L   L+     ++
Sbjct: 50  IKGLKQI--HASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLY 107

Query: 57  NTMIRGFA-EKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI 115
           N +IRG A   N+ I+   +YKQML    +P+NYT  F+L+ACA++  +  G   H Q I
Sbjct: 108 NAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAESRAVREGEEVHGQAI 167

Query: 116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG------- 168
           ++G  S  +V N L+ +YA C+ +  ARK+FD S  RD++SWT++I GY K G       
Sbjct: 168 KMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGVG 227

Query: 169 ---------------------------QISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
                                        + AR++F +MP KN VSW++MI+G  Q   F
Sbjct: 228 LYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQF 287

Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
           KE+L  F  MQ  G +P+   +V  L +CA LG L+ G+W+HAY+DRN I  D  +G A+
Sbjct: 288 KESLYMFRKMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNAL 347

Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN- 320
           +DMYAKCG I+ AC VF +M  +DV++YT++I GLA H Q   A++LF  M   G+ P+ 
Sbjct: 348 VDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDE 407

Query: 321 -----------------------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
                                  E MS IY + P ++HYGC+VDLLGRAG++  A++ +R
Sbjct: 408 VTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIR 467

Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
            MPIEPD +VLGALL AC++HG V+LG+  ++ + +     +G +VL+SNIY+S  +W  
Sbjct: 468 NMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRD 527

Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS 474
             K+R+ M++  + K PGCS IE+DGV+ EF  G++++  ++EI  LL  I  HLK+
Sbjct: 528 ALKLRKTMKERNLEKTPGCSSIELDGVIHEFQKGDKSHPKIKEIYKLLDEIMSHLKN 584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	498
TAIR|locus:1009023396	612	AT5G40405 "AT5G40405" [Arabido	0.640	0.521	0.373	2.4e-89
TAIR|locus:2161018	530	AT5G56310 "AT5G56310" [Arabido	0.640	0.601	0.349	2.2e-78
TAIR|locus:2121055	559	AT4G38010 "AT4G38010" [Arabido	0.325	0.289	0.417	6.2e-75
TAIR|locus:2154855	620	AT5G66520 "AT5G66520" [Arabido	0.640	0.514	0.421	2.2e-66
TAIR|locus:2159238	499	AT5G61800 "AT5G61800" [Arabido	0.672	0.671	0.323	6.8e-65
TAIR|locus:2094812	600	AT3G29230 "AT3G29230" [Arabido	0.391	0.325	0.370	7.1e-65
TAIR|locus:2045580	559	AT2G42920 [Arabidopsis thalian	0.817	0.728	0.351	4.7e-64
TAIR|locus:2195296	484	AT1G09190 "AT1G09190" [Arabido	0.638	0.657	0.307	6.1e-64
TAIR|locus:2150936	623	AT5G15340 [Arabidopsis thalian	0.630	0.504	0.288	8.2e-64
TAIR|locus:2080898	530	AT3G51320 [Arabidopsis thalian	0.624	0.586	0.312	8.8e-61

TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 2.4e-89, Sum P(2) = 2.4e-89
 Identities = 120/321 (37%), Positives = 190/321 (59%)

Query:     2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIR 61
             K+++QI + L V GTL D   VG  +   + SD   L +  ++    +  T F  N+MIR
Sbjct:    20 KEVRQIHAKLYVDGTLKDDHLVGHFVKAVALSDHKYLDYANQILDRSEKPTLFALNSMIR 79

Query:    62 GFAEKNEPIKAFALYKQMLRS--DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGW 119
                +   P K+F  Y+++L S  D  P+NYT +F+++AC        GL  H   IR G+
Sbjct:    80 AHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGF 139

Query:   120 ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDK 179
             ++   V  GL+ LYA   C+D   K+F+     D +  T+++   A+ G +  AR++F+ 
Sbjct:   140 DNDPHVQTGLISLYAELGCLDSCHKVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEG 199

Query:   180 MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG 239
             MPE++ ++W+AMI+GY QV   +EAL  F+ MQL G + N   ++  L+AC  LGALDQG
Sbjct:   200 MPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQG 259

Query:   240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH 299
             RW H+Y++RN I++ + L T ++D+YAKCG +E A  VF  M  ++V+ ++S ++GLA +
Sbjct:   260 RWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMN 319

Query:   300 DQSASAIELFMRMQLEGVVPN 320
                   +ELF  M+ +GV PN
Sbjct:   320 GFGEKCLELFSLMKQDGVTPN 340

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161018 AT5G56310 "AT5G56310" [Arabidopsis thaliana (taxid:3702)]

 Score = 518 (187.4 bits), Expect = 2.2e-78, Sum P(2) = 2.2e-78
 Identities = 114/326 (34%), Positives = 181/326 (55%)

Query:     1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
             +K +KQ   ++ ++G   D   V K I  CS  + G L + Y +F       T++ NTMI
Sbjct:    28 LKTLKQSHCYMIITGLNRDNLNVAKFIEACS--NAGHLRYAYSVFTHQPCPNTYLHNTMI 85

Query:    61 RGFAEKNEPIK---AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL 117
             R  +  +EP     A  +Y+++      P+ +TF F+L+     S ++ G   H QV+  
Sbjct:    86 RALSLLDEPNAHSIAITVYRKLWALCAKPDTFTFPFVLKIAVRVSDVWFGRQIHGQVVVF 145

Query:   118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF 177
             G++S   V+ GL+ +Y +C  +  ARK+FD  + +DV  W +L+ GY K G++  AR + 
Sbjct:   146 GFDSSVHVVTGLIQMYFSCGGLGDARKMFDEMLVKDVNVWNALLAGYGKVGEMDEARSLL 205

Query:   178 DKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA 235
             + MP   +N VSW+ +I+GY +     EA+E F  M +    P+   ++  L+ACA LG+
Sbjct:   206 EMMPCWVRNEVSWTCVISGYAKSGRASEAIEVFQRMLMENVEPDEVTLLAVLSACADLGS 265

Query:   236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISG 295
             L+ G  I +YVD  G+   + L  A+IDMYAK G I  A  VF+ +  R+V  +T++I+G
Sbjct:   266 LELGERICSYVDHRGMNRAVSLNNAVIDMYAKSGNITKALDVFECVNERNVVTWTTIIAG 325

Query:   296 LANHDQSASAIELFMRMQLEGVVPNE 321
             LA H   A A+ +F RM   GV PN+
Sbjct:   326 LATHGHGAEALAMFNRMVKAGVRPND 351

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2121055 AT4G38010 "AT4G38010" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 6.2e-75, Sum P(3) = 6.2e-75
 Identities = 68/163 (41%), Positives = 105/163 (64%)

Query:   159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC-GFR 217
             +LI+ Y K  Q+S A ++F ++ +K+ VSW++MI+G V  +  KEA++ F+ MQ   G +
Sbjct:   244 ALIDMYVKCEQLSDAMRVFGELEKKDKVSWNSMISGLVHCERSKEAIDLFSLMQTSSGIK 303

Query:   218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV 277
             P+   +   L+ACA LGA+D GRW+H Y+   GI+ D  +GTAI+DMYAKCG IETA  +
Sbjct:   304 PDGHILTSVLSACASLGAVDHGRWVHEYILTAGIKWDTHIGTAIVDMYAKCGYIETALEI 363

Query:   278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
             F+ + +++VF + +L+ GLA H     ++  F  M   G  PN
Sbjct:   364 FNGIRSKNVFTWNALLGGLAIHGHGLESLRYFEEMVKLGFKPN 406

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2154855 AT5G66520 "AT5G66520" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 135/320 (42%), Positives = 199/320 (62%)

Query:     2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD-LSHGYRLFVCLQYRTTFIWNTMI 60
             +++KQI + +  +G + D +A+ K + FC +S   D L +   +F       TF+WN MI
Sbjct:    28 EELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMI 87

Query:    61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
             RGF+  +EP ++  LY++ML S    N YTF  +L+AC++ S        HAQ+ +LG+E
Sbjct:    88 RGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYE 147

Query:   121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
             +  + +N L++ YA       A  LFD     D +SW S+I GY K+G++ IA  +F KM
Sbjct:   148 NDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKM 207

Query:   181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR 240
              EKNA+SW+ MI+GYVQ D+ KEAL+ F+ MQ     P++  +  AL+ACA LGAL+QG+
Sbjct:   208 AEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGK 267

Query:   241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD 300
             WIH+Y+++  I +D +LG  +IDMYAKCG +E A  VF ++  + V A+T+LISG A H 
Sbjct:   268 WIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHG 327

Query:   301 QSASAIELFMRMQLEGVVPN 320
                 AI  FM MQ  G+ PN
Sbjct:   328 HGREAISKFMEMQKMGIKPN 347

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

TAIR|locus:2159238 AT5G61800 "AT5G61800" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 6.8e-65, Sum P(2) = 6.8e-65
 Identities = 111/343 (32%), Positives = 189/343 (55%)

Query:    21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEP--IKAFALYKQ 78
             FA+  I    SAS    +S+   +F  +   +TF +NT+IR     +EP  + +   + +
Sbjct:    48 FAITSISPSASASK-EVVSYATSVFRFITNPSTFCFNTIIR-ICTLHEPSSLSSKRFFVE 105

Query:    79 MLRSDFLPNNYTFSFILRACADTSCLFVGLI--CHAQVIRLGWESYDFVLNGLLHLYATC 136
             M R    P+ +TF F+ +ACA      + L+   H Q +R G  S  F LN L+ +Y+  
Sbjct:   106 MRRRSVPPDFHTFPFVFKACAAKKNGDLTLVKTLHCQALRFGLLSDLFTLNTLIRVYSLI 165

Query:   137 NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYV 196
               +D A +LFD +  RDV+++  LI+G  K+ +I  AR++FD MP ++ VSW+++I+GY 
Sbjct:   166 APIDSALQLFDENPQRDVVTYNVLIDGLVKAREIVRARELFDSMPLRDLVSWNSLISGYA 225

Query:   197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII 256
             Q++  +EA++ F+ M   G +P++  IV  L+ACA  G   +G+ IH Y  R  + +D  
Sbjct:   226 QMNHCREAIKLFDEMVALGLKPDNVAIVSTLSACAQSGDWQKGKAIHDYTKRKRLFIDSF 285

Query:   257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEG 316
             L T ++D YAKCG I+TA  +F+   ++ +F + ++I+GLA H      ++ F +M   G
Sbjct:   286 LATGLVDFYAKCGFIDTAMEIFELCSDKTLFTWNAMITGLAMHGNGELTVDYFRKMVSSG 345

Query:   317 VVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM 359
             + P + ++ I  +  G  H G + +       + +   V REM
Sbjct:   346 IKP-DGVTFI-SVLVGCSHSGLVDEARNLFDQMRSLYDVNREM 386

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094812 AT3G29230 "AT3G29230" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 7.1e-65, Sum P(2) = 7.1e-65
 Identities = 73/197 (37%), Positives = 118/197 (59%)

Query:   127 NGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP--EKN 184
             N +L  YA C  M  A +LF+    R+ +SW++++ GY+K+G + +AR MFDKMP   KN
Sbjct:   220 NTMLDGYARCREMSKAFELFEKMPERNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKN 279

Query:   185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHA 244
              V+W+ +I GY +  L KEA    + M   G + + A ++  L AC   G L  G  IH+
Sbjct:   280 VVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACTESGLLSLGMRIHS 339

Query:   245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSAS 304
              + R+ +  +  +  A++DMYAKCG ++ A  VF+ +P +D+ ++ +++ GL  H     
Sbjct:   340 ILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKE 399

Query:   305 AIELFMRMQLEGVVPNE 321
             AIELF RM+ EG+ P++
Sbjct:   400 AIELFSRMRREGIRPDK 416

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2045580 AT2G42920 [Arabidopsis thaliana (taxid:3702)]

 Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
 Identities = 150/427 (35%), Positives = 244/427 (57%)

Query:     1 MKQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMI 60
             M+++KQI + L  +G + D     +++ FC AS   D+++ Y +F  + ++  F+WNT+I
Sbjct:    38 MRELKQIHASLIKTGLISDTVTASRVLAFCCASP-SDMNYAYLVFTRINHKNPFVWNTII 96

Query:    61 RGFAEKNEPIKAFALYKQMLRSD--FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG 118
             RGF+  + P  A +++  ML S     P   T+  + +A         G   H  VI+ G
Sbjct:    97 RGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVFKAYGRLGQARDGRQLHGMVIKEG 156

Query:   119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFD 178
              E   F+ N +LH+Y TC C+  A ++F   +  DV++W S+I G+AK G I  A+ +FD
Sbjct:   157 LEDDSFIRNTMLHMYVTCGCLIEAWRIFLGMIGFDVVAWNSMIMGFAKCGLIDQAQNLFD 216

Query:   179 KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ 238
             +MP++N VSW++MI+G+V+   FK+AL+ F  MQ    +P+   +V  L ACA+LGA +Q
Sbjct:   217 EMPQRNGVSWNSMISGFVRNGRFKDALDMFREMQEKDVKPDGFTMVSLLNACAYLGASEQ 276

Query:   239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN 298
             GRWIH Y+ RN  EL+ I+ TA+IDMY KCGCIE   +VF+  P + +  + S+I GLAN
Sbjct:   277 GRWIHEYIVRNRFELNSIVVTALIDMYCKCGCIEEGLNVFECAPKKQLSCWNSMILGLAN 336

Query:   299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE 358
             +     A++LF  ++  G+ P +S+S I G+     H G     + RA   E  + +  +
Sbjct:   337 NGFEERAMDLFSELERSGLEP-DSVSFI-GVLTACAHSG----EVHRAD--EFFRLMKEK 388

Query:   359 MPIEPD--NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN 416
               IEP   +Y L  ++N   V G   L +E  E+L+ +++  E   V+ S++ ++  +  
Sbjct:   389 YMIEPSIKHYTL--MVN---VLGGAGLLEEA-EALI-KNMPVEEDTVIWSSLLSACRKIG 441

Query:   417 GVEKVRR 423
              VE  +R
Sbjct:   442 NVEMAKR 448

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2195296 AT1G09190 "AT1G09190" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 6.1e-64, Sum P(2) = 6.1e-64
 Identities = 99/322 (30%), Positives = 170/322 (52%)

Query:     3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG 62
             ++ +I +HL           +   I  C +    D ++  R+F  +Q     ++N MI+ 
Sbjct:    19 RLPEIHAHLLRHFLHGSNLLLAHFISICGSLSNSDYAN--RVFSHIQNPNVLVFNAMIKC 76

Query:    63 FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY 122
             ++    P+++ + +  M       + YT++ +L++C+  S L  G   H ++IR G+   
Sbjct:    77 YSLVGPPLESLSFFSSMKSRGIWADEYTYAPLLKSCSSLSDLRFGKCVHGELIRTGFHRL 136

Query:   123 DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE 182
               +  G++ LY +   M  A+K+FD    R+V+ W  +I G+  SG +     +F +M E
Sbjct:   137 GKIRIGVVELYTSGGRMGDAQKVFDEMSERNVVVWNLMIRGFCDSGDVERGLHLFKQMSE 196

Query:   183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI 242
             ++ VSW++MI+   +    +EALE F  M   GF P+ A +V  L   A LG LD G+WI
Sbjct:   197 RSIVSWNSMISSLSKCGRDREALELFCEMIDQGFDPDEATVVTVLPISASLGVLDTGKWI 256

Query:   243 HAYVDRNGIELDII-LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQ 301
             H+  + +G+  D I +G A++D Y K G +E A ++F  M  R+V ++ +LISG A + +
Sbjct:   257 HSTAESSGLFKDFITVGNALVDFYCKSGDLEAATAIFRKMQRRNVVSWNTLISGSAVNGK 316

Query:   302 SASAIELFMRMQLEG-VVPNES 322
                 I+LF  M  EG V PNE+
Sbjct:   317 GEFGIDLFDAMIEEGKVAPNEA 338

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2150936 AT5G15340 [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 8.2e-64, Sum P(2) = 8.2e-64
 Identities = 95/329 (28%), Positives = 166/329 (50%)

Query:     5 KQIQSHLTVSGTLWDP--FAVGKIIGFCSASDIGDLSHGYRLF--VCLQYRTTFIWNTMI 60
             K++ + LT SG    P  +    +  F ++S  G++    +LF  + L  +    W T++
Sbjct:    26 KELHAVLTTSGLKKAPRSYLSNALFQFYASS--GEMVTAQKLFDEIPLSEKDNVDWTTLL 83

Query:    61 RGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE 120
               F+     + +  L+ +M R     ++ +   +   CA    L      H   +++G  
Sbjct:    84 SSFSRYGLLVNSMKLFVEMRRKRVEIDDVSVVCLFGVCAKLEDLGFAQQGHGVAVKMGVL 143

Query:   121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKM 180
             +   V N L+ +Y  C  +   +++F+    + V+SWT +++   K   +   R++F +M
Sbjct:   144 TSVKVCNALMDMYGKCGLVSEVKRIFEELEEKSVVSWTVVLDTVVKWEGLERGREVFHEM 203

Query:   181 PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGALDQG 239
             PE+NAV+W+ M+ GY+     +E LE    M   CG   N   +   L+ACA  G L  G
Sbjct:   204 PERNAVAWTVMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCSMLSACAQSGNLVVG 263

Query:   240 RWIHAYVDRN----GIEL---DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSL 292
             RW+H Y  +     G E    D+++GTA++DMYAKCG I+++ +VF  M  R+V  + +L
Sbjct:   264 RWVHVYALKKEMMMGEEASYDDVMVGTALVDMYAKCGNIDSSMNVFRLMRKRNVVTWNAL 323

Query:   293 ISGLANHDQSASAIELFMRMQLEGVVPNE 321
              SGLA H +    I++F +M  E V P++
Sbjct:   324 FSGLAMHGKGRMVIDMFPQMIRE-VKPDD 351

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080898 AT3G51320 [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 8.8e-61, Sum P(2) = 8.8e-61
 Identities = 99/317 (31%), Positives = 167/317 (52%)

Query:     6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAE 65
             Q+ + L  SG  WD     +++   S+S  GD S  Y + +       +  N + + +  
Sbjct:    40 QVHARLITSGNFWDSSWAIRLLK--SSSRFGDSS--YTVSIYRSIGKLYCANPVFKAYLV 95

Query:    66 KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFV 125
              + P +A   Y  +LR  F+P++YTF  ++     T C+  G +CH Q I+ G +    V
Sbjct:    96 SSSPKQALGFYFDILRFGFVPDSYTFVSLISCIEKTCCVDSGKMCHGQAIKHGCDQVLPV 155

Query:   126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA 185
              N L+H+Y  C  +D A+KLF     RD++SW S+I G  ++G +  A ++FD+MP+KN 
Sbjct:   156 QNSLMHMYTCCGALDLAKKLFVEIPKRDIVSWNSIIAGMVRNGDVLAAHKLFDEMPDKNI 215

Query:   186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY 245
             +SW+ MI+ Y+  +    ++  F  M   GF+ N + +V  L AC     L +GR +HA 
Sbjct:   216 ISWNIMISAYLGANNPGVSISLFREMVRAGFQGNESTLVLLLNACGRSARLKEGRSVHAS 275

Query:   246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA 305
             + R  +   +++ TA+IDMY KC  +  A  +FDS+  R+   +  +I     H +    
Sbjct:   276 LIRTFLNSSVVIDTALIDMYGKCKEVGLARRIFDSLSIRNKVTWNVMILAHCLHGRPEGG 335

Query:   306 IELFMRMQLEGVV-PNE 321
             +ELF  M + G++ P+E
Sbjct:   336 LELFEAM-INGMLRPDE 351

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	498
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-88
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-71
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-42
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-38
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-31
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-29
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-27
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-13
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-05
pfam01535	31	pfam01535, PPR, PPR repeat	8e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-05
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04
pfam01535	31	pfam01535, PPR, PPR repeat	5e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  287 bits (737), Expect = 3e-88
 Identities = 155/480 (32%), Positives = 240/480 (50%), Gaps = 62/480 (12%)

Query: 27  IGFCSA-----SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR 81
           +  C++       +G      ++F  ++ +    W  MI G+ +   P KA   Y  M +
Sbjct: 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382

Query: 82  SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP 141
            +  P+  T + +L ACA    L VG+  H    R G  SY  V N L+ +Y+ C C+D 
Sbjct: 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDK 442

Query: 142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF 201
           A                                ++F  +PEK+ +SW+++I G    +  
Sbjct: 443 AL-------------------------------EVFHNIPEKDVISWTSIIAGLRLNNRC 471

Query: 202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI 261
            EAL  F  M L   +PN   ++ AL+ACA +GAL  G+ IHA+V R GI  D  L  A+
Sbjct: 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530

Query: 262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
           +D+Y +CG +  A + F+S   +DV ++  L++G   H + + A+ELF RM   GV P+E
Sbjct: 531 LDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589

Query: 322 ------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR 357
                                   SM E Y I P ++HY C+VDLLGRAG L  A   + 
Sbjct: 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN 649

Query: 358 EMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG 417
           +MPI PD  V GALLNACR+H  V+LG+   + + E   +  G ++LL N+YA   +W+ 
Sbjct: 650 KMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDE 709

Query: 418 VEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCF 477
           V +VR+ M +N +   PGCS +EV G V  F++ + ++  ++EI  +L G  + +K+   
Sbjct: 710 VARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL 769

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  238 bits (609), Expect = 6e-71
 Identities = 135/450 (30%), Positives = 208/450 (46%), Gaps = 55/450 (12%)

Query: 36  GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
           G L    RLF  +  R    W T+I G  +     +AFAL+++M          TF  +L
Sbjct: 172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231

Query: 96  RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
           RA A       G   H  V++ G     FV   L+ +Y+ C                   
Sbjct: 232 RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC------------------- 272

Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
                       G I  AR +FD MPEK  V+W++M+ GY      +EAL  +  M+  G
Sbjct: 273 ------------GDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320

Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
              +       +   + L  L+  +  HA + R G  LDI+  TA++D+Y+K G +E A 
Sbjct: 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380

Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN--------------- 320
           +VFD MP +++ ++ +LI+G  NH +   A+E+F RM  EGV PN               
Sbjct: 381 NVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440

Query: 321 ---------ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGAL 371
                    +SMSE + I+P   HY C+++LLGR G+L+ A  ++R  P +P   +  AL
Sbjct: 441 LSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAAL 500

Query: 372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR 431
           L ACR+H +++LG+   E L     +    +V+L N+Y S+ +     KV   ++   + 
Sbjct: 501 LTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560

Query: 432 KVPGCSLIEVDGVVCEFVSGERTNVLMEEI 461
             P C+ IEV      F SG+R +    EI
Sbjct: 561 MHPACTWIEVKKQDHSFFSGDRLHPQSREI 590

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  160 bits (407), Expect = 3e-42
 Identities = 86/286 (30%), Positives = 135/286 (47%), Gaps = 31/286 (10%)

Query: 36  GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
           G+L H + +F  +  R  F WN ++ G+A+     +A  LY +ML +   P+ YTF  +L
Sbjct: 135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVL 194

Query: 96  RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
           R C     L  G   HA V+R G+E    V+N L+ +Y  C                   
Sbjct: 195 RTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC------------------- 235

Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
                       G +  AR +FD+MP ++ +SW+AMI+GY +     E LE F  M+   
Sbjct: 236 ------------GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283

Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
             P+   I   ++AC  LG    GR +H YV + G  +D+ +  ++I MY   G    A 
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343

Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
            VF  M  +D  ++T++ISG   +     A+E +  M+ + V P+E
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDE 389

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  148 bits (375), Expect = 4e-38
 Identities = 82/285 (28%), Positives = 136/285 (47%), Gaps = 32/285 (11%)

Query: 36  GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL 95
           GD+     +F  +  R    WN MI G+ E  E ++   L+  M      P+  T + ++
Sbjct: 236 GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVI 295

Query: 96  RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI 155
            AC       +G   H  V++ G+     V N L+ +Y +      A K+F     +D +
Sbjct: 296 SACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV 355

Query: 156 SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG 215
           SWT++I+GY K+G           +P+K                    ALE +  M+   
Sbjct: 356 SWTAMISGYEKNG-----------LPDK--------------------ALETYALMEQDN 384

Query: 216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETAC 275
             P+   I   L+ACA LG LD G  +H   +R G+   +++  A+I+MY+KC CI+ A 
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444

Query: 276 SVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN 320
            VF ++P +DV ++TS+I+GL  +++   A+  F +M L  + PN
Sbjct: 445 EVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPN 488

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  127 bits (321), Expect = 2e-31
 Identities = 85/294 (28%), Positives = 126/294 (42%), Gaps = 57/294 (19%)

Query: 157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
              ++  + K G +  AR++FD+MPE+N  SW  +I G V    ++EA   F  M   G 
Sbjct: 161 MNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220

Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
                  V  L A A LG+   G+ +H  V + G+  D  +  A+IDMY+KCG IE A  
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280

Query: 277 VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV-VPNESMSEIYGI------ 329
           VFD MP +   A+ S+++G A H  S  A+ L+  M+  GV +   + S +  I      
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLAL 340

Query: 330 -EPGVQ-HYG--------------CLVDLLGRAGMLEAAKKVVREMPIE----------- 362
            E   Q H G               LVDL  + G +E A+ V   MP +           
Sbjct: 341 LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400

Query: 363 -----------------------PDNYVLGALLNACRVHGDVDLGKETVESLVE 393
                                  P++    A+L+ACR  G  + G E  +S+ E
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  122 bits (307), Expect = 2e-29
 Identities = 76/269 (28%), Positives = 124/269 (46%), Gaps = 45/269 (16%)

Query: 159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP 218
           ++++ + + G++  A  +F KMPE++  SW+ ++ GY +   F EAL  ++ M   G RP
Sbjct: 126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRP 185

Query: 219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF 278
           +       L  C  +  L +GR +HA+V R G ELD+ +  A+I MY KCG + +A  VF
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245

Query: 279 DSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC 338
           D MP RD  ++ ++ISG   + +    +ELF  M                          
Sbjct: 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTM-------------------------- 279

Query: 339 LVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH 398
                             RE+ ++PD   + ++++AC + GD  LG+E    +V+     
Sbjct: 280 ------------------RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV 321

Query: 399 E-GVHVLLSNIYASTEQWNGVEKVRRGME 426
           +  V   L  +Y S   W   EKV   ME
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRME 350

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  115 bits (289), Expect = 3e-27
 Identities = 83/327 (25%), Positives = 146/327 (44%), Gaps = 48/327 (14%)

Query: 33  SDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS 92
           S  GD+     +F  +  +TT  WN+M+ G+A      +A  LY +M  S    + +TFS
Sbjct: 270 SKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFS 329

Query: 93  FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR 152
            ++R  +  + L      HA +IR G+                                 
Sbjct: 330 IMIRIFSRLALLEHAKQAHAGLIRTGFPL------------------------------- 358

Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ 212
           D+++ T+L++ Y+K G++  AR +FD+MP KN +SW+A+I GY       +A+E F  M 
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMI 418

Query: 213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCI 271
             G  PNH   +  L+AC + G  +QG  I   +  N  I+   +    +I++  + G +
Sbjct: 419 AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478

Query: 272 ETACSVFDSMPNRDVFAYT-SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE 330
           + A ++    P    F  T ++ + L        A  +   ++L  +       ++YG+ 
Sbjct: 479 DEAYAMIRRAP----FKPTVNMWAALLT------ACRIHKNLELGRLAA----EKLYGMG 524

Query: 331 P-GVQHYGCLVDLLGRAGMLEAAKKVV 356
           P  + +Y  L++L   +G    A KVV
Sbjct: 525 PEKLNNYVVLLNLYNSSGRQAEAAKVV 551

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 71.4 bits (175), Expect = 4e-13
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 24/207 (11%)

Query: 178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQL-CGFRPNHAGIVGALTACAFLGAL 236
           D    K+ VS  + I   V     +EALE F  ++  C F    +     + AC  L ++
Sbjct: 80  DTQIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139

Query: 237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL 296
              + ++ +V+ +G E D  +   ++ M+ KCG +  A  +FD MP R++ ++ ++I GL
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGL 199

Query: 297 ANHDQSASAIELFMRMQLEG--------VVPNESMSEIYGIEPGVQHYGC---------- 338
            +      A  LF  M  +G        VV   + + +     G Q + C          
Sbjct: 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259

Query: 339 -----LVDLLGRAGMLEAAKKVVREMP 360
                L+D+  + G +E A+ V   MP
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDGMP 286

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 54.7 bits (133), Expect = 4e-10
 Identities = 13/48 (27%), Positives = 25/48 (52%)

Query: 53  TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD 100
              +NT+I G+ +K +  +A  L+ +M +    PN YT+S ++     
Sbjct: 3   VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 59.9 bits (145), Expect = 2e-09
 Identities = 50/176 (28%), Positives = 79/176 (44%), Gaps = 21/176 (11%)

Query: 227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV 286
           ++ CA    +D    +   V   G++ D  L T +I   AK G ++    VF  M N  V
Sbjct: 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGV 503

Query: 287 FA----YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL 342
            A    + +LI G A   Q A A   +  M+ + V P+  +            +  L+  
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV------------FNALISA 551

Query: 343 LGRAGMLEAAKKVVREM-----PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE 393
            G++G ++ A  V+ EM     PI+PD+  +GAL+ AC   G VD  KE  + + E
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHE 607

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.4 bits (127), Expect = 3e-09
 Identities = 15/47 (31%), Positives = 32/47 (68%), Gaps = 4/47 (8%)

Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMPEK----NAVSWSAMINGY 195
           DV+++ +LI+GY K G++  A ++F++M ++    N  ++S +I+G 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 49.1 bits (117), Expect = 4e-06
 Identities = 64/272 (23%), Positives = 110/272 (40%), Gaps = 38/272 (13%)

Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNA----VSWSAMINGYVQVDLFKEAL 205
           V  +V ++ +LI+G A++GQ++ A   +  M  KN     V ++A+I+   Q      A 
Sbjct: 503 VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF 562

Query: 206 EHFNYM--QLCGFRPNHAGIVGAL-TACAFLGALDQGRWIHAYVDRNGIELDIILGTAII 262
           +    M  +     P+H   VGAL  ACA  G +D+ + ++  +    I+    + T  +
Sbjct: 563 DVLAEMKAETHPIDPDHI-TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621

Query: 263 DMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL---ANHDQSA-SAIELFMRMQLEGV- 317
           +  ++ G  + A S++D M  + V       S L   A H      A E+    + +G+ 
Sbjct: 622 NSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681

Query: 318 ---VPNESMS-------------EIY------GIEPGVQHYGCLVDLLGRAGMLEAAKKV 355
              V   S+              E+Y       + P V     L+  L     L  A +V
Sbjct: 682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEV 741

Query: 356 VREMP---IEPDNYVLGALLNACRVHGDVDLG 384
           + EM    + P+      LL A     D D+G
Sbjct: 742 LSEMKRLGLCPNTITYSILLVASERKDDADVG 773

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.8 bits (102), Expect = 7e-06
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
           DV  Y +LI G     +   A++LF  M+  G+ PN 
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNV 38

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 48.3 bits (115), Expect = 8e-06
 Identities = 52/236 (22%), Positives = 107/236 (45%), Gaps = 25/236 (10%)

Query: 153 DVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHF 208
           D   +T+LI+  AKSG++    ++F +M     E N  ++ A+I+G  +     +A   +
Sbjct: 471 DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAY 530

Query: 209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV--DRNGIELDIILGTAIIDMYA 266
             M+    +P+       ++AC   GA+D+   + A +  + + I+ D I   A++   A
Sbjct: 531 GIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590

Query: 267 KCGCIETACSVFDSMPNRDVFA----YTSLISGLANHDQSASAIELFMRMQLEGVVPNES 322
             G ++ A  V+  +   ++      YT  ++  +       A+ ++  M+ +GV P+E 
Sbjct: 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEV 650

Query: 323 MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNAC 375
                        +  LVD+ G AG L+ A +++++     I+       +L+ AC
Sbjct: 651 F------------FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGAC 694

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 41.6 bits (99), Expect = 2e-05
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 259 TAIIDMYAKCGCIETACSVFDSMPNR----DVFAYTSLISGLAN 298
             +ID Y K G +E A  +F+ M  R    +V+ Y+ LI GL  
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 40.9 bits (97), Expect = 4e-05
 Identities = 13/37 (35%), Positives = 24/37 (64%)

Query: 183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN 219
            + V+++ +I+GY +    +EAL+ FN M+  G +PN
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPN 37

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN 87
            +NT+I G  +     +A  L+K+M      P+
Sbjct: 1  VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.4 bits (93), Expect = 8e-05
 Identities = 12/30 (40%), Positives = 22/30 (73%)

Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKN 184
           +++ SLI+GY K+G++  A ++F +M EK 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.3 bits (93), Expect = 8e-05
 Identities = 9/32 (28%), Positives = 22/32 (68%)

Query: 150 VNRDVISWTSLINGYAKSGQISIARQMFDKMP 181
           +  DV+++ +LI+G  ++G++  A ++ D+M 
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGF 216
           V+++++I+GY +    +EALE F  M+  G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.0 bits (87), Expect = 5e-04
 Identities = 7/31 (22%), Positives = 16/31 (51%)

Query: 54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDF 84
            +N++I G+ +  +  +A  L+K+M     
Sbjct: 1  VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 331 PGVQHYGCLVDLLGRAGMLEAAKKVVREMP---IEPDNYVLGALLNAC 375
           P V  Y  L+D   + G +E A K+  EM    I+P+ Y    L++  
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE 321
             Y +LI GL    +   A+ELF  M+  G+ P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 34.7 bits (81), Expect = 0.003
 Identities = 9/30 (30%), Positives = 21/30 (70%)

Query: 155 ISWTSLINGYAKSGQISIARQMFDKMPEKN 184
           +++ +LI+G  K+G++  A ++F +M E+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERG 30

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	498
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.88
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.88
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.85
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.85
PRK14574	822	hmsH outer membrane protein; Provisional	99.81
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.76
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.74
PRK14574	822	hmsH outer membrane protein; Provisional	99.74
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.73
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.72
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.65
KOG2076	895	consensus RNA polymerase III transcription factor	99.64
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.63
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.63
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.62
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.61
KOG1126	638	consensus DNA-binding cell division cycle control	99.61
KOG2003	840	consensus TPR repeat-containing protein [General f	99.6
KOG2076	895	consensus RNA polymerase III transcription factor	99.59
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.58
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.58
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.55
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.55
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.53
KOG2003	840	consensus TPR repeat-containing protein [General f	99.53
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.52
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.51
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.51
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.5
KOG1126	638	consensus DNA-binding cell division cycle control	99.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.46
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.42
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.41
KOG1129	478	consensus TPR repeat-containing protein [General f	99.39
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.38
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.37
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.33
PF13041	50	PPR_2: PPR repeat family	99.32
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.31
PF13041	50	PPR_2: PPR repeat family	99.31
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.3
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.29
PRK12370	553	invasion protein regulator; Provisional	99.28
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.28
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.26
PRK12370	553	invasion protein regulator; Provisional	99.24
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.24
KOG1129	478	consensus TPR repeat-containing protein [General f	99.23
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.21
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.2
PRK11189	296	lipoprotein NlpI; Provisional	99.17
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.15
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.15
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.14
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.14
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.14
KOG1125	579	consensus TPR repeat-containing protein [General f	99.12
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.11
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.07
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.06
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.05
PRK11189	296	lipoprotein NlpI; Provisional	99.04
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.01
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.01
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.0
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.0
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.97
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.97
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.96
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.95
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.94
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.92
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.91
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.9
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.87
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.87
PRK15359	144	type III secretion system chaperone protein SscB;	98.82
PRK04841	903	transcriptional regulator MalT; Provisional	98.8
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.79
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.76
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.76
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.71
PRK15359	144	type III secretion system chaperone protein SscB;	98.71
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.71
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.68
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.67
PLN02789	320	farnesyltranstransferase	98.65
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.64
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.63
PF12854	34	PPR_1: PPR repeat	98.61
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.59
PRK04841	903	transcriptional regulator MalT; Provisional	98.58
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.57
PF12854	34	PPR_1: PPR repeat	98.57
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.57
KOG1125	579	consensus TPR repeat-containing protein [General f	98.57
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.55
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.53
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.51
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.5
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.47
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.46
PLN02789	320	farnesyltranstransferase	98.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.43
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.41
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.41
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.41
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.38
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.36
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.36
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.33
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.31
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.29
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.24
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.23
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.18
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.18
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.16
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.15
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.09
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.09
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.07
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.05
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.05
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.04
KOG0553	304	consensus TPR repeat-containing protein [General f	98.04
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.03
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.02
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.02
KOG0553	304	consensus TPR repeat-containing protein [General f	98.01
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.99
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.97
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.94
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.93
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.91
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.91
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.86
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.86
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.85
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.84
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.81
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.81
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.79
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.77
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.77
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.76
PRK15331	165	chaperone protein SicA; Provisional	97.75
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.72
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.71
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.67
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.67
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.66
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.63
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.62
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.6
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.6
PF13371	73	TPR_9: Tetratricopeptide repeat	97.58
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.58
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.58
PF12688	120	TPR_5: Tetratrico peptide repeat	97.53
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.52
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.51
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.5
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.5
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.41
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.39
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.34
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.33
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.32
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.29
PRK10803	263	tol-pal system protein YbgF; Provisional	97.27
PF13371	73	TPR_9: Tetratricopeptide repeat	97.27
PF12688	120	TPR_5: Tetratrico peptide repeat	97.26
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.25
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.21
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.2
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.18
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.16
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.14
PF13431	34	TPR_17: Tetratricopeptide repeat	97.13
PF13428	44	TPR_14: Tetratricopeptide repeat	97.13
PRK10803	263	tol-pal system protein YbgF; Provisional	97.1
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.1
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.1
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.07
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.03
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.99
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.98
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.98
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.96
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.93
PF13512	142	TPR_18: Tetratricopeptide repeat	96.92
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.88
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.86
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.81
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.78
KOG4555	175	consensus TPR repeat-containing protein [Function	96.6
PRK11906	458	transcriptional regulator; Provisional	96.47
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.46
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.45
KOG1585	308	consensus Protein required for fusion of vesicles	96.44
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.41
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.36
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.31
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.3
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.11
PRK11906	458	transcriptional regulator; Provisional	96.02
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.97
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.93
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.89
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.76
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.76
PRK15331	165	chaperone protein SicA; Provisional	95.76
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.72
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.7
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.67
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.58
KOG3941	406	consensus Intermediate in Toll signal transduction	95.57
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.52
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.51
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.45
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.32
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.31
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.3
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.27
KOG3941	406	consensus Intermediate in Toll signal transduction	95.14
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.95
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.93
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.89
KOG4234	271	consensus TPR repeat-containing protein [General f	94.88
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.73
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.72
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.67
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.64
KOG4555	175	consensus TPR repeat-containing protein [Function	94.54
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.45
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.41
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.38
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.03
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.93
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.7
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.67
KOG1258	577	consensus mRNA processing protein [RNA processing	93.65
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.57
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	93.51
KOG4648	536	consensus Uncharacterized conserved protein, conta	93.49
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.48
PRK09687	280	putative lyase; Provisional	93.37
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	93.33
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	93.13
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.86
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.81
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.74
COG3629	280	DnrI DNA-binding transcriptional activator of the	92.73
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	92.7
PF13428	44	TPR_14: Tetratricopeptide repeat	92.69
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.57
PF13512	142	TPR_18: Tetratricopeptide repeat	92.53
PRK09687	280	putative lyase; Provisional	92.37
KOG1585	308	consensus Protein required for fusion of vesicles	92.15
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.02
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.02
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.99
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.93
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.92
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	91.84
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	91.64
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.47
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	91.23
COG1747	711	Uncharacterized N-terminal domain of the transcrip	91.21
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.18
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.91
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.88
KOG4648	536	consensus Uncharacterized conserved protein, conta	90.87
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.28
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.97
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.92
COG4105	254	ComL DNA uptake lipoprotein [General function pred	89.63
KOG1586	288	consensus Protein required for fusion of vesicles	89.54
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	89.48
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	89.32
KOG4234	271	consensus TPR repeat-containing protein [General f	89.0
KOG3364	149	consensus Membrane protein involved in organellar	88.76
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	88.6
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	88.25
PF13431	34	TPR_17: Tetratricopeptide repeat	88.1
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.06
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.87
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	87.84
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.79
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	87.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	87.05
PRK11619	644	lytic murein transglycosylase; Provisional	87.03
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	87.0
PRK10941	269	hypothetical protein; Provisional	87.0
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.63
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	85.99
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	85.93
KOG1550	552	consensus Extracellular protein SEL-1 and related	85.89
COG1747	711	Uncharacterized N-terminal domain of the transcrip	85.76
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	85.75
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	85.66
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	85.19
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	84.8
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.76
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	84.44
KOG1258	577	consensus mRNA processing protein [RNA processing	84.22
PF13762	145	MNE1: Mitochondrial splicing apparatus component	84.2
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	84.11
COG3947	361	Response regulator containing CheY-like receiver a	84.1
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	83.96
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	83.74
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.49
cd08819	88	CARD_MDA5_2 Caspase activation and recruitment dom	83.41
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	83.28
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	83.26
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	83.22
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	82.65
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	82.61
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	82.37
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.05
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	81.93
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	81.92
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	81.86
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.36
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	81.03
COG5159	421	RPN6 26S proteasome regulatory complex component [	80.79
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	80.69
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	80.43
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	80.01

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=9.2e-75  Score=605.59  Aligned_cols=482  Identities=34%  Similarity=0.588  Sum_probs=452.1

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR   81 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~   81 (498)
                      +.++++|..+.+.|+.||+.++|+|+.+|+++  |+++.|.++|+.|+.+|+.+||++|.+|++.|++++|+++|++|.+
T Consensus       204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~  281 (857)
T PLN03077        204 ARGREVHAHVVRFGFELDVDVVNALITMYVKC--GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRE  281 (857)
T ss_pred             hhHHHHHHHHHHcCCCcccchHhHHHHHHhcC--CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881           82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI  161 (498)
Q Consensus        82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li  161 (498)
                      .|+.||..||+.++.+|++.|+++.+.+++..+.+.|+.||..+|++|+.+|+++|++++|.++|++|..||..+|+.+|
T Consensus       282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li  361 (857)
T PLN03077        282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI  361 (857)
T ss_pred             cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888888888777


Q ss_pred             HHHHccCCHHHHHHHHhhC-------------------------------------------------------------
Q 010881          162 NGYAKSGQISIARQMFDKM-------------------------------------------------------------  180 (498)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~-------------------------------------------------------------  180 (498)
                      .+|++.|++++|.++|++|                                                             
T Consensus       362 ~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~  441 (857)
T PLN03077        362 SGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID  441 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHH
Confidence            7776666666555555554                                                             


Q ss_pred             ---------CCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881          181 ---------PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI  251 (498)
Q Consensus       181 ---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  251 (498)
                               .++|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus       442 ~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~  520 (857)
T PLN03077        442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI  520 (857)
T ss_pred             HHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence                     445666777777777777777777888888875 5899999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc----------
Q 010881          252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------  321 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------  321 (498)
                      .++..++++|+++|+++|++++|.++|+.+ .+|..+||+||.+|++.|+.++|+++|++|.+.|+.||.          
T Consensus       521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~  599 (857)
T PLN03077        521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC  599 (857)
T ss_pred             CccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence            999999999999999999999999999999 899999999999999999999999999999999999998          


Q ss_pred             --------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010881          322 --------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKET  387 (498)
Q Consensus       322 --------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  387 (498)
                                    .|...+|+.|+..+|+.++++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++..
T Consensus       600 ~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~  679 (857)
T PLN03077        600 SRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELA  679 (857)
T ss_pred             hhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence                          566688999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHH
Q 010881          388 VESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFG  467 (498)
Q Consensus       388 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  467 (498)
                      .+++.+++|+++..|..|+++|...|+|++|.++.+.|+++|+++.||+||+++++.+|.|..++.+||+.++|+..|+.
T Consensus       680 a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~  759 (857)
T PLN03077        680 AQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEG  759 (857)
T ss_pred             HHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcccCCcccccc
Q 010881          468 IDKHLKSLCFFDDGNEVATE  487 (498)
Q Consensus       468 ~~~~~~~~g~~~~~~~~~~~  487 (498)
                      +.++|++.||.||+..|++.
T Consensus       760 l~~~~~~~g~~~~~~~~~~~  779 (857)
T PLN03077        760 FYEKMKASGLAGSESSSMDE  779 (857)
T ss_pred             HHHHHHhCCcCCCcchhccc
Confidence            99999999999999988753

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.4e-73  Score=581.46  Aligned_cols=482  Identities=27%  Similarity=0.414  Sum_probs=397.0

Q ss_pred             chHhHHHHHHHHhC-CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC----CCCcchHHHHHHHHHhCCCchHHHHHH
Q 010881            2 KQIKQIQSHLTVSG-TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ----YRTTFIWNTMIRGFAEKNEPIKAFALY   76 (498)
Q Consensus         2 ~~~~~~~~~~~~~g-~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~   76 (498)
                      ++|.+++..|...+ +.||..+|+.++.+|++.  ++++.|.+++..|.    .||+.+||.++.+|++.|+++.|.++|
T Consensus       104 ~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf  181 (697)
T PLN03081        104 REALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF  181 (697)
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHH
Confidence            35666777776654 667777777777777777  77777777777664    467777777777777777777777777


Q ss_pred             HHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhcc----CCC
Q 010881           77 KQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS----VNR  152 (498)
Q Consensus        77 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~  152 (498)
                      ++|.+    ||..+|++++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++.+.|..+.+.+++..+    ..+
T Consensus       182 ~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~  257 (697)
T PLN03081        182 DEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVG  257 (697)
T ss_pred             hcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCc
Confidence            77753    6777777777777777777777777777777777777777777777777777777777766543    356


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010881          153 DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF  232 (498)
Q Consensus       153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  232 (498)
                      |..+|++|+.+|+++|++++|.++|++|.++|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++
T Consensus       258 d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~  337 (697)
T PLN03081        258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR  337 (697)
T ss_pred             cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010881          233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM  312 (498)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  312 (498)
                      .|++++|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+.+||+||.+|++.|+.++|+++|++|
T Consensus       338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M  417 (697)
T PLN03081        338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERM  417 (697)
T ss_pred             ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHcCCCCCc------------------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHH
Q 010881          313 QLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVL  368 (498)
Q Consensus       313 ~~~~~~p~~------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~  368 (498)
                      .+.|+.||.                        .|.+.+|+.|+..+|+.++++|++.|++++|.+++++|++.|+..+|
T Consensus       418 ~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~  497 (697)
T PLN03081        418 IAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMW  497 (697)
T ss_pred             HHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHH
Confidence            777777776                        44455788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEE
Q 010881          369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEF  448 (498)
Q Consensus       369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~  448 (498)
                      ++|+.+|..+|+++.|..+++++.+.+|++...|..++++|++.|+|++|.++++.|+++|+.+.||++|+++++.+|.|
T Consensus       498 ~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f  577 (697)
T PLN03081        498 AALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF  577 (697)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCccccccCC
Q 010881          449 VSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEGG  489 (498)
Q Consensus       449 ~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~  489 (498)
                      ++++.+||...+++..+.++..+|++.||.||+..|++...
T Consensus       578 ~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~  618 (697)
T PLN03081        578 FSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVD  618 (697)
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhcccc
Confidence            99999999999999999999999999999999999987654

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.8e-60  Score=498.04  Aligned_cols=421  Identities=31%  Similarity=0.500  Sum_probs=366.1

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR   81 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~   81 (498)
                      +.+.++++.+.+.|..++..++|+|+.+|++.  |+++.|.++|++|++||+.+||.+|.+|++.|++++|+++|++|..
T Consensus       103 ~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~--g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~  180 (857)
T PLN03077        103 EEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF--GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW  180 (857)
T ss_pred             HHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC--CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881           82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI  161 (498)
Q Consensus        82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li  161 (498)
                      .|+.||..||+.++.+|+..+++..+.+++..+.+.|+.||..+++.|+.+|+++|++++|.++|++|..+|..+||++|
T Consensus       181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li  260 (857)
T PLN03077        181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMI  260 (857)
T ss_pred             cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999888776666666655


Q ss_pred             HHH----------------------------------------------------------------------HccCCHH
Q 010881          162 NGY----------------------------------------------------------------------AKSGQIS  171 (498)
Q Consensus       162 ~~~----------------------------------------------------------------------~~~~~~~  171 (498)
                      .+|                                                                      ++.|+++
T Consensus       261 ~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~  340 (857)
T PLN03077        261 SGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG  340 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHH
Confidence            554                                                                      4556666


Q ss_pred             HHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881          172 IARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI  251 (498)
Q Consensus       172 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  251 (498)
                      +|.++|++|..||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+
T Consensus       341 ~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~  420 (857)
T PLN03077        341 EAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL  420 (857)
T ss_pred             HHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCC
Confidence            67777777777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc----------
Q 010881          252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----------  321 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------  321 (498)
                      .|+..++++|+++|+++|++++|.++|++|.++|+.+|+++|.+|++.|+.++|+.+|++|.. ++.||.          
T Consensus       421 ~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~  499 (857)
T PLN03077        421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSAC  499 (857)
T ss_pred             CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999986 588886          


Q ss_pred             -------------hhhhhhCC------------------------------CCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010881          322 -------------SMSEIYGI------------------------------EPGVQHYGCLVDLLGRAGMLEAAKKVVRE  358 (498)
Q Consensus       322 -------------~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  358 (498)
                                   ....+.|+                              .||..+|+.+|.+|++.|+.++|.++|++
T Consensus       500 ~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~  579 (857)
T PLN03077        500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNR  579 (857)
T ss_pred             hhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHH
Confidence                         11111222                              56677777777777777777777777777


Q ss_pred             C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-cC-CCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881          359 M---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE-RS-LDHEGVHVLLSNIYASTEQWNGVEKVRRGM  425 (498)
Q Consensus       359 ~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  425 (498)
                      |   ++.||..||+.++.+|.+.|++++|.++|+.|.+ .+ .++..+|..++.+|.+.|++++|.+++++|
T Consensus       580 M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        580 MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            7   6777777777777777777777777777777773 22 223456777777777777777777777776

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9.7e-60  Score=483.99  Aligned_cols=419  Identities=15%  Similarity=0.222  Sum_probs=392.6

Q ss_pred             chHhHHHHHHHHhCC-CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhH
Q 010881            2 KQIKQIQSHLTVSGT-LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQML   80 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~   80 (498)
                      +.|.++++.|.+.|+ .|+..+++.++..|.+.  |.+++|..+|+.|..||..+|+.+|.+|++.|+++.|.++|++|.
T Consensus       387 ~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~  464 (1060)
T PLN03218        387 KDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQ  464 (1060)
T ss_pred             HHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            578999999999995 57888889999999999  999999999999999999999999999999999999999999999


Q ss_pred             HCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC----CCChhh
Q 010881           81 RSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV----NRDVIS  156 (498)
Q Consensus        81 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~  156 (498)
                      +.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.    .||..+
T Consensus       465 ~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vT  544 (1060)
T PLN03218        465 EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV  544 (1060)
T ss_pred             HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999874    689999


Q ss_pred             HHHHHHHHHccCCHHHHHHHHhhCC------CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010881          157 WTSLINGYAKSGQISIARQMFDKMP------EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC  230 (498)
Q Consensus       157 ~~~li~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  230 (498)
                      |+.+|.+|++.|++++|.++|++|.      .||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|
T Consensus       545 YnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay  624 (1060)
T PLN03218        545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC  624 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence            9999999999999999999999994      4799999999999999999999999999999999999999999999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHH
Q 010881          231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASAI  306 (498)
Q Consensus       231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~  306 (498)
                      ++.|++++|..+|++|.+.|+.||..+|+.++++|++.|++++|.++|+.|.+    ||..+|++||.+|++.|++++|.
T Consensus       625 ~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~  704 (1060)
T PLN03218        625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKAL  704 (1060)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999974    78999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHH
Q 010881          307 ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDL  383 (498)
Q Consensus       307 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~  383 (498)
                      ++|++|.+.|+            .||..+|+.||.+|++.|++++|.++|++|   ++.||..+|+.++.+|++.|+++.
T Consensus       705 ~lf~eM~~~g~------------~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~  772 (1060)
T PLN03218        705 ELYEDIKSIKL------------RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV  772 (1060)
T ss_pred             HHHHHHHHcCC------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence            99999998855            455899999999999999999999999999   899999999999999999999999


Q ss_pred             HHHHHHHHHhcCC-CCchHHHHHHHHhHh----cC-------------------CcchHHHHHHhhhhCCccccC
Q 010881          384 GKETVESLVERSL-DHEGVHVLLSNIYAS----TE-------------------QWNGVEKVRRGMEDNEVRKVP  434 (498)
Q Consensus       384 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g-------------------~~~~a~~~~~~m~~~~~~~~~  434 (498)
                      |.+++++|.+.+. ++..+|..++..|.+    .+                   ..++|..+|++|.+.|+.|+.
T Consensus       773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~  847 (1060)
T PLN03218        773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTM  847 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCH
Confidence            9999999999874 345567777655331    11                   235799999999999998664

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5.5e-59  Score=478.42  Aligned_cols=448  Identities=15%  Similarity=0.195  Sum_probs=396.3

Q ss_pred             hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC----CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 010881            3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ----YRTTFIWNTMIRGFAEKNEPIKAFALYKQ   78 (498)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~   78 (498)
                      .|..++..|..    ||..+|+.++.+|++.  |+++.|.++|+.|.    .||..+|+.+|.+|++.|++++|.++|++
T Consensus       424 eAl~lf~~M~~----pd~~Tyn~LL~a~~k~--g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~e  497 (1060)
T PLN03218        424 EAFRFAKLIRN----PTLSTFNMLMSVCASS--QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE  497 (1060)
T ss_pred             HHHHHHHHcCC----CCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence            45566666653    9999999999999999  99999999999987    58999999999999999999999999999


Q ss_pred             hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC------CC
Q 010881           79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV------NR  152 (498)
Q Consensus        79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~  152 (498)
                      |.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.      .|
T Consensus       498 M~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P  577 (1060)
T PLN03218        498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP  577 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999884      57


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010881          153 DVISWTSLINGYAKSGQISIARQMFDKMPE----KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALT  228 (498)
Q Consensus       153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  228 (498)
                      |..+|+++|.+|++.|++++|.++|+.|.+    |+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.
T Consensus       578 D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~  657 (1060)
T PLN03218        578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVD  657 (1060)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            999999999999999999999999999974    5779999999999999999999999999999999999999999999


Q ss_pred             HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHH
Q 010881          229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP----NRDVFAYTSLISGLANHDQSAS  304 (498)
Q Consensus       229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~  304 (498)
                      +|++.|++++|.++++.|.+.|+.||..+|++++.+|++.|++++|.++|+.|.    .||..+|++||.+|++.|++++
T Consensus       658 a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee  737 (1060)
T PLN03218        658 VAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK  737 (1060)
T ss_pred             HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999999999999999999999999999999999999995    5899999999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHh----
Q 010881          305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRV----  377 (498)
Q Consensus       305 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~----  377 (498)
                      |.++|++|.+.|+.|            |..+|+.++.+|++.|++++|.+++.+|   ++.||..+|+.++..|.+    
T Consensus       738 Alelf~eM~~~Gi~P------------d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~k  805 (1060)
T PLN03218        738 ALEVLSEMKRLGLCP------------NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEK  805 (1060)
T ss_pred             HHHHHHHHHHcCCCC------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999986554            5899999999999999999999999999   899999999999876542    


Q ss_pred             c-------------------CCHHHHHHHHHHHHhcC-CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCcee
Q 010881          378 H-------------------GDVDLGKETVESLVERS-LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCS  437 (498)
Q Consensus       378 ~-------------------g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  437 (498)
                      .                   +..+.|..+|++|++.+ .++..+|..++.++...+..+.+..+++.|...+..++....
T Consensus       806 a~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y  885 (1060)
T PLN03218        806 ACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNL  885 (1060)
T ss_pred             HhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhh
Confidence            1                   23467999999999988 345568888888888888888888888888766544322211


Q ss_pred             EEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCc
Q 010881          438 LIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN  482 (498)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~  482 (498)
                      .        .++.+...++  ++    --.+++.|.+.|+.|+..
T Consensus       886 ~--------~Li~g~~~~~--~~----A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        886 S--------TLVDGFGEYD--PR----AFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             H--------HHHHhhccCh--HH----HHHHHHHHHHcCCCCCcc
Confidence            1        1111221111  22    334579999999999985

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=7.2e-55  Score=445.48  Aligned_cols=428  Identities=20%  Similarity=0.307  Sum_probs=387.6

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR   81 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~   81 (498)
                      +.++++|..|.+.|+.||+.++|.|+.+|+++  |+++.|.++|++|+.||..+||.+|.+|++.|++++|+++|++|.+
T Consensus       140 ~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~--g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~  217 (697)
T PLN03081        140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWE  217 (697)
T ss_pred             HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC--CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999  9999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881           82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI  161 (498)
Q Consensus        82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li  161 (498)
                      .|+.||..||+.++.+|+..|..+.+.+++..+.+.|+.||..++++|+++|+++|++++|.++|++|.++|+.+||++|
T Consensus       218 ~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li  297 (697)
T PLN03081        218 DGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSML  297 (697)
T ss_pred             hCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHccCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH
Q 010881          162 NGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD  237 (498)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  237 (498)
                      .+|++.|+.++|.++|++|.    .||..||++++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|+++
T Consensus       298 ~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~  377 (697)
T PLN03081        298 AGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME  377 (697)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHH
Confidence            99999999999999999994    67999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010881          238 QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASAIELFMRMQ  313 (498)
Q Consensus       238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  313 (498)
                      +|.++|+.|.    .||..+||++|.+|++.|+.++|.++|++|.+    ||..||++++.+|++.|..++|.++|+.|.
T Consensus       378 ~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~  453 (697)
T PLN03081        378 DARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS  453 (697)
T ss_pred             HHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            9999999986    57899999999999999999999999999864    899999999999999999999999999998


Q ss_pred             H-cCCCCCc--------------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010881          314 L-EGVVPNE--------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGA  370 (498)
Q Consensus       314 ~-~~~~p~~--------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  370 (498)
                      + .|+.|+.                    .+.+..++.|+..+|+.|+.+|...|+++.|..+++++ +..| +..+|..
T Consensus       454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~  533 (697)
T PLN03081        454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV  533 (697)
T ss_pred             HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence            6 5899985                    44555678999999999999999999999999999998 7777 4779999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHH---HHhH--------hcCCcchHHHHHHhhhhCCccccCc
Q 010881          371 LLNACRVHGDVDLGKETVESLVERSLD--HEGVHVLLS---NIYA--------STEQWNGVEKVRRGMEDNEVRKVPG  435 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~---~~~~--------~~g~~~~a~~~~~~m~~~~~~~~~~  435 (498)
                      |+..|++.|++++|.++++.|.+.+..  +...|..+.   ..+.        ...-++...++..+|.+.|..++..
T Consensus       534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~  611 (697)
T PLN03081        534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN  611 (697)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            999999999999999999999987632  111111110   0000        0011344567788888888765443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=3.6e-26  Score=244.32  Aligned_cols=408  Identities=12%  Similarity=0.035  Sum_probs=309.4

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQ   78 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~   78 (498)
                      +.|.+++..+.+. .++++.++..+..+|...  |++++|.+.|+++.   ..+...+..+...+...|++++|...|++
T Consensus       448 ~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  524 (899)
T TIGR02917       448 DKALAAAKKLEKK-QPDNASLHNLLGAIYLGK--GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEK  524 (899)
T ss_pred             HHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3566677776654 355778888889999998  99999999998764   33556777788888889999999999999


Q ss_pred             hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC---CCChh
Q 010881           79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV---NRDVI  155 (498)
Q Consensus        79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~  155 (498)
                      +.+.+ +.+..++..+...+...|+.++|..+++++.+.++ .+...+..++..+...|++++|.++++++.   +.+..
T Consensus       525 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  602 (899)
T TIGR02917       525 VLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE  602 (899)
T ss_pred             HHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH
Confidence            88743 23566778888888888999999999888887763 356667778888888888888888888765   33567


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010881          156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF  232 (498)
Q Consensus       156 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  232 (498)
                      .|..+..++.+.|++++|...|+++.+   .+...+..+..++.+.|++++|...|+++.+.. +.+..++..+...+..
T Consensus       603 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  681 (899)
T TIGR02917       603 AWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLA  681 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence            788888888888888888888887753   256677788888888888888888888887753 3346677778888888


Q ss_pred             cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHH
Q 010881          233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFM  310 (498)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~  310 (498)
                      .|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+..  |+..++..++.++...|++++|...++
T Consensus       682 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  760 (899)
T TIGR02917       682 AKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE  760 (899)
T ss_pred             cCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence            888888888888887765 56667777788888888888888888887654  455667777778888888888888888


Q ss_pred             HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881          311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-PDNYVLGALLNACRVHGDVDLGKETV  388 (498)
Q Consensus       311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~  388 (498)
                      ++.+.  .|+           +...+..+...|...|++++|...|+++ ... ++..+++.+...+...|+ .+|+..+
T Consensus       761 ~~l~~--~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~  826 (899)
T TIGR02917       761 AWLKT--HPN-----------DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYA  826 (899)
T ss_pred             HHHHh--CCC-----------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHH
Confidence            87764  233           4667777777777777777777777776 223 356667777777777777 6677777


Q ss_pred             HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      +++++..|+++..+..++.++...|++++|.++++++.+.+.
T Consensus       827 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~  868 (899)
T TIGR02917       827 EKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP  868 (899)
T ss_pred             HHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            777777777777777777777777777777777777766554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.96  E-value=6.5e-26  Score=242.41  Aligned_cols=404  Identities=12%  Similarity=0.036  Sum_probs=332.7

Q ss_pred             hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881            3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQM   79 (498)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m   79 (498)
                      .|.+.+..+.+.... +......++..|.+.  |+++.|..+++.+.   ..+...|+.+...+...|++++|...|+++
T Consensus       415 ~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  491 (899)
T TIGR02917       415 EAIADLETAAQLDPE-LGRADLLLILSYLRS--GQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKA  491 (899)
T ss_pred             HHHHHHHHHHhhCCc-chhhHHHHHHHHHhc--CCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            456667777666533 334556677888888  99999999998876   346678889999999999999999999998


Q ss_pred             HHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---CChhh
Q 010881           80 LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---RDVIS  156 (498)
Q Consensus        80 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~  156 (498)
                      .+.. +.+...+..+...+...|++++|...++.+.+..+ .+..++..+...+.+.|+.++|...++++..   .+...
T Consensus       492 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  569 (899)
T TIGR02917       492 LSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEP  569 (899)
T ss_pred             HhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhH
Confidence            8743 22455677788888899999999999999988764 3677888889999999999999999988743   35567


Q ss_pred             HHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010881          157 WTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL  233 (498)
Q Consensus       157 ~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  233 (498)
                      +..++..+.+.|++++|..+++.+..   .+...|..+..++...|++++|...|+++.+.. +.+...+..+...+...
T Consensus       570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  648 (899)
T TIGR02917       570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVM  648 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence            78888999999999999999988863   367788899999999999999999999998753 34566777888888899


Q ss_pred             CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 010881          234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFM  310 (498)
Q Consensus       234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~  310 (498)
                      |++++|..+++.+.+.. +.+..++..++..+...|++++|.++++.+.+   .+...+..+...+...|++++|...|+
T Consensus       649 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  727 (899)
T TIGR02917       649 KNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYR  727 (899)
T ss_pred             CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999988765 66678889999999999999999999998875   356678888888999999999999999


Q ss_pred             HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881          311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETV  388 (498)
Q Consensus       311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  388 (498)
                      ++...+              |+..++..++.++.+.|++++|.+.++++  ..+.+...+..+...|...|++++|.+.|
T Consensus       728 ~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  793 (899)
T TIGR02917       728 KALKRA--------------PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHY  793 (899)
T ss_pred             HHHhhC--------------CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            988752              33467778899999999999999999888  33347788888888999999999999999


Q ss_pred             HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +++++..|+++.++..++.++...|+ .+|+.+++++.+.
T Consensus       794 ~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~  832 (899)
T TIGR02917       794 RTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKL  832 (899)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence            99999999998889999999999999 8899999888765

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=2e-22  Score=185.58  Aligned_cols=378  Identities=13%  Similarity=0.096  Sum_probs=305.1

Q ss_pred             ChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHH-H
Q 010881           19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF-I   94 (498)
Q Consensus        19 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l   94 (498)
                      -..+|+.+.+++...  |++++|...++.+.+   ..+..|..+..++..+|+.+.|.+.|.+.++  +.|+.....+ +
T Consensus       115 ~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~l  190 (966)
T KOG4626|consen  115 GAEAYSNLANILKER--GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDL  190 (966)
T ss_pred             HHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcch
Confidence            346788888888888  999999998887653   3567888888899999999999999988887  5576554433 3


Q ss_pred             HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCC---hhhHHHHHHHHHccCCHH
Q 010881           95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD---VISWTSLINGYAKSGQIS  171 (498)
Q Consensus        95 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~  171 (498)
                      -..+...|++++|...+.+.++..+. =...|+.|...+...|++..|+..|++.++-|   ..+|..|...|...+.++
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d  269 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFD  269 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcch
Confidence            33445578888898888888877542 34567788888888999999999998877554   367888888898899999


Q ss_pred             HHHHHHhhCC--CC-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010881          172 IARQMFDKMP--EK-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-HAGIVGALTACAFLGALDQGRWIHAYVD  247 (498)
Q Consensus       172 ~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~  247 (498)
                      .|...|.+..  .| ..+.+..+...|...|.++-|+..|++..+.  .|+ ...|+.+..++-..|++.+|.+.+....
T Consensus       270 ~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL  347 (966)
T KOG4626|consen  270 RAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKAL  347 (966)
T ss_pred             HHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHH
Confidence            9988887765  33 4667788888888999999999999998874  555 3578889999999999999999998888


Q ss_pred             HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhh
Q 010881          248 RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS  324 (498)
Q Consensus       248 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  324 (498)
                      ... +......+.|...|...|.+++|..+|....+  | -...++.|...|-++|++++|+..|++.++  +.|+    
T Consensus       348 ~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~----  420 (966)
T KOG4626|consen  348 RLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPT----  420 (966)
T ss_pred             HhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCch----
Confidence            775 55567788899999999999999999988775  3 345788888999999999999999998876  5555    


Q ss_pred             hhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       325 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                             -...|+.+...|-..|+.+.|.+.+.+. .++| -...++.|...|...|++.+|+.-|+.++.+.|+.+.+|
T Consensus       421 -------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~  493 (966)
T KOG4626|consen  421 -------FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAY  493 (966)
T ss_pred             -------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhh
Confidence                   3788899999999999999999999887 7777 466788899999999999999999999999999999898


Q ss_pred             HHHHHHhHhcCCcch
Q 010881          403 VLLSNIYASTEQWNG  417 (498)
Q Consensus       403 ~~l~~~~~~~g~~~~  417 (498)
                      -.++.++---.+|.+
T Consensus       494 cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  494 CNLLHCLQIVCDWTD  508 (966)
T ss_pred             hHHHHHHHHHhcccc
Confidence            888877766666655

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=6.7e-22  Score=182.15  Aligned_cols=357  Identities=16%  Similarity=0.169  Sum_probs=311.8

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchh-HHHHHH
Q 010881           53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDF-VLNGLL  130 (498)
Q Consensus        53 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~  130 (498)
                      ..+|..+...+-..|+++.|+.+|+.|.+  ++| ....|..+..++...|+.+.|.+.|.+.++..  |+.. ..+.+.
T Consensus       116 ae~ysn~aN~~kerg~~~~al~~y~~aie--l~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lg  191 (966)
T KOG4626|consen  116 AEAYSNLANILKERGQLQDALALYRAAIE--LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLG  191 (966)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHHHHh--cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchh
Confidence            45788899999999999999999999998  445 57789999999999999999999999999865  4433 344566


Q ss_pred             HHHHhCCChhhHHHHhhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhCCCHhHH
Q 010881          131 HLYATCNCMDPARKLFDMSVN--R-DVISWTSLINGYAKSGQISIARQMFDKMPEKN---AVSWSAMINGYVQVDLFKEA  204 (498)
Q Consensus       131 ~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a  204 (498)
                      ......|++.+|...|.+.++  | -..+|+.|...+-.+|+.-.|+..|++..+-|   ...|-.|...|...+.++.|
T Consensus       192 nLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~A  271 (966)
T KOG4626|consen  192 NLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRA  271 (966)
T ss_pred             HHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHH
Confidence            667778999999999988664  3 24689999999999999999999999987543   56899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010881          205 LEHFNYMQLCGFRPNH-AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN  283 (498)
Q Consensus       205 ~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  283 (498)
                      +..|.+....  .|+. ..+..+...|...|.++.|+..+++..+.. +.-...|+.|..++-..|++.+|.+.|.+...
T Consensus       272 vs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~  348 (966)
T KOG4626|consen  272 VSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALR  348 (966)
T ss_pred             HHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence            9999998874  5654 567777778889999999999999998875 44578999999999999999999999998775


Q ss_pred             ---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 010881          284 ---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-  359 (498)
Q Consensus       284 ---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  359 (498)
                         ....+.+.|...|...|.+++|..+|....+  +.|.           -....+.|...|...|++++|+..|++. 
T Consensus       349 l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~-----------~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal  415 (966)
T KOG4626|consen  349 LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPE-----------FAAAHNNLASIYKQQGNLDDAIMCYKEAL  415 (966)
T ss_pred             hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChh-----------hhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence               3567889999999999999999999999887  3444           3678899999999999999999999998 


Q ss_pred             CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          360 PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       360 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      .+.|+ ...|+.+...|...|+.+.|.+.+.+++..+|.-..++..|+.+|...|+..+|+.-++...+..
T Consensus       416 rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk  486 (966)
T KOG4626|consen  416 RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK  486 (966)
T ss_pred             hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence            88896 67899999999999999999999999999999999999999999999999999999999987654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.91  E-value=8e-20  Score=196.83  Aligned_cols=376  Identities=12%  Similarity=0.059  Sum_probs=269.9

Q ss_pred             HHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc---hHH--------
Q 010881           27 IGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY---TFS--------   92 (498)
Q Consensus        27 ~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~---~~~--------   92 (498)
                      ...+...  |++++|...|++...   .+...+..+..++.+.|++++|+..|++..+..  |+..   .+.        
T Consensus       276 G~~~~~~--g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~--p~~~~~~~~~~ll~~~~~  351 (1157)
T PRK11447        276 GLAAVDS--GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALD--PHSSNRDKWESLLKVNRY  351 (1157)
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccchhHHHHHHHhhhH
Confidence            4556667  999999999988652   367788899999999999999999999998743  4322   121        


Q ss_pred             ----HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--C-ChhhHHHHHHHHH
Q 010881           93 ----FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--R-DVISWTSLINGYA  165 (498)
Q Consensus        93 ----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~  165 (498)
                          .....+.+.|++++|...++++++..+ .+...+..+..++...|++++|.+.|++..+  | +...+..+...+.
T Consensus       352 ~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        352 WLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                123456788999999999999999864 3566777889999999999999999998763  2 4456666666664


Q ss_pred             ccCCHHHHHHHHhhCCCCC------------hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 010881          166 KSGQISIARQMFDKMPEKN------------AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-HAGIVGALTACAF  232 (498)
Q Consensus       166 ~~~~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~  232 (498)
                       .++.++|...++.+....            ...+..+...+...|++++|++.|++.++.  .|+ ...+..+...+..
T Consensus       431 -~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        431 -QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             -hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence             457888988888765321            223455667788889999999999998875  443 4556677788888


Q ss_pred             cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----Ch---------hHHHHHHHHHHhc
Q 010881          233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR----DV---------FAYTSLISGLANH  299 (498)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~  299 (498)
                      .|++++|...++.+.+.. +.+...+..+...+...++.++|...++.+...    +.         ..+..+...+...
T Consensus       508 ~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~  586 (1157)
T PRK11447        508 AGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS  586 (1157)
T ss_pred             cCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence            999999999999887654 445555555555667778888888888877532    11         1122344556677


Q ss_pred             CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010881          300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRV  377 (498)
Q Consensus       300 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  377 (498)
                      |+.++|..+++.      .|+           +...+..+...+.+.|++++|+..|++. ...| +...+..++..+..
T Consensus       587 G~~~eA~~~l~~------~p~-----------~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~  649 (1157)
T PRK11447        587 GKEAEAEALLRQ------QPP-----------STRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA  649 (1157)
T ss_pred             CCHHHHHHHHHh------CCC-----------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            777777777661      222           3455666777777777777777777776 4444 56667777777777


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      .|++++|++.++.+.+..|+++..+..++.++...|++++|.++++++.+.
T Consensus       650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence            777777777777777777777766777777777777777777777776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.90  E-value=4.9e-20  Score=186.52  Aligned_cols=245  Identities=12%  Similarity=0.044  Sum_probs=205.3

Q ss_pred             CCHHHHHHHHhhCCC-----C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHH
Q 010881          168 GQISIARQMFDKMPE-----K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-HAGIVGALTACAFLGALDQGR  240 (498)
Q Consensus       168 ~~~~~A~~~~~~~~~-----~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~  240 (498)
                      +++++|.+.|+...+     | ....|+.+...+...|++++|+..|++..+.  .|+ ...|..+...+...|++++|.
T Consensus       308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            578899999987763     2 4556888888999999999999999999875  455 457788888889999999999


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010881          241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGV  317 (498)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  317 (498)
                      ..++.+.+.. +.+..++..+...|...|++++|...|++..+   .+...+..+...+.+.|++++|+..|++....  
T Consensus       386 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--  462 (615)
T TIGR00990       386 EDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN--  462 (615)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--
Confidence            9999998875 66788999999999999999999999998865   35667888888999999999999999999874  


Q ss_pred             CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-H-------HHHHHHHHHHhcCCHHHHHHHH
Q 010881          318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDN-Y-------VLGALLNACRVHGDVDLGKETV  388 (498)
Q Consensus       318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~~~~g~~~~A~~~~  388 (498)
                      .|+           +...++.+..++...|++++|...|++. .+.|+. .       .++.....+...|++++|.+++
T Consensus       463 ~P~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~  531 (615)
T TIGR00990       463 FPE-----------APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLC  531 (615)
T ss_pred             CCC-----------ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            344           5788999999999999999999999987 444421 1       1222222344469999999999


Q ss_pred             HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +++++.+|++...+..++.++.+.|++++|++.|++..+.
T Consensus       532 ~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       532 EKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999999999888999999999999999999999998764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.90  E-value=1.4e-19  Score=195.06  Aligned_cols=404  Identities=12%  Similarity=-0.002  Sum_probs=314.5

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC--CCc---chHHH------------HHHHHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--RTT---FIWNT------------MIRGFA   64 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~   64 (498)
                      ++|...+..+++.. +.++.++..|..+|.+.  |++++|+..|++..+  |+.   ..|..            ....+.
T Consensus       286 ~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~--g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~  362 (1157)
T PRK11447        286 GKAIPELQQAVRAN-PKDSEALGALGQAYSQQ--GDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL  362 (1157)
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence            45677777777764 33778889999999999  999999999998653  321   12222            234677


Q ss_pred             hCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHH
Q 010881           65 EKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPAR  143 (498)
Q Consensus        65 ~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  143 (498)
                      +.|++++|+..|+++.+.  .| +...+..+...+...|++++|.+.|+++++..+. +...+..+...|. .++.++|.
T Consensus       363 ~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~  438 (1157)
T PRK11447        363 KANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKAL  438 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHH
Confidence            899999999999999984  34 4556777888999999999999999999987643 4556667777775 46789999


Q ss_pred             HHhhccCCCC------------hhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHH
Q 010881          144 KLFDMSVNRD------------VISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHF  208 (498)
Q Consensus       144 ~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~  208 (498)
                      .+++.+....            ...+..+...+...|++++|++.|++..+  | +...+..+...|.+.|++++|...|
T Consensus       439 ~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l  518 (1157)
T PRK11447        439 AFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALM  518 (1157)
T ss_pred             HHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            9988765321            22345567778899999999999998864  3 5667788899999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh---------hHHHHHHHHHHhcCCHHHHHHHHh
Q 010881          209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI---------ILGTAIIDMYAKCGCIETACSVFD  279 (498)
Q Consensus       209 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~~~  279 (498)
                      +++.+.. +.+...+..+...+...++.++|...++.+......++.         ..+..+...+...|+.++|..+++
T Consensus       519 ~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~  597 (1157)
T PRK11447        519 RRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR  597 (1157)
T ss_pred             HHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9998753 223334444444567789999999998876433222221         123355677889999999999999


Q ss_pred             hCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          280 SMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       280 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                      .- ..+...+..+...+.+.|++++|+..|++..+.  .|+           +...+..++.+|...|++++|++.++..
T Consensus       598 ~~-p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~-----------~~~a~~~la~~~~~~g~~~eA~~~l~~l  663 (1157)
T PRK11447        598 QQ-PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPG-----------NADARLGLIEVDIAQGDLAAARAQLAKL  663 (1157)
T ss_pred             hC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            43 345567788899999999999999999999884  455           5889999999999999999999999988


Q ss_pred             -CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          360 -PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE------GVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       360 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                       ...| +...+..+..++...|++++|.+++++++...|+++      ..+..++.++...|++++|...|++...
T Consensus       664 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        664 PATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             hccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             5555 566677788889999999999999999998776543      2556678999999999999999998864

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=3.4e-20  Score=178.29  Aligned_cols=300  Identities=12%  Similarity=0.044  Sum_probs=202.2

Q ss_pred             HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 010881           98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF  177 (498)
Q Consensus        98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~  177 (498)
                      +...|+++.|...++++.+.++ .+..++..+...+...|++++|..+++.+.......-                    
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~--------------------  103 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTR--------------------  103 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCH--------------------
Confidence            4455566666666666665432 2334455555555555555555555544332100000                    


Q ss_pred             hhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---
Q 010881          178 DKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD---  254 (498)
Q Consensus       178 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---  254 (498)
                          ......+..++..|.+.|++++|..+|+++.+.. +++..++..++..+...|++++|...++.+.+.+-.+.   
T Consensus       104 ----~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  178 (389)
T PRK11788        104 ----EQRLLALQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE  178 (389)
T ss_pred             ----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH
Confidence                0001345556666666666666666666666542 33455666666666666666666666666665432211   


Q ss_pred             -hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881          255 -IILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE  330 (498)
Q Consensus       255 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~  330 (498)
                       ...+..+...+.+.|++++|...|+++.+  | +...+..+...+.+.|++++|..+++++...+  |+          
T Consensus       179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--p~----------  246 (389)
T PRK11788        179 IAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD--PE----------  246 (389)
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--hh----------
Confidence             12345667777888888888888887764  2 45577778888999999999999999988742  21          


Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      ....++..++.+|...|++++|...++++ ...|+...+..++..+.+.|++++|..+++++++..|++. .+..+...+
T Consensus       247 ~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~  325 (389)
T PRK11788        247 YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYH  325 (389)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHh
Confidence            12466788999999999999999999998 5568777778889999999999999999999999988876 444444444


Q ss_pred             Hh---cCCcchHHHHHHhhhhCCccccCce
Q 010881          410 AS---TEQWNGVEKVRRGMEDNEVRKVPGC  436 (498)
Q Consensus       410 ~~---~g~~~~a~~~~~~m~~~~~~~~~~~  436 (498)
                      ..   .|+.+++..++++|.++++.++|..
T Consensus       326 ~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~  355 (389)
T PRK11788        326 LAEAEEGRAKESLLLLRDLVGEQLKRKPRY  355 (389)
T ss_pred             hhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence            43   5689999999999999999888874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.88  E-value=2.7e-18  Score=177.02  Aligned_cols=403  Identities=10%  Similarity=0.029  Sum_probs=307.1

Q ss_pred             CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHH
Q 010881           17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFS   92 (498)
Q Consensus        17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~   92 (498)
                      +-++....-.+.+....  |+.++|.+++.....   .+...+..+...+...|++++|..+|++..+.  .| +...+.
T Consensus        12 ~~~~~~~~d~~~ia~~~--g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~   87 (765)
T PRK10049         12 ALSNNQIADWLQIALWA--GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQR   87 (765)
T ss_pred             CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence            44556667777888888  999999999998763   23445889999999999999999999999883  35 455677


Q ss_pred             HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--C-ChhhHHHHHHHHHccCC
Q 010881           93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--R-DVISWTSLINGYAKSGQ  169 (498)
Q Consensus        93 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~  169 (498)
                      .+...+...|++++|...++++++..+. +.. +..+..++...|+.++|...+++...  | +...+..+...+...+.
T Consensus        88 ~la~~l~~~g~~~eA~~~l~~~l~~~P~-~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~  165 (765)
T PRK10049         88 GLILTLADAGQYDEALVKAKQLVSGAPD-KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL  165 (765)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            7888899999999999999999988543 445 88888999999999999999998764  3 55666778888889999


Q ss_pred             HHHHHHHHhhCCCCChh--------HHHHHHHHHHh-----CCCH---hHHHHHHHHHHHc-CCCCCHH-HHH----HHH
Q 010881          170 ISIARQMFDKMPEKNAV--------SWSAMINGYVQ-----VDLF---KEALEHFNYMQLC-GFRPNHA-GIV----GAL  227 (498)
Q Consensus       170 ~~~A~~~~~~~~~~~~~--------~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-g~~p~~~-~~~----~ll  227 (498)
                      .+.|++.++.... ++.        ....++.....     .+++   ++|+..++.+.+. ...|+.. .+.    ..+
T Consensus       166 ~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l  244 (765)
T PRK10049        166 SAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRL  244 (765)
T ss_pred             hHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHH
Confidence            9999999998775 211        12223333222     2234   7789999998854 2233322 111    113


Q ss_pred             HHHhccCChHHHHHHHHHHHHhCCC-CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhHHHHHHHHHHhc
Q 010881          228 TACAFLGALDQGRWIHAYVDRNGIE-LDIILGTAIIDMYAKCGCIETACSVFDSMPNRD-------VFAYTSLISGLANH  299 (498)
Q Consensus       228 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~  299 (498)
                      .++...|++++|...|+.+.+.+-+ |+ .....+..+|...|++++|...|+++...+       ......+..++...
T Consensus       245 ~~Ll~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~  323 (765)
T PRK10049        245 GALLARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLES  323 (765)
T ss_pred             HHHHHhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhc
Confidence            4556779999999999999887622 22 122335778999999999999999876422       23456667788999


Q ss_pred             CChHHHHHHHHHHHHcCCCCCchh-hhhhCCCCC---hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010881          300 DQSASAIELFMRMQLEGVVPNESM-SEIYGIEPG---VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLN  373 (498)
Q Consensus       300 ~~~~~a~~~~~~m~~~~~~p~~~~-~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  373 (498)
                      |++++|..+++++....  |.... .....-.|+   ...+..+...+...|++++|+++++++ ...| +...+..+..
T Consensus       324 g~~~eA~~~l~~~~~~~--P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~  401 (765)
T PRK10049        324 ENYPGALTVTAHTINNS--PPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS  401 (765)
T ss_pred             ccHHHHHHHHHHHhhcC--CceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            99999999999998752  21100 000011233   245667888999999999999999998 4445 6788889999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      .+...|++++|++.++++++..|++..++..++..+...|++++|..+++++.+..
T Consensus       402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999997643

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=9.1e-19  Score=176.73  Aligned_cols=347  Identities=10%  Similarity=-0.048  Sum_probs=279.0

Q ss_pred             CChhHHHHHhhhcCCC------CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHH
Q 010881           36 GDLSHGYRLFVCLQYR------TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLI  109 (498)
Q Consensus        36 g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~  109 (498)
                      .+++.---.|..-++.      +..-.-.++..+.++|+++.|..+++........ +...+..++.+....|+++.|..
T Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~   97 (656)
T PRK15174         19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQ   97 (656)
T ss_pred             hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHH
Confidence            6777766666655532      3334556677888999999999999999885432 34455666677778999999999


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhCC--CC-
Q 010881          110 CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--R-DVISWTSLINGYAKSGQISIARQMFDKMP--EK-  183 (498)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~--~~-  183 (498)
                      .++++.+..+. +...+..+...+...|++++|...+++...  | +...+..+...+...|++++|...++.+.  .| 
T Consensus        98 ~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~  176 (656)
T PRK15174         98 VVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP  176 (656)
T ss_pred             HHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC
Confidence            99999998643 566788889999999999999999998763  3 56788899999999999999999998764  23 


Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      +...+..+ ..+...|++++|...++.+.+....++......+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus       177 ~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~  254 (656)
T PRK15174        177 RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGL  254 (656)
T ss_pred             CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            33344333 3578899999999999998876544455555666778889999999999999998875 667788889999


Q ss_pred             HHHhcCCHHH----HHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881          264 MYAKCGCIET----ACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY  336 (498)
Q Consensus       264 ~~~~~g~~~~----A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~  336 (498)
                      +|...|++++    |...|+++..  | +...+..+...+...|++++|...+++....  .|+           +...+
T Consensus       255 ~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~-----------~~~a~  321 (656)
T PRK15174        255 AYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPD-----------LPYVR  321 (656)
T ss_pred             HHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------CHHHH
Confidence            9999999986    7888988764  3 5678999999999999999999999999874  455           46778


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          337 GCLVDLLGRAGMLEAAKKVVREM-PIEPDNYV-LGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       337 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      ..+..++...|++++|...++++ ...|+... +..+..++...|+.++|...|+++++..|++.
T Consensus       322 ~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        322 AMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            88999999999999999999988 55675433 44456778999999999999999999998854

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.88  E-value=5.1e-19  Score=178.55  Aligned_cols=351  Identities=13%  Similarity=0.008  Sum_probs=280.9

Q ss_pred             HhCCCchHHHHHHHHhHHC--CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhh
Q 010881           64 AEKNEPIKAFALYKQMLRS--DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP  141 (498)
Q Consensus        64 ~~~~~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  141 (498)
                      .++.+++.---.|....++  .-.-+......++..+.+.|+++.|..+++..+...+.+ ...+..++.+....|++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHH
Confidence            4455666554455544332  111234445667788899999999999999999987664 4445556677778999999


Q ss_pred             HHHHhhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881          142 ARKLFDMSVN--R-DVISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCG  215 (498)
Q Consensus       142 a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  215 (498)
                      |.+.|+++..  | +...+..+...+.+.|++++|...|++...  | +...+..+...+...|++++|...++.+....
T Consensus        95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~  174 (656)
T PRK15174         95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV  174 (656)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence            9999998763  3 567888899999999999999999998864  3 56788889999999999999999999887754


Q ss_pred             CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHH
Q 010881          216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSL  292 (498)
Q Consensus       216 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l  292 (498)
                        |+.......+..+...|++++|...++.+.+..-.++......+..++...|++++|...|+++..   .+...+..+
T Consensus       175 --P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L  252 (656)
T PRK15174        175 --PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL  252 (656)
T ss_pred             --CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence              333222222344788999999999999987764334445556667889999999999999998765   356788889


Q ss_pred             HHHHHhcCChHH----HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 010881          293 ISGLANHDQSAS----AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNY  366 (498)
Q Consensus       293 i~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~  366 (498)
                      ...+...|++++    |...|++..+.  .|+           +...+..+...+...|++++|...+++. ...| +..
T Consensus       253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~-----------~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~  319 (656)
T PRK15174        253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSD-----------NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPY  319 (656)
T ss_pred             HHHHHHcCCchhhHHHHHHHHHHHHhh--CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            999999999986    89999999874  455           5889999999999999999999999998 5556 566


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      .+..+..++...|++++|+..++++.+.+|++...+..++.++...|++++|...|++..+...
T Consensus       320 a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        320 VRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            7778889999999999999999999999999876677788899999999999999999876543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.88  E-value=1.1e-17  Score=172.81  Aligned_cols=241  Identities=12%  Similarity=0.045  Sum_probs=155.6

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHH
Q 010881          220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLA  297 (498)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~  297 (498)
                      ...+..+..++.. ++.++|...+.......  |+......+...+...|++++|...|+++..  ++...+..+...+.
T Consensus       477 ~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all  553 (987)
T PRK09782        477 AAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ  553 (987)
T ss_pred             HHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH
Confidence            3344444444443 56666666555555442  3433333333444566666666666665543  23334445555556


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCc----------------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 010881          298 NHDQSASAIELFMRMQLEGVVPNE----------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV  355 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~~~~p~~----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  355 (498)
                      +.|+.++|...+++..+..  |+.                      .+.+.....|+...|..+..++.+.|++++|...
T Consensus       554 ~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~  631 (987)
T PRK09782        554 AAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSD  631 (987)
T ss_pred             HCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            6666666666666655432  222                      1111223456778888999999999999999999


Q ss_pred             HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcccc
Q 010881          356 VREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKV  433 (498)
Q Consensus       356 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~  433 (498)
                      +++. ...| +...+..+..++...|++++|+..++++++..|+++.++..++.++...|++++|...+++..+....  
T Consensus       632 l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~--  709 (987)
T PRK09782        632 LRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN--  709 (987)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--
Confidence            9988 5566 56777788888999999999999999999999999999999999999999999999999888765421  


Q ss_pred             CceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcC-cccCC
Q 010881          434 PGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLC-FFDDG  481 (498)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~~~~~  481 (498)
                      ..              ......++.......+.+..+.+...- +.|+.
T Consensus       710 ~a--------------~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~  744 (987)
T PRK09782        710 QA--------------LITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDS  744 (987)
T ss_pred             Cc--------------hhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            11              001123455555556666666666554 33433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=3.6e-19  Score=171.23  Aligned_cols=288  Identities=17%  Similarity=0.130  Sum_probs=215.5

Q ss_pred             HHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHh
Q 010881           60 IRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESY---DFVLNGLLHLYAT  135 (498)
Q Consensus        60 i~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~  135 (498)
                      ...+...|++++|+..|+++.+.+  | +..++..+...+...|++++|..+++.+.+.+..++   ...+..+...|.+
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~  119 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLK  119 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence            445667899999999999999853  4 455788889999999999999999999987542222   1234444555555


Q ss_pred             CCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881          136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQ  212 (498)
Q Consensus       136 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  212 (498)
                      .|+++                               .|..+|+++.+   .+..+++.++..+.+.|++++|.+.++.+.
T Consensus       120 ~g~~~-------------------------------~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  168 (389)
T PRK11788        120 AGLLD-------------------------------RAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLE  168 (389)
T ss_pred             CCCHH-------------------------------HHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            55554                               45455444432   345567777777777888888888888777


Q ss_pred             HcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-
Q 010881          213 LCGFRPNH----AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD-  285 (498)
Q Consensus       213 ~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-  285 (498)
                      +.+..++.    ..+..+...+...|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|+++.+  |+ 
T Consensus       169 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~  247 (389)
T PRK11788        169 KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY  247 (389)
T ss_pred             HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh
Confidence            65433322    134455666677888888888888887664 44566777888889999999999999988774  33 


Q ss_pred             -hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          286 -VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       286 -~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                       ..+++.++.+|...|+.++|...++++.+.  .|            +...+..++..+.+.|++++|..+++++ ...|
T Consensus       248 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p------------~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P  313 (389)
T PRK11788        248 LSEVLPKLMECYQALGDEAEGLEFLRRALEE--YP------------GADLLLALAQLLEEQEGPEAAQALLREQLRRHP  313 (389)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CC------------CchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence             346788899999999999999999999875  23            3456688999999999999999999987 6679


Q ss_pred             CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcC
Q 010881          364 DNYVLGALLNACRV---HGDVDLGKETVESLVERS  395 (498)
Q Consensus       364 ~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~  395 (498)
                      +..+++.++..+..   .|+.+++..+++++++..
T Consensus       314 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~  348 (389)
T PRK11788        314 SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ  348 (389)
T ss_pred             CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence            99999988887664   558999999999988733

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.85  E-value=1.6e-17  Score=168.24  Aligned_cols=364  Identities=12%  Similarity=-0.015  Sum_probs=276.9

Q ss_pred             HHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHH
Q 010881           23 VGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACA   99 (498)
Q Consensus        23 ~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~   99 (498)
                      +......|.+.  |+++.|...|++..  .|+...|..+..+|.+.|++++|+..+++..+.  .| +...|..+..++.
T Consensus       130 ~k~~G~~~~~~--~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       130 LKEKGNKAYRN--KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence            34556677788  99999999998865  467778888888999999999999999999884  45 4557888888899


Q ss_pred             ccCCcHHHHHHHHHHHHhCCC-----------------------------CchhHHHHH---------------------
Q 010881          100 DTSCLFVGLICHAQVIRLGWE-----------------------------SYDFVLNGL---------------------  129 (498)
Q Consensus       100 ~~g~~~~a~~~~~~~~~~~~~-----------------------------~~~~~~~~l---------------------  129 (498)
                      ..|++++|...+..+...+..                             ++...+..+                     
T Consensus       206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            999999887655443221110                             000000000                     


Q ss_pred             ---------HHHH------HhCCChhhHHHHhhccCCC------ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-Ch
Q 010881          130 ---------LHLY------ATCNCMDPARKLFDMSVNR------DVISWTSLINGYAKSGQISIARQMFDKMPE--K-NA  185 (498)
Q Consensus       130 ---------~~~~------~~~g~~~~a~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~  185 (498)
                               +..+      ...+++++|.+.|++....      +...|+.+...+...|++++|+..|++..+  | +.
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~  365 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT  365 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence                     0000      1235788888988876532      345688888889999999999999998864  3 35


Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY  265 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  265 (498)
                      ..|..+...+...|++++|...|++..+.. +-+...+..+...+...|++++|...|+...+.. +.+...+..+..++
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~  443 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHH
Confidence            678888999999999999999999998763 3346788888889999999999999999998875 56677888899999


Q ss_pred             HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh-HHHHHHHH
Q 010881          266 AKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-QHYGCLVD  341 (498)
Q Consensus       266 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~-~~~~~l~~  341 (498)
                      .+.|++++|...|+....   .+...|+.+...+...|++++|...|++.....  |+.     .....+. ..++....
T Consensus       444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~-----~~~~~~~~~l~~~a~~  516 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KET-----KPMYMNVLPLINKALA  516 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--Ccc-----ccccccHHHHHHHHHH
Confidence            999999999999998764   457789999999999999999999999988742  321     0011111 12233333


Q ss_pred             HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          342 LLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       342 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      .+...|++++|.+++++. ...| +...+..+...+...|++++|+..|+++.++.+...
T Consensus       517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~  576 (615)
T TIGR00990       517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG  576 (615)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence            445579999999999997 5556 456788899999999999999999999999877644

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.85  E-value=4.1e-17  Score=168.30  Aligned_cols=377  Identities=11%  Similarity=0.020  Sum_probs=286.3

Q ss_pred             hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881            3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQM   79 (498)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m   79 (498)
                      +|.+++....... +.+...+..+..++.+.  |++++|..+++...   ..+...+..+...+...|++++|+..++++
T Consensus        33 ~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~  109 (765)
T PRK10049         33 EVITVYNRYRVHM-QLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQL  109 (765)
T ss_pred             HHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            4556666666522 34455688899999999  99999999999853   445677888889999999999999999999


Q ss_pred             HHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChh----
Q 010881           80 LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVI----  155 (498)
Q Consensus        80 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----  155 (498)
                      .+.  .|+...+..+..++...|+++.|...++++++..+. +...+..+..++...+..+.|.+.++.... ++.    
T Consensus       110 l~~--~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~  185 (765)
T PRK10049        110 VSG--APDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRD  185 (765)
T ss_pred             HHh--CCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHH
Confidence            884  343333778888899999999999999999998755 555666688888899999999999987765 211    


Q ss_pred             ----hHHHHHHHHH-----ccCCH---HHHHHHHhhCCC-----CChh-HHH----HHHHHHHhCCCHhHHHHHHHHHHH
Q 010881          156 ----SWTSLINGYA-----KSGQI---SIARQMFDKMPE-----KNAV-SWS----AMINGYVQVDLFKEALEHFNYMQL  213 (498)
Q Consensus       156 ----~~~~li~~~~-----~~~~~---~~A~~~~~~~~~-----~~~~-~~~----~li~~~~~~g~~~~a~~~~~~m~~  213 (498)
                          ....++....     ..+++   ++|++.++.+.+     |+.. .+.    ..+..+...|++++|+..|+++.+
T Consensus       186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~  265 (765)
T PRK10049        186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA  265 (765)
T ss_pred             HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence                1222222222     12234   677777777662     2211 111    113345677999999999999998


Q ss_pred             cCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC----hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---
Q 010881          214 CGFR-PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD----IILGTAIIDMYAKCGCIETACSVFDSMPNRD---  285 (498)
Q Consensus       214 ~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---  285 (498)
                      .+.. |+. .-..+...+...|++++|...++.+.+.. +.+    ......+..++...|++++|...++.+...+   
T Consensus       266 ~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~  343 (765)
T PRK10049        266 EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPF  343 (765)
T ss_pred             cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCce
Confidence            7632 433 22235678899999999999999987653 212    2455667778899999999999999876521   


Q ss_pred             ---------------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881          286 ---------------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE  350 (498)
Q Consensus       286 ---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  350 (498)
                                     ...+..+...+...|+.++|+.+++++...  .|+           +...+..++..+...|+++
T Consensus       344 ~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~-----------n~~l~~~lA~l~~~~g~~~  410 (765)
T PRK10049        344 LRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APG-----------NQGLRIDYASVLQARGWPR  410 (765)
T ss_pred             EeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHhcCCHH
Confidence                           124456777889999999999999999874  455           5789999999999999999


Q ss_pred             HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881          351 AAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV  401 (498)
Q Consensus       351 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  401 (498)
                      +|++.+++. ...|+ ...+..++..+...|++++|+.+++++++..|+++.+
T Consensus       411 ~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        411 AAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            999999998 66674 6677777778999999999999999999999999843

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.81  E-value=1.6e-15  Score=153.87  Aligned_cols=201  Identities=12%  Similarity=0.098  Sum_probs=164.7

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---------ChhHHHHHHHH
Q 010881          225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---------DVFAYTSLISG  295 (498)
Q Consensus       225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~  295 (498)
                      -.+-++...+++.+++..++.+...+.+....+-.++.++|...++.++|..+|+.+..+         +......|.-+
T Consensus       297 Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA  376 (822)
T PRK14574        297 DRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYS  376 (822)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHH
Confidence            345567788999999999999999887766778889999999999999999999988542         22335678889


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCchhhhhh-----CCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 010881          296 LANHDQSASAIELFMRMQLEGVVPNESMSEIY-----GIEPG-VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYV  367 (498)
Q Consensus       296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~  367 (498)
                      |...+++++|..+++++.+.  .|-  ....+     ...|| ...+..++..+...|++.+|++.++++ ...| |...
T Consensus       377 ~ld~e~~~~A~~~l~~~~~~--~p~--~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l  452 (822)
T PRK14574        377 LNESEQLDKAYQFAVNYSEQ--TPY--QVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNL  452 (822)
T ss_pred             HHhcccHHHHHHHHHHHHhc--CCc--EEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            99999999999999999873  221  00001     12233 344555678889999999999999999 4455 8888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...+...+...|.+.+|++.++.+..+.|++..+....+.++...|+|++|..+.+...+..
T Consensus       453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~  514 (822)
T PRK14574        453 RIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRS  514 (822)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999887776543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.76  E-value=1.7e-14  Score=149.36  Aligned_cols=381  Identities=12%  Similarity=0.045  Sum_probs=280.4

Q ss_pred             HHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHH--HHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCC
Q 010881           26 IIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRG--FAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC  103 (498)
Q Consensus        26 l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  103 (498)
                      ++..+.+.  ++++.|.++.+. ...+. .  ..++.  ....+...++...+..|.+.. +-+......+--.....|+
T Consensus       319 ~~~~~~~~--~~~~~~~~~~~~-~~~~~-~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~  391 (987)
T PRK09782        319 TLPVLLKE--GQYDAAQKLLAT-LPANE-M--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQ  391 (987)
T ss_pred             HHHHHHhc--cHHHHHHHHhcC-CCcch-H--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccc
Confidence            35666777  788877766442 22222 1  23322  223466677777777777631 1244444444455677888


Q ss_pred             cHHHHHHHHHHHHh-C-CCCchhHHHHHHHHHHhCCChh---hHHHH-------------------------hhccC---
Q 010881          104 LFVGLICHAQVIRL-G-WESYDFVLNGLLHLYATCNCMD---PARKL-------------------------FDMSV---  150 (498)
Q Consensus       104 ~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~---~a~~~-------------------------~~~~~---  150 (498)
                      .++|.++++..... + -.++.....-++..|.+.+..+   ++..+                         +....   
T Consensus       392 ~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  471 (987)
T PRK09782        392 SREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDM  471 (987)
T ss_pred             HHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccC
Confidence            99999998888763 1 1234445557778887776632   23222                         11111   


Q ss_pred             CC--ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010881          151 NR--DVISWTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA  226 (498)
Q Consensus       151 ~~--~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  226 (498)
                      .+  +...|..+..++.. ++.++|...|.+...  |+......+...+...|++++|...|+++...  .|+...+..+
T Consensus       472 p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~l  548 (987)
T PRK09782        472 SPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAA  548 (987)
T ss_pred             CCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHH
Confidence            12  45667777777776 788889997776653  44333333344556899999999999998654  4555566677


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHH
Q 010881          227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSAS  304 (498)
Q Consensus       227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~  304 (498)
                      ...+...|+.++|...++...+.. +.+...+..+.......|++++|...+++..+  |+...|..+...+.+.|+.++
T Consensus       549 a~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~de  627 (987)
T PRK09782        549 ANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPA  627 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHH
Confidence            778889999999999999998765 44444444444555567999999999998875  677889999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 010881          305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVD  382 (498)
Q Consensus       305 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~  382 (498)
                      |...+++....  .|+           +...++.+..++...|++++|+..+++. ...| +...+..+..++...|+++
T Consensus       628 A~~~l~~AL~l--~Pd-----------~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        628 AVSDLRAALEL--EPN-----------NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            99999999884  555           5788999999999999999999999998 5566 6788999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       383 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      +|+..++++++..|++..+....+....+..+++.|.+-+++.-..++
T Consensus       695 eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        695 ATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            999999999999999999999999999999999999998877765444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.74  E-value=1.2e-14  Score=141.72  Aligned_cols=392  Identities=13%  Similarity=0.068  Sum_probs=233.0

Q ss_pred             CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCC------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcch
Q 010881           17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT------TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT   90 (498)
Q Consensus        17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~   90 (498)
                      ..+|.+.+.|.+.|-..  |+++.+..+.+.+...+      ..+|-.+.++|-..|++++|...|.+..+.  .|+.++
T Consensus       267 ~~nP~~l~~LAn~fyfK--~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~  342 (1018)
T KOG2002|consen  267 NENPVALNHLANHFYFK--KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFV  342 (1018)
T ss_pred             CCCcHHHHHHHHHHhhc--ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCcc
Confidence            34777888888888777  88888888887765432      345777888888888999998888887763  355444


Q ss_pred             --HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhhHHHHhhccCCC---ChhhHHHHH
Q 010881           91 --FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN----CMDPARKLFDMSVNR---DVISWTSLI  161 (498)
Q Consensus        91 --~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~---~~~~~~~li  161 (498)
                        +--|...+...|+++.+...|+.+.+..+ .+..+...|...|...+    ..+.|..++.+...+   |...|..+.
T Consensus       343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p-~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la  421 (1018)
T KOG2002|consen  343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLP-NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA  421 (1018)
T ss_pred             ccccchhHHHHHhchHHHHHHHHHHHHHhCc-chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence              34466778888888888888888888753 35566666666676664    567777777766544   555666666


Q ss_pred             HHHHccCCH------HHHHHHHhhC-CCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc---CCCCCH------HHHHH
Q 010881          162 NGYAKSGQI------SIARQMFDKM-PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC---GFRPNH------AGIVG  225 (498)
Q Consensus       162 ~~~~~~~~~------~~A~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~------~~~~~  225 (498)
                      ..+....-+      ..|..++..- ....+...|.+...+...|++++|...|+.....   ...++.      .+-..
T Consensus       422 ql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN  501 (1018)
T KOG2002|consen  422 QLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN  501 (1018)
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH
Confidence            655443322      2333333222 2346677888888888889999998888887654   122332      22223


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCCh
Q 010881          226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQS  302 (498)
Q Consensus       226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~  302 (498)
                      +....-..++.+.|...|..+.+.. +--+..|..+.-..-..+...+|...++.+..   .++..++.+...|.....+
T Consensus       502 larl~E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~  580 (1018)
T KOG2002|consen  502 LARLLEELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEW  580 (1018)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhh
Confidence            4444456678888888888887763 22233333343223334677788888877664   5667777777778777777


Q ss_pred             HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHh------------hcCCHHHHHHHHHhC-CCCC-CHHHH
Q 010881          303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG------------RAGMLEAAKKVVREM-PIEP-DNYVL  368 (498)
Q Consensus       303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~------------~~g~~~~A~~~~~~~-~~~p-~~~~~  368 (498)
                      ..|..-|......-..-           +|..+.-.|.+.|.            ..+..++|+++|.+. ...| |...-
T Consensus       581 ~~a~k~f~~i~~~~~~~-----------~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAA  649 (1018)
T KOG2002|consen  581 KPAKKKFETILKKTSTK-----------TDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAA  649 (1018)
T ss_pred             cccccHHHHHHhhhccC-----------CchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhc
Confidence            77777666665532111           22333333333222            112334444444443 2223 33333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881          369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM  425 (498)
Q Consensus       369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  425 (498)
                      +-+.-.++..|++..|..+|.++.+...+.+.+|..++++|..+|+|-.|+++|+..
T Consensus       650 NGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~  706 (1018)
T KOG2002|consen  650 NGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC  706 (1018)
T ss_pred             cchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444443333334444444444444444444444443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.74  E-value=9.2e-14  Score=141.16  Aligned_cols=379  Identities=11%  Similarity=0.036  Sum_probs=287.3

Q ss_pred             hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCC-cchHHHH--HHHHHhCCCchHHHHHHHHh
Q 010881            3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT-TFIWNTM--IRGFAEKNEPIKAFALYKQM   79 (498)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l--i~~~~~~~~~~~A~~~~~~m   79 (498)
                      .|...+..+++......+.++ .++..+...  |+.++|+..+++...|+ ...+..+  ...+...|++++|+++|+++
T Consensus        52 ~Al~~L~qaL~~~P~~~~av~-dll~l~~~~--G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~ka  128 (822)
T PRK14574         52 PVLDYLQEESKAGPLQSGQVD-DWLQIAGWA--GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSS  128 (822)
T ss_pred             HHHHHHHHHHhhCccchhhHH-HHHHHHHHc--CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            566777777766533223344 888999999  99999999999988664 3444444  45778889999999999999


Q ss_pred             HHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--C-Chh
Q 010881           80 LRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--R-DVI  155 (498)
Q Consensus        80 ~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~  155 (498)
                      .+..  | +...+..++..+...++.++|+..++.+....  |+...+..++..+...++..+|.+.++++..  | +..
T Consensus       129 L~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e  204 (822)
T PRK14574        129 LKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEE  204 (822)
T ss_pred             HhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHH
Confidence            8843  4 45667777888899999999999999998875  3444455555555556677669999988763  3 445


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHhhCC------------------------------------------------C-----
Q 010881          156 SWTSLINGYAKSGQISIARQMFDKMP------------------------------------------------E-----  182 (498)
Q Consensus       156 ~~~~li~~~~~~~~~~~A~~~~~~~~------------------------------------------------~-----  182 (498)
                      .+..+..++.+.|-...|.++..+-+                                                .     
T Consensus       205 ~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~  284 (822)
T PRK14574        205 VLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKD  284 (822)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCC
Confidence            55666666555554444444433222                                                1     


Q ss_pred             CCh-h----HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC-----CC
Q 010881          183 KNA-V----SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG-----IE  252 (498)
Q Consensus       183 ~~~-~----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~  252 (498)
                      |.. .    ...-.+-++...|++.++++.|+.+...|.+....+-..+..+|...+.+++|..++..+....     .+
T Consensus       285 p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~  364 (822)
T PRK14574        285 PEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNS  364 (822)
T ss_pred             CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCC
Confidence            111 1    1123355778899999999999999999877677788899999999999999999999987643     12


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-------------Ch---hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881          253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-------------DV---FAYTSLISGLANHDQSASAIELFMRMQL  314 (498)
Q Consensus       253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-------------~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~  314 (498)
                      ++......|.-+|...+++++|..+++.+.+  |             |.   ..+..++..+...|+..+|++.++++..
T Consensus       365 ~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~  444 (822)
T PRK14574        365 DDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS  444 (822)
T ss_pred             cchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444467899999999999999999998875  1             11   2344567778899999999999999977


Q ss_pred             cCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010881          315 EGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLV  392 (498)
Q Consensus       315 ~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  392 (498)
                      .  .|.           |......+.+.+...|.+.+|++.++.. ...| +..+....+.++...+++++|..+.+.+.
T Consensus       445 ~--aP~-----------n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~  511 (822)
T PRK14574        445 T--APA-----------NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVI  511 (822)
T ss_pred             h--CCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4  444           7899999999999999999999999877 5667 56677778888899999999999999999


Q ss_pred             hcCCCCchH
Q 010881          393 ERSLDHEGV  401 (498)
Q Consensus       393 ~~~~~~~~~  401 (498)
                      +..|++..+
T Consensus       512 ~~~Pe~~~~  520 (822)
T PRK14574        512 SRSPEDIPS  520 (822)
T ss_pred             hhCCCchhH
Confidence            999998843

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=1.2e-13  Score=122.86  Aligned_cols=275  Identities=12%  Similarity=0.072  Sum_probs=151.8

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHH-H-----------------------HhhhcCCCCcchHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGY-R-----------------------LFVCLQYRTTFIWN   57 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~-~-----------------------~~~~~~~~~~~~~~   57 (498)
                      +.+--++..|...|.+.++.+--.|++..+-....++.-|+ +                       ++-+...++..+|.
T Consensus       132 KDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s  211 (625)
T KOG4422|consen  132 KDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDETVS  211 (625)
T ss_pred             chhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCchhHH
Confidence            34455788888999888887766665443222002222221 1                       22222334567888


Q ss_pred             HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 010881           58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN  137 (498)
Q Consensus        58 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  137 (498)
                      .+|.++|+--..+.|.++|++......+.+..+||.+|.+-+-.    ..++++.+|......||..|+|+++.+.++.|
T Consensus       212 ~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg  287 (625)
T KOG4422|consen  212 IMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNALLSCAAKFG  287 (625)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhc
Confidence            88888888888888888888888777777888888888764432    23778888888888888888888888888888


Q ss_pred             ChhhHHHHhh----cc----CCCChhhHHHHHHHHHccCCHHH-HHHHHhhCCC-----------C-ChhHHHHHHHHHH
Q 010881          138 CMDPARKLFD----MS----VNRDVISWTSLINGYAKSGQISI-ARQMFDKMPE-----------K-NAVSWSAMINGYV  196 (498)
Q Consensus       138 ~~~~a~~~~~----~~----~~~~~~~~~~li~~~~~~~~~~~-A~~~~~~~~~-----------~-~~~~~~~li~~~~  196 (498)
                      +++.|...+-    +|    ++|...+|..+|..+++.++..+ |..++.++..           | +...|..-|..|.
T Consensus       288 ~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~  367 (625)
T KOG4422|consen  288 KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS  367 (625)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence            8777654432    22    34555555555555555554422 2222222210           1 2233344444444


Q ss_pred             hCCCHhHHHHHHHHHHHcC-----CCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010881          197 QVDLFKEALEHFNYMQLCG-----FRPN---HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC  268 (498)
Q Consensus       197 ~~g~~~~a~~~~~~m~~~g-----~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  268 (498)
                      +..+.+-|.++-.-+. .|     +.|+   ..-|..+....|.....+.....|..|.-.-.-|+..+...++++....
T Consensus       368 ~l~d~~LA~~v~~ll~-tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~  446 (625)
T KOG4422|consen  368 SLRDLELAYQVHGLLK-TGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVA  446 (625)
T ss_pred             HhhhHHHHHHHHHHHH-cCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhc
Confidence            4444444444433222 11     1111   1123333444444444444444444444444444444444445544444


Q ss_pred             CCHHHHHHHHhhC
Q 010881          269 GCIETACSVFDSM  281 (498)
Q Consensus       269 g~~~~A~~~~~~~  281 (498)
                      |.++-.-+++..+
T Consensus       447 ~~~e~ipRiw~D~  459 (625)
T KOG4422|consen  447 NRLEVIPRIWKDS  459 (625)
T ss_pred             CcchhHHHHHHHH
Confidence            4444444444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=1.5e-14  Score=130.78  Aligned_cols=353  Identities=14%  Similarity=0.021  Sum_probs=252.7

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 010881           56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN-NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA  134 (498)
Q Consensus        56 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  134 (498)
                      +.....-|.++|++++|++.|.+.++  ..|| +..|.....+|...|+|+++.+.-...++..+. -+..+..-..++-
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~-Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPD-YVKALLRRASAHE  194 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcH-HHHHHHHHHHHHH
Confidence            44455678889999999999999998  6688 777888889999999999998887777776533 2334455556666


Q ss_pred             hCCChhhHHHH----------------------hhc---------cC---C---CChhhHHHHHHHHH------------
Q 010881          135 TCNCMDPARKL----------------------FDM---------SV---N---RDVISWTSLINGYA------------  165 (498)
Q Consensus       135 ~~g~~~~a~~~----------------------~~~---------~~---~---~~~~~~~~li~~~~------------  165 (498)
                      ..|++++|+.=                      +..         +.   .   |+....++....+-            
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~  274 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD  274 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence            66666665331                      110         11   1   11111222222110            


Q ss_pred             -------------ccC---CHHHHHHHHhhCC-------CCC---------hhHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881          166 -------------KSG---QISIARQMFDKMP-------EKN---------AVSWSAMINGYVQVDLFKEALEHFNYMQL  213 (498)
Q Consensus       166 -------------~~~---~~~~A~~~~~~~~-------~~~---------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  213 (498)
                                   ..+   .+..|...+.+-.       ..+         ..+...-...+.-.|+.-.|..-|+....
T Consensus       275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~  354 (606)
T KOG0547|consen  275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK  354 (606)
T ss_pred             cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence                         001   1222222221110       011         11222222344556888899999999988


Q ss_pred             cCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHH
Q 010881          214 CGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYT  290 (498)
Q Consensus       214 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~  290 (498)
                      ....++. .|.-+...|....+.++....|....+.+ +-++.+|..-.+.+.-.+++++|..-|++...   .++..|-
T Consensus       355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~i  432 (606)
T KOG0547|consen  355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYI  432 (606)
T ss_pred             cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHH
Confidence            6544443 27777788899999999999999999887 77888998888888999999999999998876   3556677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----
Q 010881          291 SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-----  364 (498)
Q Consensus       291 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----  364 (498)
                      -+..+..+.+++++++..|++..++  .|           ..+++|+.....+...+++++|.+.|+.. .+.|.     
T Consensus       433 Ql~~a~Yr~~k~~~~m~~Fee~kkk--FP-----------~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~  499 (606)
T KOG0547|consen  433 QLCCALYRQHKIAESMKTFEEAKKK--FP-----------NCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLII  499 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh--CC-----------CCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccccccc
Confidence            7777778899999999999999885  33           36899999999999999999999999987 44443     


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          365 ----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       365 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                          +.+.-.++- +.-.+++..|..+++++++++|....+|..|+....+.|+.++|+++|++-..
T Consensus       500 v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  500 VNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             ccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence                222222222 22348999999999999999999999999999999999999999999988754

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.65  E-value=1.2e-12  Score=128.10  Aligned_cols=405  Identities=12%  Similarity=0.072  Sum_probs=203.3

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCC--CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFL--PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL  129 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  129 (498)
                      |++..+.|...|...|+++.++.+...+......  .-...|-.+.++|-..|++++|...|.+..+....-....+-.|
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl  348 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL  348 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence            3344444444444444444444444444332100  01122333444444444444444444444433222112223334


Q ss_pred             HHHHHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccC----CHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCC
Q 010881          130 LHLYATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSG----QISIARQMFDKMPEK---NAVSWSAMINGYVQVD  199 (498)
Q Consensus       130 ~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g  199 (498)
                      ...|.+.|+++.+...|+....   .+..+...|...|+..+    ..+.|..++.+..++   |+..|-.+...+.. +
T Consensus       349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~  427 (1018)
T KOG2002|consen  349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-T  427 (1018)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-c
Confidence            4444444444444444444321   12233333333333332    233344444433332   23333333333322 2


Q ss_pred             CHhHHHHHHHHH----HHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCChh------HHHHHHHHHH
Q 010881          200 LFKEALEHFNYM----QLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN---GIELDII------LGTAIIDMYA  266 (498)
Q Consensus       200 ~~~~a~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~------~~~~l~~~~~  266 (498)
                      ++..++.+|...    ...+-.+.....|.+.......|+++.|...|......   ...++..      +--.+..++-
T Consensus       428 d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E  507 (1018)
T KOG2002|consen  428 DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLE  507 (1018)
T ss_pred             ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHH
Confidence            222224444332    22333344555555555555555555555555554433   1112211      1222333444


Q ss_pred             hcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881          267 KCGCIETACSVFDSMPNRDVF---AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL  343 (498)
Q Consensus       267 ~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~  343 (498)
                      ..++.+.|...|..+.+..+.   .|-.++..-...+...+|..+++..+...             ..++..++.+...+
T Consensus       508 ~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-------------~~np~arsl~G~~~  574 (1018)
T KOG2002|consen  508 ELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-------------SSNPNARSLLGNLH  574 (1018)
T ss_pred             hhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-------------cCCcHHHHHHHHHH
Confidence            445555555555555542221   22222211122355556666666665431             33566777778888


Q ss_pred             hhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881          344 GRAGMLEAAKKVVREM----PIEPDNYVLGALLNACRV------------HGDVDLGKETVESLVERSLDHEGVHVLLSN  407 (498)
Q Consensus       344 ~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  407 (498)
                      .+...+..|..-|...    ...+|..+.-.|...|..            .+..++|+++|.++++.+|.+..+-+.++.
T Consensus       575 l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgi  654 (1018)
T KOG2002|consen  575 LKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGI  654 (1018)
T ss_pred             HhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhh
Confidence            8888888888755444    334777777777775543            246789999999999999999888889999


Q ss_pred             HhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCc
Q 010881          408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN  482 (498)
Q Consensus       408 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~  482 (498)
                      +++..|++.+|..+|.+.++.... .++ .|+-+.+..          -+..+.-..+..-...|++.+.+-+.+
T Consensus       655 VLA~kg~~~~A~dIFsqVrEa~~~-~~d-v~lNlah~~----------~e~~qy~~AIqmYe~~lkkf~~~~~~~  717 (1018)
T KOG2002|consen  655 VLAEKGRFSEARDIFSQVREATSD-FED-VWLNLAHCY----------VEQGQYRLAIQMYENCLKKFYKKNRSE  717 (1018)
T ss_pred             hhhhccCchHHHHHHHHHHHHHhh-CCc-eeeeHHHHH----------HHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence            999999999999999999886542 122 365554211          112222333333456677777544444

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.64  E-value=6.1e-13  Score=129.13  Aligned_cols=331  Identities=14%  Similarity=0.076  Sum_probs=246.2

Q ss_pred             HHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhh---ccCCCChhhHHHHHHHHHccCCHHH
Q 010881           96 RACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD---MSVNRDVISWTSLINGYAKSGQISI  172 (498)
Q Consensus        96 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~  172 (498)
                      ......|++++|..++.++++..+. +...|..|..+|-..|+.+++...+-   .+.+.|..-|..+.....+.|+++.
T Consensus       147 N~lfarg~~eeA~~i~~EvIkqdp~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  147 NNLFARGDLEEAEEILMEVIKQDPR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence            3344459999999999999988743 67788889999999999999887763   3445577889999999999999999


Q ss_pred             HHHHHhhCCCCC---hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHhccCChHHHHHHHHH
Q 010881          173 ARQMFDKMPEKN---AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA----GIVGALTACAFLGALDQGRWIHAY  245 (498)
Q Consensus       173 A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~  245 (498)
                      |.-.|.+..+.+   ...+.--+..|-+.|+...|...|.++.+...+.|..    +...+++.+...++-+.|.+.+..
T Consensus       226 A~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~  305 (895)
T KOG2076|consen  226 ARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEG  305 (895)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999887543   3333344567888999999999999998864322222    233445566667777888888877


Q ss_pred             HHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----C---------------------------ChhHHHHHH
Q 010881          246 VDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMPN----R---------------------------DVFAYTSLI  293 (498)
Q Consensus       246 ~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---------------------------~~~~~~~li  293 (498)
                      .... +-..+...++.++..|.+...++.|.........    +                           +... -.+.
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~  384 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLM  384 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHh
Confidence            6652 2245667788888888888888888876655432    1                           1112 1222


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHH
Q 010881          294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGA  370 (498)
Q Consensus       294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~  370 (498)
                      -++.+....+....+........+.|.+          +...|.-+.++|...|++.+|+.+|..+   +..-+...|..
T Consensus       385 icL~~L~~~e~~e~ll~~l~~~n~~~~d----------~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~  454 (895)
T KOG2076|consen  385 ICLVHLKERELLEALLHFLVEDNVWVSD----------DVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYK  454 (895)
T ss_pred             hhhhcccccchHHHHHHHHHHhcCChhh----------hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHH
Confidence            3444444445555555555555544432          6788999999999999999999999998   22335779999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeE
Q 010881          371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL  438 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  438 (498)
                      +..+|...|.+++|.+.|++++...|++..+-..|+..+.+.|+.++|.+.+..+..-+....+++.|
T Consensus       455 ~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~  522 (895)
T KOG2076|consen  455 LARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAW  522 (895)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccc
Confidence            99999999999999999999999999999999999999999999999999998886434333344433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.63  E-value=1.4e-15  Score=138.75  Aligned_cols=223  Identities=13%  Similarity=0.110  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA  266 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  266 (498)
                      .|..+...+...++++.|...|+++...+.. +...+..++.. ...+++++|..++....+.  .++...+...+..+.
T Consensus        46 ~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~  121 (280)
T PF13429_consen   46 YWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYY  121 (280)
T ss_dssp             ----------------------------------------------------------------------------H-HH
T ss_pred             ccccccccccccccccccccccccccccccc-ccccccccccc-ccccccccccccccccccc--ccccchhhHHHHHHH
Confidence            3334444445556666666666666554321 33334444444 4556666666665544333  244555666777777


Q ss_pred             hcCCHHHHHHHHhhCC-----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH
Q 010881          267 KCGCIETACSVFDSMP-----NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD  341 (498)
Q Consensus       267 ~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~  341 (498)
                      ..++++++.++++.+.     ..+...|..+...+.+.|+.++|+..+++.++.  .|+           |......++.
T Consensus       122 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--~P~-----------~~~~~~~l~~  188 (280)
T PF13429_consen  122 RLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL--DPD-----------DPDARNALAW  188 (280)
T ss_dssp             HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---TT------------HHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------CHHHHHHHHH
Confidence            7788877777777643     246667888888888999999999999999885  444           5788889999


Q ss_pred             HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881          342 LLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE  419 (498)
Q Consensus       342 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  419 (498)
                      .+...|+.+++.++++..  ....|+..+..+..+|...|+.++|+.+++++.+..|+++.....++.++...|+.++|.
T Consensus       189 ~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~  268 (280)
T PF13429_consen  189 LLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL  268 (280)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------
T ss_pred             HHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999988888777  223466678889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 010881          420 KVRRGME  426 (498)
Q Consensus       420 ~~~~~m~  426 (498)
                      +++++..
T Consensus       269 ~~~~~~~  275 (280)
T PF13429_consen  269 RLRRQAL  275 (280)
T ss_dssp             -------
T ss_pred             ccccccc
Confidence            9987664

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.63  E-value=6.6e-13  Score=118.31  Aligned_cols=348  Identities=14%  Similarity=0.104  Sum_probs=249.1

Q ss_pred             CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC----CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchH
Q 010881           16 TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ----YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTF   91 (498)
Q Consensus        16 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~   91 (498)
                      .+-+..++..+|...++-  ...+.|++++.+-.    +-+..+||.+|.+-.-.    .-.++..+|.+..+.||..||
T Consensus       203 ~PKT~et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~Tf  276 (625)
T KOG4422|consen  203 LPKTDETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTF  276 (625)
T ss_pred             cCCCchhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhH
Confidence            456778999999999999  89999999998865    34778899998765433    227899999999999999999


Q ss_pred             HHHHHHHHccCCcHH----HHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhh-HHHHhhccC--------C----CCh
Q 010881           92 SFILRACADTSCLFV----GLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP-ARKLFDMSV--------N----RDV  154 (498)
Q Consensus        92 ~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~--------~----~~~  154 (498)
                      |+++.+..+.|+++.    |.+++.+|.+.|+.|+..+|..++..+.+.++..+ +..++..+.        +    .|.
T Consensus       277 NalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~  356 (625)
T KOG4422|consen  277 NALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDN  356 (625)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchh
Confidence            999999999998765    45788899999999999999999999998888754 333333221        1    255


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881          155 ISWTSLINGYAKSGQISIARQMFDKMPE--------K---NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI  223 (498)
Q Consensus       155 ~~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  223 (498)
                      ..|...+..|.+..+.+.|.++-.-+..        +   ...-|..+....|+....+.-...|+.|+-+-+-|+..+.
T Consensus       357 ~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m  436 (625)
T KOG4422|consen  357 KFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTM  436 (625)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhH
Confidence            6678888888899999998888655442        1   2334667778888899999999999999988888999999


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhcC
Q 010881          224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF---AYTSLISGLANHD  300 (498)
Q Consensus       224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~  300 (498)
                      ..++.+....+.++-..++|..++..|..-+......++..+++..-            .|+..   -+.....-|+.  
T Consensus       437 ~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~------------hp~tp~r~Ql~~~~ak~aa--  502 (625)
T KOG4422|consen  437 IHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKL------------HPLTPEREQLQVAFAKCAA--  502 (625)
T ss_pred             HHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCC------------CCCChHHHHHHHHHHHHHH--
Confidence            99999999999999999999999988855444444444444443320            11111   11111111110  


Q ss_pred             ChHHH-HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHH
Q 010881          301 QSASA-IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEPDNYVLGALL  372 (498)
Q Consensus       301 ~~~~a-~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~  372 (498)
                      ++.++ ...-.+|....              .+....+...-.+.+.|..++|.+++.-+       +..|......-++
T Consensus       503 d~~e~~e~~~~R~r~~~--------------~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~  568 (625)
T KOG4422|consen  503 DIKEAYESQPIRQRAQD--------------WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELM  568 (625)
T ss_pred             HHHHHHHhhHHHHHhcc--------------CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHH
Confidence            11111 11222333322              23456777777788888888888877655       4445544455666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          373 NACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       373 ~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      ..-...++...|..+++-+.+.+.+
T Consensus       569 d~a~~~~spsqA~~~lQ~a~~~n~~  593 (625)
T KOG4422|consen  569 DSAKVSNSPSQAIEVLQLASAFNLP  593 (625)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCch
Confidence            6777778888888888888776643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.62  E-value=8.8e-13  Score=125.85  Aligned_cols=245  Identities=12%  Similarity=-0.003  Sum_probs=148.5

Q ss_pred             HccCCHHHHHHHHhhCCCC--ChhHHH--HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 010881          165 AKSGQISIARQMFDKMPEK--NAVSWS--AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR  240 (498)
Q Consensus       165 ~~~~~~~~A~~~~~~~~~~--~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  240 (498)
                      .+.|+++.|.+.|.++.+.  +.....  .....+...|++++|...++++.+.. +-+......+...+...|++++|.
T Consensus       129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence            4556666666666555432  221111  22345556666666666666665543 223344555556666666666666


Q ss_pred             HHHHHHHHhCCCCCh-------hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHH
Q 010881          241 WIHAYVDRNGIELDI-------ILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFM  310 (498)
Q Consensus       241 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~  310 (498)
                      .++..+.+.+..++.       .+|..++.......+.+...++++.+++   .++.....+..++...|+.++|..+++
T Consensus       208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~  287 (398)
T PRK10747        208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL  287 (398)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            666666655433211       1233334434444555666666666653   366677777777888888888888887


Q ss_pred             HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881          311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETV  388 (498)
Q Consensus       311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~  388 (498)
                      +..+.  .|            +...  .++.+....++.+++.+..++. ...| |+..+..+...|...+++++|.+.|
T Consensus       288 ~~l~~--~~------------~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~l  351 (398)
T PRK10747        288 DGLKR--QY------------DERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAF  351 (398)
T ss_pred             HHHhc--CC------------CHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            77663  11            2211  1233334557778888777776 4445 4556667777788888888888888


Q ss_pred             HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      +.+++..|++. .+..++.++.+.|+.++|.+++++-..
T Consensus       352 e~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        352 RAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            88888877764 466788888888888888888776543

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=1.9e-12  Score=116.62  Aligned_cols=244  Identities=13%  Similarity=0.073  Sum_probs=176.7

Q ss_pred             HccCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881          165 AKSGQISIARQMFDKMPEK------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ  238 (498)
Q Consensus       165 ~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  238 (498)
                      -...|+++|+.+|+++.+.      |..+|..++  |++..+-.  +.++.+-.-.--+--..|..++.+-|+-.++.+.
T Consensus       273 y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEK  348 (559)
T KOG1155|consen  273 YNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEK  348 (559)
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHH
Confidence            3445566666666665532      445555544  33332211  2222221111112233577777777778888888


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881          239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLE  315 (498)
Q Consensus       239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  315 (498)
                      |..+|++..+.+ +....+|+.+.+-|....+...|...++.+.+   .|-..|-.|.++|.-.+...=|+-.|++... 
T Consensus       349 Av~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~-  426 (559)
T KOG1155|consen  349 AVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE-  426 (559)
T ss_pred             HHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh-
Confidence            888888888776 66677888888889999999999999988775   4677888899999999999999999999877 


Q ss_pred             CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       316 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                       ++|+           |...|.+|.++|.+.++.++|+..|.+.  .-..+...+..|...|.+.++.++|...|++.++
T Consensus       427 -~kPn-----------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  427 -LKPN-----------DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             -cCCC-----------chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             4666           7899999999999999999999999988  3244678888999999999999999999988887


Q ss_pred             c-------CCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          394 R-------SLDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       394 ~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      .       +|....+...|+.-+.+.+++++|..+.....
T Consensus       495 ~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~  534 (559)
T KOG1155|consen  495 VSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVL  534 (559)
T ss_pred             HHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHh
Confidence            2       23333344568888889999999988765443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.61  E-value=1.2e-13  Score=129.80  Aligned_cols=274  Identities=12%  Similarity=-0.014  Sum_probs=209.2

Q ss_pred             ChhhHHHHhhccCCC--C-hhhHHHHHHHHHccCCHHHHHHHHhhCCC------CChhHHHHHHHHHHhCCCHhHHHHHH
Q 010881          138 CMDPARKLFDMSVNR--D-VISWTSLINGYAKSGQISIARQMFDKMPE------KNAVSWSAMINGYVQVDLFKEALEHF  208 (498)
Q Consensus       138 ~~~~a~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~a~~~~  208 (498)
                      +..+|...|......  | ..+..-+..+|...+++++|+++|+.+.+      .+...|.+.+-.+-+.    -++.++
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence            345677777664322  2 23445567778888888888888887764      2566677666543221    222222


Q ss_pred             HH-HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh
Q 010881          209 NY-MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF  287 (498)
Q Consensus       209 ~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  287 (498)
                      .+ +... -+-...+|..+.++|+-.++.+.|++.|++..+.+ +-...+|+.+..-+.....+|.|...|+.....|+.
T Consensus       410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r  487 (638)
T KOG1126|consen  410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR  487 (638)
T ss_pred             HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence            22 2222 24456788888888888899999999998888765 447788888888888899999999999998886665


Q ss_pred             HHH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          288 AYT---SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       288 ~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      .|+   -|...|.++++++.|+-.|++..+  +.|.           +.+....+...+.+.|+.++|+++++++ .+.|
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~-----------nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~  554 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPS-----------NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP  554 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCcc-----------chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC
Confidence            554   467789999999999999999876  3444           6788888899999999999999999998 4455


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                       |+..--..+..+...+++++|+..++++.+.-|++..+|..++.+|.+.|+.+.|+.-|--+.+.+.
T Consensus       555 kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  555 KNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             CCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence             5555555667778889999999999999999999999999999999999999999998877765443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.60  E-value=7.5e-13  Score=118.76  Aligned_cols=363  Identities=13%  Similarity=0.061  Sum_probs=232.8

Q ss_pred             CChhHHHHHhhhcC--CCC------cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHH
Q 010881           36 GDLSHGYRLFVCLQ--YRT------TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG  107 (498)
Q Consensus        36 g~~~~A~~~~~~~~--~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a  107 (498)
                      ..+..|.+.+.-..  -|+      +...+.+.-.+.+.|+++.|+..|+...+  ..|+..+-..|+-++...|+-++.
T Consensus       251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekm  328 (840)
T KOG2003|consen  251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKM  328 (840)
T ss_pred             hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHH
Confidence            55666666654322  111      22344444567778888888888888776  447766655556566667888888


Q ss_pred             HHHHHHHHHhCCCC------------chhHHHHHH-----HHHHhCCC--hhhHHHHhhcc----CCCChhh---H----
Q 010881          108 LICHAQVIRLGWES------------YDFVLNGLL-----HLYATCNC--MDPARKLFDMS----VNRDVIS---W----  157 (498)
Q Consensus       108 ~~~~~~~~~~~~~~------------~~~~~~~l~-----~~~~~~g~--~~~a~~~~~~~----~~~~~~~---~----  157 (498)
                      .+.|..|+.....+            +....+.-+     .-.-+.+.  .++++-.--++    +.|+-..   |    
T Consensus       329 keaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~  408 (840)
T KOG2003|consen  329 KEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLES  408 (840)
T ss_pred             HHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHH
Confidence            88888887643222            222222222     11111111  11111111112    2222110   1    


Q ss_pred             ------HH--------HHHHHHccCCHHHHHHHHhhCCCCChhH-----------------------------------H
Q 010881          158 ------TS--------LINGYAKSGQISIARQMFDKMPEKNAVS-----------------------------------W  188 (498)
Q Consensus       158 ------~~--------li~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------------------------~  188 (498)
                            ..        -...+.+.|+++.|+++++-..+.|..+                                   |
T Consensus       409 lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry  488 (840)
T KOG2003|consen  409 LKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY  488 (840)
T ss_pred             HHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc
Confidence                  00        1123678899999998887665432111                                   1


Q ss_pred             HHH-----HHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          189 SAM-----INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       189 ~~l-----i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      |.-     .+.....|++++|...|++.+...-.-....|++-+ .+-..|++++|...|-.+...- ..+..+.-.+.+
T Consensus       489 n~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il-~nn~evl~qian  566 (840)
T KOG2003|consen  489 NAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIAN  566 (840)
T ss_pred             CHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHH
Confidence            110     011123577788888888877654333333333322 3456678888887776654431 335666667777


Q ss_pred             HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881          264 MYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV  340 (498)
Q Consensus       264 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~  340 (498)
                      .|....+...|++++.+...   .|+.....|...|-+.|+-..|.+.+-.--+             -++.+..+..-|.
T Consensus       567 iye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyr-------------yfp~nie~iewl~  633 (840)
T KOG2003|consen  567 IYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-------------YFPCNIETIEWLA  633 (840)
T ss_pred             HHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-------------ccCcchHHHHHHH
Confidence            78888888888888776553   4777788888888888888888777655322             1233789999999


Q ss_pred             HHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881          341 DLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNAC-RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW  415 (498)
Q Consensus       341 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  415 (498)
                      ..|....-+++|+.+|++. -+.|+..-|..++..| .+.|++.+|.++|+.+.+.-|.+......|++++...|..
T Consensus       634 ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  634 AYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            9999999999999999998 6789999999988766 6689999999999999999999999999999998888763

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.59  E-value=1.1e-11  Score=120.54  Aligned_cols=341  Identities=13%  Similarity=0.132  Sum_probs=263.5

Q ss_pred             CChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHH
Q 010881           36 GDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICH  111 (498)
Q Consensus        36 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  111 (498)
                      |+.++|.+++.++.+   .+...|.+|...|-..|+.+++...+-.+-.  +.| |...|..+.....+.|+++.|.-.|
T Consensus       153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~e~W~~ladls~~~~~i~qA~~cy  230 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDYELWKRLADLSEQLGNINQARYCY  230 (895)
T ss_pred             CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence            999999999999874   4678999999999999999999887765544  444 6677888888899999999999999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCCh----h----hHHHHHHHHHccCCHHHHHHHHhhCCC-
Q 010881          112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV----I----SWTSLINGYAKSGQISIARQMFDKMPE-  182 (498)
Q Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~A~~~~~~~~~-  182 (498)
                      .++++..++ +....---...|-+.|+...|.+.|.++.+.++    .    .--.++..+...++-+.|.+.++.... 
T Consensus       231 ~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~  309 (895)
T KOG2076|consen  231 SRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK  309 (895)
T ss_pred             HHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            999998754 455555567889999999999999988765433    1    222345567777777889988887764 


Q ss_pred             ----CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHh
Q 010881          183 ----KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF---------------------------RPNHAGIVGALTACA  231 (498)
Q Consensus       183 ----~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~---------------------------~p~~~~~~~ll~~~~  231 (498)
                          -+...++.++..+.+...++.|......+.....                           .++... .-+.-++.
T Consensus       310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~  388 (895)
T KOG2076|consen  310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLV  388 (895)
T ss_pred             ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhh
Confidence                2556788999999999999999999988877211                           222222 12233445


Q ss_pred             ccCChHHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHH
Q 010881          232 FLGALDQGRWIHAYVDRNGI--ELDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASA  305 (498)
Q Consensus       232 ~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a  305 (498)
                      .....+....+...+.+..+  .-+...|.-+.++|...|++..|..+|..+..    .+...|-.+..+|...|.+++|
T Consensus       389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A  468 (895)
T KOG2076|consen  389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA  468 (895)
T ss_pred             cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence            55666666666666776663  34567889999999999999999999999886    3667899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----------CCCCCHHHHHHHHHH
Q 010881          306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-----------PIEPDNYVLGALLNA  374 (498)
Q Consensus       306 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------~~~p~~~~~~~l~~~  374 (498)
                      .+.|+..+..  .|+           +...-..|...+.+.|+.++|.+.+..+           ...|+..........
T Consensus       469 ~e~y~kvl~~--~p~-----------~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~  535 (895)
T KOG2076|consen  469 IEFYEKVLIL--APD-----------NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI  535 (895)
T ss_pred             HHHHHHHHhc--CCC-----------chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH
Confidence            9999999884  555           5677778899999999999999999986           234455555555667


Q ss_pred             HHhcCCHHHHHHHHHHHHh
Q 010881          375 CRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       375 ~~~~g~~~~A~~~~~~~~~  393 (498)
                      +...|+.++-......++.
T Consensus       536 l~~~gk~E~fi~t~~~Lv~  554 (895)
T KOG2076|consen  536 LFQVGKREEFINTASTLVD  554 (895)
T ss_pred             HHHhhhHHHHHHHHHHHHH
Confidence            7888888876666555554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.58  E-value=2e-11  Score=110.38  Aligned_cols=382  Identities=10%  Similarity=0.084  Sum_probs=278.9

Q ss_pred             CChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcch-HHHHHHHHHccCCcHHHHHHH
Q 010881           36 GDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT-FSFILRACADTSCLFVGLICH  111 (498)
Q Consensus        36 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~  111 (498)
                      ++++.|+.+|+...   ..+...|-..+..=.++..+..|..+++....  +-|-+.- |--.+..--..|++..|.++|
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt--~lPRVdqlWyKY~ymEE~LgNi~gaRqif  164 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVT--ILPRVDQLWYKYIYMEEMLGNIAGARQIF  164 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHH--hcchHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            78889999999865   46777888888888999999999999999887  4454332 333344445679999999999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhcc--CCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC------
Q 010881          112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS--VNRDVISWTSLINGYAKSGQISIARQMFDKMPEK------  183 (498)
Q Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------  183 (498)
                      +...+  +.|+...|++.++.-.+.+.++.|..+|++.  ..|++.+|.....--.++|+...|..+|+...+.      
T Consensus       165 erW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~  242 (677)
T KOG1915|consen  165 ERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE  242 (677)
T ss_pred             HHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence            99876  5799999999999999999999999999985  4789999999888889999999999999877642      


Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCCh---HHHHH-----HHHHHHHhCCCC
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN--HAGIVGALTACAFLGAL---DQGRW-----IHAYVDRNGIEL  253 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~---~~a~~-----~~~~~~~~~~~~  253 (498)
                      +...+.+....-.+...++.|.-+|+-.++. ++.+  ...|......--+-|+.   ++++-     -++.+.+.+ +.
T Consensus       243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~  320 (677)
T KOG1915|consen  243 AEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY  320 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence            3344555555556677888999999888875 2222  22333333332334443   33331     133344444 66


Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh---hHHHHHHH-----H---HHhcCChHHHHHHHHHHHHcCCCCC
Q 010881          254 DIILGTAIIDMYAKCGCIETACSVFDSMPN--RDV---FAYTSLIS-----G---LANHDQSASAIELFMRMQLEGVVPN  320 (498)
Q Consensus       254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~-----~---~~~~~~~~~a~~~~~~m~~~~~~p~  320 (498)
                      |-.+|--.++.-...|+.+...++|++...  |..   ..|...|-     +   -....+.+.+.++|+..++  +.|.
T Consensus       321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~--lIPH  398 (677)
T KOG1915|consen  321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD--LIPH  398 (677)
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hcCc
Confidence            778888888888889999999999998874  211   12222221     1   1346788899999998887  4454


Q ss_pred             chhhhhhCCCCChHHHHHH----HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          321 ESMSEIYGIEPGVQHYGCL----VDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~l----~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                                 ...||..+    .....++.++..|.+++... |.-|...++...|..-.+.++++....+|++.++-+
T Consensus       399 -----------kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~  467 (677)
T KOG1915|consen  399 -----------KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS  467 (677)
T ss_pred             -----------ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence                       34555444    33334677888888888877 888888888888888888888888888888888888


Q ss_pred             CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCce
Q 010881          396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGC  436 (498)
Q Consensus       396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  436 (498)
                      |.+..++...+..-...|+++.|..+|+-..+...-..|..
T Consensus       468 Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpel  508 (677)
T KOG1915|consen  468 PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPEL  508 (677)
T ss_pred             hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHH
Confidence            88888888888888888888888888887776544333433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.58  E-value=4.5e-12  Score=121.04  Aligned_cols=280  Identities=11%  Similarity=0.007  Sum_probs=216.5

Q ss_pred             ccCCcHHHHHHHHHHHHhCCCCchhH-HHHHHHHHHhCCChhhHHHHhhccCCC--ChhhHH--HHHHHHHccCCHHHHH
Q 010881          100 DTSCLFVGLICHAQVIRLGWESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNR--DVISWT--SLINGYAKSGQISIAR  174 (498)
Q Consensus       100 ~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~--~li~~~~~~~~~~~A~  174 (498)
                      ..|+++.|.+.+....+...  ++.. +........+.|+++.|.+.+.++.+.  +.....  .....+...|+++.|.
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            35999999987776555432  2333 333345558899999999999988754  332222  3356788999999999


Q ss_pred             HHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCChHHHHHHHH
Q 010881          175 QMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH-------AGIVGALTACAFLGALDQGRWIHA  244 (498)
Q Consensus       175 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~  244 (498)
                      ..++++.+  | +......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++
T Consensus       174 ~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        174 HGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99998874  3 6778889999999999999999999999988755433       133333444444556667777777


Q ss_pred             HHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhh
Q 010881          245 YVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS  324 (498)
Q Consensus       245 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  324 (498)
                      .+.+. .+.++.....+...+...|+.++|.+++++..+.....--.++.+....++.++++...+...+.  .|+    
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~----  326 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGD----  326 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCC----
Confidence            76544 25678889999999999999999999998877633332233444555679999999999999875  455    


Q ss_pred             hhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       325 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                             |...+..+...+.+.|++++|.+.|+.. ...|+...+..+...+.+.|+.++|.+++++.+.+-
T Consensus       327 -------~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        327 -------TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             -------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence                   6788999999999999999999999998 778999999999999999999999999999987743

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=5.4e-11  Score=107.64  Aligned_cols=402  Identities=9%  Similarity=0.036  Sum_probs=249.3

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC--CCc-chHHHHHHHHHhCCCchHHHHHHHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--RTT-FIWNTMIRGFAEKNEPIKAFALYKQ   78 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~A~~~~~~   78 (498)
                      +.|++++..++... ..+...|-..+.+=.++  ..+..|+.+++....  |-+ ..|-..+..=-..|++..|.++|+.
T Consensus        90 ~RARSv~ERALdvd-~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqifer  166 (677)
T KOG1915|consen   90 QRARSVFERALDVD-YRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFER  166 (677)
T ss_pred             HHHHHHHHHHHhcc-cccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            45677777777666 33666666666666666  666667666665431  211 1233333333334666666666666


Q ss_pred             hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC------
Q 010881           79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR------  152 (498)
Q Consensus        79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------  152 (498)
                      -.+  ..|+...|.+.++.-.+-..++.|..+++..+-.  .|++.+|--....-.++|....+..+|+..++.      
T Consensus       167 W~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~  242 (677)
T KOG1915|consen  167 WME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE  242 (677)
T ss_pred             HHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence            555  5566666666666666666666666666665542  355666655556566666666666666543321      


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHhhC--------------------------------------------CC--C-Ch
Q 010881          153 DVISWTSLINGYAKSGQISIARQMFDKM--------------------------------------------PE--K-NA  185 (498)
Q Consensus       153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~--------------------------------------------~~--~-~~  185 (498)
                      +...+.+...--.++..++.|.-+|+-.                                            ..  | |-
T Consensus       243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nY  322 (677)
T KOG1915|consen  243 AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNY  322 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCc
Confidence            1112222222222223333333332211                                            11  1 44


Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH--HHH----HHHHH-H---hccCChHHHHHHHHHHHHhCCCCCh
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA--GIV----GALTA-C---AFLGALDQGRWIHAYVDRNGIELDI  255 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~----~ll~~-~---~~~~~~~~a~~~~~~~~~~~~~~~~  255 (498)
                      .+|-..++.-...|+.+...++|++...+ ++|-..  .+.    .-|+. |   ....+.+.+.++++...+. ++...
T Consensus       323 DsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkk  400 (677)
T KOG1915|consen  323 DSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKK  400 (677)
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCccc
Confidence            56666677777788999999999988775 444221  111    11221 1   3457888888888888773 45555


Q ss_pred             hHHHHHHHH----HHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC
Q 010881          256 ILGTAIIDM----YAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI  329 (498)
Q Consensus       256 ~~~~~l~~~----~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~  329 (498)
                      .||.-+=-.    -.+..++..|.+++.....  |-..+|-..|..-.+.++++.+..+|++.++.+  |.         
T Consensus       401 FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~--Pe---------  469 (677)
T KOG1915|consen  401 FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS--PE---------  469 (677)
T ss_pred             chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--hH---------
Confidence            665544333    3467788899998887764  666778888888888899999999999988852  33         


Q ss_pred             CCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP----DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                        +..+|......-...|+.+.|..+|.-.--+|    -...|...|.--...|.++.|..+|+++++..+... ++...
T Consensus       470 --~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k-vWisF  546 (677)
T KOG1915|consen  470 --NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK-VWISF  546 (677)
T ss_pred             --hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch-HHHhH
Confidence              67888888888888999999999998772133    344566667767788999999999999998877655 66666


Q ss_pred             HHHhH-----hcC-----------CcchHHHHHHhhh
Q 010881          406 SNIYA-----STE-----------QWNGVEKVRRGME  426 (498)
Q Consensus       406 ~~~~~-----~~g-----------~~~~a~~~~~~m~  426 (498)
                      +..-.     ..+           ....|..+|++..
T Consensus       547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn  583 (677)
T KOG1915|consen  547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERAN  583 (677)
T ss_pred             HHHhccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence            55433     233           3456777777664

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.55  E-value=3.9e-14  Score=129.14  Aligned_cols=216  Identities=15%  Similarity=0.080  Sum_probs=86.6

Q ss_pred             HHHHHHhCCChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhH
Q 010881          129 LLHLYATCNCMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKE  203 (498)
Q Consensus       129 l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~  203 (498)
                      +.......++.+.|.+.++++...   ++..+..++.. ...+++++|.+++...-+  ++...+..++..+.+.+++++
T Consensus        50 ~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  128 (280)
T PF13429_consen   50 LADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDE  128 (280)
T ss_dssp             ---------------------------------------------------------------------H-HHHTT-HHH
T ss_pred             cccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHH
Confidence            333333444444444444444322   12223333333 344555555555544322  244455566666677777777


Q ss_pred             HHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881          204 ALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP  282 (498)
Q Consensus       204 a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  282 (498)
                      +..+++.+.... .+++...|..+...+.+.|+.++|...++...+.. |.|..+.+.++..+...|+.+++..+++...
T Consensus       129 ~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~  207 (280)
T PF13429_consen  129 AEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLL  207 (280)
T ss_dssp             HHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            777777765432 23445555666666667777777777777777664 4456667777777777777777666555443


Q ss_pred             ---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          283 ---NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       283 ---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                         ..|...+..+..+|...|+.++|+.+|++....  .|+           |......+.+++...|+.++|.++..+.
T Consensus       208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~-----------d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD-----------DPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT------------HHHHHHHHHHHT---------------
T ss_pred             HHCcCHHHHHHHHHHHhccccccccccccccccccc--ccc-----------cccccccccccccccccccccccccccc
Confidence               245666777777777777777777777777663  232           5677777777777777777777776654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.55  E-value=3.2e-10  Score=106.71  Aligned_cols=362  Identities=13%  Similarity=0.055  Sum_probs=241.4

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 010881           54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL  132 (498)
Q Consensus        54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  132 (498)
                      .+|+.-...|.+.+.++-|..+|...++  +.| +...|......--..|..+....++++++..-++ ....+-....-
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alq--vfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk-ae~lwlM~ake  593 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQ--VFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK-AEILWLMYAKE  593 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHh--hccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc-chhHHHHHHHH
Confidence            3455555566666666667777766665  333 3444555555555566777777777777766432 34445555556


Q ss_pred             HHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHH
Q 010881          133 YATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEH  207 (498)
Q Consensus       133 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~  207 (498)
                      +...|+...|..++++..+   .+...|-+-+.......+++.|..+|.+...  ++...|..-+...--.++.++|+++
T Consensus       594 ~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl  673 (913)
T KOG0495|consen  594 KWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL  673 (913)
T ss_pred             HHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence            6666777777777766542   2445666666777777777777777776653  4555555555555566777777777


Q ss_pred             HHHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 010881          208 FNYMQLCGFRPNHA-GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---  283 (498)
Q Consensus       208 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---  283 (498)
                      +++.++.  -|+-. .|..+.+.+-+.++.+.|...|..=.+. ++..+..|-.|.+.=-+.|.+-.|..+|++..-   
T Consensus       674 lEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNP  750 (913)
T KOG0495|consen  674 LEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNP  750 (913)
T ss_pred             HHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCC
Confidence            7776664  34433 4555556666667777777666544433 355566777777777777777777777776553   


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 010881          284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEP  363 (498)
Q Consensus       284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p  363 (498)
                      .|...|-..|+.-.+.|..+.|..+..+.++.  .|+           +...|..-|....+.++-..+...+++..  -
T Consensus       751 k~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~-----------sg~LWaEaI~le~~~~rkTks~DALkkce--~  815 (913)
T KOG0495|consen  751 KNALLWLESIRMELRAGNKEQAELLMAKALQE--CPS-----------SGLLWAEAIWLEPRPQRKTKSIDALKKCE--H  815 (913)
T ss_pred             CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc-----------cchhHHHHHHhccCcccchHHHHHHHhcc--C
Confidence            25567777777777777777777777776663  222           46667777777777777666666666653  3


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeE
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL  438 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  438 (498)
                      |+.....+...+-...+++.|.+.|.+++..+|+...+|..+...+.+.|.-++-.+++++.....  |.-|..|
T Consensus       816 dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W  888 (913)
T KOG0495|consen  816 DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELW  888 (913)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHH
Confidence            455566667777788899999999999999999999999999999999999888888988776533  3344444

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.53  E-value=6.2e-10  Score=104.79  Aligned_cols=389  Identities=7%  Similarity=-0.078  Sum_probs=295.2

Q ss_pred             CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHH
Q 010881           17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR   96 (498)
Q Consensus        17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~   96 (498)
                      +.++..|.+.++.      .+.+.|+.++.+..+--+.+. -|.-++++..-++.|..++++.++ .++.+...|.+-..
T Consensus       377 P~sv~LWKaAVel------E~~~darilL~rAveccp~s~-dLwlAlarLetYenAkkvLNkaRe-~iptd~~IWitaa~  448 (913)
T KOG0495|consen  377 PRSVRLWKAAVEL------EEPEDARILLERAVECCPQSM-DLWLALARLETYENAKKVLNKARE-IIPTDREIWITAAK  448 (913)
T ss_pred             CchHHHHHHHHhc------cChHHHHHHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHH
Confidence            3445555554443      555667777776553211111 123355666778889999999887 36567777877777


Q ss_pred             HHHccCCcHHHHHHHHHHH----HhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC----C-C-ChhhHHHHHHHHHc
Q 010881           97 ACADTSCLFVGLICHAQVI----RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV----N-R-DVISWTSLINGYAK  166 (498)
Q Consensus        97 ~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~-~-~~~~~~~li~~~~~  166 (498)
                      .--..|+.+...++.++-+    ..|+..+..-|-.=...|-..|..-.+..+....+    + . --.+|+.-...|.+
T Consensus       449 LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k  528 (913)
T KOG0495|consen  449 LEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEK  528 (913)
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHh
Confidence            7777888888888776543    45777777777776777777777766666655432    1 1 23578888888999


Q ss_pred             cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 010881          167 SGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIH  243 (498)
Q Consensus       167 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  243 (498)
                      .+.++-|..+|....+   .+...|......--..|..++...+|++.+.. ++-....+.......-..|+...|..++
T Consensus       529 ~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il  607 (913)
T KOG0495|consen  529 RPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVIL  607 (913)
T ss_pred             cchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHH
Confidence            9999999999887764   25566777766666779999999999999886 2333344555556667789999999999


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 010881          244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE  321 (498)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  321 (498)
                      ..+.+.. +.+..+|-+-+.....+.+++.|..+|.+...  ++...|..-+...--.++.++|.+++++.++.  .|+ 
T Consensus       608 ~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~-  683 (913)
T KOG0495|consen  608 DQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPD-  683 (913)
T ss_pred             HHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCc-
Confidence            9998886 66888999999999999999999999998775  66777777777777789999999999998874  343 


Q ss_pred             hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       322 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                                -...|..+.+.+-+.++++.|...|..- ..-| ....|..|...--+.|++.+|..++++..-.+|.+.
T Consensus       684 ----------f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~  753 (913)
T KOG0495|consen  684 ----------FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA  753 (913)
T ss_pred             ----------hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence                      3677888899999999999999998876 4455 566777777777888999999999999999999999


Q ss_pred             hHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          400 GVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ..|...+.+-.+.|..+.|..+..+..+.
T Consensus       754 ~lwle~Ir~ElR~gn~~~a~~lmakALQe  782 (913)
T KOG0495|consen  754 LLWLESIRMELRAGNKEQAELLMAKALQE  782 (913)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999999888777654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.53  E-value=3.5e-11  Score=108.26  Aligned_cols=151  Identities=13%  Similarity=0.123  Sum_probs=106.5

Q ss_pred             HHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH
Q 010881          265 YAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD  341 (498)
Q Consensus       265 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~  341 (498)
                      +-..|++++|++.|-++..   .++...-.+...|-...+...|++++-+...  +.|+           |+...+.|.+
T Consensus       534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~-----------dp~ilskl~d  600 (840)
T KOG2003|consen  534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPN-----------DPAILSKLAD  600 (840)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCC-----------CHHHHHHHHH
Confidence            3344555555555544332   3333444444445555555555555544432  3333           6888999999


Q ss_pred             HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881          342 LLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE  419 (498)
Q Consensus       342 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  419 (498)
                      .|-+.|+-..|.+.+-+- ..-| +..+..-|...|....-+++|+.+|+++--..|+.......++.++.+.|++..|.
T Consensus       601 lydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~  680 (840)
T KOG2003|consen  601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAF  680 (840)
T ss_pred             HhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHH
Confidence            999999999998886554 4444 77788778888888888999999999999899988766667777888899999999


Q ss_pred             HHHHhhhhC
Q 010881          420 KVRRGMEDN  428 (498)
Q Consensus       420 ~~~~~m~~~  428 (498)
                      .+++....+
T Consensus       681 d~yk~~hrk  689 (840)
T KOG2003|consen  681 DLYKDIHRK  689 (840)
T ss_pred             HHHHHHHHh
Confidence            999888643

>TIGR00540 hemY_coli hemY protein

Probab=99.52  E-value=2.5e-11  Score=116.54  Aligned_cols=252  Identities=13%  Similarity=0.063  Sum_probs=140.9

Q ss_pred             HHHHccCCHHHHHHHHhhCCC--CCh--hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChH
Q 010881          162 NGYAKSGQISIARQMFDKMPE--KNA--VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALD  237 (498)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  237 (498)
                      .+..+.|+.+.|.+.+.+..+  |+.  ...-.....+...|+++.|...++.+.+.. +-+...+..+...+...|+++
T Consensus       126 ~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       126 EAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHH
Confidence            344444555555555555321  221  122223455556666666666666666543 123334555566666666666


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHH---H----hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 010881          238 QGRWIHAYVDRNGIELDIILGTAIIDMY---A----KCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIE  307 (498)
Q Consensus       238 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~  307 (498)
                      +|...+..+.+.+..+.......-..++   .    .....+...+.++..++   .++..+..+...+...|+.++|..
T Consensus       205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~  284 (409)
T TIGR00540       205 ALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQE  284 (409)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHH
Confidence            6666666666655322221111111111   1    12223344444555443   366777777777888888888888


Q ss_pred             HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH--HHHHHHHHHHHhcCCHHH
Q 010881          308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN--YVLGALLNACRVHGDVDL  383 (498)
Q Consensus       308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~--~~~~~l~~~~~~~g~~~~  383 (498)
                      ++++..+.  .||+         ++..............++.+.+.+.+++. ...| |+  ....++...|.+.|++++
T Consensus       285 ~l~~~l~~--~pd~---------~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~  353 (409)
T TIGR00540       285 IIFDGLKK--LGDD---------RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIE  353 (409)
T ss_pred             HHHHHHhh--CCCc---------ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHH
Confidence            88887774  2331         00000111222223346777777777766 3344 33  556677778888888888


Q ss_pred             HHHHHH--HHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          384 GKETVE--SLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       384 A~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      |.+.|+  ...+..|++.. +..++..+.+.|+.++|.+++++..
T Consensus       354 A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l  397 (409)
T TIGR00540       354 AADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSL  397 (409)
T ss_pred             HHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            888888  45556676553 5588888888888888888887654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.51  E-value=3.5e-11  Score=108.64  Aligned_cols=296  Identities=15%  Similarity=0.085  Sum_probs=196.3

Q ss_pred             CCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHh
Q 010881          119 WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKN-AVSWSAMINGYVQ  197 (498)
Q Consensus       119 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~  197 (498)
                      ...|...+-...-.+.+.|..+.|+..|...+..-+..|.+-+....-..+.+.+..+.......+ ...---+..++-.
T Consensus       160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e  239 (559)
T KOG1155|consen  160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQE  239 (559)
T ss_pred             ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence            344555555555556677888888888876665444444443333333333333332222222110 0000111222333


Q ss_pred             CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC---------------------------
Q 010881          198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG---------------------------  250 (498)
Q Consensus       198 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------  250 (498)
                      ....+++..-.+.....|++-+...-+....+.....++++|+.+|+++.+..                           
T Consensus       240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA  319 (559)
T KOG1155|consen  240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA  319 (559)
T ss_pred             HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence            33344444444444444333222222222222233344444444444444331                           


Q ss_pred             ------CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 010881          251 ------IELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE  321 (498)
Q Consensus       251 ------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  321 (498)
                            -+--+.|...+.+-|.-.++.++|...|++..+-   ....|+.+.+-|....+...|.+-+++.++-  .|. 
T Consensus       320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~-  396 (559)
T KOG1155|consen  320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPR-  396 (559)
T ss_pred             HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--Cch-
Confidence                  0223345555566677778889999999988763   4568999999999999999999999999873  333 


Q ss_pred             hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       322 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                                |-..|-.|.++|.-.+...=|+-+|++. ..+| |...|.+|..+|.+.++.++|+..|.+++..+-.+.
T Consensus       397 ----------DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~  466 (559)
T KOG1155|consen  397 ----------DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEG  466 (559)
T ss_pred             ----------hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccch
Confidence                      7899999999999999999999999999 7778 899999999999999999999999999999988888


Q ss_pred             hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          400 GVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ..+..|+..|.+.++.++|...+++-.+
T Consensus       467 ~~l~~LakLye~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  467 SALVRLAKLYEELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            8999999999999999999999988765

>TIGR00540 hemY_coli hemY protein

Probab=99.51  E-value=4.8e-11  Score=114.61  Aligned_cols=281  Identities=13%  Similarity=-0.005  Sum_probs=206.6

Q ss_pred             HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC--CCh--hhHHHHHHHHHccCCHHHHH
Q 010881           99 ADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN--RDV--ISWTSLINGYAKSGQISIAR  174 (498)
Q Consensus        99 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~A~  174 (498)
                      ...|+++.|.+.+....+..+.| ...+-....++...|+++.|.+.+.+..+  |+.  .........+...|+++.|.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~-~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEP-VLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            45799999999998887765332 23334556778889999999999988643  333  23344577888999999999


Q ss_pred             HHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH---hccCChHHHHHHHHHHHH
Q 010881          175 QMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC---AFLGALDQGRWIHAYVDR  248 (498)
Q Consensus       175 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~  248 (498)
                      ..++.+.+  | +...+..+...+...|++++|.+.+..+.+.++.++......-..++   ...+..+.+...+..+.+
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~  253 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK  253 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999874  3 66788899999999999999999999999987543332212112222   222222323334444433


Q ss_pred             hC---CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhH---HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881          249 NG---IELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFA---YTSLISGLANHDQSASAIELFMRMQLEGVVPN  320 (498)
Q Consensus       249 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  320 (498)
                      ..   .+.+...+..+...+...|+.+.|.+++++..+  ||...   ...........++.+.+...+++..+.  .|+
T Consensus       254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~  331 (409)
T TIGR00540       254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDD  331 (409)
T ss_pred             HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCC
Confidence            32   124788899999999999999999999998876  43331   122222334457888899999888774  455


Q ss_pred             chhhhhhCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          321 ESMSEIYGIEPGV--QHYGCLVDLLGRAGMLEAAKKVVRE--M-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       321 ~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                                 |.  ....++...+.+.|++++|.+.|+.  . ...|+...+..+...+.+.|+.++|.+++++.+.
T Consensus       332 -----------~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       332 -----------KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             -----------ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                       45  6677899999999999999999994  3 6789999999999999999999999999999765

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.50  E-value=3.1e-11  Score=117.02  Aligned_cols=408  Identities=13%  Similarity=0.052  Sum_probs=265.7

Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCC----CcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881            6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYR----TTFIWNTMIRGFAEKNEPIKAFALYKQMLR   81 (498)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~   81 (498)
                      .++..+...|+.|+-.+|..+|.-|+..  |+++.|- +|.-|.-+    +...|+.++.+..+.++.+.+.        
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~--gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk--------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTK--GDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK--------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHccc--CCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC--------
Confidence            4778899999999999999999999999  9999999 88887633    5678999999999999988876        


Q ss_pred             CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHH-------hCCCC-chhH-------------HHHHHHHHHhCCChh
Q 010881           82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIR-------LGWES-YDFV-------------LNGLLHLYATCNCMD  140 (498)
Q Consensus        82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-------~~~~~-~~~~-------------~~~l~~~~~~~g~~~  140 (498)
                         .|...||..|+.+|...||+..-..+-+.+..       .|+.. ....             -...+......|-++
T Consensus        80 ---ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwa  156 (1088)
T KOG4318|consen   80 ---EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWA  156 (1088)
T ss_pred             ---CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHH
Confidence               58899999999999999997663332222221       12211 1000             112233334445666


Q ss_pred             hHHHHhhccCCC--ChhhHHHHHHHHHcc-CCHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 010881          141 PARKLFDMSVNR--DVISWTSLINGYAKS-GQISIARQMFDKMPE-KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF  216 (498)
Q Consensus       141 ~a~~~~~~~~~~--~~~~~~~li~~~~~~-~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  216 (498)
                      .+.+++..++..  +. ....+++-+... ..+++-..+.....+ +++.+|..++.+-..+|+.+.|..++.+|.+.|+
T Consensus       157 qllkll~~~Pvsa~~~-p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf  235 (1088)
T KOG4318|consen  157 QLLKLLAKVPVSAWNA-PFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF  235 (1088)
T ss_pred             HHHHHHhhCCcccccc-hHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence            666666555421  11 111123333322 334444444444444 7999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH-----------HHhhCC---
Q 010881          217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS-----------VFDSMP---  282 (498)
Q Consensus       217 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-----------~~~~~~---  282 (498)
                      +.+..-|..++-+   .++...+..+++-|...|+.|+..|+.-.+-.+.++|....+..           ++..+.   
T Consensus       236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~  312 (1088)
T KOG4318|consen  236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGL  312 (1088)
T ss_pred             Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhccc
Confidence            9999988888866   78888889999999999999999998876666655443211110           111110   


Q ss_pred             -------------------C-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCC---------------
Q 010881          283 -------------------N-------RDVFAYTSLISGLANHDQSASAIELFMRMQLE--GVVP---------------  319 (498)
Q Consensus       283 -------------------~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p---------------  319 (498)
                                         +       ....+|...+. ...+|+-++..++-..|..-  ...|               
T Consensus       313 ~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFr  391 (1088)
T KOG4318|consen  313 LANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFR  391 (1088)
T ss_pred             HhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHH
Confidence                               0       01122222222 12234444444433333211  0111               


Q ss_pred             --------------------------------------Cc----------------------------------------
Q 010881          320 --------------------------------------NE----------------------------------------  321 (498)
Q Consensus       320 --------------------------------------~~----------------------------------------  321 (498)
                                                            |.                                        
T Consensus       392 r~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~s  471 (1088)
T KOG4318|consen  392 RIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNS  471 (1088)
T ss_pred             HHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHH
Confidence                                                  11                                        


Q ss_pred             --hhhh------hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881          322 --SMSE------IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-----PIEPDNYVLGALLNACRVHGDVDLGKETV  388 (498)
Q Consensus       322 --~~~~------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  388 (498)
                        .+.+      .+.-..-...|..||+.+...+..+.|..+.++.     ....+..-+..+.+.+.+.+....+..++
T Consensus       472 e~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL  551 (1088)
T KOG4318|consen  472 EYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTIL  551 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHH
Confidence              0000      0000011245677888888888888888888877     23345556777888888888899999998


Q ss_pred             HHHHhcC---CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccc
Q 010881          389 ESLVERS---LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRK  432 (498)
Q Consensus       389 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  432 (498)
                      .++.+.-   |.....+..+.+.....|+.+...++.+-....|+..
T Consensus       552 ~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  552 YEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             hhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence            8887732   3233445667777788888888888888888777765

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=3.9e-12  Score=119.87  Aligned_cols=277  Identities=14%  Similarity=0.079  Sum_probs=200.9

Q ss_pred             CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC------CChhhHHHHHHHHHccCCHHH-HHH
Q 010881          103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN------RDVISWTSLINGYAKSGQISI-ARQ  175 (498)
Q Consensus       103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~-A~~  175 (498)
                      +..+|...|+.+-..- .-...+...+..+|...+++++|+++|+.+.+      .+.+.|.+.+-.+.+.-.+.- |..
T Consensus       334 ~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            3456666666633332 22335566666777777777777777766542      256677776665544333222 233


Q ss_pred             HHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC
Q 010881          176 MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD  254 (498)
Q Consensus       176 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  254 (498)
                      +.+.. ...+.+|..+.++|.-+++.+.|++.|++..+  +.| ...+|+.+..-+.....+|.|...|+....    .|
T Consensus       413 Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~----~~  485 (638)
T KOG1126|consen  413 LIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG----VD  485 (638)
T ss_pred             HHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc----CC
Confidence            33332 34678888888888888999999999888877  355 667888888888888888999888887764    44


Q ss_pred             hhHHH---HHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC
Q 010881          255 IILGT---AIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG  328 (498)
Q Consensus       255 ~~~~~---~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~  328 (498)
                      +..|+   -+.-.|.+.++++.|+-.|+++.+   .+.+....+...+.+.|+.++|++++++....  .|.        
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~k--------  555 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPK--------  555 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCC--------
Confidence            55554   466788899999999999998886   35567777778888899999999999998764  333        


Q ss_pred             CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881          329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG  400 (498)
Q Consensus       329 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  400 (498)
                         |+-.-...+..+...++.++|+..++++ .+.| +...|..+...|.+.|+.+.|+.-|.-+.+++|.-..
T Consensus       556 ---n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  556 ---NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             ---CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence               4555556677788889999999999998 5566 5667777888999999999999999999999987543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=9.1e-11  Score=101.25  Aligned_cols=298  Identities=12%  Similarity=0.088  Sum_probs=168.6

Q ss_pred             cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhh-------HHHHHHHHHccCCHHHH
Q 010881          101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVIS-------WTSLINGYAKSGQISIA  173 (498)
Q Consensus       101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~A  173 (498)
                      ..+.++|...|-+|.+..+ .+..+.-+|.+.|.+.|..|.|+++.+.+......|       ...|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            4577888888888877542 345566677788888888888888887765432222       23344556677777777


Q ss_pred             HHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 010881          174 RQMFDKMPEK---NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG  250 (498)
Q Consensus       174 ~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  250 (498)
                      +.+|..+.+.   -......|+..|-...+|++|+++-+++.+.+..+...-    |                       
T Consensus       127 E~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~e----I-----------------------  179 (389)
T COG2956         127 EDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVE----I-----------------------  179 (389)
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhH----H-----------------------
Confidence            7777777653   234555677777777777777777777766554433211    0                       


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh
Q 010881          251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY  327 (498)
Q Consensus       251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~  327 (498)
                          ...|..|...+....+.+.|...+.+..+.   .+..--.+.+.+...|++..|.+.++...+.+.          
T Consensus       180 ----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~----------  245 (389)
T COG2956         180 ----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP----------  245 (389)
T ss_pred             ----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh----------
Confidence                122333333334444555555555554432   122222334455556666666666666555421          


Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                        .--..+...|..+|...|+.++....+.++ ...+....-..+...-....-.+.|...+.+-+...|.--..+..+-
T Consensus       246 --~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~  323 (389)
T COG2956         246 --EYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMD  323 (389)
T ss_pred             --HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHH
Confidence              112344555666666666666666666555 33344444444444444444556666666666666665443333222


Q ss_pred             HHhH--hcCCcchHHHHHHhhhhCCccccCceeEEEEC
Q 010881          407 NIYA--STEQWNGVEKVRRGMEDNEVRKVPGCSLIEVD  442 (498)
Q Consensus       407 ~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~  442 (498)
                      .-+.  ..|++.+-.-+++.|....++..|.+..-..+
T Consensus       324 ~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~~CG  361 (389)
T COG2956         324 YHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQNCG  361 (389)
T ss_pred             hhhccccccchhhhHHHHHHHHHHHHhhcCCceecccC
Confidence            2222  23557777777888877766666655443333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.8e-10  Score=99.44  Aligned_cols=287  Identities=13%  Similarity=0.112  Sum_probs=179.6

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC---chhHHHHHHH
Q 010881           55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWES---YDFVLNGLLH  131 (498)
Q Consensus        55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~  131 (498)
                      .|-.=++.+. ++++++|+++|-+|.+.+ +-+..+-.+|-+.|.+.|..++|.++++.+.++.--+   -......|..
T Consensus        38 ~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~  115 (389)
T COG2956          38 DYVKGLNFLL-SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR  115 (389)
T ss_pred             HHHhHHHHHh-hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence            3433344333 578999999999999832 1234445667788999999999999999998752111   1233456777


Q ss_pred             HHHhCCChhhHHHHhhccCCCC---hhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHH--------HHHHHHhCCC
Q 010881          132 LYATCNCMDPARKLFDMSVNRD---VISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA--------MINGYVQVDL  200 (498)
Q Consensus       132 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--------li~~~~~~g~  200 (498)
                      -|...|-+|.|+++|..+.+..   ..+...|+..|....++++|+++-+++.+.+...|+.        +...+....+
T Consensus       116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~  195 (389)
T COG2956         116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD  195 (389)
T ss_pred             HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence            8999999999999999988643   4567789999999999999999988776544444443        3334444556


Q ss_pred             HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhh
Q 010881          201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDS  280 (498)
Q Consensus       201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  280 (498)
                      .+.|...+++..+.+  |                                  ..+..--.+.+.+...|+++.|.+.++.
T Consensus       196 ~d~A~~~l~kAlqa~--~----------------------------------~cvRAsi~lG~v~~~~g~y~~AV~~~e~  239 (389)
T COG2956         196 VDRARELLKKALQAD--K----------------------------------KCVRASIILGRVELAKGDYQKAVEALER  239 (389)
T ss_pred             HHHHHHHHHHHHhhC--c----------------------------------cceehhhhhhHHHHhccchHHHHHHHHH
Confidence            666666666665542  2                                  2333333444555555555555555555


Q ss_pred             CCCCCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 010881          281 MPNRDV----FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV  356 (498)
Q Consensus       281 ~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  356 (498)
                      +.+.|+    .+...|..+|.+.|+.++....+.++.+...              ....-..+.+.-....-.+.|..++
T Consensus       240 v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--------------g~~~~l~l~~lie~~~G~~~Aq~~l  305 (389)
T COG2956         240 VLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--------------GADAELMLADLIELQEGIDAAQAYL  305 (389)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--------------CccHHHHHHHHHHHhhChHHHHHHH
Confidence            554333    2345555666667777777777766666421              2233333334333444445555554


Q ss_pred             Hh-CCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 010881          357 RE-MPIEPDNYVLGALLNACRVH---GDVDLGKETVESLVE  393 (498)
Q Consensus       357 ~~-~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~  393 (498)
                      .+ +.-+|+...+..|+......   |...+....++.|+.
T Consensus       306 ~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         306 TRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             HHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            43 35578888777777765332   334445555555554

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.42  E-value=9.3e-11  Score=104.01  Aligned_cols=162  Identities=14%  Similarity=0.087  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881          255 IILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP  331 (498)
Q Consensus       255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~  331 (498)
                      ...+..+...|...|++++|.+.+++..+   .+...+..+...+...|++++|...+++.......|.           
T Consensus        65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------  133 (234)
T TIGR02521        65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQ-----------  133 (234)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc-----------
Confidence            34444455555555555555555554432   2334555556666667777777777777665321111           


Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      ....+..+..++...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++..+
T Consensus       134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  213 (234)
T TIGR02521       134 PARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIA  213 (234)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3456667778888888888888888877 3344 4667777888888888899998888888888777777777788888


Q ss_pred             HhcCCcchHHHHHHhhhh
Q 010881          410 ASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~  427 (498)
                      ...|+.++|..+.+.+.+
T Consensus       214 ~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       214 RALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHhhHHHHHHHHHHHHh
Confidence            888888888888777654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.41  E-value=1.1e-09  Score=97.63  Aligned_cols=291  Identities=11%  Similarity=-0.007  Sum_probs=226.9

Q ss_pred             HHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 010881           24 GKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD  100 (498)
Q Consensus        24 ~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  100 (498)
                      .++..+..+..-|++..|++...+-.+   .....|-.-.++--+.|+.+.+-..+.+..+.--.++...+-+..+....
T Consensus        86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~  165 (400)
T COG3071          86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN  165 (400)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh
Confidence            344455554444999999999987553   33455666667777889999999999999884223445556666677889


Q ss_pred             cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC-----------ChhhHHHHHHHHHccCC
Q 010881          101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-----------DVISWTSLINGYAKSGQ  169 (498)
Q Consensus       101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~  169 (498)
                      .|+++.|..-..++.+.++. +..+......+|.+.|++.....++..+.+.           ...+|+.++.-....+.
T Consensus       166 ~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~  244 (400)
T COG3071         166 RRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG  244 (400)
T ss_pred             CCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999999999998855 6778888999999999999999999887653           22467778877777777


Q ss_pred             HHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010881          170 ISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV  246 (498)
Q Consensus       170 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  246 (498)
                      .+.-...++..+.   .++..-.+++.-+.+.|+.++|.++.++..+.+..|+.    ..+-.+.+-++...-.+..+.-
T Consensus       245 ~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~  320 (400)
T COG3071         245 SEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKW  320 (400)
T ss_pred             chHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHH
Confidence            7776677777763   35667777888899999999999999999998877772    2223455667777766666655


Q ss_pred             HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881          247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN  320 (498)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  320 (498)
                      .+.. +.++..+.+|...|.+.+.+.+|...|+...+  ++..+|+.+..++.+.|+..+|.+++++.+..-..|+
T Consensus       321 l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         321 LKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             HHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            4432 45568899999999999999999999998764  7899999999999999999999999999876544443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.39  E-value=1.8e-11  Score=105.51  Aligned_cols=226  Identities=11%  Similarity=0.044  Sum_probs=196.1

Q ss_pred             HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881          188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK  267 (498)
Q Consensus       188 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  267 (498)
                      -+.+.++|.+.|.+.+|...++.-+..  .|-..||..+-..|.+..++..|..++.+-.+.- +-++....-..+.+..
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence            357889999999999999999998876  5677789999999999999999999999888763 5555555677888999


Q ss_pred             cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHh
Q 010881          268 CGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG  344 (498)
Q Consensus       268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~  344 (498)
                      .++.++|.++|+...+   .++....++...|.-.++++-|+.+|++++..|+.             +++.|+.+.-+|.
T Consensus       303 m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-------------speLf~NigLCC~  369 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-------------SPELFCNIGLCCL  369 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-------------ChHHHhhHHHHHH
Confidence            9999999999998775   36667777778899999999999999999998853             4689999999999


Q ss_pred             hcCCHHHHHHHHHhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881          345 RAGMLEAAKKVVREM---PIEP--DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE  419 (498)
Q Consensus       345 ~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  419 (498)
                      -.+++|-++.-|++.   --.|  -..+|-.+.......||+..|.+.|+.++..++++...++.|+..-.+.|++++|.
T Consensus       370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar  449 (478)
T KOG1129|consen  370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR  449 (478)
T ss_pred             hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH
Confidence            999999999999887   2234  35678888888889999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhCC
Q 010881          420 KVRRGMEDNE  429 (498)
Q Consensus       420 ~~~~~m~~~~  429 (498)
                      .+++......
T Consensus       450 sll~~A~s~~  459 (478)
T KOG1129|consen  450 SLLNAAKSVM  459 (478)
T ss_pred             HHHHHhhhhC
Confidence            9999887643

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.38  E-value=2.8e-09  Score=95.03  Aligned_cols=276  Identities=10%  Similarity=0.030  Sum_probs=164.9

Q ss_pred             cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC----ChhhHHHHHHHHHccCCHHHHHHH
Q 010881          101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR----DVISWTSLINGYAKSGQISIARQM  176 (498)
Q Consensus       101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~  176 (498)
                      .|++.+|++...+..+.+..| ...|..-..+.-..|+.+.+-+++.+..++    +...+-+..+.....|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            467777777766665555332 233444445555667777777776665433    223445555566667777777666


Q ss_pred             HhhCC---CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhccCChHHHHHHHHHH
Q 010881          177 FDKMP---EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH-------AGIVGALTACAFLGALDQGRWIHAYV  246 (498)
Q Consensus       177 ~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~  246 (498)
                      .+++.   ..++........+|.+.|++.+...++.+|.+.|.-.+.       .++..++.-+...+..+.-...|+..
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            65544   447788888899999999999999999999988865553       34555555555555555545555555


Q ss_pred             HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhh
Q 010881          247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS  324 (498)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  324 (498)
                      .+.- ..++.+-.+++.-+.++|+.++|.++.++..++  |..  -...-.+.+.++...-++..++-...  .|+    
T Consensus       256 pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l~~~d~~~l~k~~e~~l~~--h~~----  326 (400)
T COG3071         256 PRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRLRPGDPEPLIKAAEKWLKQ--HPE----  326 (400)
T ss_pred             cHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhcCCCCchHHHHHHHHHHHh--CCC----
Confidence            4432 445555566666666677777766666555432  222  11112334445555555544444432  122    


Q ss_pred             hhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          325 EIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       325 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                             ++..+..|...|.+.+.+.+|...|+.. ...|+..+|+.+..++.+.|+..+|.++.++.+.
T Consensus       327 -------~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         327 -------DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             -------ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence                   3355666666666666666666666655 5566666666666666666666666666666553

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=1.3e-09  Score=101.09  Aligned_cols=249  Identities=10%  Similarity=-0.031  Sum_probs=155.5

Q ss_pred             HHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 010881          164 YAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR  240 (498)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  240 (498)
                      +-..+++.+..++++.+.+.   ....+..-|.++...|+..+-..+=.+|++. .+-...+|-++.--|...|+..+|+
T Consensus       254 ~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seAR  332 (611)
T KOG1173|consen  254 LYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEAR  332 (611)
T ss_pred             HHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHH
Confidence            33445555555555554432   2233334444555555555555555555543 2233345555555555555555555


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010881          241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGV  317 (498)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  317 (498)
                      +.|....... +.-...|-.+...|+-.|.-+.|...+..+.+   .....+--+.--|.+.+...-|.+.|.+...  +
T Consensus       333 ry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i  409 (611)
T KOG1173|consen  333 RYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--I  409 (611)
T ss_pred             HHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--c
Confidence            5555544432 22334555555555555555555555443322   1111111122235555666666666655543  3


Q ss_pred             CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881          318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-----PI---EP-DNYVLGALLNACRVHGDVDLGKETV  388 (498)
Q Consensus       318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~  388 (498)
                      .|+           |+...+-+.-.....+.+.+|..+|+..     .+   .+ -..+++.|..+|.+.+.+++|+..+
T Consensus       410 ~P~-----------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  410 APS-----------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             CCC-----------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            444           6788888888888899999999999876     11   11 3457888999999999999999999


Q ss_pred             HHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          389 ESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       389 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ++++.+.|.+..++..++.+|...|+++.|+..|.+...
T Consensus       479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=3.2e-09  Score=98.59  Aligned_cols=261  Identities=13%  Similarity=0.039  Sum_probs=130.2

Q ss_pred             HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccCCHH
Q 010881           95 LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSGQIS  171 (498)
Q Consensus        95 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~  171 (498)
                      ..-|...+++....++.+.+.+.. ++....+..-|.++...|+..+-..+=.+++.   ..+.+|-++..-|.-.|..+
T Consensus       251 ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~s  329 (611)
T KOG1173|consen  251 ADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYS  329 (611)
T ss_pred             HHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcH
Confidence            333445566666666666666554 23334444444455555555554444444442   24456666666666666666


Q ss_pred             HHHHHHhhCCCCC---hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881          172 IARQMFDKMPEKN---AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR  248 (498)
Q Consensus       172 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  248 (498)
                      +|.+.|.+...-|   ...|-.+...|+-.|.-++|+..|...-+- ++-....+.-+.--|.+.++.+.|.++|.+...
T Consensus       330 eARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a  408 (611)
T KOG1173|consen  330 EARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA  408 (611)
T ss_pred             HHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            6666666554322   345666666666666666666666555432 111222223333344555666666666665554


Q ss_pred             hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 010881          249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR----------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVV  318 (498)
Q Consensus       249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  318 (498)
                      .. |.|+.+.+-+.-.....+.+.+|...|+....+          -..+++.|..+|.+.+++++|+..+++.+..  .
T Consensus       409 i~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--~  485 (611)
T KOG1173|consen  409 IA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--S  485 (611)
T ss_pred             cC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--C
Confidence            43 445555555555555555666666655543310          1123444444444444555555444444442  1


Q ss_pred             CCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 010881          319 PNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGAL  371 (498)
Q Consensus       319 p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l  371 (498)
                      |.           +..++.++.-.|...|+++.|.+.|.+. .+.|+..+-..+
T Consensus       486 ~k-----------~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~l  528 (611)
T KOG1173|consen  486 PK-----------DASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISEL  528 (611)
T ss_pred             CC-----------chhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHH
Confidence            11           3444444444444444444444444444 444444333333

>PF13041 PPR_2: PPR repeat family

Probab=99.32  E-value=3e-12  Score=82.15  Aligned_cols=50  Identities=22%  Similarity=0.537  Sum_probs=44.5

Q ss_pred             CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 010881           51 RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD  100 (498)
Q Consensus        51 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  100 (498)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68889999999999999999999999999999999999999999988864

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.31  E-value=1.5e-09  Score=96.22  Aligned_cols=196  Identities=13%  Similarity=0.006  Sum_probs=143.5

Q ss_pred             hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010881          185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM  264 (498)
Q Consensus       185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  264 (498)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            4456666777777777777777777776642 2234556666677777788888888877777664 4455667777778


Q ss_pred             HHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881          265 YAKCGCIETACSVFDSMPN-----RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL  339 (498)
Q Consensus       265 ~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l  339 (498)
                      +...|++++|...|++...     .....+..+...+...|++++|...+.+....  .|+           +...+..+
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l  175 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQ-----------RPESLLEL  175 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC-----------ChHHHHHH
Confidence            8888888888888887654     13346666777888889999999999888764  232           45678888


Q ss_pred             HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                      ...+...|++++|...+++. ...| +...+..+...+...|+.+.|..+.+.+....
T Consensus       176 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  233 (234)
T TIGR02521       176 AELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLF  233 (234)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            88899999999999988887 3233 56667777788888899999998888776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13041 PPR_2: PPR repeat family

Probab=99.31  E-value=7.5e-12  Score=80.28  Aligned_cols=50  Identities=24%  Similarity=0.438  Sum_probs=44.0

Q ss_pred             CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010881          183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF  232 (498)
Q Consensus       183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  232 (498)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67888999999999999999999999999999999999999998888864

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.30  E-value=7.5e-10  Score=105.55  Aligned_cols=234  Identities=13%  Similarity=0.068  Sum_probs=175.6

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHc-----C-CCCCHHHHH-HHHHHHhccCChHHHHHHHHHHHHhCC----CCC
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLC-----G-FRPNHAGIV-GALTACAFLGALDQGRWIHAYVDRNGI----ELD  254 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~  254 (498)
                      .+...+...|...|++++|..+++..++.     | ..|...+.. .+...|...+++++|..+|+.+...-.    +-+
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34555888999999999999999988764     2 234444333 366778889999999999998865311    222


Q ss_pred             ---hhHHHHHHHHHHhcCCHHHHHHHHhhCCC----------CCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C
Q 010881          255 ---IILGTAIIDMYAKCGCIETACSVFDSMPN----------RDV-FAYTSLISGLANHDQSASAIELFMRMQLEG---V  317 (498)
Q Consensus       255 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~  317 (498)
                         ..+++.|..+|.+.|++++|...++...+          +.+ ..++.++..+...+++++|..++.+..+.-   .
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence               34566777789999999988887776542          222 246667778999999999999998876531   1


Q ss_pred             CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 010881          318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---------PIEP-DNYVLGALLNACRVHGDVDLGKET  387 (498)
Q Consensus       318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~  387 (498)
                      .+++        .....+++.|...|...|++++|.++++++         +..+ ....++.|...|.+.+++.+|.++
T Consensus       360 g~~~--------~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l  431 (508)
T KOG1840|consen  360 GEDN--------VNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQL  431 (508)
T ss_pred             cccc--------hHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHH
Confidence            1110        113678999999999999999999999987         2223 356788899999999999999999


Q ss_pred             HHHHHh----cCCCCc---hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          388 VESLVE----RSLDHE---GVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       388 ~~~~~~----~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      |.+...    .+|+++   .+|..|+..|...|++++|.++.+....
T Consensus       432 ~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  432 FEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            988764    556554   4577999999999999999999888763

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.29  E-value=3.3e-09  Score=101.27  Aligned_cols=245  Identities=16%  Similarity=0.087  Sum_probs=148.7

Q ss_pred             hHHHHHHHHHccCCcHHHHHHHHHHHHh-----CC-CCchhH-HHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHH
Q 010881           90 TFSFILRACADTSCLFVGLICHAQVIRL-----GW-ESYDFV-LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN  162 (498)
Q Consensus        90 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~  162 (498)
                      +...+...|...|+++.|..++++.++.     |. .|...+ .+.+...|...+++++|..+|+               
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~---------------  265 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYE---------------  265 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHH---------------
Confidence            4444556666666666666666666553     10 111111 2223344444444444444442               


Q ss_pred             HHHccCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881          163 GYAKSGQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ  238 (498)
Q Consensus       163 ~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  238 (498)
                               +|..+++...-+    -..+++.|..+|.+.|++++|...++...+.                        
T Consensus       266 ---------~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I------------------------  312 (508)
T KOG1840|consen  266 ---------EALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI------------------------  312 (508)
T ss_pred             ---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH------------------------
Confidence                     233333333322    3456778888899999999998888876542                        


Q ss_pred             HHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCC-------CC-C---hhHHHHHHHHHHhcCChHHHH
Q 010881          239 GRWIHAYVDRNGIELDI-ILGTAIIDMYAKCGCIETACSVFDSMP-------NR-D---VFAYTSLISGLANHDQSASAI  306 (498)
Q Consensus       239 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~-~---~~~~~~li~~~~~~~~~~~a~  306 (498)
                          ++..... ..|.+ ..++.+...++..+++++|..+++...       .+ +   ..+++.|...|...|++++|.
T Consensus       313 ----~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~  387 (508)
T KOG1840|consen  313 ----YEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE  387 (508)
T ss_pred             ----HHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence                1110000 01111 122344445555566665555554432       11 2   347888888999999999999


Q ss_pred             HHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHH
Q 010881          307 ELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM--------PIEP-DNYVLGALLNACR  376 (498)
Q Consensus       307 ~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p-~~~~~~~l~~~~~  376 (498)
                      +++++.....-...      .+..+ ....++.|...|.+.++..+|.++|.+.        +-.| ...+|..|...|.
T Consensus       388 ~~~k~ai~~~~~~~------~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~  461 (508)
T KOG1840|consen  388 ELYKKAIQILRELL------GKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYR  461 (508)
T ss_pred             HHHHHHHHHHHhcc------cCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHH
Confidence            99988876421111      01122 3567888999999999999999988876        2334 3568999999999


Q ss_pred             hcCCHHHHHHHHHHHHh
Q 010881          377 VHGDVDLGKETVESLVE  393 (498)
Q Consensus       377 ~~g~~~~A~~~~~~~~~  393 (498)
                      ..|+++.|.++.+.+..
T Consensus       462 ~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  462 AQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HcccHHHHHHHHHHHHH
Confidence            99999999999998874

>PRK12370 invasion protein regulator; Provisional

Probab=99.28  E-value=1.2e-09  Score=109.03  Aligned_cols=257  Identities=12%  Similarity=0.061  Sum_probs=170.6

Q ss_pred             ChhhHHHHHHHHHc-----cCCHHHHHHHHhhCCCC---ChhHHHHHHHHHH---------hCCCHhHHHHHHHHHHHcC
Q 010881          153 DVISWTSLINGYAK-----SGQISIARQMFDKMPEK---NAVSWSAMINGYV---------QVDLFKEALEHFNYMQLCG  215 (498)
Q Consensus       153 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~---------~~g~~~~a~~~~~~m~~~g  215 (498)
                      +...|...+.+-..     .++.++|...|++..+.   +...|..+..++.         ..+++++|...+++..+..
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld  334 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD  334 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence            44555555555321     23467888888887643   3445555554443         2344788888888888753


Q ss_pred             CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-hhHHHHH
Q 010881          216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD-VFAYTSL  292 (498)
Q Consensus       216 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l  292 (498)
                       +-+...+..+...+...|++++|...++++.+.+ +.+...+..+..+|...|++++|...++++.+  |+ ...+..+
T Consensus       335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~  412 (553)
T PRK12370        335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK  412 (553)
T ss_pred             -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence             2245566666677778889999999998888876 55677788888888889999999999888765  32 2233344


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 010881          293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGA  370 (498)
Q Consensus       293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~  370 (498)
                      +..+...|++++|...++++.... .|+           +...+..+..++...|+.++|...+.++ ...|+ ....+.
T Consensus       413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~-----------~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~  480 (553)
T PRK12370        413 LWITYYHTGIDDAIRLGDELRSQH-LQD-----------NPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNL  480 (553)
T ss_pred             HHHHHhccCHHHHHHHHHHHHHhc-ccc-----------CHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHH
Confidence            445666788889999888877642 222           3556777888888899999999988887 44554 333444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcC---CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          371 LLNACRVHGDVDLGKETVESLVERS---LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      +...|...|  +.|...++.+.+..   +.++.   .+...+.-.|+-+.+... +++.+.+
T Consensus       481 l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        481 LYAEYCQNS--ERALPTIREFLESEQRIDNNPG---LLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHHhccH--HHHHHHHHHHHHHhhHhhcCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            555566666  47777777766533   33332   255566667776666555 7776654

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.28  E-value=5.9e-08  Score=86.94  Aligned_cols=299  Identities=12%  Similarity=-0.045  Sum_probs=194.4

Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHH---HHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010881          151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSA---MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL  227 (498)
Q Consensus       151 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  227 (498)
                      +.|+.....+...+...|+.++|+..|++...-|+.+...   ..-.+.+.|+++....+...+.... +-+...|-.-+
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~  307 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA  307 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence            3466777778888888888888888888766444333222   2334456778877777777765431 12223333333


Q ss_pred             HHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHH
Q 010881          228 TACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSAS  304 (498)
Q Consensus       228 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~  304 (498)
                      .......+++.|..+-+..++.. +.+...+-.-..++...++.++|.-.|+....   -+..+|.-|+.+|...|+..+
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence            33445667777777777766654 44555555555667778888888888876543   367788888888888888888


Q ss_pred             HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH-HHHh-hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC
Q 010881          305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV-DLLG-RAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGD  380 (498)
Q Consensus       305 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~  380 (498)
                      |..+-+...+.             +..+..+...+. ..+. ....-++|..++++. .++|+ ....+.+...|...|.
T Consensus       387 A~~~An~~~~~-------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~  453 (564)
T KOG1174|consen  387 ANALANWTIRL-------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP  453 (564)
T ss_pred             HHHHHHHHHHH-------------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence            88776665542             112345554442 2222 223347788888876 66774 5566667777888888


Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHH
Q 010881          381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEE  460 (498)
Q Consensus       381 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (498)
                      .++++.++++.+...|+.. ....|+..+...+.+.+|...|.....                          ..|+.+.
T Consensus       454 ~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am~~y~~ALr--------------------------~dP~~~~  506 (564)
T KOG1174|consen  454 TKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAMEYYYKALR--------------------------QDPKSKR  506 (564)
T ss_pred             cchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHHHHHHHHHh--------------------------cCccchH
Confidence            8888888888888777754 788888888888888888888866653                          2445556


Q ss_pred             HHHHHHHHHHHHHhcC--cccCCccccccCCcc
Q 010881          461 IVLLLFGIDKHLKSLC--FFDDGNEVATEGGSL  491 (498)
Q Consensus       461 ~~~~l~~~~~~~~~~g--~~~~~~~~~~~~~~~  491 (498)
                      ...-+..+.+.+.+..  -+.|.+-|=+.+|.+
T Consensus       507 sl~Gl~~lEK~~~~~DATdE~D~~~V~D~~G~~  539 (564)
T KOG1174|consen  507 TLRGLRLLEKSDDESDATDESDQQSVNDLTGLC  539 (564)
T ss_pred             HHHHHHHHHhccCCCCccccccccchhhccCcc
Confidence            6666665566555332  333444466666654

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.26  E-value=4.8e-09  Score=102.27  Aligned_cols=245  Identities=14%  Similarity=0.080  Sum_probs=134.0

Q ss_pred             HHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCCh
Q 010881           75 LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDV  154 (498)
Q Consensus        75 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  154 (498)
                      ++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.....++.++......++.+.+.       .|..
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a   83 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA   83 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence            4444555566666666666666666666666665 6665555555555556666666666655555443       4555


Q ss_pred             hhHHHHHHHHHccCCHHH---HHH--------------------HHhhCC-CC-ChhHHHHHHHHHHhCCCHhHHHHHHH
Q 010881          155 ISWTSLINGYAKSGQISI---ARQ--------------------MFDKMP-EK-NAVSWSAMINGYVQVDLFKEALEHFN  209 (498)
Q Consensus       155 ~~~~~li~~~~~~~~~~~---A~~--------------------~~~~~~-~~-~~~~~~~li~~~~~~g~~~~a~~~~~  209 (498)
                      .+|+.|..+|...||+..   +.+                    ++..+. .| ....-...+....-.|.++.+++++.
T Consensus        84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~  163 (1088)
T KOG4318|consen   84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLA  163 (1088)
T ss_pred             hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666666666443   121                    111111 00 01111123333444555666665555


Q ss_pred             HHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----
Q 010881          210 YMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR----  284 (498)
Q Consensus       210 ~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  284 (498)
                      .+.-.. ..|.    ..+++-+..  ......++........-.|++.++.+++++-..+|+.+.|..++..|.+.    
T Consensus       164 ~~Pvsa~~~p~----~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi  237 (1088)
T KOG4318|consen  164 KVPVSAWNAPF----QVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI  237 (1088)
T ss_pred             hCCcccccchH----HHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence            442110 1111    112333322  22233334433333222588888888888888888888888888888764    


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM  348 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  348 (498)
                      +..-|-.|+-+   .+...-+..+++.|.+.|+.|+            ..|+...+..+...|.
T Consensus       238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~------------seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPG------------SETQADYVIPQLSNGQ  286 (1088)
T ss_pred             ccccchhhhhc---CccchHHHHHHHHHHHhcCCCC------------cchhHHHHHhhhcchh
Confidence            22223333333   6777777888888888766555            6777777766666555

>PRK12370 invasion protein regulator; Provisional

Probab=99.24  E-value=1.6e-09  Score=108.14  Aligned_cols=227  Identities=9%  Similarity=-0.055  Sum_probs=172.3

Q ss_pred             ChhHHHHHHHHHHh-----CCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 010881          184 NAVSWSAMINGYVQ-----VDLFKEALEHFNYMQLCGFRPNHA-GIVGALTACA---------FLGALDQGRWIHAYVDR  248 (498)
Q Consensus       184 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~---------~~~~~~~a~~~~~~~~~  248 (498)
                      +...|...+.+-..     .+.+++|...|++..+.  .|+.. .+..+..++.         ..+++++|...++++.+
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            45555566555322     23467999999999875  56544 4444433332         23457899999999998


Q ss_pred             hCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881          249 NGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE  325 (498)
Q Consensus       249 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  325 (498)
                      .. +.+...+..+..++...|++++|...|+++.+  | +...+..+...+...|++++|...+++..+.  .|+     
T Consensus       333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~-----  404 (553)
T PRK12370        333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPT-----  404 (553)
T ss_pred             cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC-----
Confidence            76 66788888899999999999999999998775  3 4567888999999999999999999999885  343     


Q ss_pred             hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       326 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                            +...+..++..+...|++++|...+++.  ...| ++..+..+..++...|++++|...+.++....|.+....
T Consensus       405 ------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~  478 (553)
T PRK12370        405 ------RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAV  478 (553)
T ss_pred             ------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHH
Confidence                  2333444555677789999999999887  2235 455577788888999999999999999888888887777


Q ss_pred             HHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          403 VLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       403 ~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ..++..|...|  +.|...++.+.+.
T Consensus       479 ~~l~~~~~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        479 NLLYAEYCQNS--ERALPTIREFLES  502 (553)
T ss_pred             HHHHHHHhccH--HHHHHHHHHHHHH
Confidence            78888888888  4888888887654

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.24  E-value=2.5e-08  Score=91.22  Aligned_cols=358  Identities=10%  Similarity=-0.003  Sum_probs=238.0

Q ss_pred             HHHHhhcCCCCChhHHHHHhhhcC--CCC-cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc-chHHHHHHHHHcc
Q 010881           26 IIGFCSASDIGDLSHGYRLFVCLQ--YRT-TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN-YTFSFILRACADT  101 (498)
Q Consensus        26 l~~~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~  101 (498)
                      .-+-|-+.  |.+++|.+.+.+..  .|| ++.|.....+|...|++++..+---+.++  +.|+- ..+..-..++-..
T Consensus       121 ~GN~~f~~--kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~l  196 (606)
T KOG0547|consen  121 KGNKFFRN--KKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQL  196 (606)
T ss_pred             hhhhhhhc--ccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHhh
Confidence            33456666  89999999999876  466 77888888899999999998887777776  44542 2333344445555


Q ss_pred             CCcHHHH----------------------HHHHHH--------HH-hC--CCCchhHHHHHHHHHHhC--------C---
Q 010881          102 SCLFVGL----------------------ICHAQV--------IR-LG--WESYDFVLNGLLHLYATC--------N---  137 (498)
Q Consensus       102 g~~~~a~----------------------~~~~~~--------~~-~~--~~~~~~~~~~l~~~~~~~--------g---  137 (498)
                      |++++++                      ++++..        .+ .+  +-|+.....+....+...        +   
T Consensus       197 g~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ks  276 (606)
T KOG0547|consen  197 GKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKS  276 (606)
T ss_pred             ccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccc
Confidence            5555443                      122111        11 11  224444444444333211        1   


Q ss_pred             --ChhhHHHHhhccC--------------------CC-----Chhh----HHHHHH--HHHccCCHHHHHHHHhhCCCC-
Q 010881          138 --CMDPARKLFDMSV--------------------NR-----DVIS----WTSLIN--GYAKSGQISIARQMFDKMPEK-  183 (498)
Q Consensus       138 --~~~~a~~~~~~~~--------------------~~-----~~~~----~~~li~--~~~~~~~~~~A~~~~~~~~~~-  183 (498)
                        ...++.+.+....                    .+     |...    -..++.  -+.-.|+.-.|..-|+..... 
T Consensus       277 Da~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~  356 (606)
T KOG0547|consen  277 DAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLD  356 (606)
T ss_pred             hhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcC
Confidence              1122222221110                    01     1111    111111  123467777787777777642 


Q ss_pred             --ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 010881          184 --NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI  261 (498)
Q Consensus       184 --~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  261 (498)
                        +...|--+...|....+.++....|.+..+.+ +-|+.+|..-.+...-.+++++|..-|+..+... +.+...|-.+
T Consensus       357 ~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~-pe~~~~~iQl  434 (606)
T KOG0547|consen  357 PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAISLD-PENAYAYIQL  434 (606)
T ss_pred             cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcC-hhhhHHHHHH
Confidence              33347778889999999999999999998764 3355567666677777889999999999988775 5566667777


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHH
Q 010881          262 IDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC  338 (498)
Q Consensus       262 ~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~  338 (498)
                      .-+..+.++++++...|++..+  | .+..|+-....+..++++++|.+.|+...+.  .|+.     +++..+..++..
T Consensus       435 ~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~-----~~~~v~~~plV~  507 (606)
T KOG0547|consen  435 CCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPRE-----HLIIVNAAPLVH  507 (606)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--cccc-----ccccccchhhhh
Confidence            7777789999999999999886  3 5678999999999999999999999999874  3432     122222222211


Q ss_pred             -HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881          339 -LVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       339 -l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  396 (498)
                       -+-.+.-.+++..|..++++. .+.| ....|..|...-.+.|+.++|+++|++...+-.
T Consensus       508 Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lAr  568 (606)
T KOG0547|consen  508 KALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLAR  568 (606)
T ss_pred             hhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence             111222458999999999998 7777 677899999999999999999999999877543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.23  E-value=2.9e-10  Score=98.23  Aligned_cols=230  Identities=12%  Similarity=0.041  Sum_probs=195.1

Q ss_pred             HHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccC
Q 010881          158 TSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV-GALTACAFLG  234 (498)
Q Consensus       158 ~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~  234 (498)
                      +-+..+|.+.|.+.+|++.|+...+  |-+.||-.|-+.|.+..+++.|+.+|.+-++.  .|-.+||. -....+...+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence            5688899999999999999987763  57889999999999999999999999998874  56666665 4556677889


Q ss_pred             ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 010881          235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMR  311 (498)
Q Consensus       235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  311 (498)
                      +.++|.++++.+.+.. +.++....++...|.-.++.+.|.+.|+++.+   .++..|+.+.-+|.-.++++-++..|.+
T Consensus       305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            9999999999998876 77788888888888899999999999998775   6788999999999999999999999999


Q ss_pred             HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010881          312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVE  389 (498)
Q Consensus       312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~  389 (498)
                      .+..--.|+.          -..+|..+.......||+.-|.+.|+-. .-.| +...++.|.-.-.+.|++++|..+++
T Consensus       384 Alstat~~~~----------aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~  453 (478)
T KOG1129|consen  384 ALSTATQPGQ----------AADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLN  453 (478)
T ss_pred             HHhhccCcch----------hhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence            8876444442          4678889999999999999999999987 3234 67889999988899999999999999


Q ss_pred             HHHhcCCCCch
Q 010881          390 SLVERSLDHEG  400 (498)
Q Consensus       390 ~~~~~~~~~~~  400 (498)
                      .+....|+-..
T Consensus       454 ~A~s~~P~m~E  464 (478)
T KOG1129|consen  454 AAKSVMPDMAE  464 (478)
T ss_pred             HhhhhCccccc
Confidence            99999887443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.21  E-value=1.2e-07  Score=91.50  Aligned_cols=405  Identities=14%  Similarity=0.057  Sum_probs=263.8

Q ss_pred             HHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 010881            8 QSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDF   84 (498)
Q Consensus         8 ~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~   84 (498)
                      +..+....+..++.+|..|.-+...+  |+++.+-+.|+....   .....|+.+-..+...|.--.|+.+++.-....-
T Consensus       311 ~~k~r~~~~qnd~ai~d~Lt~al~~~--g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~  388 (799)
T KOG4162|consen  311 LRKLRLKKFQNDAAIFDHLTFALSRC--GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE  388 (799)
T ss_pred             HHHHHHhhhcchHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc
Confidence            44555566778999999999999999  999999999998653   3556788999999999999999999988765432


Q ss_pred             CCC-cchHHHHHHHHH-ccCCcHHHHHHHHHHHHhC--C--CCchhHHHHHHHHHHhC----C-------ChhhHHHHhh
Q 010881           85 LPN-NYTFSFILRACA-DTSCLFVGLICHAQVIRLG--W--ESYDFVLNGLLHLYATC----N-------CMDPARKLFD  147 (498)
Q Consensus        85 ~p~-~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~~~~~----g-------~~~~a~~~~~  147 (498)
                      .|+ ...+-..-..|. +.+..+++..+..+++...  .  ......+..+.-+|...    .       ...++.+.++
T Consensus       389 ~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale  468 (799)
T KOG4162|consen  389 QPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE  468 (799)
T ss_pred             CCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence            343 333444444444 4577788888777777621  1  11223333333333321    1       1234555666


Q ss_pred             ccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-
Q 010881          148 MSVN---RDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-  219 (498)
Q Consensus       148 ~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-  219 (498)
                      +.++   .|+.+.-.+.--|+..++++.|.+..++..    ..+...|..+...+...+++.+|+.+.+.....  .|+ 
T Consensus       469 ~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N  546 (799)
T KOG4162|consen  469 EAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDN  546 (799)
T ss_pred             HHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhh
Confidence            6543   244444444455777889999888877664    347788999999999999999999998887653  111 


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHH---------------------hCC------CC-ChhHHHHHHHHHHh---c
Q 010881          220 HAGIVGALTACAFLGALDQGRWIHAYVDR---------------------NGI------EL-DIILGTAIIDMYAK---C  268 (498)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~---------------------~~~------~~-~~~~~~~l~~~~~~---~  268 (498)
                      ..-...-+..-...++.+++......+..                     .|.      +. ...++..+......   .
T Consensus       547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~  626 (799)
T KOG4162|consen  547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS  626 (799)
T ss_pred             hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence            00000111111123344443332222211                     010      00 11222222221111   1


Q ss_pred             CCHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881          269 GCIETACSVFDSMPNRD------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL  342 (498)
Q Consensus       269 g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~  342 (498)
                      -..+.....+.....|+      ...|......+...+..++|...+.+....  .|           -....|......
T Consensus       627 ~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~-----------l~~~~~~~~G~~  693 (799)
T KOG4162|consen  627 AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DP-----------LSASVYYLRGLL  693 (799)
T ss_pred             cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--ch-----------hhHHHHHHhhHH
Confidence            11111111122222232      234556667788889999999888887552  22           256778888888


Q ss_pred             HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCCchHHHHHHHHhHhcCCcchH
Q 010881          343 LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKE--TVESLVERSLDHEGVHVLLSNIYASTEQWNGV  418 (498)
Q Consensus       343 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  418 (498)
                      +...|...+|.+.|... .+.| ++.+..++...+.+.|+..-|..  ++..+++.+|.++..|+.++.++.+.|+.++|
T Consensus       694 ~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  694 LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence            89999999999999887 6777 57788889999999998888888  99999999999999999999999999999999


Q ss_pred             HHHHHhhhhCC
Q 010881          419 EKVRRGMEDNE  429 (498)
Q Consensus       419 ~~~~~~m~~~~  429 (498)
                      .+.|....+..
T Consensus       774 aecf~aa~qLe  784 (799)
T KOG4162|consen  774 AECFQAALQLE  784 (799)
T ss_pred             HHHHHHHHhhc
Confidence            99999887653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=5e-08  Score=90.47  Aligned_cols=367  Identities=13%  Similarity=0.053  Sum_probs=227.4

Q ss_pred             CChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-cchHHHHHHHHHccCCcHHHHHHH
Q 010881           36 GDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN-NYTFSFILRACADTSCLFVGLICH  111 (498)
Q Consensus        36 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~  111 (498)
                      |+++.|...|....   .+|.+.|+.-..+|+..|++++|++=-.+-++  +.|+ ...|+..-.++.-.|++++|...|
T Consensus        16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay   93 (539)
T KOG0548|consen   16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGLGDYEEAILAY   93 (539)
T ss_pred             ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence            99999999998744   56888899999999999999999877666666  6676 456888989999999999999999


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhh------ccC-CC------ChhhHHHHHHHHHc----------cC
Q 010881          112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFD------MSV-NR------DVISWTSLINGYAK----------SG  168 (498)
Q Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~------~~~-~~------~~~~~~~li~~~~~----------~~  168 (498)
                      .+-++..+ .+...++.+..++...  . .+.+.|.      ... .|      ....|..++..+-+          -.
T Consensus        94 ~~GL~~d~-~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~  169 (539)
T KOG0548|consen   94 SEGLEKDP-SNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP  169 (539)
T ss_pred             HHHhhcCC-chHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence            99888753 3666777777776211  0 1111111      110 00      11123333322211          11


Q ss_pred             CHHHHHHHHhhCC----------------CC------------C----------hhHHHHHHHHHHhCCCHhHHHHHHHH
Q 010881          169 QISIARQMFDKMP----------------EK------------N----------AVSWSAMINGYVQVDLFKEALEHFNY  210 (498)
Q Consensus       169 ~~~~A~~~~~~~~----------------~~------------~----------~~~~~~li~~~~~~g~~~~a~~~~~~  210 (498)
                      .+..|.-.+....                .|            +          ......+.++..+..+++.|++-+..
T Consensus       170 r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~  249 (539)
T KOG0548|consen  170 RLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAK  249 (539)
T ss_pred             HHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            1112222211110                00            0          11244556666666777777777777


Q ss_pred             HHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh-------HHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010881          211 MQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII-------LGTAIIDMYAKCGCIETACSVFDSMPN  283 (498)
Q Consensus       211 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~  283 (498)
                      .....  -+..-++..-.++...|.+..+...-....+.|.. ...       ....+..+|.+.++++.|...|.+...
T Consensus       250 a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt  326 (539)
T KOG0548|consen  250 ALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT  326 (539)
T ss_pred             HHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh
Confidence            66643  33334445555566666666655555444444311 111       111233355555666666666665432


Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 010881          284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE  362 (498)
Q Consensus       284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  362 (498)
                      +...     -....+....+++........-  +.|.          . ..-.-.-...+.+.|++.+|...|.++ ...
T Consensus       327 e~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe----------~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~  388 (539)
T KOG0548|consen  327 EHRT-----PDLLSKLKEAEKALKEAERKAY--INPE----------K-AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD  388 (539)
T ss_pred             hhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChh----------H-HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            1100     0011122223333333333222  1111          0 111222367788999999999999998 445


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          363 P-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       363 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      | |...|....-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|+.|.+.|++..+.+
T Consensus       389 P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  389 PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6 788999999999999999999999999999999999999999999999999999999998887655

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.17  E-value=6.1e-09  Score=95.28  Aligned_cols=211  Identities=13%  Similarity=-0.007  Sum_probs=107.3

Q ss_pred             CHhHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010881          200 LFKEALEHFNYMQLCG-FRPN--HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS  276 (498)
Q Consensus       200 ~~~~a~~~~~~m~~~g-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  276 (498)
                      ..+.++.-+.++.... ..|+  ...|......+...|+.++|...|....+.. +.+...|+.+...|...|+++.|..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3445555555554321 1111  2234444445555566666666666655543 4455666666666666666666666


Q ss_pred             HHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 010881          277 VFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK  353 (498)
Q Consensus       277 ~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  353 (498)
                      .|++..+  | +..+|..+...+...|++++|.+.|++..+.  .|+           +. ........+...++.++|.
T Consensus       120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~-----------~~-~~~~~~~l~~~~~~~~~A~  185 (296)
T PRK11189        120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPN-----------DP-YRALWLYLAESKLDPKQAK  185 (296)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------CH-HHHHHHHHHHccCCHHHHH
Confidence            6666543  2 3445666666666666666666666666553  232           11 1111112233455666666


Q ss_pred             HHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCchHHHHHHHHhHhcCCcchHHHHHHh
Q 010881          354 KVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLV-------ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG  424 (498)
Q Consensus       354 ~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  424 (498)
                      ..|.+.  ...|+...+   .......|+...+ +.++.+.       +..|+.+.+|..++.++.+.|++++|...|++
T Consensus       186 ~~l~~~~~~~~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~  261 (296)
T PRK11189        186 ENLKQRYEKLDKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKL  261 (296)
T ss_pred             HHHHHHHhhCCccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666543  222222111   1122233443332 2233332       33444455666677777777777777777766


Q ss_pred             hhhCC
Q 010881          425 MEDNE  429 (498)
Q Consensus       425 m~~~~  429 (498)
                      ..+.+
T Consensus       262 Al~~~  266 (296)
T PRK11189        262 ALANN  266 (296)
T ss_pred             HHHhC
Confidence            65544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.15  E-value=4.2e-09  Score=87.05  Aligned_cols=161  Identities=12%  Similarity=0.030  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV  333 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~  333 (498)
                      +...|.-.|...|+...|..-+++..+.   +..+|..+...|.+.|+.+.|.+.|++.+.  +.|+           +.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~-----------~G  103 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPN-----------NG  103 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCC-----------cc
Confidence            4455667788888888888888887763   345777788888888888888888888876  3454           57


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM---PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      .+.|...-.+|..|++++|...|++.   +..| -..+|..+.-+..+.|+.+.|...|++.++.+|+.+.....++...
T Consensus       104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~  183 (250)
T COG3063         104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLH  183 (250)
T ss_pred             chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHH
Confidence            77888888888888888888888887   3222 3567778877778888888888888888888888888888888888


Q ss_pred             HhcCCcchHHHHHHhhhhCCc
Q 010881          410 ASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      .+.|++-.|..+++.....+.
T Consensus       184 ~~~~~y~~Ar~~~~~~~~~~~  204 (250)
T COG3063         184 YKAGDYAPARLYLERYQQRGG  204 (250)
T ss_pred             HhcccchHHHHHHHHHHhccc
Confidence            888888888888888776554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.15  E-value=4.7e-08  Score=80.96  Aligned_cols=199  Identities=14%  Similarity=-0.055  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA  266 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  266 (498)
                      +...|.-.|...|++..|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|+...+.. +-+..+.|...-.+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            45567778889999999999999988863 3344577778888888899999999998888876 667888899999999


Q ss_pred             hcCCHHHHHHHHhhCCC-C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH
Q 010881          267 KCGCIETACSVFDSMPN-R----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD  341 (498)
Q Consensus       267 ~~g~~~~A~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~  341 (498)
                      ..|++++|...|+.... |    -..+|..+.-+..+.|+.+.|...|++.++.  .|+           ...+...+..
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~-----------~~~~~l~~a~  181 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQ-----------FPPALLELAR  181 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcC-----------CChHHHHHHH
Confidence            99999999999998764 4    3468888888888999999999999998884  444           3567778888


Q ss_pred             HHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881          342 LLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG  400 (498)
Q Consensus       342 ~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  400 (498)
                      ...+.|++..|..+++..  ...++..++...|..-...|+.+.+-+.=.++.+..|....
T Consensus       182 ~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e  242 (250)
T COG3063         182 LHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE  242 (250)
T ss_pred             HHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence            899999999999999887  44588888888888888899998888888888888887653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.14  E-value=1.6e-06  Score=82.51  Aligned_cols=387  Identities=10%  Similarity=0.014  Sum_probs=246.9

Q ss_pred             CChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHH
Q 010881           36 GDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICH  111 (498)
Q Consensus        36 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~  111 (498)
                      |+-++|......-..   .+.++|..+.-.+....++++|++.|..+..  +.| |...+.-+.-.-+..|+++......
T Consensus        55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~--~~~dN~qilrDlslLQ~QmRd~~~~~~tr  132 (700)
T KOG1156|consen   55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALK--IEKDNLQILRDLSLLQIQMRDYEGYLETR  132 (700)
T ss_pred             cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            888999888876553   4678899999888889999999999999988  445 4455666655567788888888888


Q ss_pred             HHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC-----CCChhhHHHH------HHHHHccCCHHHHHHHHhhC
Q 010881          112 AQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV-----NRDVISWTSL------INGYAKSGQISIARQMFDKM  180 (498)
Q Consensus       112 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~l------i~~~~~~~~~~~A~~~~~~~  180 (498)
                      .++++..+ .....|..++.++.-.|+...|..+++...     .++...+...      .....+.|.++.|.+.+..-
T Consensus       133 ~~LLql~~-~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~  211 (700)
T KOG1156|consen  133 NQLLQLRP-SQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN  211 (700)
T ss_pred             HHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence            88777643 245667778888888899999988886543     2444443322      23456788888888888776


Q ss_pred             CCC--Chh-HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-ccC-ChHHHHHHHHHHHHhCCCCCh
Q 010881          181 PEK--NAV-SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA-FLG-ALDQGRWIHAYVDRNGIELDI  255 (498)
Q Consensus       181 ~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~-~~~~a~~~~~~~~~~~~~~~~  255 (498)
                      ...  |-. .-.+-...+.+.+++++|..+|..+...  .||..-|...+..+. ... ..+....+|....+.  .|..
T Consensus       212 e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~  287 (700)
T KOG1156|consen  212 EKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRH  287 (700)
T ss_pred             hhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Cccc
Confidence            543  222 2334566788899999999999999886  688887776665554 233 333333556555443  1111


Q ss_pred             hHHHHHHHHHHhcCCHH-HHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhh--hhh-CCC
Q 010881          256 ILGTAIIDMYAKCGCIE-TACSVFDSMPNRD-VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMS--EIY-GIE  330 (498)
Q Consensus       256 ~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~~-~~~  330 (498)
                      ..-..+--....-..+. ..-.++..+.++. +.++..+...|-.....+-..++.-.+ ..++.++..+.  ..- .-+
T Consensus       288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y-~~~L~~~~~f~~~D~~~~E~  366 (700)
T KOG1156|consen  288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSY-QHSLSGTGMFNFLDDGKQEP  366 (700)
T ss_pred             ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHH-HhhcccccCCCcccccccCC
Confidence            11111111111112222 2233334333332 344555554443333222111111111 22222221000  000 114


Q ss_pred             CChHH--HHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          331 PGVQH--YGCLVDLLGRAGMLEAAKKVVREM-PIEPDNY-VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       331 ~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      |+...  +-.++..+-+.|+++.|..+++.. +-.|+.+ .|..=.+.+...|+++.|..+++++.+++-.+...-..-+
T Consensus       367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcA  446 (700)
T KOG1156|consen  367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCA  446 (700)
T ss_pred             chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHH
Confidence            44444  456788899999999999999988 6677543 4545557788999999999999999999876654444677


Q ss_pred             HHhHhcCCcchHHHHHHhhhhCCc
Q 010881          407 NIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       407 ~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      ....++.+.++|.++...+-+.|.
T Consensus       447 KYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  447 KYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHccccHHHHHHHHHhhhccc
Confidence            888899999999999998887764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.14  E-value=9.1e-07  Score=83.14  Aligned_cols=374  Identities=12%  Similarity=0.025  Sum_probs=204.7

Q ss_pred             HHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCC
Q 010881           27 IGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC  103 (498)
Q Consensus        27 ~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  103 (498)
                      ++.+.+.  |++++|.+...++..   .+...+.+=+-++.+.+++++|+.+.+.-..  ...+..-+---.-+..+.+.
T Consensus        19 ln~~~~~--~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~--~~~~~~~~fEKAYc~Yrlnk   94 (652)
T KOG2376|consen   19 LNRHGKN--GEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA--LLVINSFFFEKAYCEYRLNK   94 (652)
T ss_pred             HHHhccc--hHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch--hhhcchhhHHHHHHHHHccc
Confidence            4555555  677777776666542   3445555555566666666666644433211  01111111111223335566


Q ss_pred             cHHHHHHHHHHHHhCCCC-chhHHHHHHHHHHhCCChhhHHHHhhccCC-------------------------------
Q 010881          104 LFVGLICHAQVIRLGWES-YDFVLNGLLHLYATCNCMDPARKLFDMSVN-------------------------------  151 (498)
Q Consensus       104 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------------------------------  151 (498)
                      .++|...++     |..+ +..+...-...+.+.|++++|..+|+.+.+                               
T Consensus        95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~  169 (652)
T KOG2376|consen   95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE  169 (652)
T ss_pred             HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence            666666555     2222 233455555556666666666666654421                               


Q ss_pred             CChhhHHHH---HHHHHccCCHHHHHHHHhhCC--------CCC-----h-----hHHHHHHHHHHhCCCHhHHHHHHHH
Q 010881          152 RDVISWTSL---INGYAKSGQISIARQMFDKMP--------EKN-----A-----VSWSAMINGYVQVDLFKEALEHFNY  210 (498)
Q Consensus       152 ~~~~~~~~l---i~~~~~~~~~~~A~~~~~~~~--------~~~-----~-----~~~~~li~~~~~~g~~~~a~~~~~~  210 (498)
                      ....+|..+   ...++..|++.+|+++++...        ..|     .     ..--.|.-.+-..|+.++|.++|..
T Consensus       170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~  249 (652)
T KOG2376|consen  170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD  249 (652)
T ss_pred             CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            112233332   334667899999999998772        111     1     1122344566778999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHH---HHhccCC-hH----------------HHHH------------------HHH----HHHH
Q 010881          211 MQLCGFRPNHAGIVGALT---ACAFLGA-LD----------------QGRW------------------IHA----YVDR  248 (498)
Q Consensus       211 m~~~g~~p~~~~~~~ll~---~~~~~~~-~~----------------~a~~------------------~~~----~~~~  248 (498)
                      ..+.. .+|........+   ++..-.+ ++                ....                  +|.    +..+
T Consensus       250 ~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~  328 (652)
T KOG2376|consen  250 IIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRE  328 (652)
T ss_pred             HHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            88764 344322111111   1110000 00                0000                  000    0000


Q ss_pred             --hCCCCC--hhHHHHHHHHHHh--cCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhcCChHHHHHHHH--------
Q 010881          249 --NGIELD--IILGTAIIDMYAK--CGCIETACSVFDSMPNR----DVFAYTSLISGLANHDQSASAIELFM--------  310 (498)
Q Consensus       249 --~~~~~~--~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~--------  310 (498)
                        ...++.  ...+..++....+  ......|..++....+.    ....--.+++.....|+++.|.+++.        
T Consensus       329 ~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s  408 (652)
T KOG2376|consen  329 LSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS  408 (652)
T ss_pred             HHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence              011111  1223333333222  12345555555555432    23455566777888999999999998        


Q ss_pred             HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCCHH----HHHHHHHHHHhcCCH
Q 010881          311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-----PIEPDNY----VLGALLNACRVHGDV  381 (498)
Q Consensus       311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~----~~~~l~~~~~~~g~~  381 (498)
                      .+.+.+.              .+.+...++..+.+.++-+.|-.++.+.     .-.+...    ++..+...-.+.|+-
T Consensus       409 s~~~~~~--------------~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~  474 (652)
T KOG2376|consen  409 SILEAKH--------------LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNE  474 (652)
T ss_pred             hhhhhcc--------------ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCch
Confidence            4433322              3346667788888888877777777665     1112222    333344445677999


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881          382 DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM  425 (498)
Q Consensus       382 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  425 (498)
                      ++|..+++++++.+|++..+...++.+|++. +.+.|..+-+.+
T Consensus       475 ~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  475 EEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            9999999999999999999999999998876 446666665444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.14  E-value=1.4e-06  Score=82.63  Aligned_cols=215  Identities=10%  Similarity=0.025  Sum_probs=124.2

Q ss_pred             CCCHhHHHHHHHHHHHcCCCCC------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhc
Q 010881          198 VDLFKEALEHFNYMQLCGFRPN------HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD---IILGTAIIDMYAKC  268 (498)
Q Consensus       198 ~g~~~~a~~~~~~m~~~g~~p~------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  268 (498)
                      .|+..+-...|.+..+. +.|.      ...|..+...|-..|+++.|..+|+...+...+.-   ..+|..-...=.+.
T Consensus       360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            45566666666666543 2331      22355556666677777777777777665443221   23344444444455


Q ss_pred             CCHHHHHHHHhhCCC-C--------------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh
Q 010881          269 GCIETACSVFDSMPN-R--------------------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY  327 (498)
Q Consensus       269 g~~~~A~~~~~~~~~-~--------------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~  327 (498)
                      .+++.|.++.+.... |                    +...|...+..--..|-++....+|+++.+..+.         
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria---------  509 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA---------  509 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC---------
Confidence            666777776665432 1                    2234555555555556667777777777665422         


Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC--CCC-HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCC-c
Q 010881          328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI--EPD-NYVLGALLNACRV---HGDVDLGKETVESLVERSLDH-E  399 (498)
Q Consensus       328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--~p~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~-~  399 (498)
                          ++.........+-...-++++.++|++- ++  .|+ ...|+..+.-+.+   ....+.|..+|+++++.-|+. .
T Consensus       510 ----TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~a  585 (835)
T KOG2047|consen  510 ----TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHA  585 (835)
T ss_pred             ----CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHH
Confidence                2233333444455667788899988886 22  233 3355555544332   237899999999999966642 2


Q ss_pred             -hHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          400 -GVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       400 -~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                       ..|...+..-.+-|....|..++++.-
T Consensus       586 KtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  586 KTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             224444455555677777888887753

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=4.1e-09  Score=98.31  Aligned_cols=254  Identities=10%  Similarity=-0.042  Sum_probs=186.3

Q ss_pred             HHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010881          193 NGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE  272 (498)
Q Consensus       193 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  272 (498)
                      .-+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+.. +-+..+..+|.-.|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence            34567888999988888888763 3355677777777788888888888888888776 667788888888888888888


Q ss_pred             HHHHHHhhCCCCC-hhHHHHHH---------HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881          273 TACSVFDSMPNRD-VFAYTSLI---------SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL  342 (498)
Q Consensus       273 ~A~~~~~~~~~~~-~~~~~~li---------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~  342 (498)
                      .|...|+...... ...|...-         ..+.......+..++|-++....           +..+|+.+...|.-.
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~-----------~~~~DpdvQ~~LGVL  439 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQL-----------PTKIDPDVQSGLGVL  439 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhC-----------CCCCChhHHhhhHHH
Confidence            8888888764211 00000000         11222223344555555554431           224567889999999


Q ss_pred             HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHH
Q 010881          343 LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK  420 (498)
Q Consensus       343 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  420 (498)
                      |.-.|.+++|...|+.+ .++| |...||.|...++...+.++|+..|++++++.|....+.+.|+..|...|.|+||.+
T Consensus       440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            99999999999999998 7788 788999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhc
Q 010881          421 VRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSL  475 (498)
Q Consensus       421 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  475 (498)
                      .|-......-..               .-.....++ .+.+|..|+..+..|...
T Consensus       520 hlL~AL~mq~ks---------------~~~~~~~~~-se~iw~tLR~als~~~~~  558 (579)
T KOG1125|consen  520 HLLEALSMQRKS---------------RNHNKAPMA-SENIWQTLRLALSAMNRS  558 (579)
T ss_pred             HHHHHHHhhhcc---------------cccccCCcc-hHHHHHHHHHHHHHcCCc
Confidence            887765432110               000011122 578999999777766544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=7e-08  Score=86.47  Aligned_cols=303  Identities=11%  Similarity=-0.011  Sum_probs=211.9

Q ss_pred             CCcchHHHHHHHHHc--cCCcHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhH---HH
Q 010881           86 PNNYTFSFILRACAD--TSCLFVGLICHAQVIRL-GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISW---TS  159 (498)
Q Consensus        86 p~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~  159 (498)
                      |+..+....+.+++.  .++-..+.+.+-.+... -++.|+.....+..++...|+.++|...|++..-.|+.+.   ..
T Consensus       192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~  271 (564)
T KOG1174|consen  192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL  271 (564)
T ss_pred             CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence            444444455555433  34444444443333332 3466788889999999999999999999998654443322   22


Q ss_pred             HHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh
Q 010881          160 LINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL  236 (498)
Q Consensus       160 li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  236 (498)
                      ....+.+.|+.+.-..+...+...   ....|-.-.......++++.|+.+-++..+.. +-+...|..-...+...++.
T Consensus       272 Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~  350 (564)
T KOG1174|consen  272 YAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERH  350 (564)
T ss_pred             HHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccch
Confidence            233455677777766665555432   23344444555667889999999998887642 22334555555667889999


Q ss_pred             HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHH-HHHHhc-CChHHHHHHHHH
Q 010881          237 DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLI-SGLANH-DQSASAIELFMR  311 (498)
Q Consensus       237 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li-~~~~~~-~~~~~a~~~~~~  311 (498)
                      ++|.-.|+...... +.+...|.-|+.+|...|++.+|.-.-+...+   .+..+.+.+. ..+.-. .--++|..++++
T Consensus       351 ~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek  429 (564)
T KOG1174|consen  351 TQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEK  429 (564)
T ss_pred             HHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHh
Confidence            99999999888765 67889999999999999999998766554322   2344444332 222222 223678888887


Q ss_pred             HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010881          312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVES  390 (498)
Q Consensus       312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  390 (498)
                      .+.  +.|+           -....+.+...+...|..+.+..++++. ...||....+.|...+...+.+++|++.|..
T Consensus       430 ~L~--~~P~-----------Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~  496 (564)
T KOG1174|consen  430 SLK--INPI-----------YTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYK  496 (564)
T ss_pred             hhc--cCCc-----------cHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            665  3444           2566777888999999999999999998 6789999999999999999999999999999


Q ss_pred             HHhcCCCCchHHH
Q 010881          391 LVERSLDHEGVHV  403 (498)
Q Consensus       391 ~~~~~~~~~~~~~  403 (498)
                      +++.+|++..+..
T Consensus       497 ALr~dP~~~~sl~  509 (564)
T KOG1174|consen  497 ALRQDPKSKRTLR  509 (564)
T ss_pred             HHhcCccchHHHH
Confidence            9999999865443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.07  E-value=4.8e-07  Score=79.32  Aligned_cols=291  Identities=11%  Similarity=0.046  Sum_probs=178.2

Q ss_pred             HHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHH---HHHccCCHHHHHHHHhhCCCCChhHHHH---HHHHHHhCCCH
Q 010881          128 GLLHLYATCNCMDPARKLFDMSVNRDVISWTSLIN---GYAKSGQISIARQMFDKMPEKNAVSWSA---MINGYVQVDLF  201 (498)
Q Consensus       128 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~g~~  201 (498)
                      -+.+.+...|++..|+.-|...++.|+..|.++.+   .|...|+-..|+.-|....+..+..+.+   -...+.+.|.+
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gel  122 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGEL  122 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccH
Confidence            34444455555555555555555555555444432   3444444444444444443211111111   12344555666


Q ss_pred             hHHHHHHHHHHHcCCCCC------------H--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881          202 KEALEHFNYMQLCGFRPN------------H--AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK  267 (498)
Q Consensus       202 ~~a~~~~~~m~~~g~~p~------------~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  267 (498)
                      ++|..=|+..++....-+            .  ......+..+...|+...|+.....+.+.. +.|...+..-..+|..
T Consensus       123 e~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~  201 (504)
T KOG0624|consen  123 EQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIA  201 (504)
T ss_pred             HHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHh
Confidence            666666665554421100            0  011222334556678888888888887775 7788888888888888


Q ss_pred             cCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH-----
Q 010881          268 CGCIETACSVFDSMP---NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL-----  339 (498)
Q Consensus       268 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l-----  339 (498)
                      .|++..|+.-++...   ..+..++.-+-..+...|+.+.++...++-++  +.||...        --..|-.|     
T Consensus       202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~--------Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKL--------CFPFYKKLKKVVK  271 (504)
T ss_pred             cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhh--------HHHHHHHHHHHHH
Confidence            888888877665543   45666666677777888888888888877766  3455300        00111111     


Q ss_pred             ----HHHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          340 ----VDLLGRAGMLEAAKKVVREM-PIEPDN-----YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       340 ----~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                          +......+++.++.+-.+.. ...|..     ..+..+-.++...+++.+|++...++++.+|++..++..-+.+|
T Consensus       272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~  351 (504)
T KOG0624|consen  272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAY  351 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence                22344567777777777665 444542     23334445667788999999999999999999988888899999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      .-...+|+|+.-|++..+.+
T Consensus       352 l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  352 LGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             hhhHHHHHHHHHHHHHHhcC
Confidence            99999999999888887654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.06  E-value=3.4e-06  Score=81.93  Aligned_cols=279  Identities=11%  Similarity=0.065  Sum_probs=187.8

Q ss_pred             HHHhhcCCCCChhHHHHHhhhcCC--CC-cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHH----
Q 010881           27 IGFCSASDIGDLSHGYRLFVCLQY--RT-TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA----   99 (498)
Q Consensus        27 ~~~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~----   99 (498)
                      ..++...  |++++|.+.++.-..  .| ..........+.+.|+.++|..+|..+++.+  |+...|...+..+.    
T Consensus        11 ~~il~e~--g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen   11 NSILEEA--GDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHC--CCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence            3556677  999999999987553  23 3456677788999999999999999999855  77777766655544    


Q ss_pred             --ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChh-hHHHHhhccCCCC-hhhHHHHHHHHHccCCHHHHHH
Q 010881          100 --DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMD-PARKLFDMSVNRD-VISWTSLINGYAKSGQISIARQ  175 (498)
Q Consensus       100 --~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~  175 (498)
                        ...+.+....+++++...-+..+..-.-. +. +..-..+. .+..++..+.... +..|+.+-..|......+-..+
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~-L~-~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLP-LD-FLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhCccccchhHhh-cc-cCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHH
Confidence              12256777888888877654322221111 11 11111122 1222233333333 3445555555554444443344


Q ss_pred             HHhhCC------------------CCCh--hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhccC
Q 010881          176 MFDKMP------------------EKNA--VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-HAGIVGALTACAFLG  234 (498)
Q Consensus       176 ~~~~~~------------------~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~  234 (498)
                      ++....                  .|+.  .++..+...|...|++++|+.+.++..+.  .|+ ...|..-...+-..|
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence            433321                  1222  24456677888999999999999999886  565 456777788888999


Q ss_pred             ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh------------hHHHHHHHHHHhcCCh
Q 010881          235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV------------FAYTSLISGLANHDQS  302 (498)
Q Consensus       235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------~~~~~li~~~~~~~~~  302 (498)
                      ++.+|....+...... .-|-.+-+-.+..+.++|++++|.+++.....++.            ........+|.+.|++
T Consensus       243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~  321 (517)
T PF12569_consen  243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY  321 (517)
T ss_pred             CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence            9999999999999876 56777778888999999999999999888776441            1223346689999999


Q ss_pred             HHHHHHHHHHHH
Q 010881          303 ASAIELFMRMQL  314 (498)
Q Consensus       303 ~~a~~~~~~m~~  314 (498)
                      ..|+..|..+.+
T Consensus       322 ~~ALk~~~~v~k  333 (517)
T PF12569_consen  322 GLALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHHH
Confidence            999987776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.7e-06  Score=81.38  Aligned_cols=353  Identities=10%  Similarity=0.007  Sum_probs=216.6

Q ss_pred             HHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881           60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM  139 (498)
Q Consensus        60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  139 (498)
                      +..+..++++++|.....++...+ +-|...+..-+-+....+.++.|+.+.+.-...  ..+...+.--+.+..+.+..
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~   95 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKL   95 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccH
Confidence            456678899999999999999854 335666788888888999999998544332110  11111111223445578999


Q ss_pred             hhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC-------------------------------ChhHH
Q 010881          140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK-------------------------------NAVSW  188 (498)
Q Consensus       140 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-------------------------------~~~~~  188 (498)
                      |+|...++...+.+..+...-...+.+.|++++|..+|+.+.+.                               ...+|
T Consensus        96 Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~sy  175 (652)
T KOG2376|consen   96 DEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSY  175 (652)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchH
Confidence            99999999555556556666777888999999999999988431                               11134


Q ss_pred             HHH---HHHHHhCCCHhHHHHHHHHHHHcC-------CC------CCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881          189 SAM---INGYVQVDLFKEALEHFNYMQLCG-------FR------PNHAGI-VGALTACAFLGALDQGRWIHAYVDRNGI  251 (498)
Q Consensus       189 ~~l---i~~~~~~g~~~~a~~~~~~m~~~g-------~~------p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~  251 (498)
                      ..+   ...++..|++.+|+++++...+.+       -.      ....+. ..+.-.+-..|+.++|..++....+.. 
T Consensus       176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~-  254 (652)
T KOG2376|consen  176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN-  254 (652)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-
Confidence            333   235667899999999999883211       11      111111 122334457899999999999988876 


Q ss_pred             CCChhHH----HHHHHHHHhc---------------------------------------------CCHHHHHHHHhhCC
Q 010881          252 ELDIILG----TAIIDMYAKC---------------------------------------------GCIETACSVFDSMP  282 (498)
Q Consensus       252 ~~~~~~~----~~l~~~~~~~---------------------------------------------g~~~~A~~~~~~~~  282 (498)
                      ++|....    |.|+.+-...                                             +..+.+.++-..+.
T Consensus       255 ~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp  334 (652)
T KOG2376|consen  255 PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP  334 (652)
T ss_pred             CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence            4444322    2222111000                                             01111111111111


Q ss_pred             CC-ChhHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH--
Q 010881          283 NR-DVFAYTSLISGLAN--HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR--  357 (498)
Q Consensus       283 ~~-~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--  357 (498)
                      .. ....+.+++....+  ...+.++..++...-+.  .|.          -...+.-.++......|+++.|.+++.  
T Consensus       335 ~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~----------~s~~v~L~~aQl~is~gn~~~A~~il~~~  402 (652)
T KOG2376|consen  335 GMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPE----------KSKVVLLLRAQLKISQGNPEVALEILSLF  402 (652)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCc----------hhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            11 12234444443222  22355555555554432  111          124566667888889999999999998  


Q ss_pred             ------hC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCC---CCchHHHHHHHHhHhcCCcchHHHHHH
Q 010881          358 ------EM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE----RSL---DHEGVHVLLSNIYASTEQWNGVEKVRR  423 (498)
Q Consensus       358 ------~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~  423 (498)
                            .+ .+.-.+.+...+...+.+.++.+.|..+++.++.    ..+   ....++..++..-.+.|+-++|..+++
T Consensus       403 ~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~le  482 (652)
T KOG2376|consen  403 LESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLE  482 (652)
T ss_pred             hhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHH
Confidence                  44 3334455556677778888888888888888875    112   222345556666777899999999999


Q ss_pred             hhhhC
Q 010881          424 GMEDN  428 (498)
Q Consensus       424 ~m~~~  428 (498)
                      ++.+.
T Consensus       483 el~k~  487 (652)
T KOG2376|consen  483 ELVKF  487 (652)
T ss_pred             HHHHh
Confidence            99874

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.04  E-value=1.4e-07  Score=86.42  Aligned_cols=196  Identities=10%  Similarity=-0.142  Sum_probs=130.9

Q ss_pred             hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010881          185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM  264 (498)
Q Consensus       185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  264 (498)
                      ...|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|...|+...+.. +-+..++..+..+
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~  141 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA  141 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3457777778888888888888888887753 2345677788888888888888888888888764 4456777778888


Q ss_pred             HHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881          265 YAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL  342 (498)
Q Consensus       265 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~  342 (498)
                      +...|++++|.+.|+...+  |+..........+...++.++|...|.+..... .            |+...+ .+...
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~------------~~~~~~-~~~~~  207 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-D------------KEQWGW-NIVEF  207 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-C------------ccccHH-HHHHH
Confidence            8888999999988887765  322111111222345678899999887655321 1            111111 22222


Q ss_pred             HhhcCCHHH--HHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881          343 LGRAGMLEA--AKKVVREM-P----IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       343 ~~~~g~~~~--A~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  398 (498)
                        ..|+..+  +.+.+.+. .    +.| ....|..+...+...|++++|+..|+++++.+|.+
T Consensus       208 --~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~  269 (296)
T PRK11189        208 --YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN  269 (296)
T ss_pred             --HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence              3444433  33333221 1    112 34578889999999999999999999999999754

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.01  E-value=1.9e-05  Score=75.33  Aligned_cols=357  Identities=10%  Similarity=0.118  Sum_probs=243.2

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 010881           54 FIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL  132 (498)
Q Consensus        54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  132 (498)
                      ..|-.-+..+..+|++..-...|+..+.. .+..-...|...+......+-++.+..++++.++..+    ...+-.+..
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P----~~~eeyie~  178 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAP----EAREEYIEY  178 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCH----HHHHHHHHH
Confidence            46777788888899999999999887653 3444566788888888888889999999999887543    335667888


Q ss_pred             HHhCCChhhHHHHhhccCCC----------ChhhHHHHHHHHHccCCHH---HHHHHHhhCCCC----ChhHHHHHHHHH
Q 010881          133 YATCNCMDPARKLFDMSVNR----------DVISWTSLINGYAKSGQIS---IARQMFDKMPEK----NAVSWSAMINGY  195 (498)
Q Consensus       133 ~~~~g~~~~a~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~---~A~~~~~~~~~~----~~~~~~~li~~~  195 (498)
                      +++.+++++|.+.+...+..          +...|.-+.....+..+.-   ....+++.+...    -...|++|.+-|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            88999999999888776643          3344665555555443322   233445555432    245688999999


Q ss_pred             HhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----------------C------ChHHHHHHHHHHHHhC---
Q 010881          196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL----------------G------ALDQGRWIHAYVDRNG---  250 (498)
Q Consensus       196 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~---  250 (498)
                      .+.|++++|..+|++..+.  ..+..-|..+..+|+.-                +      +++-...-|+.+...+   
T Consensus       259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~  336 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL  336 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence            9999999999999988764  33444455555544321                1      1222223333332221   


Q ss_pred             --------CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---C------ChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010881          251 --------IELDIILGTAIIDMYAKCGCIETACSVFDSMPN---R------DVFAYTSLISGLANHDQSASAIELFMRMQ  313 (498)
Q Consensus       251 --------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~  313 (498)
                              -+.++..|..-+..  ..|+..+-..+|.++..   |      -...|..+...|-.+|+.+.|..+|++..
T Consensus       337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence                    12233333333332  24556666666665542   1      22468888889999999999999999987


Q ss_pred             HcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC-----------------CHHHHHHHHH
Q 010881          314 LEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEP-----------------DNYVLGALLN  373 (498)
Q Consensus       314 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p-----------------~~~~~~~l~~  373 (498)
                      .-...-         +.--..+|..-...=.+..+++.|+.++++.   +-.|                 +...|..++.
T Consensus       415 ~V~y~~---------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D  485 (835)
T KOG2047|consen  415 KVPYKT---------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD  485 (835)
T ss_pred             cCCccc---------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence            643211         1112566777777778889999999999987   2111                 2335666677


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881          374 ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  431 (498)
                      ..-..|-++....+|++++++..-.|......+..+....-++++.+++    ++|+.
T Consensus       486 leEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y----ErgI~  539 (835)
T KOG2047|consen  486 LEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY----ERGIS  539 (835)
T ss_pred             HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH----HcCCc
Confidence            7777889999999999999999888878888888888899999999999    66665

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=1e-06  Score=85.74  Aligned_cols=351  Identities=13%  Similarity=0.092  Sum_probs=219.9

Q ss_pred             ChhHHHHHH--HHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-C--------CCCC
Q 010881           19 DPFAVGKII--GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-D--------FLPN   87 (498)
Q Consensus        19 ~~~~~~~l~--~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~--------~~p~   87 (498)
                      |+.+-.+++  ++|..-  |+++.|.+-...+..  -..|..+.+.|.+.++.+-|.-.+-.|... |        -.|+
T Consensus       725 d~~TRkaml~FSfyvti--G~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~  800 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTI--GSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE  800 (1416)
T ss_pred             CHHHHHhhhceeEEEEe--ccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence            455556666  567777  999999887776553  357999999999999988887777666432 1        1222


Q ss_pred             cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC-ChhhHHHHHHHHHc
Q 010881           88 NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-DVISWTSLINGYAK  166 (498)
Q Consensus        88 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~  166 (498)
                       .+=.-+.......|.+++|+.+|++..+.+         .|=..|...|.+++|.++-+.-..- =..+|......+-.
T Consensus       801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea  870 (1416)
T KOG3617|consen  801 -EDEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA  870 (1416)
T ss_pred             -chhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence             222233334567899999999999988753         3446677889999999887643322 12456666666677


Q ss_pred             cCCHHHHHHHHhhCCCC-----------------------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881          167 SGQISIARQMFDKMPEK-----------------------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI  223 (498)
Q Consensus       167 ~~~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  223 (498)
                      .+|.+.|++.|++...+                       |...|.-....+-..|+.+.|+.+|.....         |
T Consensus       871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~  941 (1416)
T KOG3617|consen  871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y  941 (1416)
T ss_pred             hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence            78888888888876532                       333444444455566778888888776653         3


Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH-------
Q 010881          224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL-------  296 (498)
Q Consensus       224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~-------  296 (498)
                      -+++...|-.|+.++|-++-++   .   -|......|.+.|-..|++.+|..+|.+...     +..-|+.|       
T Consensus       942 fs~VrI~C~qGk~~kAa~iA~e---s---gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-----fsnAIRlcKEnd~~d 1010 (1416)
T KOG3617|consen  942 FSMVRIKCIQGKTDKAARIAEE---S---GDKAACYHLARMYENDGDVVKAVKFFTRAQA-----FSNAIRLCKENDMKD 1010 (1416)
T ss_pred             hhheeeEeeccCchHHHHHHHh---c---ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHhcCHHH
Confidence            4555566677888888777554   2   2556667788888888999888888877542     22222221       


Q ss_pred             ------Hhc--CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---------
Q 010881          297 ------ANH--DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---------  359 (498)
Q Consensus       297 ------~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------  359 (498)
                            ...  .+.-.|-.+|++.   |                 .-+...+..|.++|.+.+|+++--+-         
T Consensus      1011 ~L~nlal~s~~~d~v~aArYyEe~---g-----------------~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen 1011 RLANLALMSGGSDLVSAARYYEEL---G-----------------GYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred             HHHHHHhhcCchhHHHHHHHHHHc---c-----------------hhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence                  111  2222333444432   1                 12233455677777777777652111         


Q ss_pred             --CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----------------------cCC------CC---chHHHH
Q 010881          360 --PI--EPDNYVLGALLNACRVHGDVDLGKETVESLVE----------------------RSL------DH---EGVHVL  404 (498)
Q Consensus       360 --~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------------------~~~------~~---~~~~~~  404 (498)
                        .+  ..|+...+.-..-++.+.++++|..++-.+.+                      +.|      +.   ......
T Consensus      1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence              22  23566666666666666677776665544331                      111      11   124567


Q ss_pred             HHHHhHhcCCcchHHHHHH
Q 010881          405 LSNIYASTEQWNGVEKVRR  423 (498)
Q Consensus       405 l~~~~~~~g~~~~a~~~~~  423 (498)
                      ++..|.++|.+..|.+-|-
T Consensus      1151 vae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred             HHHHHHhccchHHHHHHHh
Confidence            8889999998887766543

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.00  E-value=2.8e-08  Score=89.60  Aligned_cols=219  Identities=10%  Similarity=0.010  Sum_probs=125.3

Q ss_pred             HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-CChhHHHHHHHHHH
Q 010881          188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-LDIILGTAIIDMYA  266 (498)
Q Consensus       188 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~  266 (498)
                      ...+.+++...|+++.++   .+.... -.|.......+...+....+-+.+..-+......... .+..+.......+.
T Consensus        38 ~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~  113 (290)
T PF04733_consen   38 DFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILF  113 (290)
T ss_dssp             HHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHH
Confidence            334556666666655433   222222 2455555444444333323333333333222222212 12222223334455


Q ss_pred             hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh-
Q 010881          267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR-  345 (498)
Q Consensus       267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~-  345 (498)
                      ..|++++|++++...  .+.......+..|.+.++++.|.+.++.|.+..  .|             .+...++.++.. 
T Consensus       114 ~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-------------~~l~qLa~awv~l  176 (290)
T PF04733_consen  114 HEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-------------SILTQLAEAWVNL  176 (290)
T ss_dssp             CCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-------------HHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-------------HHHHHHHHHHHHH
Confidence            677788777777665  455666667777788888888888888876532  22             334444444332 


Q ss_pred             ---cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc-chHH
Q 010881          346 ---AGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW-NGVE  419 (498)
Q Consensus       346 ---~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~  419 (498)
                         .+.+.+|..+|+++  ...+++.+++.+..++...|++++|.+++.++++.+|.++.+...++.+....|+. +.+.
T Consensus       177 ~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~  256 (290)
T PF04733_consen  177 ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAE  256 (290)
T ss_dssp             HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHH
T ss_pred             HhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHH
Confidence               33578888888887  44567777788888888888888888888888888888887777777777777777 4466


Q ss_pred             HHHHhhhh
Q 010881          420 KVRRGMED  427 (498)
Q Consensus       420 ~~~~~m~~  427 (498)
                      +++.+++.
T Consensus       257 ~~l~qL~~  264 (290)
T PF04733_consen  257 RYLSQLKQ  264 (290)
T ss_dssp             HHHHHCHH
T ss_pred             HHHHHHHH
Confidence            67777664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.00  E-value=2.2e-06  Score=75.33  Aligned_cols=322  Identities=11%  Similarity=0.005  Sum_probs=203.1

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHH---HHHHHccCCcHHHHHHHHHHHHhCCCCchhH-HHHH
Q 010881           54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI---LRACADTSCLFVGLICHAQVIRLGWESYDFV-LNGL  129 (498)
Q Consensus        54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l  129 (498)
                      .-.--+...+...|++..|+.-|....+    .|+..|-++   ...|...|+-..|+.-+...++.  .||-.. ...-
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve----~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR  112 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVE----GDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR  112 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHc----CCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence            3344456667777788888888877766    233334333   34466777777777777777764  344322 1223


Q ss_pred             HHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHH
Q 010881          130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFN  209 (498)
Q Consensus       130 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  209 (498)
                      ...+.+.|.++.|..=|+...+.++.- +....++.+.--.++            .......+..+...|+...|+....
T Consensus       113 g~vllK~Gele~A~~DF~~vl~~~~s~-~~~~eaqskl~~~~e------------~~~l~~ql~s~~~~GD~~~ai~~i~  179 (504)
T KOG0624|consen  113 GVVLLKQGELEQAEADFDQVLQHEPSN-GLVLEAQSKLALIQE------------HWVLVQQLKSASGSGDCQNAIEMIT  179 (504)
T ss_pred             chhhhhcccHHHHHHHHHHHHhcCCCc-chhHHHHHHHHhHHH------------HHHHHHHHHHHhcCCchhhHHHHHH
Confidence            345666777777777666655332210 000000000000000            0112234455666788888888888


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChh
Q 010881          210 YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVF  287 (498)
Q Consensus       210 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~  287 (498)
                      .+++. .+.|...+..-..+|...|++..|+.-++.+.+.. .-++..+-.+-..+...|+.+.++...++..+  ||-.
T Consensus       180 ~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK  257 (504)
T KOG0624|consen  180 HLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHK  257 (504)
T ss_pred             HHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence            88774 24466666666777788888888877777766654 44555666666777788888888877777664  3221


Q ss_pred             ----HHHHH---------HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 010881          288 ----AYTSL---------ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK  354 (498)
Q Consensus       288 ----~~~~l---------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  354 (498)
                          .|-.|         +......+++.++++..+..++..  |..       .......+..+-.++...|++.+|++
T Consensus       258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e--p~~-------~~ir~~~~r~~c~C~~~d~~~~eAiq  328 (504)
T KOG0624|consen  258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE--PEE-------TMIRYNGFRVLCTCYREDEQFGEAIQ  328 (504)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--Ccc-------cceeeeeeheeeecccccCCHHHHHH
Confidence                12111         123455688888888888887753  321       11123445566677788899999999


Q ss_pred             HHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          355 VVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       355 ~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                      ...+. .+.|+ ..++.--..+|.-...++.|+.-|+.+.+.++++..+-..+
T Consensus       329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl  381 (504)
T KOG0624|consen  329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL  381 (504)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence            99888 77785 88888888999999999999999999999999887554433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.97  E-value=5.9e-08  Score=87.51  Aligned_cols=224  Identities=14%  Similarity=0.062  Sum_probs=140.7

Q ss_pred             HHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCC
Q 010881          157 WTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV-GALTACAFLGA  235 (498)
Q Consensus       157 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~  235 (498)
                      ...+.+++...|+.+.++.-...-..|.......+...+...++-+.++.-+++.......++..++. .....+...|+
T Consensus        38 ~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~  117 (290)
T PF04733_consen   38 DFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGD  117 (290)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCH
T ss_pred             HHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCC
Confidence            34455666666666655555444444555555444444433344455555554444333232222222 22234456678


Q ss_pred             hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHH
Q 010881          236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVFAYTSLISGLAN----HDQSASAIELFM  310 (498)
Q Consensus       236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~  310 (498)
                      +++|.+++...      .+.......+.+|.+.++++.|.+.++.|.+- +-.+...|..++..    ...+.+|..+|+
T Consensus       118 ~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~  191 (290)
T PF04733_consen  118 YEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFE  191 (290)
T ss_dssp             HHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             HHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            88877776432      35566677888888999999999998888753 22233334444332    346899999999


Q ss_pred             HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH-HHHHHH
Q 010881          311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDV-DLGKET  387 (498)
Q Consensus       311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~-~~A~~~  387 (498)
                      ++.+.             ..+++.+.+.+..++...|++++|.+++.+. ...| ++.++..++......|+. +.+.+.
T Consensus       192 El~~~-------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  192 ELSDK-------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             HHHCC-------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHhc-------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence            98663             3456888899999999999999999999887 4455 667777788887888877 678889


Q ss_pred             HHHHHhcCCCCc
Q 010881          388 VESLVERSLDHE  399 (498)
Q Consensus       388 ~~~~~~~~~~~~  399 (498)
                      +.++....|+++
T Consensus       259 l~qL~~~~p~h~  270 (290)
T PF04733_consen  259 LSQLKQSNPNHP  270 (290)
T ss_dssp             HHHCHHHTTTSH
T ss_pred             HHHHHHhCCCCh
Confidence            999998899876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.97  E-value=4.1e-07  Score=80.06  Aligned_cols=348  Identities=11%  Similarity=0.048  Sum_probs=177.7

Q ss_pred             CChhHHHHHhhhcCCC---CcchHHH-HHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHH
Q 010881           36 GDLSHGYRLFVCLQYR---TTFIWNT-MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICH  111 (498)
Q Consensus        36 g~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~  111 (498)
                      .|+..|+.+++.-..-   .....+. +...+.+.|++++|+..|..+.++. .|+...+..|.-++.-.|.+.+|.++.
T Consensus        36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~  114 (557)
T KOG3785|consen   36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIA  114 (557)
T ss_pred             ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHH
Confidence            6888888888754321   1122333 3345567899999999988887743 355555555655555667777776654


Q ss_pred             HHHH--------------HhC-----------CCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCC--hhhHHH-HHHH
Q 010881          112 AQVI--------------RLG-----------WESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRD--VISWTS-LING  163 (498)
Q Consensus       112 ~~~~--------------~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~-li~~  163 (498)
                      ...-              +.+           +.....-.-+|.+.....-.+.+|++++.+....+  -...|. +.-+
T Consensus       115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALC  194 (557)
T KOG3785|consen  115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALC  194 (557)
T ss_pred             hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHH
Confidence            3321              111           11111222344555555556788888887765432  222222 1223


Q ss_pred             HHccCCHHHHHHHHhhCCC-------------------------------------------------------------
Q 010881          164 YAKSGQISIARQMFDKMPE-------------------------------------------------------------  182 (498)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~-------------------------------------------------------------  182 (498)
                      |.+..-++-+.++++-...                                                             
T Consensus       195 yyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgAL  274 (557)
T KOG3785|consen  195 YYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGAL  274 (557)
T ss_pred             HHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHH
Confidence            3333333333333221110                                                             


Q ss_pred             ---C-----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----hccCChHHHHHHHHHHHHh
Q 010881          183 ---K-----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC-----AFLGALDQGRWIHAYVDRN  249 (498)
Q Consensus       183 ---~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~  249 (498)
                         |     -+.+--.|+--|.+.++..+|..+.+++.-  ..|-......+..+.     .+...+.-|.+.|..+-.+
T Consensus       275 qVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~S  352 (557)
T KOG3785|consen  275 QVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGES  352 (557)
T ss_pred             HhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccc
Confidence               0     011122233345566666666666655431  123222222222221     1112344455555555444


Q ss_pred             CCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881          250 GIELDI-ILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE  325 (498)
Q Consensus       250 ~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  325 (498)
                      +..-|+ .--.++..++.-..++++++-.+..+..   .|-..--.+.++++..|.+.+|.++|-++....++       
T Consensus       353 a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-------  425 (557)
T KOG3785|consen  353 ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-------  425 (557)
T ss_pred             ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-------
Confidence            433332 2223444444455566666666655543   22222223566777777777777777665332111       


Q ss_pred             hhCCCCChHHHH-HHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          326 IYGIEPGVQHYG-CLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALL-NACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       326 ~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                            |..+|. .|..+|.+.+.++-|+.++-++....+..++..+| .-|.+.+.+--|-+.|+.+..++|.+.
T Consensus       426 ------n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pE  495 (557)
T KOG3785|consen  426 ------NKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPE  495 (557)
T ss_pred             ------hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcc
Confidence                  234443 34566777777777777777764333444444444 356677777777777777777776653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.96  E-value=4.5e-06  Score=79.47  Aligned_cols=386  Identities=9%  Similarity=0.072  Sum_probs=226.9

Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHhhhcCCC---CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 010881           22 AVGKIIGFCSASDIGDLSHGYRLFVCLQYR---TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC   98 (498)
Q Consensus        22 ~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~   98 (498)
                      .+..++..|-.   +++....+..+.+.++   ...+.....-.+...|+-++|.+....-...++ -+...|+.+--.+
T Consensus        10 lF~~~lk~yE~---kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~   85 (700)
T KOG1156|consen   10 LFRRALKCYET---KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQ   85 (700)
T ss_pred             HHHHHHHHHHH---HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHH
Confidence            34444444433   3444444444443322   223333333345556888888888777666443 2566677777777


Q ss_pred             HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccCCHHHHHH
Q 010881           99 ADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSGQISIARQ  175 (498)
Q Consensus        99 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~  175 (498)
                      ....++++|.+.|..++..+. .|...+..+.-.-++.++++.....-.+..+   .....|..+..++--.|+...|..
T Consensus        86 R~dK~Y~eaiKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen   86 RSDKKYDEAIKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             hhhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            777888888888888888763 3666676666666667777766655544432   344667777777777888888888


Q ss_pred             HHhhCCC-----CChhHHHHH------HHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCChHHHHHHH
Q 010881          176 MFDKMPE-----KNAVSWSAM------INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV-GALTACAFLGALDQGRWIH  243 (498)
Q Consensus       176 ~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~~~  243 (498)
                      +++....     ++...|...      .....+.|.+++|++.+..-...  ..|...+. +-...+.+.+++++|..++
T Consensus       165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y  242 (700)
T KOG1156|consen  165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY  242 (700)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence            7766542     333333322      23445667777777766554322  22222222 2334456778888888888


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHH-HHHhhCCCC--ChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCC
Q 010881          244 AYVDRNGIELDIILGTAIIDMYAKCGCIETAC-SVFDSMPNR--DVFAYTSLISGLANHDQ-SASAIELFMRMQLEGVVP  319 (498)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~--~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p  319 (498)
                      ..+.... +-+...|--+..++.+-.+.-++. .+|....+.  ....-..+--......+ .+..-.++..+++.|+.+
T Consensus       243 ~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~  321 (700)
T KOG1156|consen  243 RRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS  321 (700)
T ss_pred             HHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc
Confidence            8887774 333444444555554333333333 555554431  00000000001111122 233445666667766432


Q ss_pred             CchhhhhhCCCCChHHHHHHHHHHhhcCCHHHH----HHHHHhC-C------------CCCCHHHHHH--HHHHHHhcCC
Q 010881          320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA----KKVVREM-P------------IEPDNYVLGA--LLNACRVHGD  380 (498)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~-~------------~~p~~~~~~~--l~~~~~~~g~  380 (498)
                                     ++..+...|-.....+-.    ..+...+ +            -.|....|..  ++..+-..|+
T Consensus       322 ---------------vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~  386 (700)
T KOG1156|consen  322 ---------------VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD  386 (700)
T ss_pred             ---------------hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence                           333344444332222211    1122222 1            1456555544  5667889999


Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       381 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      ++.|..+++.++...|.-+..|..-++++...|..++|...+++..+.+.
T Consensus       387 ~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~  436 (700)
T KOG1156|consen  387 YEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT  436 (700)
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence            99999999999999999988999999999999999999999999987665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.95  E-value=3.9e-06  Score=81.45  Aligned_cols=364  Identities=13%  Similarity=0.025  Sum_probs=229.8

Q ss_pred             HHhCCCchHHHH----HHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881           63 FAEKNEPIKAFA----LYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC  138 (498)
Q Consensus        63 ~~~~~~~~~A~~----~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  138 (498)
                      ++...+.+++.-    .+.++....+.-|...|..+.-+....|+++.+.+.|++....-+. ....|+.+...|..+|.
T Consensus       294 ~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~  372 (799)
T KOG4162|consen  294 LIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGS  372 (799)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhcc
Confidence            333444555543    3344444456668888888888888999999999999888765433 55678888888999999


Q ss_pred             hhhHHHHhhccCCCC--h---hhHHHHHHHHH-ccCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhC------
Q 010881          139 MDPARKLFDMSVNRD--V---ISWTSLINGYA-KSGQISIARQMFDKMPE--------KNAVSWSAMINGYVQV------  198 (498)
Q Consensus       139 ~~~a~~~~~~~~~~~--~---~~~~~li~~~~-~~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~------  198 (498)
                      -..|..+++....+.  +   ..+-..-..|. +.+.+++++++-.+...        .....|-.+.-+|...      
T Consensus       373 ~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~  452 (799)
T KOG4162|consen  373 DSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANL  452 (799)
T ss_pred             chHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCC
Confidence            889999988754332  2   22222222232 33555555444433321        1344555555555432      


Q ss_pred             -----CCHhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010881          199 -----DLFKEALEHFNYMQLCG-FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE  272 (498)
Q Consensus       199 -----g~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  272 (498)
                           ....++++.+++..+.+ -.|+...|..+  -|+..++++.|.+..++..+.+-..+...|..|.-.+...+++.
T Consensus       453 ~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~  530 (799)
T KOG4162|consen  453 KSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLK  530 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhH
Confidence                 12356778888887654 33433333333  35677899999999999998865778888988888888899999


Q ss_pred             HHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHH---------------------cC--C---CCCc--
Q 010881          273 TACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQL---------------------EG--V---VPNE--  321 (498)
Q Consensus       273 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---------------------~~--~---~p~~--  321 (498)
                      +|+.+.+...+.   |......-+..-...++.++++.....++.                     .|  .   .|.+  
T Consensus       531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~  610 (799)
T KOG4162|consen  531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI  610 (799)
T ss_pred             HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence            999988765431   110000000011112222222222111110                     00  0   1111  


Q ss_pred             --------------------hhhhhhCCCCC--------hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 010881          322 --------------------SMSEIYGIEPG--------VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGAL  371 (498)
Q Consensus       322 --------------------~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l  371 (498)
                                          .........|.        ...|....+.+.+.+..++|...+.+. ++.| .+..|...
T Consensus       611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~  690 (799)
T KOG4162|consen  611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLR  690 (799)
T ss_pred             hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHh
Confidence                                00111112221        234556677888999999999888888 5555 67777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHH--HHHhhhhCC
Q 010881          372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK--VRRGMEDNE  429 (498)
Q Consensus       372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~--~~~~m~~~~  429 (498)
                      ...+...|...+|.+.|..++.++|+++.....++.++.+.|+-.-|..  ++..+.+.+
T Consensus       691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d  750 (799)
T KOG4162|consen  691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD  750 (799)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence            7888899999999999999999999999999999999999998777766  777766543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=6.8e-06  Score=81.98  Aligned_cols=237  Identities=13%  Similarity=0.086  Sum_probs=123.3

Q ss_pred             CChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 010881          137 NCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF  216 (498)
Q Consensus       137 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  216 (498)
                      +.+|.|.++-++..+  +..|..+..+-.+.|.+.+|++-|-+..  |+..|.-++....+.|.|++-.+++.-.++..-
T Consensus      1089 ~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred             hhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence            334444444433322  3346666666666666666666554443  334555666666666666666666655555444


Q ss_pred             CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHH
Q 010881          217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGL  296 (498)
Q Consensus       217 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~  296 (498)
                      .|...  +.++-+|++.+++.+.+.++       ..||..-...+.+-|...|.++.|.-+|..     +.-|..|...+
T Consensus      1165 E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTL 1230 (1666)
T ss_pred             Cccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHH
Confidence            44433  24455555555554433332       234555555555555555555555555543     34455566666


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010881          297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACR  376 (498)
Q Consensus       297 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~  376 (498)
                      ...|++..|...-++..                  +..||-.+-.+|...+.+.-|.-.  -+.+-....-+.-++..|.
T Consensus      1231 V~LgeyQ~AVD~aRKAn------------------s~ktWK~VcfaCvd~~EFrlAQiC--GL~iivhadeLeeli~~Yq 1290 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKAN------------------STKTWKEVCFACVDKEEFRLAQIC--GLNIIVHADELEELIEYYQ 1290 (1666)
T ss_pred             HHHHHHHHHHHHhhhcc------------------chhHHHHHHHHHhchhhhhHHHhc--CceEEEehHhHHHHHHHHH
Confidence            66666666655444432                  245555555555544444322110  0012223444555666666


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      ..|-+++-+.+++..+.+..-+-..|..|+..|++
T Consensus      1291 ~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsk 1325 (1666)
T KOG0985|consen 1291 DRGYFEELISLLEAGLGLERAHMGMFTELAILYSK 1325 (1666)
T ss_pred             hcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHh
Confidence            66666666666666665555555555555555544

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=8.9e-06  Score=71.88  Aligned_cols=364  Identities=11%  Similarity=0.025  Sum_probs=203.1

Q ss_pred             HHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881           60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM  139 (498)
Q Consensus        60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  139 (498)
                      +.-+...+|+..|+.+++.-...+-.-...+-..+..++.+.|++++|...+..+.... .++...+-.|.-++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            45566788999999999887654333222333345566789999999999999988754 45666666677777778889


Q ss_pred             hhHHHHhhccCCC---------------ChhhHH--------------HHHHHHHccCCHHHHHHHHhhCCCC--ChhHH
Q 010881          140 DPARKLFDMSVNR---------------DVISWT--------------SLINGYAKSGQISIARQMFDKMPEK--NAVSW  188 (498)
Q Consensus       140 ~~a~~~~~~~~~~---------------~~~~~~--------------~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~  188 (498)
                      .+|..+-....+.               |..-+.              +|....-..-.+.+|++++..+...  +-...
T Consensus       108 ~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~al  187 (557)
T KOG3785|consen  108 IEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIAL  187 (557)
T ss_pred             HHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhh
Confidence            9998887654321               111111              1111222223466777777776543  33333


Q ss_pred             HH-HHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhc--cCChHHHH------------HHHHHHHHhCC-
Q 010881          189 SA-MINGYVQVDLFKEALEHFNYMQLCGFRPNHAG-IVGALTACAF--LGALDQGR------------WIHAYVDRNGI-  251 (498)
Q Consensus       189 ~~-li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~--~~~~~~a~------------~~~~~~~~~~~-  251 (498)
                      |. +.-+|.+..-++-+.++++--++.  .||+.. .+.......+  .|+..+.+            ...+.+.++++ 
T Consensus       188 NVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLV  265 (557)
T KOG3785|consen  188 NVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLV  265 (557)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeE
Confidence            43 334566777777777777766654  344332 2222222111  12211110            01111222110 


Q ss_pred             -----------CC-----ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc-------CChHHHHHH
Q 010881          252 -----------EL-----DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH-------DQSASAIEL  308 (498)
Q Consensus       252 -----------~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-------~~~~~a~~~  308 (498)
                                 -|     -+..--.|+-.|.+.+++.+|..+.+.+...++.-|-.-.-.++..       ....-|.+.
T Consensus       266 vFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqf  345 (557)
T KOG3785|consen  266 VFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQF  345 (557)
T ss_pred             EEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHH
Confidence                       01     1122333455667888888888888877654433222211122222       234455566


Q ss_pred             HHHHHHcCCCCCc------------------------hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-
Q 010881          309 FMRMQLEGVVPNE------------------------SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-  362 (498)
Q Consensus       309 ~~~m~~~~~~p~~------------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-  362 (498)
                      |.-.-+.+...|.                        .-.+.+ +..|...-..+.++++..|.+.+|+++|-++ +.+ 
T Consensus       346 fqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~i  424 (557)
T KOG3785|consen  346 FQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEI  424 (557)
T ss_pred             HHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhh
Confidence            6554444443332                        001111 1112222234677888889999999999888 322 


Q ss_pred             CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcC-CCCc-hHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          363 PDNYVLGAL-LNACRVHGDVDLGKETVESLVERS-LDHE-GVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       363 p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      .|..+|.++ .++|.++++++.|.+++   ++.+ |.+. .....+++-|.+.+.+=-|.+.|+.+...+.
T Consensus       425 kn~~~Y~s~LArCyi~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  425 KNKILYKSMLARCYIRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP  492 (557)
T ss_pred             hhhHHHHHHHHHHHHhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence            356666554 45778888888776655   3333 3332 2344667788888888888888887766554

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.91  E-value=8.2e-07  Score=86.15  Aligned_cols=263  Identities=10%  Similarity=0.028  Sum_probs=170.2

Q ss_pred             HHHHccCCHHHHHHHHhhCCCC--C-hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh----c--
Q 010881          162 NGYAKSGQISIARQMFDKMPEK--N-AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA----F--  232 (498)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~--  232 (498)
                      ..+...|++++|++.+++-...  | ..........+.+.|+.++|..+|..+.+.  .|+...|...+..+.    .  
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence            3445667777777777665432  3 344556677788888888888888888876  466666655555444    1  


Q ss_pred             cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH-HHHHHHhhCCCCCh-hHHHHHHHHHHhcCChHHHHHHHH
Q 010881          233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE-TACSVFDSMPNRDV-FAYTSLISGLANHDQSASAIELFM  310 (498)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~  310 (498)
                      ..+.+....+++.+...-  |.......+.-.+.....+. .+...+..+..+.+ .+|+.|-..|....+..-...++.
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~  167 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE  167 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence            124566677777665543  33322222222222222232 23334444444444 455555555555555555555555


Q ss_pred             HHHHc----CCCCCchhhhhhCCCCCh--HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 010881          311 RMQLE----GVVPNESMSEIYGIEPGV--QHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVD  382 (498)
Q Consensus       311 ~m~~~----~~~p~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~  382 (498)
                      .....    +-.+...  ..-.-.|+.  .++..+...|-..|++++|++++++. ...|+ +..|..-...+...|+++
T Consensus       168 ~~~~~l~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~  245 (517)
T PF12569_consen  168 EYVNSLESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK  245 (517)
T ss_pred             HHHHhhcccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence            55432    1111100  000123444  34567788899999999999999988 55674 778888888999999999


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       383 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      +|.+.++.+.++++.+-..-.-.+..+.+.|+.++|.+++..+-..+.
T Consensus       246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            999999999999999987777889999999999999999988876664

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.90  E-value=4.1e-06  Score=72.22  Aligned_cols=284  Identities=12%  Similarity=0.054  Sum_probs=140.3

Q ss_pred             HHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 010881           58 TMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC  136 (498)
Q Consensus        58 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  136 (498)
                      +.+..+.+..+++.|++++..-.+..  | +....+.|..+|....++..|...++++-...++....-+ --...+.+.
T Consensus        15 aviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl-Y~AQSLY~A   91 (459)
T KOG4340|consen   15 AVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL-YQAQSLYKA   91 (459)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH-HHHHHHHHh
Confidence            33334444444444444444443321  2 3333444444444444444454444444443222111111 011223334


Q ss_pred             CChhhHHHHhhccCCC-ChhhHHHHHH--HHHccCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881          137 NCMDPARKLFDMSVNR-DVISWTSLIN--GYAKSGQISIARQMFDKMPE-KNAVSWSAMINGYVQVDLFKEALEHFNYMQ  212 (498)
Q Consensus       137 g~~~~a~~~~~~~~~~-~~~~~~~li~--~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  212 (498)
                      +.+.+|.++...|... +...-..-+.  ..-..+|+..+..+.++.+. .+..+.+.......+.|+++.|.+-|+...
T Consensus        92 ~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAl  171 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAAL  171 (459)
T ss_pred             cccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHH
Confidence            4444444444444332 1111111111  11234455555555555542 333444444444445555555555555555


Q ss_pred             HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-------------CC---------------hhHHHHHHHH
Q 010881          213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-------------LD---------------IILGTAIIDM  264 (498)
Q Consensus       213 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~---------------~~~~~~l~~~  264 (498)
                      +-+---....|+..+. ..+.++.+.|.+...++.++|+.             ||               +..+|.-...
T Consensus       172 qvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAI  250 (459)
T KOG4340|consen  172 QVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAI  250 (459)
T ss_pred             hhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhh
Confidence            4332222334443332 23345555555555555554431             11               1223333344


Q ss_pred             HHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881          265 YAKCGCIETACSVFDSMPNR-----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL  339 (498)
Q Consensus       265 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l  339 (498)
                      +.+.|+++.|.+.+..|+.+     |++|...+.-.- ..+++.+..+-+.-++..+..             ..+||..+
T Consensus       251 eyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-------------P~ETFANl  316 (459)
T KOG4340|consen  251 EYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-------------PPETFANL  316 (459)
T ss_pred             hhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-------------ChHHHHHH
Confidence            56789999999999999853     677766553221 234555556556556554333             35899999


Q ss_pred             HHHHhhcCCHHHHHHHHHhC
Q 010881          340 VDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       340 ~~~~~~~g~~~~A~~~~~~~  359 (498)
                      +-.||+..-++.|-.++-+-
T Consensus       317 LllyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  317 LLLYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             HHHHhhhHHHhHHHHHHhhC
Confidence            99999999999999988764

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.87  E-value=2.6e-06  Score=82.04  Aligned_cols=165  Identities=16%  Similarity=0.172  Sum_probs=96.3

Q ss_pred             HHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010881          194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET  273 (498)
Q Consensus       194 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  273 (498)
                      +......|.+|+.+++.++....  -..-|..+...|+..|+++.|.++|-+.         ..++-.|.+|.+.|+++.
T Consensus       741 aai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~d  809 (1636)
T KOG3616|consen  741 AAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWED  809 (1636)
T ss_pred             HHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHH
Confidence            34455667777777776665432  2234556667777777777777776432         244556777778888888


Q ss_pred             HHHHHhhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHH
Q 010881          274 ACSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA  351 (498)
Q Consensus       274 A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  351 (498)
                      |.++-.+...|  .+..|-+-..-+-.+|++.+|.++|-.+..    |+                 ..|.+|-+.|..+.
T Consensus       810 a~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----------------~aiqmydk~~~~dd  868 (1636)
T KOG3616|consen  810 AFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----------------KAIQMYDKHGLDDD  868 (1636)
T ss_pred             HHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----------------HHHHHHHhhCcchH
Confidence            77777766654  334555555556667777777766644311    22                 13555666666666


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010881          352 AKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVES  390 (498)
Q Consensus       352 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  390 (498)
                      .+++..+..-..-..|...+..-+...|++..|+..|-+
T Consensus       869 mirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  869 MIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             HHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence            666655541112233444555556666666666655543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.87  E-value=1.7e-07  Score=79.81  Aligned_cols=148  Identities=9%  Similarity=0.098  Sum_probs=115.2

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH
Q 010881          262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD  341 (498)
Q Consensus       262 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~  341 (498)
                      +-.|...|+++.+....+.+..+.        ..+...++.+++...++...+.  .|+           +...|..+..
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~-----------~~~~w~~Lg~   81 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRA--NPQ-----------NSEQWALLGE   81 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHH
Confidence            446777888777655544332221        0122356677787778777764  344           6899999999


Q ss_pred             HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcc
Q 010881          342 LLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNAC-RVHGD--VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN  416 (498)
Q Consensus       342 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  416 (498)
                      .|...|++++|...|++. .+.| +...+..+..++ ...|+  .++|.++++++++.+|+++.++..++..+.+.|+++
T Consensus        82 ~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~  161 (198)
T PRK10370         82 YYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA  161 (198)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Confidence            999999999999999998 5566 677777777764 67777  599999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhhCCc
Q 010881          417 GVEKVRRGMEDNEV  430 (498)
Q Consensus       417 ~a~~~~~~m~~~~~  430 (498)
                      +|+..|+++.+...
T Consensus       162 ~Ai~~~~~aL~l~~  175 (198)
T PRK10370        162 QAIELWQKVLDLNS  175 (198)
T ss_pred             HHHHHHHHHHhhCC
Confidence            99999999987554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.82  E-value=1.4e-07  Score=76.02  Aligned_cols=120  Identities=9%  Similarity=-0.014  Sum_probs=85.6

Q ss_pred             HhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 010881          278 FDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR  357 (498)
Q Consensus       278 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  357 (498)
                      |++..+-++..+..+...+...|++++|...|+.....  .|+           +...|..+..++...|++++|...|+
T Consensus        16 ~~~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~a~~~lg~~~~~~g~~~~A~~~y~   82 (144)
T PRK15359         16 LKQLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMA--QPW-----------SWRAHIALAGTWMMLKEYTTAINFYG   82 (144)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            33333334444555666777788888888888887663  333           57778888888888888888888888


Q ss_pred             hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881          358 EM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA  410 (498)
Q Consensus       358 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  410 (498)
                      +. ...| +...+..+..++...|++++|+..|+++++..|+++..+...+.+..
T Consensus        83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~  137 (144)
T PRK15359         83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI  137 (144)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            77 4445 67777778888888888888888888888888888777766655443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.80  E-value=4.7e-05  Score=81.94  Aligned_cols=404  Identities=11%  Similarity=-0.066  Sum_probs=233.5

Q ss_pred             HhHHHHHHHHhCCC--C-C----hhHHHHHHHHhhcCCC--CChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHH
Q 010881            4 IKQIQSHLTVSGTL--W-D----PFAVGKIIGFCSASDI--GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFA   74 (498)
Q Consensus         4 ~~~~~~~~~~~g~~--~-~----~~~~~~l~~~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~   74 (498)
                      +.++.+.+.+.|+-  + +    -+.++.|+.-+.+...  .+.+....+           +......+...|++.+|..
T Consensus       294 ~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l-----------h~raa~~~~~~g~~~~Al~  362 (903)
T PRK04841        294 GQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL-----------HRAAAEAWLAQGFPSEAIH  362 (903)
T ss_pred             HHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH-----------HHHHHHHHHHCCCHHHHHH
Confidence            45677777777751  1 1    2446666665554300  122222222           2333445556667666665


Q ss_pred             HHHHhHHCCCCCC-cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC---
Q 010881           75 LYKQMLRSDFLPN-NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV---  150 (498)
Q Consensus        75 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---  150 (498)
                      .......   .+. ..............|+++.+..+++.+-......+..........+...|+++++...++...   
T Consensus       363 ~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~  439 (903)
T PRK04841        363 HALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQEL  439 (903)
T ss_pred             HHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence            4433311   100 001111222344556776666666554221111222233344455566788888777775432   


Q ss_pred             -CCC---h-----hhHHHHHHHHHccCCHHHHHHHHhhCCC----CC----hhHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881          151 -NRD---V-----ISWTSLINGYAKSGQISIARQMFDKMPE----KN----AVSWSAMINGYVQVDLFKEALEHFNYMQL  213 (498)
Q Consensus       151 -~~~---~-----~~~~~li~~~~~~~~~~~A~~~~~~~~~----~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  213 (498)
                       ..+   .     .....+...+...|+++.|...++....    .+    ....+.+...+...|++++|...+.+...
T Consensus       440 ~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~  519 (903)
T PRK04841        440 KDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQ  519 (903)
T ss_pred             cccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             111   1     1112223345578888888888776532    12    12345566677889999999999888764


Q ss_pred             cCC---CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881          214 CGF---RP--NHAGIVGALTACAFLGALDQGRWIHAYVDRN----GIEL---DIILGTAIIDMYAKCGCIETACSVFDSM  281 (498)
Q Consensus       214 ~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~  281 (498)
                      ..-   .+  ...++..+...+...|+++.|...+++....    +...   ....+..+...+...|++++|...+...
T Consensus       520 ~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a  599 (903)
T PRK04841        520 MARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG  599 (903)
T ss_pred             HHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            311   11  1234445566677889999999888776542    2111   1233445566777789999999888876


Q ss_pred             CC------C--ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh-H-HHHHHHHHHhhcCCHHH
Q 010881          282 PN------R--DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-Q-HYGCLVDLLGRAGMLEA  351 (498)
Q Consensus       282 ~~------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~-~-~~~~l~~~~~~~g~~~~  351 (498)
                      ..      +  ....+..+...+...|+.++|...+.+........        +..... . .-...+..+...|+.+.
T Consensus       600 l~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~  671 (903)
T PRK04841        600 LEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--------RYHSDWIANADKVRLIYWQMTGDKEA  671 (903)
T ss_pred             HHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc--------cccHhHhhHHHHHHHHHHHHCCCHHH
Confidence            43      1  12344456667888999999999998886531000        000000 0 01112344556899999


Q ss_pred             HHHHHHhC-CCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCchHHHHHHHHhHhcCCcchHH
Q 010881          352 AKKVVREM-PIE-PDN----YVLGALLNACRVHGDVDLGKETVESLVERSL------DHEGVHVLLSNIYASTEQWNGVE  419 (498)
Q Consensus       352 A~~~~~~~-~~~-p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~  419 (498)
                      |...+... ... ...    ..+..+..++...|++++|...++++.....      ....+...++.++.+.|+.++|.
T Consensus       672 A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~  751 (903)
T PRK04841        672 AANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQ  751 (903)
T ss_pred             HHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99998876 211 111    1134566778899999999999999887421      12235667888999999999999


Q ss_pred             HHHHhhhhCC
Q 010881          420 KVRRGMEDNE  429 (498)
Q Consensus       420 ~~~~~m~~~~  429 (498)
                      ..+.+..+..
T Consensus       752 ~~L~~Al~la  761 (903)
T PRK04841        752 RVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHh
Confidence            9999998654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.79  E-value=1.8e-05  Score=75.16  Aligned_cols=193  Identities=10%  Similarity=-0.011  Sum_probs=111.6

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----Ch--hHHHHHHHHHH
Q 010881          225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-----DV--FAYTSLISGLA  297 (498)
Q Consensus       225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~  297 (498)
                      .+...+...|++++|...++...+.. +.+...+..+..+|...|++++|...+++....     +.  ..|..+...+.
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            34445556666666666666666654 444556666777777777777777777765531     11  23445666777


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH-H--HHHHHHhhcCCHHHHHHH---HHhC-C---CCCCHHH
Q 010881          298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY-G--CLVDLLGRAGMLEAAKKV---VREM-P---IEPDNYV  367 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~---~~p~~~~  367 (498)
                      ..|++++|..++++.......+.           ..... +  .++.-+...|..+.+.+.   .... +   .......
T Consensus       198 ~~G~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~  266 (355)
T cd05804         198 ERGDYEAALAIYDTHIAPSAESD-----------PALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFN  266 (355)
T ss_pred             HCCCHHHHHHHHHHHhccccCCC-----------hHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHH
Confidence            78888888888877643211001           11111 1  222223333322222221   1111 1   1111222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          368 LGALLNACRVHGDVDLGKETVESLVERSLD---------HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ......++...|+.+.|...++.+....-.         ........+.++...|++++|.+.+......+
T Consensus       267 ~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         267 DLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            234666778899999999999988763311         23344566677889999999999998887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.76  E-value=2.9e-05  Score=77.64  Aligned_cols=202  Identities=14%  Similarity=0.149  Sum_probs=152.6

Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      .+..|..+..+-.+.|...+|++-|-+.      -|...|.-++..+.+.|.+++-.+++....+..-.|..  -+.|+-
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIF 1174 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHH
Confidence            3467888888888888888888877543      35567889999999999999999999888877655544  467889


Q ss_pred             HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881          264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL  343 (498)
Q Consensus       264 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~  343 (498)
                      +|++.+++.+.++++   ..||..-...+..-|...+.++.|.-+|..                     +..|..|...+
T Consensus      1175 AyAkt~rl~elE~fi---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------------------vSN~a~La~TL 1230 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFI---AGPNVANIQQVGDRCFEEKMYEAAKLLYSN---------------------VSNFAKLASTL 1230 (1666)
T ss_pred             HHHHhchHHHHHHHh---cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------------------hhhHHHHHHHH
Confidence            999999988877664   357777788888889999999888877765                     45688899999


Q ss_pred             hhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCchHHHHHHHHhHhcCCcchHHHHH
Q 010881          344 GRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS-LDHEGVHVLLSNIYASTEQWNGVEKVR  422 (498)
Q Consensus       344 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~  422 (498)
                      ...|++..|.+.-++.   .+..+|..+-.+|...+.+.-|.     +..++ .-+..-...++..|-..|-++|.+.++
T Consensus      1231 V~LgeyQ~AVD~aRKA---ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~ 1302 (1666)
T KOG0985|consen 1231 VYLGEYQGAVDAARKA---NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYFEELISLL 1302 (1666)
T ss_pred             HHHHHHHHHHHHhhhc---cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHH
Confidence            9999999999888775   35778988888898777665442     33322 112333556777777777777777766


Q ss_pred             Hhh
Q 010881          423 RGM  425 (498)
Q Consensus       423 ~~m  425 (498)
                      +..
T Consensus      1303 Ea~ 1305 (1666)
T KOG0985|consen 1303 EAG 1305 (1666)
T ss_pred             Hhh
Confidence            544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.76  E-value=4.4e-05  Score=72.50  Aligned_cols=194  Identities=11%  Similarity=-0.051  Sum_probs=86.6

Q ss_pred             HHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhccC
Q 010881          161 INGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNH--AGIVGALTACAFLG  234 (498)
Q Consensus       161 i~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~  234 (498)
                      ...+...|++++|...+++..+  | +...+..+...+...|++++|...+++...... .|+.  ..+..+...+...|
T Consensus       121 a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G  200 (355)
T cd05804         121 AFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERG  200 (355)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCC
Confidence            3445555555555555555442  1 334455555555666666666666655554321 1121  12334445555566


Q ss_pred             ChHHHHHHHHHHHHhCC-CCChhHH-H--HHHHHHHhcCC------HHHHHHHHhhCCCCChhHHH--HHHHHHHhcCCh
Q 010881          235 ALDQGRWIHAYVDRNGI-ELDIILG-T--AIIDMYAKCGC------IETACSVFDSMPNRDVFAYT--SLISGLANHDQS  302 (498)
Q Consensus       235 ~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~~~--~li~~~~~~~~~  302 (498)
                      ++++|..+++....... .+..... +  .++.-+...|.      ++.+..............+.  ....++...|+.
T Consensus       201 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  280 (355)
T cd05804         201 DYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDK  280 (355)
T ss_pred             CHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCH
Confidence            66666666655532211 0111111 1  11222222222      11111111111011112222  355567778889


Q ss_pred             HHHHHHHHHHHHcCCCCCchhhhhhCC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          303 ASAIELFMRMQLEGVVPNESMSEIYGI-EPGVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                      ++|..++..+......++.     .+. ...........-++...|+.++|.+.+...
T Consensus       281 ~~a~~~L~~l~~~~~~~~~-----~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~a  333 (355)
T cd05804         281 DALDKLLAALKGRASSADD-----NKQPARDVGLPLAEALYAFAEGNYATALELLGPV  333 (355)
T ss_pred             HHHHHHHHHHHHHHhccCc-----hhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999888664211000     000 001222223333445677777777776643

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.71  E-value=3.8e-06  Score=83.69  Aligned_cols=388  Identities=10%  Similarity=-0.032  Sum_probs=217.6

Q ss_pred             HHHHHHHhCCCCCh-hHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC
Q 010881            7 IQSHLTVSGTLWDP-FAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS   82 (498)
Q Consensus         7 ~~~~~~~~g~~~~~-~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~   82 (498)
                      ++..+....+.|+. ..|..|-..|+..  .+...|.+.|++..+   .+..++......|++..+++.|..+.-..-+.
T Consensus       478 l~ali~alrld~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk  555 (1238)
T KOG1127|consen  478 LHALIRALRLDVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK  555 (1238)
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh
Confidence            33344444444443 5677777777777  677777777776543   35667777777788888888777773322221


Q ss_pred             CCCCCcch--HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHH--
Q 010881           83 DFLPNNYT--FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWT--  158 (498)
Q Consensus        83 ~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--  158 (498)
                      . +.-...  |..+--.|.+.++...+..-|+...+..|. |...|..+..+|..+|.+..|.++|.+....++.++.  
T Consensus       556 a-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~  633 (1238)
T KOG1127|consen  556 A-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGR  633 (1238)
T ss_pred             c-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHH
Confidence            1 001111  222222355667777777777777776533 6667777788888888888888888665543333221  


Q ss_pred             -HHHHHHHccCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHH-------cCCCCCH
Q 010881          159 -SLINGYAKSGQISIARQMFDKMPEK----------NAVSWSAMINGYVQVDLFKEALEHFNYMQL-------CGFRPNH  220 (498)
Q Consensus       159 -~li~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-------~g~~p~~  220 (498)
                       ...-..+..|.+.+|...+..+...          -..++-.+...+...|-..+|..++++-.+       .....+.
T Consensus       634 fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~  713 (1238)
T KOG1127|consen  634 FKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDR  713 (1238)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhH
Confidence             1222345567777777776655421          112222222223333333333333333222       1111111


Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH---H---HHHHHHhhCC--CCChhHHHHH
Q 010881          221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI---E---TACSVFDSMP--NRDVFAYTSL  292 (498)
Q Consensus       221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~---~A~~~~~~~~--~~~~~~~~~l  292 (498)
                      ..+..+-          .|..+|.... .+ .|+......|..-.-..+..   +   -+.+.+-.-.  ..+..+|..|
T Consensus       714 ~~Wi~as----------dac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNL  781 (1238)
T KOG1127|consen  714 LQWIVAS----------DACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNL  781 (1238)
T ss_pred             HHHHHHh----------HHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHH
Confidence            1111111          1222222222 11 22222222222211122211   1   1111111101  1245677777


Q ss_pred             HHHHHh----c----CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCC
Q 010881          293 ISGLAN----H----DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIE  362 (498)
Q Consensus       293 i~~~~~----~----~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~  362 (498)
                      +..|.+    .    .+...|...+.+..+.  ..|           +..+|+.|.-. ...|.+.-|...|-+-  ..+
T Consensus       782 Ginylr~f~~l~et~~~~~~Ai~c~KkaV~L--~an-----------n~~~WnaLGVl-sg~gnva~aQHCfIks~~sep  847 (1238)
T KOG1127|consen  782 GINYLRYFLLLGETMKDACTAIRCCKKAVSL--CAN-----------NEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP  847 (1238)
T ss_pred             hHHHHHHHHHcCCcchhHHHHHHHHHHHHHH--hhc-----------cHHHHHHHHHh-hccchhhhhhhhhhhhhhccc
Confidence            666554    1    2234677777776653  112           46667766555 6668888888887665  333


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHh
Q 010881          363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRG  424 (498)
Q Consensus       363 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  424 (498)
                      .+..+|..+...|....+++.|...|.....+.|.+...+...+.+....|+.-+...+|..
T Consensus       848 ~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  848 TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             cchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            47889999999999999999999999999999999998888888888888988888888766

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.71  E-value=3.5e-07  Score=73.67  Aligned_cols=95  Identities=6%  Similarity=-0.192  Sum_probs=87.1

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881          335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++.+|+++.++..++.++...
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            4666788899999999999999998 5566 7888999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHhhhhCC
Q 010881          413 EQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       413 g~~~~a~~~~~~m~~~~  429 (498)
                      |++++|+..+++..+..
T Consensus       106 g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        106 GEPGLAREAFQTAIKMS  122 (144)
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999987654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.71  E-value=6.9e-07  Score=79.28  Aligned_cols=166  Identities=15%  Similarity=-0.006  Sum_probs=123.8

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC-h---hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881          253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD-V---FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI  326 (498)
Q Consensus       253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  326 (498)
                      .....+..+...+...|+++.|...|+++..  |+ .   .++..+..++...|++++|...++++.+.  .|+.     
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~-----  103 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNH-----  103 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCC-----
Confidence            3455667777788889999999998887764  32 2   36677888899999999999999999874  3431     


Q ss_pred             hCCCCChHHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcC
Q 010881          327 YGIEPGVQHYGCLVDLLGRA--------GMLEAAKKVVREM-PIEPDN-YVL-----------------GALLNACRVHG  379 (498)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~g  379 (498)
                         .....++..+..++...        |+.++|.+.++++ ...|+. ..+                 ..+...+...|
T Consensus       104 ---~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g  180 (235)
T TIGR03302       104 ---PDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRG  180 (235)
T ss_pred             ---CchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence               00122455556666554        7899999999988 434532 222                 13455678889


Q ss_pred             CHHHHHHHHHHHHhcCCCC---chHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          380 DVDLGKETVESLVERSLDH---EGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       380 ~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ++++|...++.+++..|+.   +..+..++.++...|++++|..+++.+..+
T Consensus       181 ~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       181 AYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             ChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999999999999987764   467889999999999999999999888654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.68  E-value=2.7e-06  Score=85.86  Aligned_cols=139  Identities=6%  Similarity=0.005  Sum_probs=91.4

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC
Q 010881          252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG  328 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~  328 (498)
                      +.++..+-.|..+..+.|++++|..+++.+.+  | +......+...+.+.+++++|+..+++....  .|+        
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~--------  152 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSS--------  152 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCC--------
Confidence            44566666777777777777777777776654  3 3445666666777777777777777777663  344        


Q ss_pred             CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881          329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV  403 (498)
Q Consensus       329 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  403 (498)
                         +......+..++...|++++|..+|+++ .-.| +..++..+..++...|+.++|...|+++++...+-...|.
T Consensus       153 ---~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~  226 (694)
T PRK15179        153 ---SAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLT  226 (694)
T ss_pred             ---CHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHH
Confidence               4666667777777777777777777776 2233 3666677777777777777777777777765533333333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=1.4e-05  Score=68.96  Aligned_cols=390  Identities=14%  Similarity=0.036  Sum_probs=237.1

Q ss_pred             CCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchH
Q 010881           15 GTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTF   91 (498)
Q Consensus        15 g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~   91 (498)
                      |+.....-+.+.+....+.  .++++|.+++..-.+   ++....+.|...|-...++..|-..|+++-.  ..|...-|
T Consensus         5 g~~i~EGeftaviy~lI~d--~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qY   80 (459)
T KOG4340|consen    5 GAQIPEGEFTAVVYRLIRD--ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQY   80 (459)
T ss_pred             cccCCCCchHHHHHHHHHH--hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHH
Confidence            3333333345555555666  789999999876543   3666788888889999999999999999977  55766666


Q ss_pred             HHH-HHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhCCChhhHHHHhhccC-CCChhhHHHHHHHHHcc
Q 010881           92 SFI-LRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL--HLYATCNCMDPARKLFDMSV-NRDVISWTSLINGYAKS  167 (498)
Q Consensus        92 ~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~li~~~~~~  167 (498)
                      ... ...+.+.+.+..|+++...|...   ++...-..-+  ......+++..+..++++.. +.+..+.+.......+.
T Consensus        81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyke  157 (459)
T KOG4340|consen   81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKE  157 (459)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeecc
Confidence            543 35567788899999998887642   2221111112  22345688889999999988 46777777777778899


Q ss_pred             CCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-------------CCHH--------H
Q 010881          168 GQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFR-------------PNHA--------G  222 (498)
Q Consensus       168 ~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-------------p~~~--------~  222 (498)
                      |+.+.|.+-|+...+-    ....||.-+ +..+.|++..|++...++.++|++             ||..        .
T Consensus       158 gqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh  236 (459)
T KOG4340|consen  158 GQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH  236 (459)
T ss_pred             ccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence            9999999999988753    455666544 566789999999999999887653             1211        1


Q ss_pred             HHHHHHH-------HhccCChHHHHHHHHHHHHh-CCCCChhHHHH--HHHHHHhcCCHHHHHHHHhhCCCCChhHHHHH
Q 010881          223 IVGALTA-------CAFLGALDQGRWIHAYVDRN-GIELDIILGTA--IIDMYAKCGCIETACSVFDSMPNRDVFAYTSL  292 (498)
Q Consensus       223 ~~~ll~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l  292 (498)
                      -+.++.+       +.+.++.+.|.+.+-.|.-+ ....|+.|...  +.++=.+-++--.-++++-.+..-...||..+
T Consensus       237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~~~~p~~g~~KLqFLL~~nPfP~ETFANl  316 (459)
T KOG4340|consen  237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNMDARPTEGFEKLQFLLQQNPFPPETFANL  316 (459)
T ss_pred             HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcccCCccccHHHHHHHHhcCCCChHHHHHH
Confidence            2223333       35668888888887776432 22345555543  33332222222222333333322345789999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh-cCCHHHHHHHHHhC-CC-CCCHHHHH
Q 010881          293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR-AGMLEAAKKVVREM-PI-EPDNYVLG  369 (498)
Q Consensus       293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~-~p~~~~~~  369 (498)
                      +-.||++.-++-|-.++.+-...-.           .-.+...|+ |++++.. .-..++|.+-+..+ +. .-......
T Consensus       317 LllyCKNeyf~lAADvLAEn~~lTy-----------k~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklA  384 (459)
T KOG4340|consen  317 LLLYCKNEYFDLAADVLAENAHLTY-----------KFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLA  384 (459)
T ss_pred             HHHHhhhHHHhHHHHHHhhCcchhH-----------HHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988888888766322100           001223333 3344433 34566666655544 10 00001111


Q ss_pred             HHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          370 ALLNACRVHGD---VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       370 ~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .-+.--...++   ...|++-|++.+++-.   .+....+++|.+..++..+.++|..-.+
T Consensus       385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  385 IQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            11111111111   2233444555554432   1456778899999999999999976654

>PLN02789 farnesyltranstransferase

Probab=98.65  E-value=1.3e-05  Score=73.36  Aligned_cols=221  Identities=10%  Similarity=-0.024  Sum_probs=154.5

Q ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881          190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHA-GIVGALTACAFLG-ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK  267 (498)
Q Consensus       190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  267 (498)
                      .+-..+...++.++|+..+.++.+.  .|+.. .++.--..+...+ +++++...++.+.+.. +.+..+|+.-...+.+
T Consensus        42 ~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~  118 (320)
T PLN02789         42 YFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK  118 (320)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence            3334455667788888888888764  45544 3443334444555 5788888888888775 5566677765555556


Q ss_pred             cCCH--HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881          268 CGCI--ETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL  342 (498)
Q Consensus       268 ~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~  342 (498)
                      .|+.  +++..+++++.+   +|..+|+...-.+...|+++++++.+.++++.+  |+           +...|+....+
T Consensus       119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d--~~-----------N~sAW~~R~~v  185 (320)
T PLN02789        119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED--VR-----------NNSAWNQRYFV  185 (320)
T ss_pred             cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC--CC-----------chhHHHHHHHH
Confidence            6653  667777777664   567788888888888999999999999998864  22           45777777666


Q ss_pred             Hhhc---CCH----HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          343 LGRA---GML----EAAKKVVREM-PIEP-DNYVLGALLNACRVH----GDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       343 ~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +.+.   |..    +++.++..++ ...| |...|+.+...+...    ++..+|.+.+.++...+|.++.+...|+..|
T Consensus       186 l~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~  265 (320)
T PLN02789        186 ITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLL  265 (320)
T ss_pred             HHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHH
Confidence            6554   222    4566666555 5566 777888888877763    3456799999999888999988899999999


Q ss_pred             HhcC------------------CcchHHHHHHhhh
Q 010881          410 ASTE------------------QWNGVEKVRRGME  426 (498)
Q Consensus       410 ~~~g------------------~~~~a~~~~~~m~  426 (498)
                      +...                  ..++|.++++.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        266 CEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             HhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence            8743                  2355777777773

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.65  E-value=1e-06  Score=84.92  Aligned_cols=215  Identities=14%  Similarity=0.050  Sum_probs=175.5

Q ss_pred             HHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010881          189 SAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC  268 (498)
Q Consensus       189 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  268 (498)
                      ..+...+...|-..+|..+|++...         +..++.+|...|+..+|..+..+..+  -+|+...|..+.+..-..
T Consensus       402 ~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~  470 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP  470 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh
Confidence            3566778888999999999988753         45678888899999999988887776  378999999998888777


Q ss_pred             CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCC
Q 010881          269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM  348 (498)
Q Consensus       269 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  348 (498)
                      .-+++|+++++....+   +-..+.....+.+++.++.+.|+.-.+.+  |           ....+|..+..+..+.++
T Consensus       471 s~yEkawElsn~~sar---A~r~~~~~~~~~~~fs~~~~hle~sl~~n--p-----------lq~~~wf~~G~~ALqlek  534 (777)
T KOG1128|consen  471 SLYEKAWELSNYISAR---AQRSLALLILSNKDFSEADKHLERSLEIN--P-----------LQLGTWFGLGCAALQLEK  534 (777)
T ss_pred             HHHHHHHHHhhhhhHH---HHHhhccccccchhHHHHHHHHHHHhhcC--c-----------cchhHHHhccHHHHHHhh
Confidence            7789999998876543   11222222344789999999998877642  1           246789999999999999


Q ss_pred             HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          349 LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       349 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      +..|.+.|... ...| +...||.+-.+|.+.++-.+|...++++++.+-++...+....-...+.|.|++|.+.+.++.
T Consensus       535 ~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll  614 (777)
T KOG1128|consen  535 EQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLL  614 (777)
T ss_pred             hHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence            99999999887 6677 578999999999999999999999999999998888888888889999999999999999997


Q ss_pred             hCCc
Q 010881          427 DNEV  430 (498)
Q Consensus       427 ~~~~  430 (498)
                      +...
T Consensus       615 ~~~~  618 (777)
T KOG1128|consen  615 DLRK  618 (777)
T ss_pred             Hhhh
Confidence            6543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.64  E-value=4.1e-06  Score=71.21  Aligned_cols=151  Identities=11%  Similarity=0.144  Sum_probs=111.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHH
Q 010881          259 TAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQH  335 (498)
Q Consensus       259 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~  335 (498)
                      ..+-..+...|+-+....+......   .|......++....+.|++..|...+++....  .|           +|..+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--~p-----------~d~~~  136 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--AP-----------TDWEA  136 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--CC-----------CChhh
Confidence            4555666667777766666666432   34445555777788888888888888887663  33           36888


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC
Q 010881          336 YGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE  413 (498)
Q Consensus       336 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  413 (498)
                      |+.+.-+|.+.|++++|..-|.+. .+.| ++..++.+...+.-.|+.+.|..++.......+.++.+-..|+.+....|
T Consensus       137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g  216 (257)
T COG5010         137 WNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQG  216 (257)
T ss_pred             hhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcC
Confidence            888888888888888888888777 4445 56667778888888888888888888888777777777778888888888


Q ss_pred             CcchHHHHH
Q 010881          414 QWNGVEKVR  422 (498)
Q Consensus       414 ~~~~a~~~~  422 (498)
                      ++++|..+.
T Consensus       217 ~~~~A~~i~  225 (257)
T COG5010         217 DFREAEDIA  225 (257)
T ss_pred             ChHHHHhhc
Confidence            888887765

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=7.5e-05  Score=73.32  Aligned_cols=202  Identities=9%  Similarity=0.013  Sum_probs=125.3

Q ss_pred             ChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC-----------CCc-chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 010881           19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY-----------RTT-FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP   86 (498)
Q Consensus        19 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~-----------~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p   86 (498)
                      +..+|..+.++|.+.  .+++-|.-.+-.|.+           .|. ..=....-.....|-+++|..+|.+-..     
T Consensus       756 S~~vW~nmA~McVkT--~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----  828 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKT--RRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----  828 (1416)
T ss_pred             hhHHHHHHHHHhhhh--ccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----
Confidence            567899999999998  888888887777752           121 2222222233467899999999998876     


Q ss_pred             CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---------------
Q 010881           87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---------------  151 (498)
Q Consensus        87 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------  151 (498)
                          |..+-..|...|.+++|.++-+.--+..   -..||.....-+-..++.+.|++.|++.-.               
T Consensus       829 ----~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~  901 (1416)
T KOG3617|consen  829 ----YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQ  901 (1416)
T ss_pred             ----HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHH
Confidence                4455567788899999998766543322   235666666777778889999998875321               


Q ss_pred             --------CChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881          152 --------RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI  223 (498)
Q Consensus       152 --------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  223 (498)
                              .|...|.-....+-..|+.+.|+.+|.....     |-++++..|-.|+.++|-++-++      .-|....
T Consensus       902 ~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAc  970 (1416)
T KOG3617|consen  902 IEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD-----YFSMVRIKCIQGKTDKAARIAEE------SGDKAAC  970 (1416)
T ss_pred             HHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----hhhheeeEeeccCchHHHHHHHh------cccHHHH
Confidence                    2444444455556678999999999887653     33444444444555555444332      1233333


Q ss_pred             HHHHHHHhccCChHHHHHHHHH
Q 010881          224 VGALTACAFLGALDQGRWIHAY  245 (498)
Q Consensus       224 ~~ll~~~~~~~~~~~a~~~~~~  245 (498)
                      ..+...|-..|++.+|..+|-+
T Consensus       971 YhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  971 YHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHH
Confidence            3444444444444444444433

>PF12854 PPR_1: PPR repeat

Probab=98.61  E-value=7.7e-08  Score=55.24  Aligned_cols=32  Identities=38%  Similarity=0.661  Sum_probs=22.6

Q ss_pred             CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881          250 GIELDIILGTAIIDMYAKCGCIETACSVFDSM  281 (498)
Q Consensus       250 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  281 (498)
                      |+.||..+|++||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56677777777777777777777777777666

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.59  E-value=0.0001  Score=71.46  Aligned_cols=259  Identities=13%  Similarity=0.147  Sum_probs=151.2

Q ss_pred             HHHHhCCChhhHHHHhhccCCCCh--hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHH
Q 010881          131 HLYATCNCMDPARKLFDMSVNRDV--ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF  208 (498)
Q Consensus       131 ~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  208 (498)
                      .+......+.+|+.+++.+...++  .-|..+...|+..|+++.|+++|-+..     .++-.|..|.+.|+|+.|.++-
T Consensus       740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla  814 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA  814 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence            344456677777777776665543  336677778888888888888887653     4566677888888888888876


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChh
Q 010881          209 NYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVF  287 (498)
Q Consensus       209 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~  287 (498)
                      .+..  |.......|..-..-.-..|++.+|.++|-.+.    .|+     ..|.+|-+.|..++.+++.++-.. .-..
T Consensus       815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~l~d  883 (1636)
T KOG3616|consen  815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDHLHD  883 (1636)
T ss_pred             HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence            6553  333444455555555566777777777653322    233     345667777777777777665432 1223


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH-
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNY-  366 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-  366 (498)
                      |...+..-|-..|+...|..-|-+..                     -|.+-+++|-..+.+++|.++-+.-|- .|.. 
T Consensus       884 t~~~f~~e~e~~g~lkaae~~flea~---------------------d~kaavnmyk~s~lw~dayriaktegg-~n~~k  941 (1636)
T KOG3616|consen  884 THKHFAKELEAEGDLKAAEEHFLEAG---------------------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEK  941 (1636)
T ss_pred             HHHHHHHHHHhccChhHHHHHHHhhh---------------------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHH
Confidence            45555666666777777766554432                     244455566666666666655544310 1111 


Q ss_pred             ----HH-------------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHH
Q 010881          367 ----VL-------------------GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRR  423 (498)
Q Consensus       367 ----~~-------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  423 (498)
                          .|                   ..-+.-.+..+-++-|.++-+-..+..  .+.+...++-.+...|++++|.+-+-
T Consensus       942 ~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyv 1019 (1636)
T KOG3616|consen  942 HVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYV 1019 (1636)
T ss_pred             HHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhH
Confidence                11                   111122233344444444443333222  23356677778888899988877766


Q ss_pred             hhhhCC
Q 010881          424 GMEDNE  429 (498)
Q Consensus       424 ~m~~~~  429 (498)
                      +..+.+
T Consensus      1020 eaikln 1025 (1636)
T KOG3616|consen 1020 EAIKLN 1025 (1636)
T ss_pred             HHhhcc
Confidence            665543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.58  E-value=0.00015  Score=78.21  Aligned_cols=316  Identities=10%  Similarity=-0.058  Sum_probs=197.2

Q ss_pred             CChhHHHHHhhhcCC----CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC--CC----CCCcc--hHHHHHHHHHccCC
Q 010881           36 GDLSHGYRLFVCLQY----RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS--DF----LPNNY--TFSFILRACADTSC  103 (498)
Q Consensus        36 g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--~~----~p~~~--~~~~ll~~~~~~g~  103 (498)
                      |+++.+...++.++.    .+..........+...|++++|...+......  ..    .|...  ....+...+...|+
T Consensus       388 g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~  467 (903)
T PRK04841        388 GELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGD  467 (903)
T ss_pred             CChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCC
Confidence            666767777766641    23333334444556788999999888877542  11    01111  11122234567899


Q ss_pred             cHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhCCChhhHHHHhhccCC-------CC--hhhHHHHHHHHHccCCH
Q 010881          104 LFVGLICHAQVIRLGWESYD----FVLNGLLHLYATCNCMDPARKLFDMSVN-------RD--VISWTSLINGYAKSGQI  170 (498)
Q Consensus       104 ~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~--~~~~~~li~~~~~~~~~  170 (498)
                      ++.|...+++..+.-...+.    ...+.+...+...|++++|...+++...       +.  ..++..+...+...|++
T Consensus       468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~  547 (903)
T PRK04841        468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL  547 (903)
T ss_pred             HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence            99999999888764222221    2345566677789999999888876542       11  23445566677889999


Q ss_pred             HHHHHHHhhCCC-------C----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHhccCC
Q 010881          171 SIARQMFDKMPE-------K----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCG--FRPN--HAGIVGALTACAFLGA  235 (498)
Q Consensus       171 ~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~~~  235 (498)
                      +.|...+++...       +    ....+..+...+...|++++|...+.+.....  ..+.  ...+..+.......|+
T Consensus       548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~  627 (903)
T PRK04841        548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD  627 (903)
T ss_pred             HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence            999888776532       1    12234455566777899999999888875431  1122  2334445556678899


Q ss_pred             hHHHHHHHHHHHHhCCCCC-hhHH-----HHHHHHHHhcCCHHHHHHHHhhCCCCCh-------hHHHHHHHHHHhcCCh
Q 010881          236 LDQGRWIHAYVDRNGIELD-IILG-----TAIIDMYAKCGCIETACSVFDSMPNRDV-------FAYTSLISGLANHDQS  302 (498)
Q Consensus       236 ~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~~~~  302 (498)
                      .+.|...+.......-... ...+     ...+..+...|+.+.|...+.....+..       ..+..+..++...|+.
T Consensus       628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~  707 (903)
T PRK04841        628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF  707 (903)
T ss_pred             HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence            9999988887754311111 1111     1122445568899999999877654321       1134566678889999


Q ss_pred             HHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          303 ASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                      ++|...+.+.....        ...+..+ ...+...+..++.+.|+.++|...+.+.
T Consensus       708 ~~A~~~l~~al~~~--------~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A  757 (903)
T PRK04841        708 DEAEIILEELNENA--------RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA  757 (903)
T ss_pred             HHHHHHHHHHHHHH--------HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999887641        0112222 2456677788888999999999988877

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.57  E-value=7.9e-06  Score=84.25  Aligned_cols=202  Identities=14%  Similarity=0.133  Sum_probs=157.8

Q ss_pred             CCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCC---ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-C-hhHH
Q 010881          217 RPNH-AGIVGALTACAFLGALDQGRWIHAYVDRN-GIEL---DIILGTAIIDMYAKCGCIETACSVFDSMPNR-D-VFAY  289 (498)
Q Consensus       217 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~  289 (498)
                      .||+ ..|...|......++.+.|+.+.+++... ++.-   -..+|.++++.-..-|.-+...++|+++.+- | ...|
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~ 1533 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVH 1533 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHH
Confidence            3443 45666777777888888888888777653 1111   1257777887777778888888999988862 3 4568


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CH
Q 010881          290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP---DN  365 (498)
Q Consensus       290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~  365 (498)
                      ..|...|.+.+.+++|.++++.|.++             +......|...++.+.+.++-+.|..+++++ ..-|   ..
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-------------F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv 1600 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-------------FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHV 1600 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHH-------------hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhH
Confidence            88888999999999999999999875             2245788999999999999999999999887 2223   34


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  431 (498)
                      ......+..-.+.|+.+++..+|+..+...|.....|..++..-.+.|+.+.+..+|++....++.
T Consensus      1601 ~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1601 EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            455566667788899999999999999999998889999999999999999999999999887765

>PF12854 PPR_1: PPR repeat

Probab=98.57  E-value=1.1e-07  Score=54.61  Aligned_cols=32  Identities=38%  Similarity=0.582  Sum_probs=25.9

Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                      |+.||..||+.||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56677888888888888888888888888876

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.57  E-value=4.4e-05  Score=65.09  Aligned_cols=216  Identities=10%  Similarity=0.005  Sum_probs=142.4

Q ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010881          190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVDRNGIELDIILGTAIIDMYAKC  268 (498)
Q Consensus       190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~  268 (498)
                      .+-++|...|.+.....-   .... -.|....+..+-......++.+.-. .+.+.+.......+......-...|+..
T Consensus        46 y~~raylAlg~~~~~~~e---I~~~-~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~  121 (299)
T KOG3081|consen   46 YMYRAYLALGQYQIVISE---IKEG-KATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHD  121 (299)
T ss_pred             HHHHHHHHcccccccccc---cccc-cCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcC
Confidence            344566666655433322   1111 1333333333333333334433333 3344444444444444444455678889


Q ss_pred             CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh---
Q 010881          269 GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR---  345 (498)
Q Consensus       269 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---  345 (498)
                      |++++|.+.+....  +......=...+.+..+.+-|.+.+++|.+-.               +..|.+.|..++.+   
T Consensus       122 ~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---------------ed~tLtQLA~awv~la~  184 (299)
T KOG3081|consen  122 GDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQID---------------EDATLTQLAQAWVKLAT  184 (299)
T ss_pred             CChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---------------hHHHHHHHHHHHHHHhc
Confidence            99999999988833  33333333445667788899999999997742               35666767666654   


Q ss_pred             -cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH-HH
Q 010881          346 -AGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE-KV  421 (498)
Q Consensus       346 -~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~  421 (498)
                       .+.+..|.-+|++|  ...|+..+.+....++...|++++|..+++.++..++.++.+...++-.--..|.-.++. +.
T Consensus       185 ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~  264 (299)
T KOG3081|consen  185 GGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERN  264 (299)
T ss_pred             cchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHH
Confidence             45789999999999  478899999999999999999999999999999999999988888887777778776654 34


Q ss_pred             HHhhh
Q 010881          422 RRGME  426 (498)
Q Consensus       422 ~~~m~  426 (498)
                      +...+
T Consensus       265 l~QLk  269 (299)
T KOG3081|consen  265 LSQLK  269 (299)
T ss_pred             HHHHH
Confidence            44444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.57  E-value=1e-05  Score=76.23  Aligned_cols=240  Identities=18%  Similarity=0.103  Sum_probs=170.5

Q ss_pred             HHHhCCChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHH
Q 010881          132 LYATCNCMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKEAL  205 (498)
Q Consensus       132 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~  205 (498)
                      -+.+.|++.+|.-.|+..+..   +..+|..|....+..++-..|+..+.+..+-   |....-.|.-.|...|.-.+|+
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence            356778888888888887654   4568888888888888888888888887653   5666667777888999999999


Q ss_pred             HHHHHHHHcCCCC--------CHHHHHHHHHHHhccCChHHHHHHHHHH-HHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010881          206 EHFNYMQLCGFRP--------NHAGIVGALTACAFLGALDQGRWIHAYV-DRNGIELDIILGTAIIDMYAKCGCIETACS  276 (498)
Q Consensus       206 ~~~~~m~~~g~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  276 (498)
                      ..++.-.....+-        +..+-..  ..+.....+....++|-++ ...+..+|..+...|.-.|--.|++++|.+
T Consensus       374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            9998876542110        0000000  1111222234444555444 445555888899999999999999999999


Q ss_pred             HHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 010881          277 VFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK  353 (498)
Q Consensus       277 ~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  353 (498)
                      .|+.+..  | |...||.|...++...+.++|+..|.+.++  ++|+           =+++...|.-.|...|.+++|.
T Consensus       452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~-----------yVR~RyNlgIS~mNlG~ykEA~  518 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPG-----------YVRVRYNLGISCMNLGAYKEAV  518 (579)
T ss_pred             HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCC-----------eeeeehhhhhhhhhhhhHHHHH
Confidence            9998764  3 778999999999999999999999999987  4565           2677778888999999999998


Q ss_pred             HHHHhC-CC-----------CCCHHHHHHHHHHHHhcCCHHHHHH
Q 010881          354 KVVREM-PI-----------EPDNYVLGALLNACRVHGDVDLGKE  386 (498)
Q Consensus       354 ~~~~~~-~~-----------~p~~~~~~~l~~~~~~~g~~~~A~~  386 (498)
                      ..|-.. .+           .++...|..|=.++...++.|.+.+
T Consensus       519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~  563 (579)
T KOG1125|consen  519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE  563 (579)
T ss_pred             HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence            887654 10           1123456665555555565554433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.55  E-value=1.1e-05  Score=68.76  Aligned_cols=122  Identities=10%  Similarity=0.078  Sum_probs=93.5

Q ss_pred             cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH-
Q 010881          268 CGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL-  343 (498)
Q Consensus       268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~-  343 (498)
                      .++.+++...++...+   .|...|..|...|...|++++|...|++..+.  .|+           +...+..+..++ 
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--~P~-----------~~~~~~~lA~aL~  118 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--RGE-----------NAELYAALATVLY  118 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHH
Confidence            4555666666665443   46778888888888888889999888888774  454           578888888864 


Q ss_pred             hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          344 GRAGM--LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       344 ~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                      ...|+  .++|.+++++. ...| +...+..+...+...|++++|+..|+++++..|.+..-+
T Consensus       119 ~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~  181 (198)
T PRK10370        119 YQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRT  181 (198)
T ss_pred             HhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence            66676  58999999988 5556 677888888889999999999999999999887765433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.53  E-value=2.5e-06  Score=67.57  Aligned_cols=97  Identities=7%  Similarity=-0.040  Sum_probs=87.2

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +....-.+...+...|++++|..+|+-+ -+.| +..-|..|..+|...|++++|+..|.++..++|+++.++..++.++
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~  113 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            4556666777888999999999999998 5566 6778888999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhC
Q 010881          410 ASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~  428 (498)
                      ...|+.+.|.+.|+.....
T Consensus       114 L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999888754

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.51  E-value=7.2e-05  Score=75.00  Aligned_cols=95  Identities=11%  Similarity=0.059  Sum_probs=47.4

Q ss_pred             ChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCC-----cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHH
Q 010881           19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRT-----TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF   93 (498)
Q Consensus        19 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~   93 (498)
                      +...+..+...|++.  .+++.|..+.-...+.+     .+.|-...-.|.+.++...|+.-|+....... -|...|..
T Consensus       525 daeaaaa~adtyae~--~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~g  601 (1238)
T KOG1127|consen  525 DAEAAAASADTYAEE--STWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLG  601 (1238)
T ss_pred             hhhhHHHHHHHhhcc--ccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHH
Confidence            456667777888888  88888877744332211     11122222234444445555555544444211 13444455


Q ss_pred             HHHHHHccCCcHHHHHHHHHHHH
Q 010881           94 ILRACADTSCLFVGLICHAQVIR  116 (498)
Q Consensus        94 ll~~~~~~g~~~~a~~~~~~~~~  116 (498)
                      +..+|.+.|++..|.++|.++..
T Consensus       602 LGeAY~~sGry~~AlKvF~kAs~  624 (1238)
T KOG1127|consen  602 LGEAYPESGRYSHALKVFTKASL  624 (1238)
T ss_pred             HHHHHHhcCceehHHHhhhhhHh
Confidence            55555555555555555544443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.50  E-value=5.6e-05  Score=77.37  Aligned_cols=180  Identities=11%  Similarity=0.033  Sum_probs=109.5

Q ss_pred             HHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010881          191 MINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC  270 (498)
Q Consensus       191 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  270 (498)
                      ++.......++.-+..++..|...  .-+...+..+..+|.+.|+.+++..+|+++.+.. +-|+.+.|.+...|... +
T Consensus        89 ~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d  164 (906)
T PRK14720         89 LIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D  164 (906)
T ss_pred             hhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence            334444444554444444444442  2233456666667777777777777777777766 66777778888888777 8


Q ss_pred             HHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881          271 IETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE  350 (498)
Q Consensus       271 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  350 (498)
                      +++|...+.+..           ..+...+++..+.++|.++...  .|+           +...+..+.......    
T Consensus       165 L~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~-----------d~d~f~~i~~ki~~~----  216 (906)
T PRK14720        165 KEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSD-----------DFDFFLRIERKVLGH----  216 (906)
T ss_pred             HHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--Ccc-----------cchHHHHHHHHHHhh----
Confidence            888888776643           3366677888888888888774  222           222222222221111    


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881          351 AAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA  410 (498)
Q Consensus       351 ~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  410 (498)
                              .+...-..++-.+...|...++++++..+++.+++.+|.+..+...++..|.
T Consensus       217 --------~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        217 --------REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             --------hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence                    1222334455556666777777777777777777777777766666666665

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.47  E-value=0.00012  Score=61.99  Aligned_cols=192  Identities=13%  Similarity=0.086  Sum_probs=143.5

Q ss_pred             CCCHhHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH
Q 010881          198 VDLFKEALEHFNYMQL---CG-FRPNHAG-IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE  272 (498)
Q Consensus       198 ~g~~~~a~~~~~~m~~---~g-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  272 (498)
                      ..+.++..+++.++..   .| ..++..+ |-.++-+....++.+.|...++.+.+.- +-+..+-..-.-.+-..|.++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            4567888888887764   33 4555543 4456667778899999999999988764 444444333333455689999


Q ss_pred             HHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH
Q 010881          273 TACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML  349 (498)
Q Consensus       273 ~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  349 (498)
                      +|.++++.+.+.   |.+++-.-+...-..|+.-+|++-+.+..+.             +..|...|.-+.+.|...|++
T Consensus       104 ~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-------------F~~D~EAW~eLaeiY~~~~~f  170 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-------------FMNDQEAWHELAEIYLSEGDF  170 (289)
T ss_pred             hHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-------------hcCcHHHHHHHHHHHHhHhHH
Confidence            999999999864   4556776677777788888999988888874             344799999999999999999


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchHHH
Q 010881          350 EAAKKVVREM-PIEP-DNYVLGALLNACRVHG---DVDLGKETVESLVERSLDHEGVHV  403 (498)
Q Consensus       350 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~  403 (498)
                      ++|.-.++++ -..| ++..+..+...+.-.|   +..-|.+.|.+++++.|.+...+.
T Consensus       171 ~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~  229 (289)
T KOG3060|consen  171 EKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF  229 (289)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence            9999999998 4456 6666667776654444   678899999999999996654444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.46  E-value=0.0014  Score=61.70  Aligned_cols=390  Identities=10%  Similarity=0.067  Sum_probs=231.7

Q ss_pred             CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC--C-CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHH
Q 010881           17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--R-TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF   93 (498)
Q Consensus        17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~   93 (498)
                      +.|..+|+.||+-+...   ..+++++.++++..  | ....|..-|+.-.+.++++....+|.+.+.+-+  +...|..
T Consensus        17 P~di~sw~~lire~qt~---~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~l   91 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ---PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKL   91 (656)
T ss_pred             CccHHHHHHHHHHHccC---CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHH
Confidence            45789999999977664   79999999999874  3 566899999999999999999999999877433  4666666


Q ss_pred             HHHHHHc-cCCcHHH----HHHHHHHH-HhCCCC-chhHHHHHHHH---------HHhCCChhhHHHHhhccCC-C----
Q 010881           94 ILRACAD-TSCLFVG----LICHAQVI-RLGWES-YDFVLNGLLHL---------YATCNCMDPARKLFDMSVN-R----  152 (498)
Q Consensus        94 ll~~~~~-~g~~~~a----~~~~~~~~-~~~~~~-~~~~~~~l~~~---------~~~~g~~~~a~~~~~~~~~-~----  152 (498)
                      .|.-..+ .++...+    .+.|+-.+ +.|..+ +-..|+..+..         |....+++...++|+++.. |    
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl  171 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL  171 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence            6654332 2333333    23344333 345433 22345555543         2333466778888887653 2    


Q ss_pred             -----ChhhHHHHHHHH-------HccCCHHHHHHHHhhCCC-------------------------------------C
Q 010881          153 -----DVISWTSLINGY-------AKSGQISIARQMFDKMPE-------------------------------------K  183 (498)
Q Consensus       153 -----~~~~~~~li~~~-------~~~~~~~~A~~~~~~~~~-------------------------------------~  183 (498)
                           |-..|..=|+..       -+...+..|.++++++..                                     |
T Consensus       172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp  251 (656)
T KOG1914|consen  172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP  251 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence                 112222111111       122233444444443321                                     0


Q ss_pred             ------C------hhHHHHHHH---------------------HHHhCCC-------HhHHHHHHHHHHHcCCCCCHHHH
Q 010881          184 ------N------AVSWSAMIN---------------------GYVQVDL-------FKEALEHFNYMQLCGFRPNHAGI  223 (498)
Q Consensus       184 ------~------~~~~~~li~---------------------~~~~~g~-------~~~a~~~~~~m~~~g~~p~~~~~  223 (498)
                            +      ..+|+..+.                     .+...|+       -+++..+++.....-...+..+|
T Consensus       252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly  331 (656)
T KOG1914|consen  252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY  331 (656)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  0      001111111                     1111222       23334444433322112222222


Q ss_pred             HHHHHHHhccC---ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHH
Q 010881          224 VGALTACAFLG---ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RDVFAYTSLISG  295 (498)
Q Consensus       224 ~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~  295 (498)
                      ..+...--..-   ..+....+++.+...-..--..+|..+++.-.+..-+..|..+|.++.+     .++..+++++.-
T Consensus       332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy  411 (656)
T KOG1914|consen  332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY  411 (656)
T ss_pred             HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence            22221111111   2444455555555443333345777888888888899999999999875     367788888887


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC--CHHHHHH
Q 010881          296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---PIEP--DNYVLGA  370 (498)
Q Consensus       296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~  370 (498)
                      || .++..-|..+|+--+..  .+|           ++.--...++.+...++-..|..+|++.   .+.|  ....|..
T Consensus       412 ~c-skD~~~AfrIFeLGLkk--f~d-----------~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r  477 (656)
T KOG1914|consen  412 YC-SKDKETAFRIFELGLKK--FGD-----------SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDR  477 (656)
T ss_pred             Hh-cCChhHHHHHHHHHHHh--cCC-----------ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHH
Confidence            76 56778899999887664  222           3555567788888999999999999988   2344  3578999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCC--C--chHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881          371 LLNACRVHGDVDLGKETVESLVERSLD--H--EGVHVLLSNIYASTEQWNGVEKVRRGM  425 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~~a~~~~~~m  425 (498)
                      ++.--..-|+...+.++-++....-|.  .  ...-..+..-|.-.+++..-..-++.+
T Consensus       478 ~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l  536 (656)
T KOG1914|consen  478 MLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL  536 (656)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence            999999999999999999988876662  1  123345556666666655444434333

>PLN02789 farnesyltranstransferase

Probab=98.45  E-value=4.8e-05  Score=69.74  Aligned_cols=198  Identities=10%  Similarity=-0.020  Sum_probs=146.9

Q ss_pred             CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHH
Q 010881          199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG-CIETACSV  277 (498)
Q Consensus       199 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~  277 (498)
                      +++.+|..+|+....                  ..+..++|......+.+.. +-+..+|+.-..++...| ++++++..
T Consensus        34 ~~~~~a~~~~ra~l~------------------~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~   94 (320)
T PLN02789         34 PEFREAMDYFRAVYA------------------SDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDF   94 (320)
T ss_pred             HHHHHHHHHHHHHHH------------------cCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHH
Confidence            455666666665544                  4467888999998888775 555567776666777777 68999999


Q ss_pred             HhhCCC---CChhHHHHHHHHHHhcCCh--HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 010881          278 FDSMPN---RDVFAYTSLISGLANHDQS--ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA  352 (498)
Q Consensus       278 ~~~~~~---~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  352 (498)
                      ++++.+   ++..+|+.....+.+.|+.  ++++.+++++.+.  .|+           +..+|+...-++...|+++++
T Consensus        95 ~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpk-----------Ny~AW~~R~w~l~~l~~~~ee  161 (320)
T PLN02789         95 AEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAK-----------NYHAWSHRQWVLRTLGGWEDE  161 (320)
T ss_pred             HHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--Ccc-----------cHHHHHHHHHHHHHhhhHHHH
Confidence            988775   4556777666566666653  6788899888874  344           689999999999999999999


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHhc---CC----HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc----CCcchHH
Q 010881          353 KKVVREM-PIEP-DNYVLGALLNACRVH---GD----VDLGKETVESLVERSLDHEGVHVLLSNIYAST----EQWNGVE  419 (498)
Q Consensus       353 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~  419 (498)
                      ++.++++ ...| |...|+.....+.+.   |.    .+.+++...+++...|++..+|..+..++...    ++..+|.
T Consensus       162 L~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~  241 (320)
T PLN02789        162 LEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVS  241 (320)
T ss_pred             HHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHH
Confidence            9999998 4445 677777766655544   22    35788888899999999999999999998873    4456687


Q ss_pred             HHHHhhhhC
Q 010881          420 KVRRGMEDN  428 (498)
Q Consensus       420 ~~~~~m~~~  428 (498)
                      +.+.+..+.
T Consensus       242 ~~~~~~~~~  250 (320)
T PLN02789        242 SVCLEVLSK  250 (320)
T ss_pred             HHHHHhhcc
Confidence            777766553

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.43  E-value=3.1e-06  Score=67.75  Aligned_cols=98  Identities=10%  Similarity=0.033  Sum_probs=87.7

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +......+...+...|++++|.+.++.. ...| +...+..+...+...|++++|...++++++.+|+++..+..++.++
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~   95 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECL   95 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            4566778888999999999999999998 4445 7788888999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...|++++|...+++..+..
T Consensus        96 ~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        96 LALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHhc
Confidence            99999999999998887654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.41  E-value=5.8e-05  Score=78.20  Aligned_cols=207  Identities=12%  Similarity=0.101  Sum_probs=163.2

Q ss_pred             HHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC--------ChhhHHHHHHHHHccCCHHHHHHHHhhCCC
Q 010881          111 HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR--------DVISWTSLINGYAKSGQISIARQMFDKMPE  182 (498)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~A~~~~~~~~~  182 (498)
                      |++++... +-+...|-..|......++++.|++++++....        -...|.++++.-..-|.-+...++|++..+
T Consensus      1447 ferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred             HHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence            34444443 234566777888888888999998888876532        235688888887777888888889988765


Q ss_pred             C--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--ChhHH
Q 010881          183 K--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL--DIILG  258 (498)
Q Consensus       183 ~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~  258 (498)
                      -  ....|..|...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.++.+.- +.  .....
T Consensus      1526 ycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~I 1603 (1710)
T KOG1070|consen 1526 YCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFI 1603 (1710)
T ss_pred             hcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHH
Confidence            3  2456888999999999999999999999876 34566788888888899999999999998887752 22  34566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881          259 TAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN  320 (498)
Q Consensus       259 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  320 (498)
                      .-.++.-.+.|+.+.+..+|+....   +-...|+..|+.-.++|+.+.+..+|++....++.|.
T Consensus      1604 skfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1604 SKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred             HHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence            6677777899999999999998875   3567899999999999999999999999999887665

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=0.00063  Score=64.01  Aligned_cols=394  Identities=12%  Similarity=0.014  Sum_probs=238.9

Q ss_pred             hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC--CC-cchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881            3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY--RT-TFIWNTMIRGFAEKNEPIKAFALYKQM   79 (498)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m   79 (498)
                      .|...+-..+...- +|...|+.-..+|++.  |++++|.+=-.+-.+  |+ ...|+....++.-.|++++|+..|.+-
T Consensus        20 ~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~G   96 (539)
T KOG0548|consen   20 TAIRLFTEAIMLSP-TNHVLYSNRSAAYASL--GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSEG   96 (539)
T ss_pred             HHHHHHHHHHccCC-CccchhcchHHHHHHH--hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHHH
Confidence            45555655665553 3778888888999999  999999876655442  33 347888888888899999999999998


Q ss_pred             HHCCCCCC-cchHHHHHHHHHcc---CCcHHHHHHHHHHHHhC---CCCchhHHHHHHHHHHh----------CCChhhH
Q 010881           80 LRSDFLPN-NYTFSFILRACADT---SCLFVGLICHAQVIRLG---WESYDFVLNGLLHLYAT----------CNCMDPA  142 (498)
Q Consensus        80 ~~~~~~p~-~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~----------~g~~~~a  142 (498)
                      ++  ..|+ ...++-+..++...   ++.-..-.++..+....   .......|..++..+-+          -..+-.+
T Consensus        97 L~--~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a  174 (539)
T KOG0548|consen   97 LE--KDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKA  174 (539)
T ss_pred             hh--cCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHH
Confidence            77  3454 34455555554111   00000000111110000   00001111112211111          0001111


Q ss_pred             HHHhh----------------ccCCC------------C----------hhhHHHHHHHHHccCCHHHHHHHHhhCCCC-
Q 010881          143 RKLFD----------------MSVNR------------D----------VISWTSLINGYAKSGQISIARQMFDKMPEK-  183 (498)
Q Consensus       143 ~~~~~----------------~~~~~------------~----------~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-  183 (498)
                      .-.+.                .+..|            |          ..-...+.++..+..+++.|++-++...+. 
T Consensus       175 ~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~  254 (539)
T KOG0548|consen  175 DGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA  254 (539)
T ss_pred             HHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh
Confidence            11110                00011            0          012445677777888888888888877643 


Q ss_pred             -ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH-------HHHHHHhccCChHHHHHHHHHHHHhCCCCCh
Q 010881          184 -NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV-------GALTACAFLGALDQGRWIHAYVDRNGIELDI  255 (498)
Q Consensus       184 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  255 (498)
                       ++.-++....+|...|.+.++...-....+.|-. ...-|+       .+..++.+.++++.+...|.........|+.
T Consensus       255 ~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~  333 (539)
T KOG0548|consen  255 TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDL  333 (539)
T ss_pred             hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHH
Confidence             4444666777888889888887777776665521 112222       2334566678888999998886654333322


Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCC--CCCh-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC
Q 010881          256 ILGTAIIDMYAKCGCIETACSVFDSMP--NRDV-FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG  332 (498)
Q Consensus       256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~  332 (498)
                               ..+....+++....+...  .|.. .-.-.-...+.+.|++..|+..|.+++...  |+           |
T Consensus       334 ---------ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~--P~-----------D  391 (539)
T KOG0548|consen  334 ---------LSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD--PE-----------D  391 (539)
T ss_pred             ---------HHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--Cc-----------h
Confidence                     223344455555444332  2222 111112567888999999999999998863  65           7


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA  410 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  410 (498)
                      ...|+...-+|.+.|.+..|+.-.+.. ...|+ ...|..=..++....+++.|++.|++.++.+|.+..+...+.++..
T Consensus       392 a~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  392 ARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE  471 (539)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            999999999999999999999987776 55564 4455555566677789999999999999999998877666666666


Q ss_pred             hcCCcchHHHHHHh
Q 010881          411 STEQWNGVEKVRRG  424 (498)
Q Consensus       411 ~~g~~~~a~~~~~~  424 (498)
                      .........++.++
T Consensus       472 a~~~~~~~ee~~~r  485 (539)
T KOG0548|consen  472 AQRGDETPEETKRR  485 (539)
T ss_pred             HhhcCCCHHHHHHh
Confidence            54334444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.41  E-value=3.9e-05  Score=68.02  Aligned_cols=186  Identities=13%  Similarity=-0.032  Sum_probs=113.8

Q ss_pred             CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh--
Q 010881          183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNH----AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII--  256 (498)
Q Consensus       183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--  256 (498)
                      .....+..+...+...|++++|...|+++....  |+.    .++..+..++...|++++|...++.+.+.. +.+..  
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~  107 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD  107 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence            356677778888888888998888888887642  332    345566667777778888888877777653 22222  


Q ss_pred             -HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh-----hCCC
Q 010881          257 -LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI-----YGIE  330 (498)
Q Consensus       257 -~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-----~~~~  330 (498)
                       ++..+..++...            .           ...+...|+.++|...|+++...  .|+......     ....
T Consensus       108 ~a~~~~g~~~~~~------------~-----------~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~~  162 (235)
T TIGR03302       108 YAYYLRGLSNYNQ------------I-----------DRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYLR  162 (235)
T ss_pred             HHHHHHHHHHHHh------------c-----------ccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHHH
Confidence             233333333322            0           00111224555666666665543  222100000     0000


Q ss_pred             C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881          331 P-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI---EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       331 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  396 (498)
                      . .......+...+.+.|++++|...+++. ..   .| ....+..+..++...|++++|...++.+....|
T Consensus       163 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       163 NRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            0 0011235667888999999999999988 22   23 357888999999999999999999988876655

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.38  E-value=9.8e-06  Score=75.73  Aligned_cols=122  Identities=16%  Similarity=0.095  Sum_probs=95.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 010881          289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNY  366 (498)
Q Consensus       289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~  366 (498)
                      ...|+..+...++++.|..+|+++.+..                +.....++..+...++-.+|.+++++. ...| +..
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~----------------pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~  235 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD----------------PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSE  235 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC----------------CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence            3445556666788888888888887752                234555777777788888888888877 3334 666


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      .+..-...|...++++.|+.+.+++++..|++..+|..|+.+|...|++++|+..++.+.
T Consensus       236 LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  236 LLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            666667778889999999999999999999998899999999999999999998888875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.36  E-value=9.5e-05  Score=63.12  Aligned_cols=155  Identities=19%  Similarity=0.061  Sum_probs=114.3

Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcC
Q 010881          224 VGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHD  300 (498)
Q Consensus       224 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~  300 (498)
                      ..+-..+...|+-+....+........ +.|......++....+.|++..|...|++...   +|...|+.+.-+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence            334445555566655555554433222 44555666788888888999999998888764   47788888888999999


Q ss_pred             ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 010881          301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVH  378 (498)
Q Consensus       301 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~  378 (498)
                      +.+.|..-|.+..+  +.|+           +...++.|.-.+.-.|+++.|..++...  .-.-|...-..+.......
T Consensus       149 r~~~Ar~ay~qAl~--L~~~-----------~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~  215 (257)
T COG5010         149 RFDEARRAYRQALE--LAPN-----------EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQ  215 (257)
T ss_pred             ChhHHHHHHHHHHH--hccC-----------CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhc
Confidence            99999988888877  4555           4678888888888899999999988887  2223677777888888888


Q ss_pred             CCHHHHHHHHHHHH
Q 010881          379 GDVDLGKETVESLV  392 (498)
Q Consensus       379 g~~~~A~~~~~~~~  392 (498)
                      |++++|..+...-.
T Consensus       216 g~~~~A~~i~~~e~  229 (257)
T COG5010         216 GDFREAEDIAVQEL  229 (257)
T ss_pred             CChHHHHhhccccc
Confidence            99998888776543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.36  E-value=3.1e-05  Score=75.00  Aligned_cols=179  Identities=15%  Similarity=-0.005  Sum_probs=139.4

Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcC
Q 010881          223 IVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHD  300 (498)
Q Consensus       223 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~  300 (498)
                      =..+...+.+.|-...|..+++++.         .+..++.+|+..|+..+|..+..+..+  |+...|..+.+......
T Consensus       401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s  471 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPS  471 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChH
Confidence            3344555666777777777776543         456677888888888888887765544  57777888887777777


Q ss_pred             ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 010881          301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH  378 (498)
Q Consensus       301 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~  378 (498)
                      -+++|.++.+.....                   .-..+.....+.+++.++.+.|+.- .++| ...+|-.+..+..+.
T Consensus       472 ~yEkawElsn~~sar-------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALql  532 (777)
T KOG1128|consen  472 LYEKAWELSNYISAR-------------------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQL  532 (777)
T ss_pred             HHHHHHHHhhhhhHH-------------------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHH
Confidence            778888887765432                   2222333344578999999999875 5556 678898888888999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       379 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ++++.|.+.|...+.++|++...|+.+..+|.+.|+-.+|...+++..+.+
T Consensus       533 ek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  533 EKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             hhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999999999999998877

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.33  E-value=0.00017  Score=73.11  Aligned_cols=195  Identities=15%  Similarity=0.019  Sum_probs=138.7

Q ss_pred             hHHHHHHHHHccCCHHHHHH-HHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010881          156 SWTSLINGYAKSGQISIARQ-MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG  234 (498)
Q Consensus       156 ~~~~li~~~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  234 (498)
                      ....+=.+.+.-|..++|-+ ++.+.        ..++....+.....+++.-....... ...+...+..|.......|
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~~~~g  100 (694)
T PRK15179         30 ILDLLEAALAEPGESEEAGRELLQQA--------RQVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVARALEAAH  100 (694)
T ss_pred             HHhHHHHHhcCcccchhHHHHHHHHH--------HHHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHHHHHHcC
Confidence            33444444555666555533 22222        12333333333334444333333332 4556788888888999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHH
Q 010881          235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMR  311 (498)
Q Consensus       235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~  311 (498)
                      .+++|..+++.+.+.. +-+......+..++.+.+++++|...+++...  | +......+..++.+.|++++|..+|++
T Consensus       101 ~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~  179 (694)
T PRK15179        101 RSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFER  179 (694)
T ss_pred             CcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            9999999999998875 55667778889999999999999999998876  3 456677778889999999999999999


Q ss_pred             HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 010881          312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLN  373 (498)
Q Consensus       312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~  373 (498)
                      +...  .|+           +..++..+..++...|+.++|...|++.  ...|....|+.++.
T Consensus       180 ~~~~--~p~-----------~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~  230 (694)
T PRK15179        180 LSRQ--HPE-----------FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV  230 (694)
T ss_pred             HHhc--CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH
Confidence            9874  333           4788999999999999999999999988  33455566665553

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=6e-05  Score=69.91  Aligned_cols=120  Identities=14%  Similarity=0.073  Sum_probs=93.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHH
Q 010881          295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALL  372 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~  372 (498)
                      .+...|++++|+..++.+...  .|+           |+..+....+.+.+.++.++|.+.++++ ...|+ ....-.+.
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~--~P~-----------N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a  381 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAA--QPD-----------NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLA  381 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            455678888888888887764  444           5677777788888888888888888887 56675 55566677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .++.+.|++++|+.+++.....+|+++..|..|+.+|...|+..++.....++..
T Consensus       382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            7888888888888888888888888888888888888888887777766655543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.29  E-value=0.00061  Score=58.36  Aligned_cols=173  Identities=13%  Similarity=0.085  Sum_probs=107.3

Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-Ch
Q 010881          208 FNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DV  286 (498)
Q Consensus       208 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~  286 (498)
                      .+.+.......+......-...|...+++++|.+......      +......=+..+.+..+++.|.+.+++|.+- +-
T Consensus        96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided  169 (299)
T KOG3081|consen   96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED  169 (299)
T ss_pred             HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence            3334333333333333344445667777777776655411      2233333345556777788888888887763 34


Q ss_pred             hHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--C
Q 010881          287 FAYTSLISGLAN----HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--P  360 (498)
Q Consensus       287 ~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~  360 (498)
                      .|.+-|..++.+    .+.+.+|.-+|++|-++             ..|+..+.+-...++...|++++|..++++.  .
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-------------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k  236 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-------------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK  236 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-------------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            455556665544    35677888888888663             4566778888888888888888888888877  3


Q ss_pred             CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCc
Q 010881          361 IEPDNYVLGALLNACRVHGDV-DLGKETVESLVERSLDHE  399 (498)
Q Consensus       361 ~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~  399 (498)
                      -..++.++..++..-...|.. +--.+.+.+.....|.++
T Consensus       237 d~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~  276 (299)
T KOG3081|consen  237 DAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP  276 (299)
T ss_pred             cCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence            333666666666655555544 444556667776677765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.24  E-value=0.005  Score=58.26  Aligned_cols=366  Identities=13%  Similarity=0.105  Sum_probs=221.3

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHh-CCCchH----HHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAE-KNEPIK----AFA   74 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~-~~~~~~----A~~   74 (498)
                      +++|..+.++... ++..+..|..-|..-.+.  .+++..+.+|.+-.  .-+...|.+-|+--.+ .++...    ..+
T Consensus        36 ~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkvLnlDLW~lYl~YVR~~~~~~~~~r~~m~q  112 (656)
T KOG1914|consen   36 DKVRETYEQLVNV-FPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKVLNLDLWKLYLSYVRETKGKLFGYREKMVQ  112 (656)
T ss_pred             HHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHccCcchHHHHHHH
Confidence            4566777776644 455678888888888888  99999999998733  4578888888875544 333333    344


Q ss_pred             HHHHhHH-CCCCCCcc-hHHHHHHHH---------HccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH------HH----
Q 010881           75 LYKQMLR-SDFLPNNY-TFSFILRAC---------ADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH------LY----  133 (498)
Q Consensus        75 ~~~~m~~-~~~~p~~~-~~~~ll~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~------~~----  133 (498)
                      .|+-..+ .|+.+-.. .|+..+..+         ....+++...+++++++.....--...|+....      ..    
T Consensus       113 Ay~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK  192 (656)
T KOG1914|consen  113 AYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARK  192 (656)
T ss_pred             HHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555443 35444322 244433332         223355667777777775433222233322111      00    


Q ss_pred             ---HhCCChhhHHHHhhccC------CCC---------------hhhHHHHHHH--------------------------
Q 010881          134 ---ATCNCMDPARKLFDMSV------NRD---------------VISWTSLING--------------------------  163 (498)
Q Consensus       134 ---~~~g~~~~a~~~~~~~~------~~~---------------~~~~~~li~~--------------------------  163 (498)
                         -+...+-.|.++++++.      ...               ...|-.+|.-                          
T Consensus       193 ~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~l  272 (656)
T KOG1914|consen  193 FIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCL  272 (656)
T ss_pred             HHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHH
Confidence               11223444555554321      000               0112222211                          


Q ss_pred             -----------------------HHccCC-------HHHHHHHHhhCCC----CChhHHHHHHHHHHhCC---CHhHHHH
Q 010881          164 -----------------------YAKSGQ-------ISIARQMFDKMPE----KNAVSWSAMINGYVQVD---LFKEALE  206 (498)
Q Consensus       164 -----------------------~~~~~~-------~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g---~~~~a~~  206 (498)
                                             +...|+       -+++..+++....    .+..+|..+...--..-   ..+....
T Consensus       273 l~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~  352 (656)
T KOG1914|consen  273 LYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHE  352 (656)
T ss_pred             HHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHH
Confidence                                   111222       2334444443332    12233333322111111   2566667


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010881          207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPN--  283 (498)
Q Consensus       207 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  283 (498)
                      .+++++..-..--..+|...++...+...+..|..+|.++.+.+..+ ++.++++++..|| .++.+-|.++|+.-.+  
T Consensus       353 ~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf  431 (656)
T KOG1914|consen  353 IYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF  431 (656)
T ss_pred             HHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc
Confidence            77777654323334578888888889999999999999999887666 7888899999887 5688999999997554  


Q ss_pred             C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---
Q 010881          284 R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---  359 (498)
Q Consensus       284 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---  359 (498)
                      + ++.--...+.-+...++-..+..+|++....++.|+.          ....|..+++.=..-|++..+.++-+++   
T Consensus       432 ~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k----------s~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  432 GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK----------SKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh----------hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            3 4445566777788889999999999999998666663          6789999999999999999999998876   


Q ss_pred             -C--CCCCHHHHHHHHHHHHhcCCH
Q 010881          360 -P--IEPDNYVLGALLNACRVHGDV  381 (498)
Q Consensus       360 -~--~~p~~~~~~~l~~~~~~~g~~  381 (498)
                       +  ..+....-..+++-|.-.+.+
T Consensus       502 f~~~qe~~~~~~~~~v~RY~~~d~~  526 (656)
T KOG1914|consen  502 FPADQEYEGNETALFVDRYGILDLY  526 (656)
T ss_pred             cchhhcCCCChHHHHHHHHhhcccc
Confidence             2  222222334455556555544

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.23  E-value=2.1e-06  Score=50.06  Aligned_cols=35  Identities=29%  Similarity=0.540  Sum_probs=30.4

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc
Q 010881           54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN   88 (498)
Q Consensus        54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~   88 (498)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37899999999999999999999999988888874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.18  E-value=3e-06  Score=49.06  Aligned_cols=33  Identities=24%  Similarity=0.521  Sum_probs=27.2

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC
Q 010881           54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP   86 (498)
Q Consensus        54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p   86 (498)
                      .+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888776

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.18  E-value=0.00024  Score=66.02  Aligned_cols=137  Identities=13%  Similarity=0.012  Sum_probs=112.7

Q ss_pred             HHHHhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881          263 DMYAKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL  339 (498)
Q Consensus       263 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l  339 (498)
                      -.+...|+++.|+..++.+..  | |+..+......+...|+..+|.+.+++++..  .|+           .....-.+
T Consensus       314 ~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~-----------~~~l~~~~  380 (484)
T COG4783         314 LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPN-----------SPLLQLNL  380 (484)
T ss_pred             HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC-----------ccHHHHHH
Confidence            345578899999999988764  4 6677777788999999999999999999885  444           36777888


Q ss_pred             HHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881          340 VDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG  417 (498)
Q Consensus       340 ~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  417 (498)
                      .++|.+.|++.+|..++++.  ..+-|+..|..|..+|...|+..+|..                 ..+..|...|++++
T Consensus       381 a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~  443 (484)
T COG4783         381 AQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQ  443 (484)
T ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHH
Confidence            99999999999999999998  434489999999999999999877665                 44567778899999


Q ss_pred             HHHHHHhhhhCC
Q 010881          418 VEKVRRGMEDNE  429 (498)
Q Consensus       418 a~~~~~~m~~~~  429 (498)
                      |...+....+..
T Consensus       444 A~~~l~~A~~~~  455 (484)
T COG4783         444 AIIFLMRASQQV  455 (484)
T ss_pred             HHHHHHHHHHhc
Confidence            999988887653

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.16  E-value=4.3e-06  Score=48.71  Aligned_cols=34  Identities=32%  Similarity=0.581  Sum_probs=29.5

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN  219 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  219 (498)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3688899999999999999999999988888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.15  E-value=0.0011  Score=68.30  Aligned_cols=217  Identities=9%  Similarity=-0.008  Sum_probs=99.2

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHH-HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS-FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL  130 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  130 (498)
                      +...|..|+..+...+++++|.++.+...+  ..|+...+- .+...+.+.++.+.+..+  .+               +
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~---------------l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NL---------------I   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hh---------------h
Confidence            455666677777677777777777775555  334443322 222234444444433333  11               1


Q ss_pred             HHHHhCCChhhHHHHhhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHH
Q 010881          131 HLYATCNCMDPARKLFDMSVN--RDVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEAL  205 (498)
Q Consensus       131 ~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~  205 (498)
                      .......++..+..+.+.+..  .+..++-.+..+|-+.|+.++|..+++++.+   .|+.+.|.+...|... ++++|.
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~  169 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI  169 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence            112222222111111111111  1222444555555555555555555555543   2445555555555555 555555


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC
Q 010881          206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD  285 (498)
Q Consensus       206 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  285 (498)
                      +++.+.+..               +...+++..+..+|..+.... +.+...+-.+.+.....-..           .+-
T Consensus       170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f~~i~~ki~~~~~~-----------~~~  222 (906)
T PRK14720        170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFFLRIERKVLGHREF-----------TRL  222 (906)
T ss_pred             HHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHHHHHHHHHHhhhcc-----------chh
Confidence            555554432               334445555555555555443 22222222222221111001           122


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881          286 VFAYTSLISGLANHDQSASAIELFMRMQLE  315 (498)
Q Consensus       286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  315 (498)
                      +.++--+-..|-..++++++..+++.+++.
T Consensus       223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~  252 (906)
T PRK14720        223 VGLLEDLYEPYKALEDWDEVIYILKKILEH  252 (906)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHHHHhc
Confidence            334444445566666677777777776653

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.09  E-value=6.6e-06  Score=47.55  Aligned_cols=33  Identities=21%  Similarity=0.381  Sum_probs=26.8

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP  218 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p  218 (498)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888776

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.09  E-value=0.00012  Score=58.46  Aligned_cols=103  Identities=13%  Similarity=0.080  Sum_probs=86.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +......+...+...|++++|...|+.+...+  |+           +...+..+...+...|++++|...+++. ...|
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD--PY-----------NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--CC-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            34445566677888999999999999987742  33           5788999999999999999999999988 4445


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG  400 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  400 (498)
                       +...+..+...+...|++++|...++++++..|++..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence             6778888888999999999999999999999998865

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.07  E-value=0.00014  Score=68.12  Aligned_cols=122  Identities=12%  Similarity=0.047  Sum_probs=75.8

Q ss_pred             HHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881          159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ  238 (498)
Q Consensus       159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  238 (498)
                      .|+..+...++++.|+.+|+++.+.++.....++..+...++-.+|.+++++..... +-+...+..-...+.+.++++.
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence            444555556677777777777766655556666666666667777777777766531 2233344444445556666666


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881          239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP  282 (498)
Q Consensus       239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  282 (498)
                      |..+.+++.+.. +.+-.+|..|..+|.+.|+++.|+..++.++
T Consensus       253 AL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  253 ALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            666666666653 3444566667777777777777766666655

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.05  E-value=6.2e-05  Score=58.52  Aligned_cols=96  Identities=11%  Similarity=0.005  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHH
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDH---EGVHVLL  405 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l  405 (498)
                      .++..++..+.+.|++++|...|+++ ...|+    ...+..+...+...|+++.|...++.+....|++   +.++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            46777888999999999999999998 33343    3466778889999999999999999999988875   4568889


Q ss_pred             HHHhHhcCCcchHHHHHHhhhhCC
Q 010881          406 SNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       406 ~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      +.++.+.|++++|...++++.+..
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHC
Confidence            999999999999999999998764

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.05  E-value=4.9e-05  Score=56.08  Aligned_cols=94  Identities=15%  Similarity=0.080  Sum_probs=81.5

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881          335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      ++..+...+...|++++|...+++. ...| +...+..+...+...+++++|.+.++.+....|.+...+..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            3566788888999999999999987 4445 4567778888899999999999999999999999888899999999999


Q ss_pred             CCcchHHHHHHhhhhC
Q 010881          413 EQWNGVEKVRRGMEDN  428 (498)
Q Consensus       413 g~~~~a~~~~~~m~~~  428 (498)
                      |++++|...++...+.
T Consensus        82 ~~~~~a~~~~~~~~~~   97 (100)
T cd00189          82 GKYEEALEAYEKALEL   97 (100)
T ss_pred             HhHHHHHHHHHHHHcc
Confidence            9999999999887653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.04  E-value=0.00085  Score=57.06  Aligned_cols=185  Identities=14%  Similarity=0.031  Sum_probs=139.2

Q ss_pred             cCChHHHHHHHHHHHHh---C-CCCChh-HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHH-HHHHHhcCChHH
Q 010881          233 LGALDQGRWIHAYVDRN---G-IELDII-LGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSL-ISGLANHDQSAS  304 (498)
Q Consensus       233 ~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~~~~~~  304 (498)
                      ..+.++..+++..+...   | ..++.. ++..++-+...+|+.+.|..+++.+..  |+..-...| ..-+-..|++++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence            34677777777776542   3 344443 445666677789999999999988765  322211111 112445789999


Q ss_pred             HHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHH
Q 010881          305 AIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVD  382 (498)
Q Consensus       305 a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~  382 (498)
                      |+++++.+++.+  |+           |..++---+...-..|+--+|++-+.+.  .+..|...|.-+...|...|+++
T Consensus       105 A~e~y~~lL~dd--pt-----------~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~  171 (289)
T KOG3060|consen  105 AIEYYESLLEDD--PT-----------DTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFE  171 (289)
T ss_pred             HHHHHHHHhccC--cc-----------hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHH
Confidence            999999999864  43           5677777777777788888888888777  56679999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC---cchHHHHHHhhhhCCc
Q 010881          383 LGKETVESLVERSLDHEGVHVLLSNIYASTEQ---WNGVEKVRRGMEDNEV  430 (498)
Q Consensus       383 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~m~~~~~  430 (498)
                      +|.-.+++++=..|.++..+..++..+.-.|-   ..-|.++|.+..+...
T Consensus       172 kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  172 KAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            99999999999999999888899998877664   4567888888877544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.04  E-value=3.2e-05  Score=67.24  Aligned_cols=87  Identities=11%  Similarity=0.059  Sum_probs=79.4

Q ss_pred             HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchH
Q 010881          341 DLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV  418 (498)
Q Consensus       341 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  418 (498)
                      .-+.+.+++.+|+..|.+. .+.| |++.|..-..+|.+.|.++.|.+-.+.++..+|....+|..|+.+|...|++++|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            4566889999999999998 7777 7888888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhh
Q 010881          419 EKVRRGMED  427 (498)
Q Consensus       419 ~~~~~~m~~  427 (498)
                      ++.|++..+
T Consensus       169 ~~aykKaLe  177 (304)
T KOG0553|consen  169 IEAYKKALE  177 (304)
T ss_pred             HHHHHhhhc
Confidence            999977754

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.03  E-value=5.6e-06  Score=59.78  Aligned_cols=78  Identities=17%  Similarity=0.226  Sum_probs=64.8

Q ss_pred             cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881          346 AGMLEAAKKVVREM-PIEP---DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV  421 (498)
Q Consensus       346 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  421 (498)
                      .|++++|+.+++++ ...|   +...+..+..+|.+.|++++|..++++ .+.+|.+......++.++.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            58899999999998 3233   455666689999999999999999999 777787777777889999999999999999


Q ss_pred             HHh
Q 010881          422 RRG  424 (498)
Q Consensus       422 ~~~  424 (498)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            975

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=0.0007  Score=61.58  Aligned_cols=270  Identities=12%  Similarity=-0.037  Sum_probs=121.0

Q ss_pred             HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCC---CChhhHHHHHHHHHccCCHHHHH
Q 010881           98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVN---RDVISWTSLINGYAKSGQISIAR  174 (498)
Q Consensus        98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~  174 (498)
                      +.+..++..|+..+...++.++. +..-|..-+..+...|++++|.--.++-++   .....+.-.-.++...++..+|.
T Consensus        59 ~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~  137 (486)
T KOG0550|consen   59 FYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAE  137 (486)
T ss_pred             HHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHH
Confidence            33445556666666666666543 233344444444455555555433332221   12222333333444444455555


Q ss_pred             HHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCC
Q 010881          175 QMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTA-CAFLGALDQGRWIHAYVDRNGIE  252 (498)
Q Consensus       175 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~  252 (498)
                      +.|+     +...|           ....++..++....... +|...++..+-.- +...++.++|.+.--.+.+.. .
T Consensus       138 ~~~~-----~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~  200 (486)
T KOG0550|consen  138 EKLK-----SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-A  200 (486)
T ss_pred             HHhh-----hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-c
Confidence            5444     11111           11222222222222211 2333344333222 244566666666555554433 1


Q ss_pred             CChhHHHHHHH--HHHhcCCHHHHHHHHhhCCCCChhH---------------HHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881          253 LDIILGTAIID--MYAKCGCIETACSVFDSMPNRDVFA---------------YTSLISGLANHDQSASAIELFMRMQLE  315 (498)
Q Consensus       253 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~---------------~~~li~~~~~~~~~~~a~~~~~~m~~~  315 (498)
                        ...+..+++  ++.-.++.+.|...|++...-++..               |..=..-..+.|++.+|.+.|.+.+. 
T Consensus       201 --~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~-  277 (486)
T KOG0550|consen  201 --TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN-  277 (486)
T ss_pred             --chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc-
Confidence              122222222  2233556667777776665422211               11112223455666666666666543 


Q ss_pred             CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       316 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                       +.|+       ..+|+...|.....+..+.|+..+|+.-.++. .+.|. ...|..-..++...+++++|.+-|+.+.+
T Consensus       278 -idP~-------n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  278 -IDPS-------NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             -CCcc-------ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             4554       45555566666666666666666666555554 33221 12222222344445556666666666555


Q ss_pred             cCC
Q 010881          394 RSL  396 (498)
Q Consensus       394 ~~~  396 (498)
                      ...
T Consensus       350 ~~~  352 (486)
T KOG0550|consen  350 LEK  352 (486)
T ss_pred             hcc
Confidence            443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.02  E-value=0.00015  Score=56.28  Aligned_cols=107  Identities=18%  Similarity=0.105  Sum_probs=85.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-  364 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-  364 (498)
                      .++..++..+...|++++|...|.++....  |+.        ......+..+..++.+.|++++|...|+++ ...|+ 
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~   72 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY--PKS--------TYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKS   72 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCc--------cccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCC
Confidence            356677788899999999999999998752  321        112456777999999999999999999988 33343 


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881          365 ---NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV  403 (498)
Q Consensus       365 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  403 (498)
                         ..++..+..++...|+.++|...++++++..|+++.+..
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence               556778888999999999999999999999999875443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.01  E-value=7.8e-05  Score=64.94  Aligned_cols=110  Identities=17%  Similarity=0.140  Sum_probs=92.8

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 010881          294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGAL  371 (498)
Q Consensus       294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l  371 (498)
                      .-+.+.+++.+|+..|.+.++  +.|+           |.+.|..-..+|.+.|.++.|++-.+.. .+.| ...+|..|
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~--l~P~-----------nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL  155 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIE--LDPT-----------NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL  155 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHh--cCCC-----------cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence            346778999999999999988  3454           7899999999999999999999998887 7777 57899999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcc
Q 010881          372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN  416 (498)
Q Consensus       372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  416 (498)
                      ..+|...|++++|++.|+++++++|++......|-.+--+.+..+
T Consensus       156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999866666655544444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.99  E-value=1.8e-05  Score=54.61  Aligned_cols=64  Identities=13%  Similarity=0.009  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC-CcchHHHHHHhhhh
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE-QWNGVEKVRRGMED  427 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~  427 (498)
                      ++.+|..+...+...|++++|+..|+++++.+|+++.++..++.++...| ++++|++.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            46678888889999999999999999999999999999999999999999 79999999987765

...

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.97  E-value=0.00018  Score=67.53  Aligned_cols=106  Identities=14%  Similarity=0.077  Sum_probs=90.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010881          293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGA  370 (498)
Q Consensus       293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  370 (498)
                      .......|++++|+..|+++++.  .|+           +...|..+..+|...|++++|+..++++ .+.| +...|..
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~--~P~-----------~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~   75 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDL--DPN-----------NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLR   75 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHH
Confidence            44567789999999999999884  444           5788999999999999999999999998 6566 6778888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      +..+|...|++++|+..|+++++++|+++.+...+..+..+
T Consensus        76 lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         76 KGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998877766555433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.94  E-value=0.03  Score=56.43  Aligned_cols=211  Identities=13%  Similarity=0.086  Sum_probs=137.6

Q ss_pred             CChhHHHHHhhhcCCCCc-chHHHHHHHH--HhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHH
Q 010881           36 GDLSHGYRLFVCLQYRTT-FIWNTMIRGF--AEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHA  112 (498)
Q Consensus        36 g~~~~A~~~~~~~~~~~~-~~~~~li~~~--~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~  112 (498)
                      +++..|....+++.++.+ ..|..++.++  .+.|+.++|..+++.....+.. |..|...+-.+|.+.+..++|..+|+
T Consensus        23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye  101 (932)
T KOG2053|consen   23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYE  101 (932)
T ss_pred             HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            788888888887663322 2455555554  4789999999888887664433 77888888899999999999999999


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHhCCChhh----HHHHhhccCCCChhhHHHHHHHHHc-cCC---------HHHHHHHHh
Q 010881          113 QVIRLGWESYDFVLNGLLHLYATCNCMDP----ARKLFDMSVNRDVISWTSLINGYAK-SGQ---------ISIARQMFD  178 (498)
Q Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~li~~~~~-~~~---------~~~A~~~~~  178 (498)
                      +.....  |+......+..+|.+-+++.+    |.+++....+.--..|+. ++.+.. ...         ..-|.+.++
T Consensus       102 ~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV-~Slilqs~~~~~~~~~~i~l~LA~~m~~  178 (932)
T KOG2053|consen  102 RANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSV-ISLILQSIFSENELLDPILLALAEKMVQ  178 (932)
T ss_pred             HHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHH-HHHHHHhccCCcccccchhHHHHHHHHH
Confidence            998765  446667777888888777654    566666544444444443 333222 111         234566666


Q ss_pred             hCCCCC-----hhHHHHHHHHHHhCCCHhHHHHHHH-HHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 010881          179 KMPEKN-----AVSWSAMINGYVQVDLFKEALEHFN-YMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG  250 (498)
Q Consensus       179 ~~~~~~-----~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  250 (498)
                      .+.+.+     ..-...-...+...|++++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus       179 ~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  179 KLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            665433     1111122334456788999998884 34343333344444566667777888888888888888776

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.93  E-value=7.9e-05  Score=70.01  Aligned_cols=91  Identities=7%  Similarity=-0.026  Sum_probs=81.7

Q ss_pred             HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcc
Q 010881          339 LVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN  416 (498)
Q Consensus       339 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  416 (498)
                      -...+...|++++|++.|+++ ...| +...|..+..+|...|++++|+..++++++++|++...|..++.+|...|+++
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence            356677889999999999998 5556 67788888899999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhhhCC
Q 010881          417 GVEKVRRGMEDNE  429 (498)
Q Consensus       417 ~a~~~~~~m~~~~  429 (498)
                      +|...|++..+.+
T Consensus        88 eA~~~~~~al~l~  100 (356)
T PLN03088         88 TAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHhC
Confidence            9999998887644

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.91  E-value=0.00053  Score=55.43  Aligned_cols=120  Identities=13%  Similarity=0.130  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc-c---hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCch--hHHHHH
Q 010881           56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN-Y---TFSFILRACADTSCLFVGLICHAQVIRLGWESYD--FVLNGL  129 (498)
Q Consensus        56 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l  129 (498)
                      |..++..+ ..++...+...++.+.+..  |+. .   ..-.+...+...|++++|...|+.+......++.  .....|
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            44445444 3667777777777776632  222 1   2222345566677777777777777776533321  123334


Q ss_pred             HHHHHhCCChhhHHHHhhccCCC--ChhhHHHHHHHHHccCCHHHHHHHHh
Q 010881          130 LHLYATCNCMDPARKLFDMSVNR--DVISWTSLINGYAKSGQISIARQMFD  178 (498)
Q Consensus       130 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~  178 (498)
                      ..++...|++++|...++....+  ....+......+.+.|+.++|...|+
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            55555555555555555443222  12233333444444444444444443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=0.00011  Score=64.44  Aligned_cols=103  Identities=11%  Similarity=0.003  Sum_probs=88.0

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHG---DVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      |...|-.|..+|...|+++.|..-|.+. .+.| |+..+..+..++....   ...++..++++++..+|.+..+...|+
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA  234 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLA  234 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHH
Confidence            7999999999999999999999999988 4444 6667777776654332   467899999999999999999999999


Q ss_pred             HHhHhcCCcchHHHHHHhhhhCCccccC
Q 010881          407 NIYASTEQWNGVEKVRRGMEDNEVRKVP  434 (498)
Q Consensus       407 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~  434 (498)
                      ..+...|++.+|...|+.|.+.....+|
T Consensus       235 ~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         235 FAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            9999999999999999999987654333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.86  E-value=0.00021  Score=59.76  Aligned_cols=83  Identities=17%  Similarity=0.085  Sum_probs=72.1

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      ....+..+...+...|++++|...|++. ...|+    ...+..+...+...|++++|...++++++..|.+...+..++
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            4667888899999999999999999988 33332    467888889999999999999999999999999998899999


Q ss_pred             HHhHhcCC
Q 010881          407 NIYASTEQ  414 (498)
Q Consensus       407 ~~~~~~g~  414 (498)
                      .++...|+
T Consensus       114 ~~~~~~g~  121 (172)
T PRK02603        114 VIYHKRGE  121 (172)
T ss_pred             HHHHHcCC
Confidence            99988776

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.86  E-value=0.0016  Score=52.64  Aligned_cols=125  Identities=10%  Similarity=0.020  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHH
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN--HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD--IILGTAII  262 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~  262 (498)
                      .|..++..+ ..++...+...++.+......-.  ......+...+...|++++|...|+.+......++  ......+.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            344444444 46777777777777776531111  12222344556677788888888877777652222  12344566


Q ss_pred             HHHHhcCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010881          263 DMYAKCGCIETACSVFDSMPNR--DVFAYTSLISGLANHDQSASAIELFMRM  312 (498)
Q Consensus       263 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m  312 (498)
                      ..+...|++++|...++....+  ....+......|...|+.++|...|++.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            7777888888888888775543  3345666677788888888888887764

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.86  E-value=0.00049  Score=57.50  Aligned_cols=114  Identities=13%  Similarity=0.080  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN  365 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~  365 (498)
                      .+..+...+...|++++|...|++.......+.          .....+..+..++.+.|++++|...+++. ...| +.
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~  106 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPN----------DRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP  106 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc----------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH
Confidence            344444445555555555555555544211110          01234455555555555555555555554 3333 33


Q ss_pred             HHHHHHHHHHHhcCC--------------HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881          366 YVLGALLNACRVHGD--------------VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ  414 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  414 (498)
                      ..+..+...+...|+              +++|.++++++++.+|++   +..+...+...|+
T Consensus       107 ~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        107 SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            334444444444443              577888888888888776   4445555544444

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.85  E-value=3.5e-05  Score=52.43  Aligned_cols=58  Identities=17%  Similarity=0.161  Sum_probs=44.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +...+...|++++|++.|+++++..|+++..+..++.++...|++++|...|+++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4456777888888888888888888888888888888888888888888888777654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.84  E-value=0.0003  Score=51.81  Aligned_cols=81  Identities=11%  Similarity=-0.007  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHhCCCCChhH
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPNHAGIVGALTACAFLG--------ALDQGRWIHAYVDRNGIELDIIL  257 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~  257 (498)
                      +....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        ++-....+|+.|...+++|+..+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et  106 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET  106 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence            344566777778999999999999999999 999999999999987653        23456788999999999999999


Q ss_pred             HHHHHHHHHh
Q 010881          258 GTAIIDMYAK  267 (498)
Q Consensus       258 ~~~l~~~~~~  267 (498)
                      |+.++..+.+
T Consensus       107 Ynivl~~Llk  116 (120)
T PF08579_consen  107 YNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHH
Confidence            9999988765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.81  E-value=0.00036  Score=51.28  Aligned_cols=97  Identities=18%  Similarity=0.112  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN  365 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~  365 (498)
                      ++..+...+...|++++|...+++..+.  .|+           +...+..+..++...|++++|.+.+++. ...| +.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~   68 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL--DPD-----------NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA   68 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCc-----------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch
Confidence            3556777888899999999999998774  232           3477888999999999999999999987 3344 45


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      .++..+...+...|+++.|...++.+.+..|+
T Consensus        69 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          69 KAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            68888889999999999999999999887763

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.81  E-value=2.7e-05  Score=43.80  Aligned_cols=31  Identities=16%  Similarity=0.444  Sum_probs=23.5

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCC
Q 010881           54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDF   84 (498)
Q Consensus        54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~   84 (498)
                      ++||.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3677888888888888888888888877653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.79  E-value=3.3e-05  Score=43.41  Aligned_cols=30  Identities=40%  Similarity=0.760  Sum_probs=22.7

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCG  215 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  215 (498)
                      ++|++++++|++.|++++|.++|++|.+.|
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            367777777777777777777777777765

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.77  E-value=0.0023  Score=58.21  Aligned_cols=99  Identities=15%  Similarity=0.094  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh-HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP--  363 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--  363 (498)
                      ++..+...+.+.|++++|..+|++........+       ....+. ..|...+-++...||+..|...+++. ...|  
T Consensus       157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~-------l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENN-------LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC-------TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc-------ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            455567788889999999999999877532221       112222 23445556777789999999999886 3333  


Q ss_pred             --C--HHHHHHHHHHHHhc--CCHHHHHHHHHHHHh
Q 010881          364 --D--NYVLGALLNACRVH--GDVDLGKETVESLVE  393 (498)
Q Consensus       364 --~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~  393 (498)
                        +  ......|+.+|-..  ..++.+..-|+.+..
T Consensus       230 ~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  230 ASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             TTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             CCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence              2  34556667766432  245555555554443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.77  E-value=9.3e-05  Score=50.29  Aligned_cols=61  Identities=18%  Similarity=0.108  Sum_probs=53.0

Q ss_pred             HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          339 LVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       339 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      +...+...|++++|...|+++ ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            567888999999999999999 5567 677888899999999999999999999999999874

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.77  E-value=0.00065  Score=54.07  Aligned_cols=98  Identities=11%  Similarity=-0.026  Sum_probs=71.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +....-.+..-+...|++++|..+|+-+..-  .|.           +..-|..|.-++...|++++|+..|... .+.|
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~-----------~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~  100 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAW-----------SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI  100 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Ccc-----------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3334444555567778888888888877663  333           5677778888888888888888888877 4445


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                       |+..+-.+..++...|+.+.|++.|+.++...
T Consensus       101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        101 DAPQAPWAAAECYLACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence             67777777888888888888888888887754

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.76  E-value=0.01  Score=52.46  Aligned_cols=192  Identities=12%  Similarity=-0.001  Sum_probs=98.7

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchH----HHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHH
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTF----SFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN  127 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  127 (498)
                      +...+-.....+.+.|++++|+..|+++...  .|+...-    -.+..++.+.++++.|...+++.++..+.....-+.
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a  108 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYV  108 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHH
Confidence            3333334455566789999999999999873  3443322    345577888999999999999999987654444444


Q ss_pred             HHHHHHHhCCChhhHHHHhhccC--CCCh-------hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhC
Q 010881          128 GLLHLYATCNCMDPARKLFDMSV--NRDV-------ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQV  198 (498)
Q Consensus       128 ~l~~~~~~~g~~~~a~~~~~~~~--~~~~-------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  198 (498)
                      ..+.+.+..........-+....  ..|.       ..+..++.-|=.+.-..+|...+..+...-...--.+...|.+.
T Consensus       109 ~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~  188 (243)
T PRK10866        109 LYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKR  188 (243)
T ss_pred             HHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            44433331100000000000000  0011       12233333333333344444443333322111222345566777


Q ss_pred             CCHhHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010881          199 DLFKEALEHFNYMQLC--GFRPNHAGIVGALTACAFLGALDQGRWIHAY  245 (498)
Q Consensus       199 g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  245 (498)
                      |.+..|..-++.+.+.  +.+........+..++...|..++|..+...
T Consensus       189 ~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        189 GAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             CchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            7777777777777654  1222233444555555555655555554443

>PRK15331 chaperone protein SicA; Provisional

Probab=97.75  E-value=0.00062  Score=54.43  Aligned_cols=94  Identities=6%  Similarity=-0.041  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      ...-....-+...|++++|..+|+-+ -..| +..-|..|..+|...+++++|...|..+..++++++.++...+..+..
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            33444555667899999999999988 3334 666788888899999999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHhhhh
Q 010881          412 TEQWNGVEKVRRGMED  427 (498)
Q Consensus       412 ~g~~~~a~~~~~~m~~  427 (498)
                      .|+.+.|...|+...+
T Consensus       118 l~~~~~A~~~f~~a~~  133 (165)
T PRK15331        118 MRKAAKARQCFELVNE  133 (165)
T ss_pred             hCCHHHHHHHHHHHHh
Confidence            9999999999987765

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.72  E-value=0.00046  Score=65.06  Aligned_cols=119  Identities=9%  Similarity=0.067  Sum_probs=78.3

Q ss_pred             CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC-CC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc
Q 010881           16 TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-YR-----TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY   89 (498)
Q Consensus        16 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~   89 (498)
                      .+-+......+++.+...  .+++.+..++-+.. .|     -..+..++|+.|.+.|..+.++.+++.=...|+-||.+
T Consensus        62 ~~vS~~dld~fvn~~~~~--~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESK--DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             CCCcHHHHHHHHhhcCCH--hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            344555566666666666  66666776665544 22     13445577777777777777777777777777777777


Q ss_pred             hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 010881           90 TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC  136 (498)
Q Consensus        90 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  136 (498)
                      +++.||..+.+.|++..|.++...|...+.-.+..|+...+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            77777777777777777777777776666555556655555555544

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.72  E-value=6.7e-05  Score=51.55  Aligned_cols=53  Identities=23%  Similarity=0.355  Sum_probs=43.9

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ...|++++|++.|+++++..|++..+...++.+|.+.|++++|.++++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46788888888898888888888888888888888889998888888777654

...

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.71  E-value=0.0015  Score=64.24  Aligned_cols=138  Identities=11%  Similarity=0.002  Sum_probs=86.0

Q ss_pred             CCChhHHHHHHHHHHhc-----CCHHHHHHHHhhCCC--CC-hhHHHHHHHHHHhcC--------ChHHHHHHHHHHHHc
Q 010881          252 ELDIILGTAIIDMYAKC-----GCIETACSVFDSMPN--RD-VFAYTSLISGLANHD--------QSASAIELFMRMQLE  315 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~--------~~~~a~~~~~~m~~~  315 (498)
                      +.+...|...+++....     ++.+.|..+|++..+  |+ ...|..+..++....        +...+.+...+....
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al  413 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL  413 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence            55666777776664332     236677777777764  32 234444333332211        122333333332222


Q ss_pred             CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881          316 GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVER  394 (498)
Q Consensus       316 ~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  394 (498)
                      ...           ..+...|..+.......|++++|...++++ .+.|+...|..+...+...|+.++|.+.++++..+
T Consensus       414 ~~~-----------~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        414 PEL-----------NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             ccC-----------cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            111           224567777766666778888888888887 66778888888888888888888888888888888


Q ss_pred             CCCCch
Q 010881          395 SLDHEG  400 (498)
Q Consensus       395 ~~~~~~  400 (498)
                      +|.++.
T Consensus       483 ~P~~pt  488 (517)
T PRK10153        483 RPGENT  488 (517)
T ss_pred             CCCCch
Confidence            888774

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.67  E-value=0.00061  Score=56.69  Aligned_cols=94  Identities=15%  Similarity=-0.043  Sum_probs=78.3

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN  407 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  407 (498)
                      ...|..++..+...|++++|...|++. ...|+    ..+|..+...+...|++++|+..++++++..|.....+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            567788888889999999999999988 33333    3578889999999999999999999999999998888888888


Q ss_pred             HhH-------hcCCcchHHHHHHhhh
Q 010881          408 IYA-------STEQWNGVEKVRRGME  426 (498)
Q Consensus       408 ~~~-------~~g~~~~a~~~~~~m~  426 (498)
                      ++.       ..|++++|...+++..
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~  140 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAA  140 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHH
Confidence            888       7888887766665543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.67  E-value=0.00098  Score=60.38  Aligned_cols=131  Identities=12%  Similarity=0.130  Sum_probs=94.2

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh---HHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881          256 ILGTAIIDMYAKCGCIETACSVFDSMPNRDVF---AYTSLISG-LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP  331 (498)
Q Consensus       256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~  331 (498)
                      .+|..+++..-+.+..+.|..+|.++.+....   .|-..... |...++.+.|..+|+..++.             +..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-------------f~~   68 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-------------FPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-------------HTT
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------------CCC
Confidence            36677777777777788888888877654332   33333333 23356666699999998874             233


Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDN----YVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      +...|...++.+.+.|+.+.|..+|++. ..-|..    ..|..++..-.+.|+.+....+.+++.+.-|++.
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            6788888999999999999999999987 323333    5899999999999999999999999999887754

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.66  E-value=0.00048  Score=50.77  Aligned_cols=80  Identities=18%  Similarity=0.125  Sum_probs=67.6

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhHHCCC-CCCcchHHHHHHHHHccC--------CcHHHHHHHHHHHHhCCCCchhHH
Q 010881           56 WNTMIRGFAEKNEPIKAFALYKQMLRSDF-LPNNYTFSFILRACADTS--------CLFVGLICHAQVIRLGWESYDFVL  126 (498)
Q Consensus        56 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~  126 (498)
                      -...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+-..+.+|+.|+..+++|+..+|
T Consensus        28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY  107 (120)
T PF08579_consen   28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY  107 (120)
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence            34556677778999999999999999999 899999999999877653        345667889999999999999999


Q ss_pred             HHHHHHHHh
Q 010881          127 NGLLHLYAT  135 (498)
Q Consensus       127 ~~l~~~~~~  135 (498)
                      +.++..+.+
T Consensus       108 nivl~~Llk  116 (120)
T PF08579_consen  108 NIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHH
Confidence            999987765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.63  E-value=0.0022  Score=53.36  Aligned_cols=117  Identities=12%  Similarity=0.043  Sum_probs=75.1

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 010881          286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-  363 (498)
Q Consensus       286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-  363 (498)
                      ...|..+...+...|++++|+..|++.....  |+.        .....++..+..++...|++++|...+++. .+.| 
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~--------~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~  104 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDP--------YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF  104 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccc--------hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            4456667777778888888888888887642  220        012457888888888899999999888887 4444 


Q ss_pred             CHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881          364 DNYVLGALLNACR-------VHGDVD-------LGKETVESLVERSLDHEGVHVLLSNIYASTEQW  415 (498)
Q Consensus       364 ~~~~~~~l~~~~~-------~~g~~~-------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  415 (498)
                      ...++..+...+.       ..|+++       +|..++++++...|++.   ......+...|++
T Consensus       105 ~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~  167 (168)
T CHL00033        105 LPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF  167 (168)
T ss_pred             cHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence            4555666666665       677766       45555555666666543   3333334444443

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.62  E-value=0.053  Score=49.85  Aligned_cols=25  Identities=12%  Similarity=0.021  Sum_probs=18.0

Q ss_pred             HHHHHHHhhcCCCCChhHHHHHhhhcC
Q 010881           23 VGKIIGFCSASDIGDLSHGYRLFVCLQ   49 (498)
Q Consensus        23 ~~~l~~~~~~~~~g~~~~A~~~~~~~~   49 (498)
                      |..+...-...  |+..-|..+++.=+
T Consensus         3 ~a~IA~~A~~~--GR~~LA~~LL~~Ep   27 (319)
T PF04840_consen    3 YAEIARKAYEE--GRPKLATKLLELEP   27 (319)
T ss_pred             HHHHHHHHHHc--ChHHHHHHHHHcCC
Confidence            45556666667  99999999888544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.60  E-value=0.00014  Score=50.08  Aligned_cols=65  Identities=17%  Similarity=0.122  Sum_probs=58.5

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHG-DVDLGKETVESLVERSL  396 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~  396 (498)
                      +..+|..+...+...|++++|+..|++. .+.| +...|..+..+|...| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4678999999999999999999999998 5556 6778888999999999 79999999999999887

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.60  E-value=0.061  Score=50.12  Aligned_cols=121  Identities=12%  Similarity=0.074  Sum_probs=75.7

Q ss_pred             HHhcCC-hHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc---CCHHHH---HHHHHhCCCCC----C
Q 010881          296 LANHDQ-SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA---GMLEAA---KKVVREMPIEP----D  364 (498)
Q Consensus       296 ~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A---~~~~~~~~~~p----~  364 (498)
                      +-+.|. -++|+.+++.+++-  .|.+       +.....++..+=.+|..+   ..+.+-   ...+++.|+.|    +
T Consensus       389 lW~~g~~dekalnLLk~il~f--t~yD-------~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e  459 (549)
T PF07079_consen  389 LWEIGQCDEKALNLLKLILQF--TNYD-------IECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISE  459 (549)
T ss_pred             HHhcCCccHHHHHHHHHHHHh--cccc-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccH
Confidence            444555 77888999888763  3331       111112222222233221   122222   22233446555    3


Q ss_pred             HHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          365 NYVLGALLNA--CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       365 ~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      ...-|.|..|  +..+|++.++.-.-.-+.+..| ++.+|..++-.+....++++|..+++.+.
T Consensus       460 ~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  460 EEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            3345555554  5778999999988888888899 67799999999999999999999997764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.58  E-value=0.00018  Score=50.17  Aligned_cols=57  Identities=9%  Similarity=0.007  Sum_probs=47.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ..|...++++.|.+++++++..+|+++..+...+.++...|++++|.+.+++..+.+
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~   59 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS   59 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence            467788888888888888888888888888888888888888888888888887554

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.58  E-value=0.013  Score=53.42  Aligned_cols=211  Identities=13%  Similarity=0.147  Sum_probs=114.7

Q ss_pred             HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-----cchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 010881           56 WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN-----NYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL  130 (498)
Q Consensus        56 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  130 (498)
                      |+.....|...+++++|.+.|.+........+     ...|......+. ..+++.|...+++.               +
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A---------------~  101 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKA---------------I  101 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHH---------------H
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHH---------------H
Confidence            34456677778888888888877643211100     011222222222 22555555444444               3


Q ss_pred             HHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHcc-CCHHHHHHHHhhCC-------CC--ChhHHHHHHHHHHhCCC
Q 010881          131 HLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS-GQISIARQMFDKMP-------EK--NAVSWSAMINGYVQVDL  200 (498)
Q Consensus       131 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~  200 (498)
                      ..|...|++..|-+++.           .+...|... |+++.|++.|++..       .+  -...+..+...+.+.|+
T Consensus       102 ~~y~~~G~~~~aA~~~~-----------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~  170 (282)
T PF14938_consen  102 EIYREAGRFSQAAKCLK-----------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGR  170 (282)
T ss_dssp             HHHHHCT-HHHHHHHHH-----------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHhcCcHHHHHHHHH-----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCC
Confidence            44555555555544432           334444444 55555555555443       11  13356677788999999


Q ss_pred             HhHHHHHHHHHHHcCC-----CCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHh--CCCCC--hhHHHHHHHHHHh--c
Q 010881          201 FKEALEHFNYMQLCGF-----RPNHA-GIVGALTACAFLGALDQGRWIHAYVDRN--GIELD--IILGTAIIDMYAK--C  268 (498)
Q Consensus       201 ~~~a~~~~~~m~~~g~-----~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~--~  268 (498)
                      +++|..+|++....-.     +.+.. .|...+-++...||+..|...++.....  ++..+  ..+...|+.++-.  .
T Consensus       171 y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~  250 (282)
T PF14938_consen  171 YEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDV  250 (282)
T ss_dssp             HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-C
T ss_pred             HHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCH
Confidence            9999999999876432     22222 2333444566778999999998887654  22222  3456677777754  3


Q ss_pred             CCHHHHHHHHhhCCCCChhHHHHHH
Q 010881          269 GCIETACSVFDSMPNRDVFAYTSLI  293 (498)
Q Consensus       269 g~~~~A~~~~~~~~~~~~~~~~~li  293 (498)
                      ..++.|..-|+.+.+-|..--..|+
T Consensus       251 e~f~~av~~~d~~~~ld~w~~~~l~  275 (282)
T PF14938_consen  251 EAFTEAVAEYDSISRLDNWKTKMLL  275 (282)
T ss_dssp             CCHHHHCHHHTTSS---HHHHHHHH
T ss_pred             HHHHHHHHHHcccCccHHHHHHHHH
Confidence            4688888888888876665444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.58  E-value=9.2e-05  Score=50.88  Aligned_cols=63  Identities=19%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          344 GRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       344 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      ...|++++|.++|+++ ...| +...+..+..+|.+.|++++|.++++++....|+++..+..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a   66 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA   66 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence            4689999999999998 4455 7888888999999999999999999999999999865555544

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.53  E-value=0.0015  Score=50.07  Aligned_cols=90  Identities=17%  Similarity=0.017  Sum_probs=73.8

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CchHHHHHHHH
Q 010881          337 GCLVDLLGRAGMLEAAKKVVREM---PIEPD--NYVLGALLNACRVHGDVDLGKETVESLVERSLD---HEGVHVLLSNI  408 (498)
Q Consensus       337 ~~l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~  408 (498)
                      ..+..++-..|+.++|+.+|++.   +....  ...+-.+.+.+...|++++|..+++......|+   +......++-+
T Consensus         5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~   84 (120)
T PF12688_consen    5 YELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALA   84 (120)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHH
Confidence            34567788899999999999987   43332  446677888999999999999999999998888   56667778889


Q ss_pred             hHhcCCcchHHHHHHhhh
Q 010881          409 YASTEQWNGVEKVRRGME  426 (498)
Q Consensus       409 ~~~~g~~~~a~~~~~~m~  426 (498)
                      +...|+.++|++.+-...
T Consensus        85 L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   85 LYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHCCCHHHHHHHHHHHH
Confidence            999999999999875544

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.52  E-value=0.0008  Score=61.14  Aligned_cols=99  Identities=13%  Similarity=-0.101  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--------  359 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------  359 (498)
                      .+..|..++.-.|+++.|.+.|+.....-+...       .-........+|...|.-..++++|+.++++-        
T Consensus       237 A~sNlgN~hiflg~fe~A~ehYK~tl~LAielg-------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~  309 (639)
T KOG1130|consen  237 AHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG-------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELE  309 (639)
T ss_pred             hhcccchhhhhhcccHhHHHHHHHHHHHHHHhc-------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555555544332211111       00112344556677777777777787776653        


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          360 PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       360 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                      ...-....+.+|..++...|..++|+.+.+..++
T Consensus       310 DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  310 DRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            2223566778888888888888888888777665

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.51  E-value=0.14  Score=51.89  Aligned_cols=192  Identities=11%  Similarity=0.054  Sum_probs=127.9

Q ss_pred             hHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 010881           21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA   97 (498)
Q Consensus        21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~   97 (498)
                      ..|...+.++...+.|..++|..+++....   .|..+...+-..|...++.++|..+|++..+  ..|+......+..+
T Consensus        42 ~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~--~~P~eell~~lFma  119 (932)
T KOG2053|consen   42 ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQ--KYPSEELLYHLFMA  119 (932)
T ss_pred             cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hCCcHHHHHHHHHH
Confidence            344555555554444999999999987652   3777888899999999999999999999987  45888888889999


Q ss_pred             HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC-Ch---------hhHHHHhhccCCCC--hhh---HHHHHH
Q 010881           98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN-CM---------DPARKLFDMSVNRD--VIS---WTSLIN  162 (498)
Q Consensus        98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~---------~~a~~~~~~~~~~~--~~~---~~~li~  162 (498)
                      |.+.+++.+-.++--++-+.-+ .+...+=++++.+...- ..         .-|.+.++.+.+.+  ..+   ...-..
T Consensus       120 yvR~~~yk~qQkaa~~LyK~~p-k~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~  198 (932)
T KOG2053|consen  120 YVREKSYKKQQKAALQLYKNFP-KRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLL  198 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-cccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHH
Confidence            9999988776666555555433 34444434555444321 11         22444555554333  111   112223


Q ss_pred             HHHccCCHHHHHHHHhh-----CCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881          163 GYAKSGQISIARQMFDK-----MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG  215 (498)
Q Consensus       163 ~~~~~~~~~~A~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  215 (498)
                      .+-..|++++|.+++..     ...-+...-+.-+..+...++|.+..++-.++...|
T Consensus       199 iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  199 ILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            34567889999998832     222344455566777888889999988888888775

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.50  E-value=0.0045  Score=60.98  Aligned_cols=134  Identities=11%  Similarity=-0.010  Sum_probs=99.0

Q ss_pred             CCChhHHHHHHHHHHhcC-----ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc--------CCH
Q 010881          283 NRDVFAYTSLISGLANHD-----QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA--------GML  349 (498)
Q Consensus       283 ~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~  349 (498)
                      ..|...|...+++.....     ....|..+|++..+.  .|+           ....|..+..++...        ++.
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~-----------~a~a~A~la~~~~~~~~~~~~~~~~l  400 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPD-----------FTYAQAEKALADIVRHSQQPLDEKQL  400 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHHHhcCCccHHHH
Confidence            357789999988754432     367899999999884  555           355566554444322        223


Q ss_pred             HHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881          350 EAAKKVVREM----PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGM  425 (498)
Q Consensus       350 ~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  425 (498)
                      ..+.+...+.    ....++..|..+...+...|++++|...++++++++|. ...|..++.++...|+.++|.+.+++.
T Consensus       401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A  479 (517)
T PRK10153        401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA  479 (517)
T ss_pred             HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555555553    12335677888877777889999999999999999995 678999999999999999999999888


Q ss_pred             hhCCc
Q 010881          426 EDNEV  430 (498)
Q Consensus       426 ~~~~~  430 (498)
                      ...+.
T Consensus       480 ~~L~P  484 (517)
T PRK10153        480 FNLRP  484 (517)
T ss_pred             HhcCC
Confidence            76543

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.50  E-value=0.0016  Score=61.46  Aligned_cols=116  Identities=9%  Similarity=0.028  Sum_probs=86.3

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010881          153 DVISWTSLINGYAKSGQISIARQMFDKMPEK------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA  226 (498)
Q Consensus       153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  226 (498)
                      +......+++.+....+++.+..++.+....      -..|..++++.|.+.|..++++.+++.=..-|+-||.++++.+
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            3344455566666666677777776666532      2345568889999999999999999888888999999999999


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 010881          227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC  268 (498)
Q Consensus       227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  268 (498)
                      +..+.+.|++..|.++...|...+...+..++...+.++.+.
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999888887777666666666555555554

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.41  E-value=0.00035  Score=50.30  Aligned_cols=48  Identities=10%  Similarity=0.070  Sum_probs=20.2

Q ss_pred             CCCHhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010881          198 VDLFKEALEHFNYMQLCGFR-PNHAGIVGALTACAFLGALDQGRWIHAY  245 (498)
Q Consensus       198 ~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~  245 (498)
                      .|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34555555555555543211 1222222334444444444444444444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.39  E-value=0.012  Score=47.71  Aligned_cols=131  Identities=11%  Similarity=0.082  Sum_probs=101.0

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 010881          284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE  362 (498)
Q Consensus       284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  362 (498)
                      |++..--.|..+....|+..+|...|.+... |+..+           |....-.+.++....+++.+|...++++ ...
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~-----------d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAH-----------DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCC-----------CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            4555566678888999999999999998765 33333           6778888889999999999999999987 222


Q ss_pred             C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          363 P---DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       363 p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      |   ++.+...+.+.+...|++.+|+..|+.++...|+.. .-......+.++|+.+++..-+..+.+
T Consensus       155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            2   233445577889999999999999999999888754 556677888999998888765555443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.34  E-value=0.0013  Score=54.88  Aligned_cols=101  Identities=13%  Similarity=0.035  Sum_probs=82.2

Q ss_pred             hhHHHHHhhhc--CCCCcchHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc---------
Q 010881           38 LSHGYRLFVCL--QYRTTFIWNTMIRGFAEK-----NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT---------  101 (498)
Q Consensus        38 ~~~A~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---------  101 (498)
                      +..-...|+..  ..+|..+|..+++.|.+.     |..+-....+..|.+.|+.-|..+|+.||+.+=+.         
T Consensus        30 l~~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ  109 (228)
T PF06239_consen   30 LAPHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQ  109 (228)
T ss_pred             ccchHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHH
Confidence            44455667766  467888999999988754     66777788889999999999999999999987543         


Q ss_pred             -------CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881          102 -------SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC  138 (498)
Q Consensus       102 -------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  138 (498)
                             .+-+.|.+++++|...|+-||..++..+++.+.+.+.
T Consensus       110 ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  110 AEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                   2457789999999999999999999999999876654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.023  Score=52.11  Aligned_cols=264  Identities=10%  Similarity=-0.078  Sum_probs=136.4

Q ss_pred             HHHHHHhCCCchHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC
Q 010881           59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNY-TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN  137 (498)
Q Consensus        59 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  137 (498)
                      ....+-+..++..|+..+....+..  |+.. -|..-+..+...|+++.+.--.+.-++.... ....+.-.-+++...+
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS  131 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence            3445666778888888888888744  4433 3444445555566666666555444443211 1122333334444444


Q ss_pred             ChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCC-----CChhHHHHH-HHHHHhCCCHhHHHHHHHHH
Q 010881          138 CMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE-----KNAVSWSAM-INGYVQVDLFKEALEHFNYM  211 (498)
Q Consensus       138 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m  211 (498)
                      +..+|.+.++.     ...|           ....|+..++....     |...+|..+ ..++.-.|++++|.+.--..
T Consensus       132 ~~i~A~~~~~~-----~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i  195 (486)
T KOG0550|consen  132 DLIEAEEKLKS-----KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI  195 (486)
T ss_pred             HHHHHHHHhhh-----hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence            55555544431     0000           01111111221111     111222222 12344445555555554444


Q ss_pred             HHcCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHhCCCCChh-------------HHHHHHHHHHhcCCHHHHHH
Q 010881          212 QLCGFRPNHAGIVGALTA--CAFLGALDQGRWIHAYVDRNGIELDII-------------LGTAIIDMYAKCGCIETACS  276 (498)
Q Consensus       212 ~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~  276 (498)
                      ++..  ++ ..+...+++  +...++.+.+...|++.+..+  |+..             .+..=.+-..+.|.+..|.+
T Consensus       196 lkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E  270 (486)
T KOG0550|consen  196 LKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE  270 (486)
T ss_pred             Hhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence            4321  11 111222222  223344555555555544332  2211             11112244568899999999


Q ss_pred             HHhhCCC-------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH
Q 010881          277 VFDSMPN-------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML  349 (498)
Q Consensus       277 ~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  349 (498)
                      .|.+...       ++...|-.......+.|+..+|+.--++.....  |.           -...|..-..++...+++
T Consensus       271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD--~s-----------yikall~ra~c~l~le~~  337 (486)
T KOG0550|consen  271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID--SS-----------YIKALLRRANCHLALEKW  337 (486)
T ss_pred             HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC--HH-----------HHHHHHHHHHHHHHHHHH
Confidence            9998875       344567777777888999999999888876631  11           123333334566677899


Q ss_pred             HHHHHHHHhC
Q 010881          350 EAAKKVVREM  359 (498)
Q Consensus       350 ~~A~~~~~~~  359 (498)
                      ++|.+-+++.
T Consensus       338 e~AV~d~~~a  347 (486)
T KOG0550|consen  338 EEAVEDYEKA  347 (486)
T ss_pred             HHHHHHHHHH
Confidence            9999999887

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.32  E-value=0.13  Score=47.28  Aligned_cols=278  Identities=13%  Similarity=0.102  Sum_probs=123.9

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 010881           55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYA  134 (498)
Q Consensus        55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  134 (498)
                      +|..+.......|+.+.|..+++.      .|+..-   =+..+...|+.+.|   +.+..+.| .|| .+|..|+..-.
T Consensus         2 S~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~---qVplLL~m~e~e~A---L~kAi~Sg-D~D-Li~~vLl~L~~   67 (319)
T PF04840_consen    2 SYAEIARKAYEEGRPKLATKLLEL------EPRASK---QVPLLLKMGEDELA---LNKAIESG-DTD-LIYLVLLHLKR   67 (319)
T ss_pred             CHHHHHHHHHHcChHHHHHHHHHc------CCChHH---HHHHHhcCCchHHH---HHHHHHcC-Ccc-HHHHHHHHHHH
Confidence            567777777788999998887653      344322   23344556666555   44555555 222 34444544333


Q ss_pred             hCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc
Q 010881          135 TCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC  214 (498)
Q Consensus       135 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  214 (498)
                      +.. ...-..++    ...+.+ ..+...|++..+.+.-..+|.+-.+........+-.++.. .+.+.-...+....+.
T Consensus        68 ~l~-~s~f~~il----~~~p~a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~a~~~  140 (319)
T PF04840_consen   68 KLS-LSQFFKIL----NQNPVA-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQAQKL  140 (319)
T ss_pred             hCC-HHHHHHHH----HhCcch-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence            322 11111121    112222 2344456666666666666554333222222222222222 3333322222222210


Q ss_pred             -CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH----HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHH
Q 010881          215 -GFRPNHAGIVGALTACAFLGALDQGRWIHAYVD----RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAY  289 (498)
Q Consensus       215 -g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  289 (498)
                       +-..+......+         .++-.++++.-.    +.+......+.+..+.-+...|+...|.++-.+..-|+-..|
T Consensus       141 y~~~k~~~f~~~~---------~e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw  211 (319)
T PF04840_consen  141 YSKSKNDAFEAKL---------IEEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFW  211 (319)
T ss_pred             HHhcchhHHHHHH---------HHHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHH
Confidence             000010111111         111111211110    111111122233334444555666666666666655666666


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 010881          290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG  369 (498)
Q Consensus       290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~  369 (498)
                      -..+.+++..+++++-..+...   . -              ++..|..++.+|.+.|+..+|..++.+++       +.
T Consensus       212 ~lki~aLa~~~~w~eL~~fa~s---k-K--------------sPIGyepFv~~~~~~~~~~eA~~yI~k~~-------~~  266 (319)
T PF04840_consen  212 WLKIKALAENKDWDELEKFAKS---K-K--------------SPIGYEPFVEACLKYGNKKEASKYIPKIP-------DE  266 (319)
T ss_pred             HHHHHHHHhcCCHHHHHHHHhC---C-C--------------CCCChHHHHHHHHHCCCHHHHHHHHHhCC-------hH
Confidence            6666666666666655543321   1 0              23455556666666666666666665532       12


Q ss_pred             HHHHHHHhcCCHHHHHHH
Q 010881          370 ALLNACRVHGDVDLGKET  387 (498)
Q Consensus       370 ~l~~~~~~~g~~~~A~~~  387 (498)
                      .-+..|.+.|++.+|.+.
T Consensus       267 ~rv~~y~~~~~~~~A~~~  284 (319)
T PF04840_consen  267 ERVEMYLKCGDYKEAAQE  284 (319)
T ss_pred             HHHHHHHHCCCHHHHHHH
Confidence            334455555665555543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.29  E-value=0.0084  Score=54.37  Aligned_cols=128  Identities=13%  Similarity=0.013  Sum_probs=96.6

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA-CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM  264 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  264 (498)
                      .+|..+++..-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            467888888888888999999999998543 2233334333333 23356777799999988876 47788999999999


Q ss_pred             HHhcCCHHHHHHHHhhCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881          265 YAKCGCIETACSVFDSMPNR------DVFAYTSLISGLANHDQSASAIELFMRMQLE  315 (498)
Q Consensus       265 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  315 (498)
                      +...|+.+.|..+|++....      ....|...+.--.+.|+.+.+..+.+++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999988752      3358999999989999999999999998874

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.27  E-value=0.002  Score=57.29  Aligned_cols=96  Identities=13%  Similarity=0.032  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---hHHHH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHE---GVHVL  404 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~  404 (498)
                      ...|...+..+.+.|++++|...|+.+ ...|+    ...+..+...|...|++++|...|+.+++..|+++   .++..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            345666666667789999999999998 44454    34677788899999999999999999999888754   45666


Q ss_pred             HHHHhHhcCCcchHHHHHHhhhhC
Q 010881          405 LSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       405 l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ++.++...|++++|.+++++..+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            788899999999999999988754

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.27  E-value=0.0012  Score=45.90  Aligned_cols=64  Identities=17%  Similarity=0.131  Sum_probs=55.2

Q ss_pred             HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881          340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV  403 (498)
Q Consensus       340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  403 (498)
                      -..|.+.+++++|.++++.+ ...| +...|......+...|++++|.+.++++++..|+++....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~   67 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARA   67 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence            45788999999999999998 5556 6777778888999999999999999999999998875443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.26  E-value=0.013  Score=44.99  Aligned_cols=106  Identities=11%  Similarity=-0.003  Sum_probs=72.1

Q ss_pred             HHHHHHhCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC---ChhHHHHHHHHH
Q 010881          191 MINGYVQVDLFKEALEHFNYMQLCGFRPN--HAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL---DIILGTAIIDMY  265 (498)
Q Consensus       191 li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~  265 (498)
                      +..++-..|+.++|+.+|++....|....  ...+..+.+++...|++++|..+++...... +.   +..+...+.-++
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence            45567788999999999999988886655  3355667777888899999999998877652 21   222233334466


Q ss_pred             HhcCCHHHHHHHHhhCCCCChhHHHHHHHHHH
Q 010881          266 AKCGCIETACSVFDSMPNRDVFAYTSLISGLA  297 (498)
Q Consensus       266 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~  297 (498)
                      ...|+.++|.+.+-....++...|..-|..|.
T Consensus        86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~ya  117 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEALAETLPRYRRAIRFYA  117 (120)
T ss_pred             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77889998888876655444445554444443

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.25  E-value=0.0069  Score=55.33  Aligned_cols=132  Identities=11%  Similarity=-0.053  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-------
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-------  359 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------  359 (498)
                      .|..|...|.-.|+++.|+..-+.-+.-        .+.+|-.. ....+..+..++.-.|+++.|.+.|+..       
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~i--------a~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel  268 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEI--------AQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL  268 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHH--------HHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh
Confidence            5566666666778888877654432221        11112211 3678889999999999999999998865       


Q ss_pred             C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cC--CCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          360 P-IEPDNYVLGALLNACRVHGDVDLGKETVESLVE----RS--LDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       360 ~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      + ......+..+|...|.-..++++|+.++.+-+.    ++  .....++..|+.++...|..+.|..+.+...+
T Consensus       269 g~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  269 GNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             cchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            2 223455666788888888899999998887554    22  34566889999999999999999987776654

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.21  E-value=0.0038  Score=52.27  Aligned_cols=96  Identities=9%  Similarity=0.128  Sum_probs=72.0

Q ss_pred             HHHhhC--CCCChhHHHHHHHHHHh-----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc--------------
Q 010881          175 QMFDKM--PEKNAVSWSAMINGYVQ-----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL--------------  233 (498)
Q Consensus       175 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~--------------  233 (498)
                      ..|+..  ...+..+|..++..|.+     .|..+=....++.|.+-|+.-|..+|+.||..+=+.              
T Consensus        35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h  114 (228)
T PF06239_consen   35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH  114 (228)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence            344444  34567777777777764     467777788888888889999999999998876432              


Q ss_pred             --CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 010881          234 --GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC  270 (498)
Q Consensus       234 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  270 (498)
                        .+-+-|++++++|...|+-||..++..+++.+.+.+.
T Consensus       115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence              3456678888999999999999999888888865543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.20  E-value=0.041  Score=53.44  Aligned_cols=232  Identities=10%  Similarity=-0.035  Sum_probs=119.6

Q ss_pred             HHHHHHHHhhcCCCCChhH--HHHHhhhcCCCCcchHH-HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 010881           22 AVGKIIGFCSASDIGDLSH--GYRLFVCLQYRTTFIWN-TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC   98 (498)
Q Consensus        22 ~~~~l~~~~~~~~~g~~~~--A~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~   98 (498)
                      .++.-=.+|.+.  .+..-  ..--++++.++....-. .+...|+-+|++.+|-++|.+-   |..      +..+..|
T Consensus       600 ~f~~ARkAY~rV--Rdl~~L~li~EL~~~k~rge~P~~iLlA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmy  668 (1081)
T KOG1538|consen  600 DFETARKAYIRV--RDLRYLELISELEERKKRGETPNDLLLADVFAYQGKFHEAAKLFKRS---GHE------NRALEMY  668 (1081)
T ss_pred             hhHHHHHHHHHH--hccHHHHHHHHHHHHHhcCCCchHHHHHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHH
Confidence            344445667776  44333  33334444443332222 2345566677888887777653   222      2233333


Q ss_pred             HccCCcHHHHHH------------HHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHc
Q 010881           99 ADTSCLFVGLIC------------HAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK  166 (498)
Q Consensus        99 ~~~g~~~~a~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~  166 (498)
                      ...+.++.|.++            .+.-.+  +..+..--.+...++...|+.++|..+                  ++.
T Consensus       669 TDlRMFD~aQE~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i------------------~~d  728 (1081)
T KOG1538|consen  669 TDLRMFDYAQEFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEI------------------CGD  728 (1081)
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhh------------------hhc
Confidence            333333333332            222111  111111112334445556666655544                  334


Q ss_pred             cCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 010881          167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYV  246 (498)
Q Consensus       167 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  246 (498)
                      .|-.+.+.++-+++...+..+...+...+.+...+.-|-++|.+|-..         ..+++.....+++.+|..+-+..
T Consensus       729 ~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h  799 (1081)
T KOG1538|consen  729 HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH  799 (1081)
T ss_pred             ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence            455556666666665555555555555555666677777777766432         24455556667777777665554


Q ss_pred             HHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 010881          247 DRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLE  315 (498)
Q Consensus       247 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  315 (498)
                      .+.  .  ..+|....+-++...++++|.+.                  |.+.|+-.+|.++++++...
T Consensus       800 Pe~--~--~dVy~pyaqwLAE~DrFeEAqkA------------------fhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  800 PEF--K--DDVYMPYAQWLAENDRFEEAQKA------------------FHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             ccc--c--ccccchHHHHhhhhhhHHHHHHH------------------HHHhcchHHHHHHHHHhhhh
Confidence            432  2  23444555566666777776664                  44566677777777776543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.18  E-value=0.27  Score=48.95  Aligned_cols=79  Identities=11%  Similarity=0.085  Sum_probs=39.6

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      |...|..-+.+++..+++++-+++-+...   ++.-|.-++.+|.+.|+.++|..++.+.-.        +.....+|.+
T Consensus       714 dKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~  782 (829)
T KOG2280|consen  714 DKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLR  782 (829)
T ss_pred             chhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHH
Confidence            44555555555555555555555544431   133444455555556665555555543311        1144455555


Q ss_pred             cCCcchHHHH
Q 010881          412 TEQWNGVEKV  421 (498)
Q Consensus       412 ~g~~~~a~~~  421 (498)
                      .|++.+|.++
T Consensus       783 ~~~~~eAad~  792 (829)
T KOG2280|consen  783 VGDVKEAADL  792 (829)
T ss_pred             hccHHHHHHH
Confidence            5555555544

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.16  E-value=0.15  Score=45.00  Aligned_cols=62  Identities=11%  Similarity=-0.114  Sum_probs=33.8

Q ss_pred             HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHhccCChHHHHHHHHHHHHh
Q 010881          188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAG--IVGALTACAFLGALDQGRWIHAYVDRN  249 (498)
Q Consensus       188 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~  249 (498)
                      +-.....+...|++++|...|+++...-..+....  ...+..++.+.+++++|...+++..+.
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            33344555667777777777777766422221111  123344555666666666666666554

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.14  E-value=0.33  Score=48.38  Aligned_cols=332  Identities=11%  Similarity=0.041  Sum_probs=181.4

Q ss_pred             HHhCCCchHHHHHHHHhH--------HCCCCCCcchHHH-----HHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 010881           63 FAEKNEPIKAFALYKQML--------RSDFLPNNYTFSF-----ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL  129 (498)
Q Consensus        63 ~~~~~~~~~A~~~~~~m~--------~~~~~p~~~~~~~-----ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  129 (498)
                      +.+..++++-..+.+..+        ..|++.+..-|..     ++.-+...+.+..|.++-..+...-..- ..++...
T Consensus       399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~W  477 (829)
T KOG2280|consen  399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEW  477 (829)
T ss_pred             ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHH
Confidence            334445555444444332        3366655555543     5666777788888888877664322121 5666667


Q ss_pred             HHHHHhCCCh--hhHHHHh-hccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhCCCC--------ChhHHHHHHHHHH
Q 010881          130 LHLYATCNCM--DPARKLF-DMSVN--RDVISWTSLINGYAKSGQISIARQMFDKMPEK--------NAVSWSAMINGYV  196 (498)
Q Consensus       130 ~~~~~~~g~~--~~a~~~~-~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~li~~~~  196 (498)
                      ..-+.+..+.  +++.+.+ +++..  .+..+|..+.+..-.+|+.+.|..+++.=+..        +..-+..-+.-..
T Consensus       478 a~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai  557 (829)
T KOG2280|consen  478 ARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI  557 (829)
T ss_pred             HHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence            7766665322  2233333 33434  45677888888888889999999888754432        2223444455556


Q ss_pred             hCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010881          197 QVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS  276 (498)
Q Consensus       197 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  276 (498)
                      ..|+.+-...++-.+.+.   .+...|...+      .+...|..+|.+..+..-.      ..+-+.|-...+...+-.
T Consensus       558 es~d~~Li~~Vllhlk~~---~~~s~l~~~l------~~~p~a~~lY~~~~r~~~~------~~l~d~y~q~dn~~~~a~  622 (829)
T KOG2280|consen  558 ESGDTDLIIQVLLHLKNK---LNRSSLFMTL------RNQPLALSLYRQFMRHQDR------ATLYDFYNQDDNHQALAS  622 (829)
T ss_pred             hcCCchhHHHHHHHHHHH---HHHHHHHHHH------HhchhhhHHHHHHHHhhch------hhhhhhhhcccchhhhhh
Confidence            667766666666655542   1111221111      2334455555444332101      111222222222222111


Q ss_pred             H-HhhCC-----CCChhHHHHHHHHHHhcCCh---HHHH-------HHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881          277 V-FDSMP-----NRDVFAYTSLISGLANHDQS---ASAI-------ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV  340 (498)
Q Consensus       277 ~-~~~~~-----~~~~~~~~~li~~~~~~~~~---~~a~-------~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~  340 (498)
                      + ++...     ++-.........++++....   ++|.       .+.+.+.           ..++..-..-+.+--+
T Consensus       623 ~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le-----------~q~~~~f~dlSl~dTv  691 (829)
T KOG2280|consen  623 FHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLE-----------DQFGGSFVDLSLHDTV  691 (829)
T ss_pred             hhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH-----------HHhccccccCcHHHHH
Confidence            1 11110     11111222233334433321   1111       1222222           2233333344556667


Q ss_pred             HHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHH
Q 010881          341 DLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK  420 (498)
Q Consensus       341 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  420 (498)
                      .-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-+++-+..   .+  |--|.-...+|.+.|+.+||.+
T Consensus       692 ~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAksk---ks--PIGy~PFVe~c~~~~n~~EA~K  765 (829)
T KOG2280|consen  692 TTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSK---KS--PIGYLPFVEACLKQGNKDEAKK  765 (829)
T ss_pred             HHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhcc---CC--CCCchhHHHHHHhcccHHHHhh
Confidence            77778899999999999887 478888888888999999988766655432   22  4468888899999999999999


Q ss_pred             HHHhhhh
Q 010881          421 VRRGMED  427 (498)
Q Consensus       421 ~~~~m~~  427 (498)
                      ++.+...
T Consensus       766 Yiprv~~  772 (829)
T KOG2280|consen  766 YIPRVGG  772 (829)
T ss_pred             hhhccCC
Confidence            9977754

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.13  E-value=0.00032  Score=40.13  Aligned_cols=33  Identities=12%  Similarity=0.182  Sum_probs=30.6

Q ss_pred             HHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881          387 TVESLVERSLDHEGVHVLLSNIYASTEQWNGVE  419 (498)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  419 (498)
                      +|+++++++|+++.+|..++.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            378899999999999999999999999999986

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.13  E-value=0.001  Score=40.80  Aligned_cols=42  Identities=19%  Similarity=0.111  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN  407 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  407 (498)
                      .++..+..+|...|++++|+++|+++++..|+++..+..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            357788999999999999999999999999999988877754

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.10  E-value=0.011  Score=52.75  Aligned_cols=103  Identities=15%  Similarity=0.136  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP---  363 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---  363 (498)
                      .|..-+..+.+.|++++|...|+.+...  .|+.      ..  ....+..+..+|...|++++|...|+.+ ...|   
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s------~~--a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~  214 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDS------TY--QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSP  214 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCC------cc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc
Confidence            4555454456679999999999999885  3441      11  1356778999999999999999999998 2223   


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG  400 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  400 (498)
                       ....+..+...+...|+.+.|...|+.+++..|++..
T Consensus       215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence             3555666677788999999999999999999998763

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.10  E-value=0.0021  Score=60.17  Aligned_cols=63  Identities=8%  Similarity=-0.025  Sum_probs=39.3

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDN----YVLGALLNACRVHGDVDLGKETVESLVER  394 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  394 (498)
                      +...++.+..+|...|++++|+..|++. .+.|+.    .+|..+..+|...|++++|++.++++++.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556666666666666666666666664 445542    23666666666666666666666666665

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.017  Score=49.67  Aligned_cols=161  Identities=7%  Similarity=-0.047  Sum_probs=113.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh
Q 010881          258 GTAIIDMYAKCGCIETACSVFDSMPNR----------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY  327 (498)
Q Consensus       258 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~  327 (498)
                      ++.|.+.+.-..-+++-...++.-..|          -....+.++..+.-.+.+.-.+..+.+..+..           
T Consensus       139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-----------  207 (366)
T KOG2796|consen  139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-----------  207 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-----------
Confidence            344555554444444444444433221          12344556666777788888888888888752           


Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--------PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                       .+.++.....|+..-.+.||.+.|...|++.        ++.-+..+.......+.-++++..|...+++++..+|.++
T Consensus       208 -~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~  286 (366)
T KOG2796|consen  208 -PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA  286 (366)
T ss_pred             -CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence             2235777888888889999999999999854        3333333444444566778899999999999999999998


Q ss_pred             hHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      ...+.-+-++.-.|+..+|++.++.|.+...
T Consensus       287 ~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  287 VANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             hhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            8777777778888999999999999987543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.07  E-value=0.017  Score=51.03  Aligned_cols=102  Identities=15%  Similarity=0.138  Sum_probs=77.8

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc---CCHHHHHHHHHhC-C
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA---GMLEAAKKVVREM-P  360 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~-~  360 (498)
                      |...|-.|...|...|+.+.|..-|.+..+  +.|+           +...+..+..++...   .+-.++..+|+++ .
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~-----------n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~  221 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGD-----------NPEILLGLAEALYYQAGQQMTAKARALLRQALA  221 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCC-----------CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence            677888888888888888888888888776  3444           566777777766543   2456788888888 5


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          361 IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       361 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      ..| |..+...|...+...|++.+|...|+.|++..|.+.
T Consensus       222 ~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~  261 (287)
T COG4235         222 LDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD  261 (287)
T ss_pred             cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence            566 666677777788999999999999999999887654

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.03  E-value=0.13  Score=41.96  Aligned_cols=62  Identities=11%  Similarity=0.050  Sum_probs=27.5

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881          253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASAIELFMRMQL  314 (498)
Q Consensus       253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  314 (498)
                      |++..--.|..++.+.|+..+|...|++...    .|....-.+.++....++...|...++.+.+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e  152 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLME  152 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhh
Confidence            3333334444444444444444444444332    2333344444444444444444444444444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.99  E-value=0.069  Score=51.95  Aligned_cols=101  Identities=12%  Similarity=0.104  Sum_probs=63.3

Q ss_pred             hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc
Q 010881          267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA  346 (498)
Q Consensus       267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~  346 (498)
                      ..|=.+.+.++-+++...+..+...+..-+.+...+.-|-++|.+|-+                     ...+++.....
T Consensus       728 d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------------------~ksiVqlHve~  786 (1081)
T KOG1538|consen  728 DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------------------LKSLVQLHVET  786 (1081)
T ss_pred             cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------------------HHHHhhheeec
Confidence            344445555555555555555555555556666677777888877743                     23467788888


Q ss_pred             CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010881          347 GMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVES  390 (498)
Q Consensus       347 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  390 (498)
                      +++++|..+-++. .+.|+.  |.....-++...++++|.+.|.+
T Consensus       787 ~~W~eAFalAe~hPe~~~dV--y~pyaqwLAE~DrFeEAqkAfhk  829 (1081)
T KOG1538|consen  787 QRWDEAFALAEKHPEFKDDV--YMPYAQWLAENDRFEEAQKAFHK  829 (1081)
T ss_pred             ccchHhHhhhhhCccccccc--cchHHHHhhhhhhHHHHHHHHHH
Confidence            8888888888887 444443  33444555666777777665543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.023  Score=52.24  Aligned_cols=61  Identities=5%  Similarity=-0.089  Sum_probs=31.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ++..+..+|.+.+++..|++..+++++.+|++..+.+.-+.+|...|+++.|+..|+++.+
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3444444555555555555555555555555555555555555555555555555555543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.98  E-value=0.0072  Score=48.86  Aligned_cols=60  Identities=17%  Similarity=0.083  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ...++..+...|+++.|.++++.++..+|-+...+..++.+|...|+..+|.++|+++.+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            445566778899999999999999999999999999999999999999999999998853

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.051  Score=46.86  Aligned_cols=160  Identities=11%  Similarity=0.026  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHhhCCCC----------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010881          156 SWTSLINGYAKSGQISIARQMFDKMPEK----------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG  225 (498)
Q Consensus       156 ~~~~li~~~~~~~~~~~A~~~~~~~~~~----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  225 (498)
                      .|+.|++.+.-...+++-+..++.-..|          -....+.++..+.-.|.+.-....+++..+...+.+......
T Consensus       138 pqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~  217 (366)
T KOG2796|consen  138 PQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSG  217 (366)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHH
Confidence            3555555554444444444444433322          223455677777778888888999999988766667777788


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH-----HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881          226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI-----IDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLA  297 (498)
Q Consensus       226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  297 (498)
                      +.+...+.|+.+.|...|+...+..-..|....+.+     ...|.-.+++..|...|.++..   .|+..-|.-.-+..
T Consensus       218 Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcll  297 (366)
T KOG2796|consen  218 LGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLL  297 (366)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHH
Confidence            888888999999999999988765445555444443     3355667889999999988875   35666666655666


Q ss_pred             hcCChHHHHHHHHHHHHc
Q 010881          298 NHDQSASAIELFMRMQLE  315 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~  315 (498)
                      -.|+..+|++.++.|+..
T Consensus       298 Ylg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  298 YLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             HHHHHHHHHHHHHHHhcc
Confidence            689999999999999875

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.93  E-value=0.051  Score=46.67  Aligned_cols=62  Identities=8%  Similarity=-0.045  Sum_probs=37.9

Q ss_pred             HHHHHHhCCCchHHHHHHHHhHHCCCC--CCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 010881           59 MIRGFAEKNEPIKAFALYKQMLRSDFL--PNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE  120 (498)
Q Consensus        59 li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  120 (498)
                      ....+...|++.+|+..|+.+...-..  --....-.+..++.+.|+++.|...+++.++.-+.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~   74 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN   74 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            344556678888888888888763210  11223445666777888888888888888776554

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.92  E-value=0.022  Score=44.65  Aligned_cols=123  Identities=13%  Similarity=0.037  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH-HHHHHH
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM----PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV-HVLLSN  407 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~l~~  407 (498)
                      ..+-.-.....+.|++++|.+.|+.+    +..| ....-..++.+|.+.++++.|...+++.+++.|.++.+ |.....
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            33444455667899999999999998    3333 45566778999999999999999999999999997754 444444


Q ss_pred             HhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCc
Q 010881          408 IYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGN  482 (498)
Q Consensus       408 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~  482 (498)
                      ++..-...+   ..+..+.  +.                     ++......+....+.++.+...++.|-+|..
T Consensus        91 gL~~~~~~~---~~~~~~~--~~---------------------drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~  139 (142)
T PF13512_consen   91 GLSYYEQDE---GSLQSFF--RS---------------------DRDPTPARQAFRDFEQLVRRYPNSEYAADAR  139 (142)
T ss_pred             HHHHHHHhh---hHHhhhc--cc---------------------ccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence            444333222   1221111  11                     1222344567777777777777777766653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.88  E-value=0.54  Score=46.53  Aligned_cols=184  Identities=10%  Similarity=0.004  Sum_probs=100.5

Q ss_pred             hhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCC--------CcchHHHHHHHHHccCCcHHHH
Q 010881           38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLP--------NNYTFSFILRACADTSCLFVGL  108 (498)
Q Consensus        38 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p--------~~~~~~~ll~~~~~~g~~~~a~  108 (498)
                      +++|.+..+.  .|.+..|..+.......-.++.|...|-+.... |++.        +...-.+=+.  +--|++++|+
T Consensus       679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeae  754 (1189)
T KOG2041|consen  679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAE  754 (1189)
T ss_pred             hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhh
Confidence            4455555442  466677888887776666777777766655331 2211        0000011111  2247888888


Q ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC-----ChhhHHHHHHHHHccCCHHHHHHHHhhCCC-
Q 010881          109 ICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-----DVISWTSLINGYAKSGQISIARQMFDKMPE-  182 (498)
Q Consensus       109 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-  182 (498)
                      +++-++-+++         ..+..+.+.|++-...++++..-..     -..+|+.+...++....+++|.+.|..... 
T Consensus       755 k~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~  825 (1189)
T KOG2041|consen  755 KLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT  825 (1189)
T ss_pred             hhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            8877665543         3456667777777777777654322     124566666666666666666666554431 


Q ss_pred             ------------------------CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881          183 ------------------------KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ  238 (498)
Q Consensus       183 ------------------------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  238 (498)
                                              .+....-.+...+.+.|.-++|.+.|-+--    .|.     ..+..|...+++.+
T Consensus       826 e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~pk-----aAv~tCv~LnQW~~  896 (1189)
T KOG2041|consen  826 ENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LPK-----AAVHTCVELNQWGE  896 (1189)
T ss_pred             HhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----CcH-----HHHHHHHHHHHHHH
Confidence                                    134444555666666666666665553321    121     23445555556655


Q ss_pred             HHHHH
Q 010881          239 GRWIH  243 (498)
Q Consensus       239 a~~~~  243 (498)
                      |.++-
T Consensus       897 avela  901 (1189)
T KOG2041|consen  897 AVELA  901 (1189)
T ss_pred             HHHHH
Confidence            55543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.86  E-value=0.37  Score=44.29  Aligned_cols=270  Identities=14%  Similarity=0.064  Sum_probs=145.5

Q ss_pred             CCChhhHHHHhhc---cCCCChhhHHHHHHHH--HccCCHHHHHHHHhhCCCCChhH----HHHHHHHHHhCCCHhHHHH
Q 010881          136 CNCMDPARKLFDM---SVNRDVISWTSLINGY--AKSGQISIARQMFDKMPEKNAVS----WSAMINGYVQVDLFKEALE  206 (498)
Q Consensus       136 ~g~~~~a~~~~~~---~~~~~~~~~~~li~~~--~~~~~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~a~~  206 (498)
                      .|+-..|.++-.+   ....|......++.+-  .-.|+.+.|.+-|+.|... +.+    ...|.-..-+.|+.+.|..
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~  175 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARH  175 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHH
Confidence            3444555554433   2233444444444332  2346667777777666531 111    2222223345566666666


Q ss_pred             HHHHHHHcCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCChhH--HHHHHHHHH---hcCCHHHHHHHHh
Q 010881          207 HFNYMQLCGFRPN-HAGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDIIL--GTAIIDMYA---KCGCIETACSVFD  279 (498)
Q Consensus       207 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~  279 (498)
                      +-++.-..  .|. .-.....+...+..|+++.|+++++.-.... +.++..-  -..|+.+-.   -..+...|...-.
T Consensus       176 yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~  253 (531)
T COG3898         176 YAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDAL  253 (531)
T ss_pred             HHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            66655443  222 2345566666677777777777766544332 2333211  112222111   1123444444433


Q ss_pred             hCCC--CChhH-HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 010881          280 SMPN--RDVFA-YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV  356 (498)
Q Consensus       280 ~~~~--~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  356 (498)
                      +..+  ||... --.-..++.+.|+..++-.+++.+-+....|+                  +...|.+..--+.++.-+
T Consensus       254 ~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~------------------ia~lY~~ar~gdta~dRl  315 (531)
T COG3898         254 EANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD------------------IALLYVRARSGDTALDRL  315 (531)
T ss_pred             HHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH------------------HHHHHHHhcCCCcHHHHH
Confidence            3332  44332 22234578888888888888888877643333                  233343333323344434


Q ss_pred             HhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc-CCcchHHHHHHhhhh
Q 010881          357 REM----PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST-EQWNGVEKVRRGMED  427 (498)
Q Consensus       357 ~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~  427 (498)
                      ++.    .++| +..+...+..+....|++..|..--+.+....|... .|..|+.+-... |+-.++...+-+..+
T Consensus       316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres-~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRES-AYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhh-HHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            333    4556 566666777788888999888888888888888764 677777776554 887777777755543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.81  E-value=0.0023  Score=45.24  Aligned_cols=61  Identities=15%  Similarity=0.099  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---chHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVER----SLDH---EGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      .+|+.+...|...|++++|+..|+++++.    ++++   ..++..++.++...|++++|.+++++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666666666666666666666642    1111   2345566666777777777776666553

...

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.78  E-value=0.0027  Score=44.90  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=51.5

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-------P-IEPD-NYVLGALLNACRVHGDVDLGKETVESLVER  394 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  394 (498)
                      ..+++.+..+|...|++++|+..|++.       + -.|+ ..++..+...+...|++++|++.+++++++
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            568899999999999999999999887       2 1222 567888899999999999999999998764

...

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.60  E-value=0.02  Score=43.54  Aligned_cols=92  Identities=15%  Similarity=0.137  Sum_probs=76.9

Q ss_pred             HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----hHHHHHHHHhHhcC
Q 010881          340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE----GVHVLLSNIYASTE  413 (498)
Q Consensus       340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g  413 (498)
                      .-++...|+++.|++.|.+. .+-| .+..||.-..++.-+|+.++|++-+++++++.-+..    ..|..-+..|...|
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            44677899999999999987 4444 788999999999999999999999999999763323    24667778899999


Q ss_pred             CcchHHHHHHhhhhCCcc
Q 010881          414 QWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       414 ~~~~a~~~~~~m~~~~~~  431 (498)
                      +-+.|..-|+...+.|-+
T Consensus       130 ~dd~AR~DFe~AA~LGS~  147 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLGSK  147 (175)
T ss_pred             chHHHHHhHHHHHHhCCH
Confidence            999999999998887753

>PRK11906 transcriptional regulator; Provisional

Probab=96.47  E-value=0.097  Score=49.53  Aligned_cols=132  Identities=14%  Similarity=0.102  Sum_probs=97.3

Q ss_pred             hHH--HHHHHHHHhc-----CChHHHHHHHHHHHHc-CCCCCchhhhhhCCCCChHHHHHHHHHHhh---------cCCH
Q 010881          287 FAY--TSLISGLANH-----DQSASAIELFMRMQLE-GVVPNESMSEIYGIEPGVQHYGCLVDLLGR---------AGML  349 (498)
Q Consensus       287 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~~-~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~  349 (498)
                      ..|  ..++.+....     ...+.|+.+|.+.... .+.|+           ....|..+..++..         ..+.
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~-----------~a~a~~~lA~~h~~~~~~g~~~~~~~~  320 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTL-----------KTECYCLLAECHMSLALHGKSELELAA  320 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcc-----------cHHHHHHHHHHHHHHHHhcCCCchHHH
Confidence            556  6666665542     2346788889998732 24454           35566655554432         2345


Q ss_pred             HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          350 EAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       350 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .+|.++-++. .+.| |+.....+..+....++++.|..+|+++..++|+...++...+..+.-.|+.++|.+.+++..+
T Consensus       321 ~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        321 QKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            5666776666 4455 7888888888888888899999999999999999999999999999999999999999988655


Q ss_pred             CC
Q 010881          428 NE  429 (498)
Q Consensus       428 ~~  429 (498)
                      ..
T Consensus       401 Ls  402 (458)
T PRK11906        401 LE  402 (458)
T ss_pred             cC
Confidence            43

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.46  E-value=0.49  Score=40.61  Aligned_cols=60  Identities=10%  Similarity=-0.104  Sum_probs=31.6

Q ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 010881          190 AMINGYVQVDLFKEALEHFNYMQLCGFRP--NHAGIVGALTACAFLGALDQGRWIHAYVDRN  249 (498)
Q Consensus       190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  249 (498)
                      .....+...|++.+|...|+.+.......  -......+..++.+.|+++.|...++...+.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34455566777777777777776542111  1123334455556666666666666665544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.45  E-value=0.81  Score=42.98  Aligned_cols=131  Identities=15%  Similarity=0.158  Sum_probs=101.1

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC
Q 010881          255 IILGTAIIDMYAKCGCIETACSVFDSMPN-----RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI  329 (498)
Q Consensus       255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~  329 (498)
                      ..+|...+++-.+..-++.|..+|-++.+     +++..+++++..++ .|+..-|..+|+--+..  .||         
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d---------  464 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPD---------  464 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCC---------
Confidence            45677788888888889999999988765     57888999998766 56777888888876653  233         


Q ss_pred             CCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPD--NYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                        +..--+..+..+.+.++-..|..+|+..  .+..+  ...|..+|..-..-|+...+..+-+++.++-|...
T Consensus       465 --~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen  536 (660)
T COG5107         465 --STLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQEN  536 (660)
T ss_pred             --chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHh
Confidence              2333455677778899999999999965  33333  56889999988999999999999999998888764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.21  Score=42.73  Aligned_cols=206  Identities=13%  Similarity=0.104  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA  266 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  266 (498)
                      .|..-..+|-...++++|...+.+..+. ..-+...|.       ....+++|.-+.+++.+.  +--+..|+.-...|.
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~  102 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYV  102 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence            3444556677777888887766665431 111111111       122345555555555543  223455667777888


Q ss_pred             hcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc
Q 010881          267 KCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA  346 (498)
Q Consensus       267 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~  346 (498)
                      .+|..+.|-..+++.-+            ....-++++|+++|.+...- +.-++      ....-...+......+.+.
T Consensus       103 E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqralav-ve~~d------r~~ma~el~gk~sr~lVrl  163 (308)
T KOG1585|consen  103 ECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRALAV-VEEDD------RDQMAFELYGKCSRVLVRL  163 (308)
T ss_pred             HhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHHHH-Hhccc------hHHHHHHHHHHhhhHhhhh
Confidence            88888877776665421            23445667777777665442 11110      0111234566667778888


Q ss_pred             CCHHHHHHHHHhC-C------CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchHHHHHHHHhHhcCC
Q 010881          347 GMLEAAKKVVREM-P------IEPD-NYVLGALLNACRVHGDVDLGKETVESLVE----RSLDHEGVHVLLSNIYASTEQ  414 (498)
Q Consensus       347 g~~~~A~~~~~~~-~------~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~  414 (498)
                      ..+++|-..+.+- +      -.++ -..|-..|-.+.-..++..|...++...+    .++++..+...|+.+| ..|+
T Consensus       164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD  242 (308)
T KOG1585|consen  164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD  242 (308)
T ss_pred             HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence            8888877666554 1      1122 23355556667777899999999988665    3455666777777766 4567


Q ss_pred             cchHHHHH
Q 010881          415 WNGVEKVR  422 (498)
Q Consensus       415 ~~~a~~~~  422 (498)
                      .+++..++
T Consensus       243 ~E~~~kvl  250 (308)
T KOG1585|consen  243 IEEIKKVL  250 (308)
T ss_pred             HHHHHHHH
Confidence            67766654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.41  E-value=0.068  Score=49.25  Aligned_cols=96  Identities=10%  Similarity=0.077  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA  410 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  410 (498)
                      ..++..|.-++.+.+++.+|++..++. ... +|...+-.-..+|...|+++.|+..|++++++.|.+-.+-..|+.+-.
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ  336 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            456788899999999999999998887 434 478888888889999999999999999999999999888888887777


Q ss_pred             hcCCcchH-HHHHHhhhhC
Q 010881          411 STEQWNGV-EKVRRGMEDN  428 (498)
Q Consensus       411 ~~g~~~~a-~~~~~~m~~~  428 (498)
                      +..++.+. .++|..|-..
T Consensus       337 k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            76666554 6788888653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.37  E-value=1.2  Score=44.28  Aligned_cols=133  Identities=10%  Similarity=0.006  Sum_probs=70.3

Q ss_pred             CChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCCCcchHHHHHHHHHccCCcHHHHHHHHHH
Q 010881           36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNNYTFSFILRACADTSCLFVGLICHAQV  114 (498)
Q Consensus        36 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  114 (498)
                      |.+++|++++-.+.++|.     .|....+.|++-...++++.=-.. +-..-...|+.+-..+.....++.|.+.|..-
T Consensus       748 g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~  822 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYC  822 (1189)
T ss_pred             cchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            889999999998887764     455666677777666665431100 00011234666666666666677776666543


Q ss_pred             HHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC
Q 010881          115 IRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK  183 (498)
Q Consensus       115 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~  183 (498)
                      ...         ...+.++.+..++++-+.+.+.++ .+....-.+..++.+.|.-++|.+.|-+...|
T Consensus       823 ~~~---------e~~~ecly~le~f~~LE~la~~Lp-e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p  881 (1189)
T KOG2041|consen  823 GDT---------ENQIECLYRLELFGELEVLARTLP-EDSELLPVMADMFTSVGMCDQAVEAYLRRSLP  881 (1189)
T ss_pred             cch---------HhHHHHHHHHHhhhhHHHHHHhcC-cccchHHHHHHHHHhhchHHHHHHHHHhccCc
Confidence            211         123444444444444443333332 22333344445555555555555555444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.36  E-value=0.025  Score=49.34  Aligned_cols=91  Identities=13%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHH
Q 010881          335 HYGCLVDLLGRAGMLEAAKKVVREM-------PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH---EGVHVL  404 (498)
Q Consensus       335 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~  404 (498)
                      .|+.-++. .+.|++.+|...|...       ...|+...  -|..++...|++++|..+|..+.+..|++   +..+.-
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~y--WLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK  220 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYY--WLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK  220 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHH--HHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence            46655554 4677799999999987       23344444  48899999999999999999999977664   467889


Q ss_pred             HHHHhHhcCCcchHHHHHHhhhhC
Q 010881          405 LSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       405 l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      |+.+..+.|+.++|..+|++..++
T Consensus       221 lg~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         221 LGVSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHH
Confidence            999999999999999999998765

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.33  E-value=0.061  Score=41.76  Aligned_cols=87  Identities=20%  Similarity=0.130  Sum_probs=52.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCch-----hhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 010881          286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES-----MSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-  359 (498)
Q Consensus       286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  359 (498)
                      ..++.++|.++++.|+.+....+++..  -|+.++..     ........|+..+..+++.+|+..|++..|.++++.. 
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~--WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs   79 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSV--WGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFS   79 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHh--cCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            456677777777777777777777554  23333320     1111245566667777777777777777777666655 


Q ss_pred             ---CCCCCHHHHHHHHHH
Q 010881          360 ---PIEPDNYVLGALLNA  374 (498)
Q Consensus       360 ---~~~p~~~~~~~l~~~  374 (498)
                         +++.+...|..|+.-
T Consensus        80 ~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   80 RKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             HHcCCCCCHHHHHHHHHH
Confidence               554556666666653

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.31  E-value=0.027  Score=53.02  Aligned_cols=67  Identities=12%  Similarity=-0.069  Sum_probs=62.2

Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch---HHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          362 EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG---VHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       362 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      .| +...++.+..+|...|++++|+..|+++++++|++..   +|+.++.+|...|+.++|++.+++..+.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34 7889999999999999999999999999999999885   4999999999999999999999999875

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.30  E-value=0.99  Score=42.44  Aligned_cols=130  Identities=15%  Similarity=0.162  Sum_probs=93.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 010881          286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD  364 (498)
Q Consensus       286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  364 (498)
                      ...|..++....+..-.+.|..+|-+..+.|+           +.+++..+++++..++ .|+...|..+|+-- ..-||
T Consensus       397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-----------~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d  464 (660)
T COG5107         397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-----------VGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPD  464 (660)
T ss_pred             hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-----------CCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCC
Confidence            34677788888888889999999999988863           3446888999888776 57788899999865 33444


Q ss_pred             HH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          365 NY-VLGALLNACRVHGDVDLGKETVESLVERSLD--HEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       365 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .. .-+..+.-+...++-+.|..+|+..++.--.  -...|..++..-..-|+...|..+=++|.+
T Consensus       465 ~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         465 STLYKEKYLLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             chHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            43 3455677778889999999999976653222  234677777777777877766666555543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.11  E-value=0.13  Score=40.00  Aligned_cols=78  Identities=18%  Similarity=0.245  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM------------------PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~------------------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                      |..++..++.++++.|+++....+++..                  +..|+..++.+++.+|+..|++..|+++++...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3578899999999999999999999876                  2457889999999999999999999999999998


Q ss_pred             cCC--CCchHHHHHHHHh
Q 010881          394 RSL--DHEGVHVLLSNIY  409 (498)
Q Consensus       394 ~~~--~~~~~~~~l~~~~  409 (498)
                      .-|  -+..++..|..-.
T Consensus        81 ~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             HcCCCCCHHHHHHHHHHH
Confidence            653  2345666665433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK11906 transcriptional regulator; Provisional

Probab=96.02  E-value=0.38  Score=45.70  Aligned_cols=140  Identities=11%  Similarity=0.073  Sum_probs=96.4

Q ss_pred             CHHHHHHHHhhCC---CCC---hhHHHHHHHHHHh---------cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChH
Q 010881          270 CIETACSVFDSMP---NRD---VFAYTSLISGLAN---------HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ  334 (498)
Q Consensus       270 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~  334 (498)
                      ..+.|..+|.+..   +-|   ...|..+..++..         .....+|.++.++..+.  .|+           |..
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~-----------Da~  339 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTV-----------DGK  339 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCC-----------CHH
Confidence            3567777888777   323   3334433333221         22345667777777664  333           688


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH--HHHHhH
Q 010881          335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL--LSNIYA  410 (498)
Q Consensus       335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--l~~~~~  410 (498)
                      ....+..++.-.++++.|...|++. .+.|| ..+|......+.-.|+.++|.+.++++++++|.....-..  .+..|+
T Consensus       340 a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~  419 (458)
T PRK11906        340 ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV  419 (458)
T ss_pred             HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc
Confidence            8888888888899999999999998 67775 5556556666778899999999999999999987655443  333455


Q ss_pred             hcCCcchHHHHHH
Q 010881          411 STEQWNGVEKVRR  423 (498)
Q Consensus       411 ~~g~~~~a~~~~~  423 (498)
                      .. ..++|++++-
T Consensus       420 ~~-~~~~~~~~~~  431 (458)
T PRK11906        420 PN-PLKNNIKLYY  431 (458)
T ss_pred             CC-chhhhHHHHh
Confidence            54 4577888763

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.97  E-value=1.4  Score=41.20  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=26.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  398 (498)
                      +---+.+++.++.-.|+.++|.+.++++....|+.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            33345667788888889999999999988887654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.93  E-value=1.5  Score=41.30  Aligned_cols=119  Identities=13%  Similarity=0.031  Sum_probs=76.0

Q ss_pred             HHhcCC-HHHHHHHHhhCCC---CChhHHHHHH----HHHHh---cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881          265 YAKCGC-IETACSVFDSMPN---RDVFAYTSLI----SGLAN---HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV  333 (498)
Q Consensus       265 ~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li----~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~  333 (498)
                      +.+.|. -++|.++++.+..   .|...-|.+.    .+|.+   .....+-+.+-+-+.+.|+.|-        ...+.
T Consensus       389 lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i--------~i~e~  460 (549)
T PF07079_consen  389 LWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI--------TISEE  460 (549)
T ss_pred             HHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc--------cccHH
Confidence            344554 6778888877664   3444333322    22322   1233444444444555665553        12245


Q ss_pred             HHHHHHHHH--HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881          334 QHYGCLVDL--LGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESL  391 (498)
Q Consensus       334 ~~~~~l~~~--~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  391 (498)
                      ..-|.|.++  +...|++.++.-.-.-+ .+.|++.+|..+.-+.....++++|..++..+
T Consensus       461 eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  461 EIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            566666654  56789999987665555 78899999999998999999999999988765

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.89  E-value=0.15  Score=44.67  Aligned_cols=104  Identities=21%  Similarity=0.243  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEP  363 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p  363 (498)
                      .|+.-+. +...|++..|...|...++.  -|+.      .+.|  ..+.-|..++...|+++.|..+|..+    +-.|
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~--YP~s------~~~~--nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~  212 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKK--YPNS------TYTP--NAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP  212 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHc--CCCC------cccc--hhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence            4665554 45577799999999999886  3442      2333  44555999999999999999999888    3334


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                       -+..+..|.....+.|+.++|...|+++++..|..+.+-
T Consensus       213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence             356778888899999999999999999999999976543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.89  E-value=0.32  Score=45.34  Aligned_cols=153  Identities=9%  Similarity=-0.021  Sum_probs=75.1

Q ss_pred             HHHhCCCchHHHHHHHHhHHCCC--CCCcc-hHHHHHHHHHc---cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 010881           62 GFAEKNEPIKAFALYKQMLRSDF--LPNNY-TFSFILRACAD---TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT  135 (498)
Q Consensus        62 ~~~~~~~~~~A~~~~~~m~~~~~--~p~~~-~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  135 (498)
                      +|....+++..+++.+.+.....  .++.. .--...-++.+   .|+.++|++++..++.....++..++..+...|..
T Consensus       150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD  229 (374)
T PF13281_consen  150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKD  229 (374)
T ss_pred             HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            45555666666666666654210  01111 11112223333   56666666666665544445555555555544322


Q ss_pred             ---------CCChhhHHHHhhccCCCChhhHH-----HHHHHHHccC-CHHHHHHHH---hhC------C--CCChhHHH
Q 010881          136 ---------CNCMDPARKLFDMSVNRDVISWT-----SLINGYAKSG-QISIARQMF---DKM------P--EKNAVSWS  189 (498)
Q Consensus       136 ---------~g~~~~a~~~~~~~~~~~~~~~~-----~li~~~~~~~-~~~~A~~~~---~~~------~--~~~~~~~~  189 (498)
                               ....+.|...|.+.-+.+...|+     +|+....... .-.+..++-   ..+      .  ..+-..+.
T Consensus       230 ~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~A  309 (374)
T PF13281_consen  230 LFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVA  309 (374)
T ss_pred             HHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHH
Confidence                     12355666666665433322221     1222111100 011111111   110      1  12445567


Q ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHc
Q 010881          190 AMINGYVQVDLFKEALEHFNYMQLC  214 (498)
Q Consensus       190 ~li~~~~~~g~~~~a~~~~~~m~~~  214 (498)
                      +++.+..-.|+.++|.+.+++|.+.
T Consensus       310 Tl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  310 TLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            8888999999999999999999876

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.76  E-value=0.55  Score=45.43  Aligned_cols=154  Identities=15%  Similarity=0.111  Sum_probs=85.5

Q ss_pred             HHHhCCCchHHHHHHH--HhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881           62 GFAEKNEPIKAFALYK--QMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM  139 (498)
Q Consensus        62 ~~~~~~~~~~A~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  139 (498)
                      ...-.++++++.++.+  ++.. .+ | ..-...++..+-+.|.++.|+++..         |+.   .-.....++|++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L  334 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNL  334 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-H
T ss_pred             HHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCH
Confidence            3444677777666654  1111 12 1 3336667777777788877776532         222   234555677888


Q ss_pred             hhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC
Q 010881          140 DPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN  219 (498)
Q Consensus       140 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  219 (498)
                      +.|.++.++..  +...|..|.....+.|+++-|++.|.+...     |..|+-.|.-.|+.++..++.+.....|-   
T Consensus       335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-----~~~L~lLy~~~g~~~~L~kl~~~a~~~~~---  404 (443)
T PF04053_consen  335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD-----FSGLLLLYSSTGDREKLSKLAKIAEERGD---  404 (443)
T ss_dssp             HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT------HHHHHHHHHHCT-HHHHHHHHHHHHHTT----
T ss_pred             HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-----ccccHHHHHHhCCHHHHHHHHHHHHHccC---
Confidence            88877776554  555777777777777787777777777653     55666667777777666666666555441   


Q ss_pred             HHHHHHHHHHHhccCChHHHHHHH
Q 010881          220 HAGIVGALTACAFLGALDQGRWIH  243 (498)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~  243 (498)
                         ++....++.-.|+.++..+++
T Consensus       405 ---~n~af~~~~~lgd~~~cv~lL  425 (443)
T PF04053_consen  405 ---INIAFQAALLLGDVEECVDLL  425 (443)
T ss_dssp             ---HHHHHHHHHHHT-HHHHHHHH
T ss_pred             ---HHHHHHHHHHcCCHHHHHHHH
Confidence               334444444455555555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.76  E-value=0.32  Score=44.19  Aligned_cols=130  Identities=13%  Similarity=0.010  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CC
Q 010881          289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PI  361 (498)
Q Consensus       289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~  361 (498)
                      .-++..++...+.++++++.|+...+--...+       .......++..|...|.+..|+++|.-+..+.       ++
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~-------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l  197 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNND-------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL  197 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC-------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc
Confidence            33455667777778888888887765322222       11223567778888888888888877665554       32


Q ss_pred             CCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----chHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881          362 EPDNYVL-----GALLNACRVHGDVDLGKETVESLVERS--LDH----EGVHVLLSNIYASTEQWNGVEKVRRGM  425 (498)
Q Consensus       362 ~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m  425 (498)
                      ..-...|     ..|.-++...|....|.+..+++.++.  ..+    ......++.+|...|+.+.|+.-|+..
T Consensus       198 ~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  198 KDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             CchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            2212222     334456788888888888888876632  222    223446788888888888877766554

>PRK15331 chaperone protein SicA; Provisional

Probab=95.76  E-value=0.43  Score=38.55  Aligned_cols=84  Identities=11%  Similarity=-0.006  Sum_probs=59.3

Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhcCChHHHH
Q 010881          230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP---NRDVFAYTSLISGLANHDQSASAI  306 (498)
Q Consensus       230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~  306 (498)
                      +...|++++|..+|+.+.-.+ +.+...+..|..++-..+++++|...|....   ..|+..+.....+|...|+.+.|.
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHH
Confidence            356677777777777776665 4556666777777777778888877776432   346666666777777788888888


Q ss_pred             HHHHHHHH
Q 010881          307 ELFMRMQL  314 (498)
Q Consensus       307 ~~~~~m~~  314 (498)
                      ..|.....
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            87777766

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.72  E-value=0.39  Score=47.11  Aligned_cols=156  Identities=13%  Similarity=0.051  Sum_probs=100.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCC-CC---------hhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchh
Q 010881          258 GTAIIDMYAKCGCIETACSVFDSMPN-RD---------VFAYTSLISGLAN----HDQSASAIELFMRMQLEGVVPNESM  323 (498)
Q Consensus       258 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~---------~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~  323 (498)
                      +..++....=.|+-+.+++.+....+ ++         ...|...+..++.    ....+.|.+++..+...  -|    
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP----  264 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YP----  264 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CC----
Confidence            34455555556666766666665543 11         1244555544443    34667888888888774  23    


Q ss_pred             hhhhCCCCChHHH-HHHHHHHhhcCCHHHHHHHHHhC-C----C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881          324 SEIYGIEPGVQHY-GCLVDLLGRAGMLEAAKKVVREM-P----I-EPDNYVLGALLNACRVHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       324 ~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~----~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  396 (498)
                              +...| ..-...+...|++++|.+.|++. .    . +.....+.-+...+....++++|.+.+.++.+.+.
T Consensus       265 --------~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~  336 (468)
T PF10300_consen  265 --------NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK  336 (468)
T ss_pred             --------CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence                    33333 33356677789999999999875 1    1 12344556666778888999999999999998765


Q ss_pred             CCchHHH-HHHHHhHhcCCc-------chHHHHHHhhhh
Q 010881          397 DHEGVHV-LLSNIYASTEQW-------NGVEKVRRGMED  427 (498)
Q Consensus       397 ~~~~~~~-~l~~~~~~~g~~-------~~a~~~~~~m~~  427 (498)
                      -+...|. ..+.++...|+.       ++|.+++.+...
T Consensus       337 WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  337 WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            5544444 455566677888       788888877754

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.70  E-value=2.1  Score=41.08  Aligned_cols=189  Identities=15%  Similarity=0.055  Sum_probs=106.6

Q ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010881          190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG  269 (498)
Q Consensus       190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  269 (498)
                      .+|.-.-+..+.+.-++.-++.++  +.||..+...++. --......++.+++++..+.|-    ..+..- ......|
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLA-EEeA~Ti~Eae~l~rqAvkAgE----~~lg~s-~~~~~~g  244 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLA-EEEASTIVEAEELLRQAVKAGE----ASLGKS-QFLQHHG  244 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhcc-cccccCHHHHHHHHHHHHHHHH----Hhhchh-hhhhccc
Confidence            344444556666666666666665  3566544433332 2234457888888888776651    011000 0000111


Q ss_pred             CHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH
Q 010881          270 CIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML  349 (498)
Q Consensus       270 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  349 (498)
                      ..-+.  ...+-..+-+.+-..|..+.-+.|+.++|.+.+++|.+..  |.         .-+......|+.++...+.+
T Consensus       245 ~~~e~--~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~--p~---------~~~l~IrenLie~LLelq~Y  311 (539)
T PF04184_consen  245 HFWEA--WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF--PN---------LDNLNIRENLIEALLELQAY  311 (539)
T ss_pred             chhhh--hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC--Cc---------cchhhHHHHHHHHHHhcCCH
Confidence            11010  1111111223344456667778899999999999998752  11         11355778899999999999


Q ss_pred             HHHHHHHHhC-CC-CCC--HHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHhcCCCCc
Q 010881          350 EAAKKVVREM-PI-EPD--NYVLGALLNACRVHGD---------------VDLGKETVESLVERSLDHE  399 (498)
Q Consensus       350 ~~A~~~~~~~-~~-~p~--~~~~~~l~~~~~~~g~---------------~~~A~~~~~~~~~~~~~~~  399 (498)
                      .++..++.+. .+ -|.  ..+|+..+--....++               -..|.+.+.++++.+|.-+
T Consensus       312 ad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp  380 (539)
T PF04184_consen  312 ADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP  380 (539)
T ss_pred             HHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence            9999999887 22 232  4456665433333332               1346678888888777543

The molecular function of this protein is uncertain.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.67  E-value=0.066  Score=43.21  Aligned_cols=57  Identities=21%  Similarity=0.229  Sum_probs=31.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                      ..++..+...|++++|..+..++...  .|-           +...|..+|.+|...|+..+|.++|+++
T Consensus        66 ~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~-----------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   66 ERLAEALLEAGDYEEALRLLQRALAL--DPY-----------DEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHH--STT------------HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHhc--CCC-----------CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            33444555566666666666666553  121           4556666666666666666666666544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.58  E-value=1  Score=43.64  Aligned_cols=159  Identities=10%  Similarity=0.004  Sum_probs=105.2

Q ss_pred             HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010881           97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM  176 (498)
Q Consensus        97 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~  176 (498)
                      ...-.++++.+.++.+.-.-. +..+..-.+.++..+.+.|..+.|+++...     +   ..-.....+.|+++.|.++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~  340 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEI  340 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHH
Confidence            344567788766655311100 112245578889999999999999988642     2   2334556788999999999


Q ss_pred             HhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh
Q 010881          177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII  256 (498)
Q Consensus       177 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  256 (498)
                      -++..  +...|..|.....+.|+++-|...|.+..+         |..++-.|...|+.+.-.++.+.....|      
T Consensus       341 a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------  403 (443)
T PF04053_consen  341 AKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------  403 (443)
T ss_dssp             CCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT------
T ss_pred             HHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------
Confidence            88776  667999999999999999999999988653         4566666778888888888877777666      


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSM  281 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~  281 (498)
                      -++....++.-.|+.++..+++.+.
T Consensus       404 ~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  404 DINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             -HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            2455555566678888877776554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.57  E-value=0.078  Score=46.24  Aligned_cols=101  Identities=13%  Similarity=0.040  Sum_probs=80.0

Q ss_pred             hHHHHHhhhcC--CCCcchHHHHHHHHHhC-----CCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccC---------
Q 010881           39 SHGYRLFVCLQ--YRTTFIWNTMIRGFAEK-----NEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTS---------  102 (498)
Q Consensus        39 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g---------  102 (498)
                      -..+..|+..+  ++|-.+|-..+..+...     +..+--...++.|.+.|+.-|..+|+.|+..+-+..         
T Consensus        51 v~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~  130 (406)
T KOG3941|consen   51 VHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK  130 (406)
T ss_pred             cchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence            34456666666  57888888888877653     566777778899999999999999999999875532         


Q ss_pred             -------CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881          103 -------CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM  139 (498)
Q Consensus       103 -------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  139 (498)
                             +-+-+..++++|...|+.||..+-..|++++.+.+-.
T Consensus       131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence                   4456788999999999999999999999998776643

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.52  E-value=0.97  Score=36.02  Aligned_cols=123  Identities=14%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHH
Q 010881          226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASA  305 (498)
Q Consensus       226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  305 (498)
                      ++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++.  ..+.......+..|.+.+.++++
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~~   88 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEEA   88 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHHH
Confidence            4444444455555556665555554 345566666777666543 2333344442  22334444456666666666666


Q ss_pred             HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010881          306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA-GMLEAAKKVVREMPIEPDNYVLGALLNACR  376 (498)
Q Consensus       306 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~  376 (498)
                      ..++.++..                     +...+..+... ++++.|.+++.+.   .+...|..++..+.
T Consensus        89 ~~l~~k~~~---------------------~~~Al~~~l~~~~d~~~a~~~~~~~---~~~~lw~~~~~~~l  136 (140)
T smart00299       89 VELYKKDGN---------------------FKDAIVTLIEHLGNYEKAIEYFVKQ---NNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHhhcC---------------------HHHHHHHHHHcccCHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence            666666522                     22223333333 6666666666652   24455655555543

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.51  E-value=0.47  Score=36.44  Aligned_cols=65  Identities=11%  Similarity=0.095  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881          367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  431 (498)
                      .....+.....+|+-+.-.+++..+...+..++.....++.+|.+.|+..++.+++++.-++|++
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            33444555556666666666666555444444445556666666666666666666666665553

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.45  E-value=1.5  Score=37.88  Aligned_cols=198  Identities=16%  Similarity=0.044  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CCh-hHHHHHHH-H
Q 010881          221 AGIVGALTACAFLGALDQGRWIHAYVDRN-GIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDV-FAYTSLIS-G  295 (498)
Q Consensus       221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-~  295 (498)
                      ..+......+...+.+..+...+...... ........+......+...+++..+...+.....  ++. ........ .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            33444444444455555555444444331 1233344444555555555556666666655543  111 22222222 5


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHH
Q 010881          296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD--NYVLGALL  372 (498)
Q Consensus       296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~  372 (498)
                      +...|+++.|...+.+....  .|.        .......+......+...++.+++...+.+. ...++  ...+..+.
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  209 (291)
T COG0457         140 LYELGDYEEALELYEKALEL--DPE--------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLG  209 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhc--CCC--------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhh
Confidence            66777777777777776442  110        0012333444444466677777777777776 33333  56666677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ..+...++++.|...+..+....|.....+..+...+...+.++++...+.+..+.
T Consensus       210 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         210 LLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            77777777788888888877777764445555665655666677777777666543

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.32  E-value=0.059  Score=30.48  Aligned_cols=33  Identities=18%  Similarity=0.029  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  398 (498)
                      ..|..+...+...|++++|++.+++++++.|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            356667778888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.31  E-value=4  Score=41.77  Aligned_cols=208  Identities=12%  Similarity=0.036  Sum_probs=128.7

Q ss_pred             HHHHHHHHHccCCHHHHHHHHhhCCCCChh---HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010881          157 WTSLINGYAKSGQISIARQMFDKMPEKNAV---SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL  233 (498)
Q Consensus       157 ~~~li~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  233 (498)
                      ...-+..+.+...++-|+.+-+.-..+...   ......+.+.+.|++++|...|-+-... +.|+     .++.-|...
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda  410 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA  410 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH
Confidence            344555566666777777766554432111   2223345566789999998888776543 3333     244555555


Q ss_pred             CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChh--HHHHHHHHHHhcCChHHHHHHHHH
Q 010881          234 GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVF--AYTSLISGLANHDQSASAIELFMR  311 (498)
Q Consensus       234 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~  311 (498)
                      .....-..+++.+.+.|+ .+...-+.|+.+|.+.++.++-.++.+...+ ...  -....+..+.+.+-.++|..+-.+
T Consensus       411 q~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd~e~al~Ilr~snyl~~a~~LA~k  488 (933)
T KOG2114|consen  411 QRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFDVETALEILRKSNYLDEAELLATK  488 (933)
T ss_pred             HHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeeeHHHHHHHHHHhChHHHHHHHHHH
Confidence            566666677788888884 4556667899999999999998888877762 222  245566677777777888776665


Q ss_pred             HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881          312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESL  391 (498)
Q Consensus       312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  391 (498)
                      ....                    -..+--.+-..+++++|+++++.++..--..+.+....-+.. ...++-..++-+.
T Consensus       489 ~~~h--------------------e~vl~ille~~~ny~eAl~yi~slp~~e~l~~l~kyGk~Ll~-h~P~~t~~ili~~  547 (933)
T KOG2114|consen  489 FKKH--------------------EWVLDILLEDLHNYEEALRYISSLPISELLRTLNKYGKILLE-HDPEETMKILIEL  547 (933)
T ss_pred             hccC--------------------HHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHh-hChHHHHHHHHHH
Confidence            4331                    122344456678999999999998633333333333333333 3455555555554


Q ss_pred             Hh
Q 010881          392 VE  393 (498)
Q Consensus       392 ~~  393 (498)
                      .+
T Consensus       548 ~t  549 (933)
T KOG2114|consen  548 IT  549 (933)
T ss_pred             Hh
Confidence            43

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.30  E-value=0.043  Score=31.16  Aligned_cols=32  Identities=25%  Similarity=0.078  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      .+|..+...|...|++++|+..|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            46777888888888888888888888888886

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.27  E-value=0.22  Score=44.65  Aligned_cols=116  Identities=8%  Similarity=-0.034  Sum_probs=87.5

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHH----HH
Q 010881          298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P-IEPDNYVLG----AL  371 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~----~l  371 (498)
                      ..|+..+|-..++++++.             .+.|...+...-++|.-.|+.+.-...++++ + ..|+...|.    .+
T Consensus       115 ~~g~~h~a~~~wdklL~d-------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~Gmy  181 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMY  181 (491)
T ss_pred             ccccccHHHHHHHHHHHh-------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHH
Confidence            367778888888888874             3346777777778888888888888888877 3 355554332    33


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      .-++...|-+++|++..+++++++|.+.-+...++.++.-.|+++++.++..+-.
T Consensus       182 aFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te  236 (491)
T KOG2610|consen  182 AFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE  236 (491)
T ss_pred             HhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence            4456778899999999999999998888777788888888888888888776554

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.14  E-value=0.22  Score=43.53  Aligned_cols=109  Identities=11%  Similarity=0.162  Sum_probs=74.2

Q ss_pred             HHHHhhCC--CCChhHHHHHHHHHHh-----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-------------
Q 010881          174 RQMFDKMP--EKNAVSWSAMINGYVQ-----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL-------------  233 (498)
Q Consensus       174 ~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------  233 (498)
                      ++.|....  ++|..+|-..+..+..     .+..+-....++.|.+-|+.-|..+|+.||+.+-+.             
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~  133 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL  133 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence            33444444  4455666666555543     355666677778888888888888888888776443             


Q ss_pred             ---CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCC
Q 010881          234 ---GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI-ETACSVFDSMP  282 (498)
Q Consensus       234 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~  282 (498)
                         .+-+-++.++++|...|+.||-.+-..|++++.+.+-. .+..+..--|.
T Consensus       134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence               23455788999999999999999999999999877643 34444443343

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.95  E-value=2.3  Score=37.12  Aligned_cols=184  Identities=15%  Similarity=0.107  Sum_probs=101.1

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHhHHCC-CCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 010881           55 IWNTMIRGFAEKNEPIKAFALYKQMLRSD-FLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHL  132 (498)
Q Consensus        55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  132 (498)
                      .|+.-+ .-.+.|++++|.+.|+.+.... ..| ...+...++-++-+.++++.|....++.++.-+.....-|...|.+
T Consensus        37 LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Ylkg  115 (254)
T COG4105          37 LYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKG  115 (254)
T ss_pred             HHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHH
Confidence            344433 4457899999999999997642 111 3444566677788899999999999999988766555556666666


Q ss_pred             HHhCCC-------hhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHH
Q 010881          133 YATCNC-------MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL  205 (498)
Q Consensus       133 ~~~~g~-------~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  205 (498)
                      .+..-.       ...+.+.|..        +..++.-|=.+.-...|......+...=...=-.+.+.|.+.|.+..|.
T Consensus       116 Ls~~~~i~~~~rDq~~~~~A~~~--------f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~  187 (254)
T COG4105         116 LSYFFQIDDVTRDQSAARAAFAA--------FKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI  187 (254)
T ss_pred             HHHhccCCccccCHHHHHHHHHH--------HHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence            552211       1111111111        1111111111111111111111111000001123456788889999999


Q ss_pred             HHHHHHHHcCCCCC---HHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881          206 EHFNYMQLCGFRPN---HAGIVGALTACAFLGALDQGRWIHAYVDR  248 (498)
Q Consensus       206 ~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  248 (498)
                      .-+++|++. .+-+   ...+-.+..+|...|-.++|...-+-+..
T Consensus       188 nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         188 NRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            888888876 2222   23455566777777777777766554443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.93  E-value=1.6  Score=35.66  Aligned_cols=56  Identities=13%  Similarity=0.014  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010881          188 WSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD  247 (498)
Q Consensus       188 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  247 (498)
                      +..++..+...|++-+|+++.+.....    +......++.+..+.+|...=..+++...
T Consensus        92 ~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~  147 (167)
T PF07035_consen   92 YEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFE  147 (167)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            444455555666666666655543211    11112334455555555444444444433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.89  E-value=6.5  Score=42.00  Aligned_cols=26  Identities=15%  Similarity=0.010  Sum_probs=13.9

Q ss_pred             hHHHHHHHHHHhCC--ChhhHHHHhhcc
Q 010881          124 FVLNGLLHLYATCN--CMDPARKLFDMS  149 (498)
Q Consensus       124 ~~~~~l~~~~~~~g--~~~~a~~~~~~~  149 (498)
                      .....++..|.+.+  .+++++....+.
T Consensus       791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l  818 (1265)
T KOG1920|consen  791 KFNLFILTSYVKSNPPEIEEALQKIKEL  818 (1265)
T ss_pred             hhhHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            33445666666665  555555554433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.88  E-value=0.093  Score=43.34  Aligned_cols=92  Identities=13%  Similarity=0.062  Sum_probs=75.9

Q ss_pred             HHHHhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881          340 VDLLGRAGMLEAAKKVVREM-PIEPD------NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       340 ~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      ..-+.+.|++++|..-|... ..-|.      ...|..-..+..+.+.++.|+.-..++++++|....+...-+.+|.+.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            34567889999999998887 22222      345555566788999999999999999999999888888889999999


Q ss_pred             CCcchHHHHHHhhhhCCcc
Q 010881          413 EQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       413 g~~~~a~~~~~~m~~~~~~  431 (498)
                      ..+++|++=|+++.+....
T Consensus       182 ek~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDPS  200 (271)
T ss_pred             hhHHHHHHHHHHHHHhCcc
Confidence            9999999999999876543

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.73  E-value=1.7  Score=34.57  Aligned_cols=43  Identities=14%  Similarity=0.111  Sum_probs=21.3

Q ss_pred             HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC
Q 010881           93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC  136 (498)
Q Consensus        93 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  136 (498)
                      .++..+...+.......+++.+...+. .+...++.++..|++.
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~   54 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence            344444444455555555555555442 3444555555555543

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.72  E-value=3.6  Score=38.21  Aligned_cols=285  Identities=14%  Similarity=0.064  Sum_probs=174.2

Q ss_pred             HHHHHHHHH--ccCCcHHHHHHHHHHHHhCCCCchhHHHHHH--HHHHhCCChhhHHHHhhccCC-CChh--hHHHHHHH
Q 010881           91 FSFILRACA--DTSCLFVGLICHAQVIRLGWESYDFVLNGLL--HLYATCNCMDPARKLFDMSVN-RDVI--SWTSLING  163 (498)
Q Consensus        91 ~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~-~~~~--~~~~li~~  163 (498)
                      |-.|-.++.  ..|+-..|.++-.+..+. +..|...+-.++  ..-.-.|+++.|.+-|+.|.. |...  -...|.-.
T Consensus        85 yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyle  163 (531)
T COG3898          85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLE  163 (531)
T ss_pred             HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHH
Confidence            444444443  345666666655443321 122333332333  233456888888888888764 2221  22333334


Q ss_pred             HHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHh---ccC
Q 010881          164 YAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-FRPNHAG--IVGALTACA---FLG  234 (498)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~--~~~ll~~~~---~~~  234 (498)
                      -.+.|+.+.|...-+..-.  | -...+...+...|..|+|+.|+++.+.-++.. +.++..-  -..|+.+-.   -..
T Consensus       164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda  243 (531)
T COG3898         164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA  243 (531)
T ss_pred             HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence            4567887777776665542  2 34567788899999999999999998876543 3444322  122333221   123


Q ss_pred             ChHHHHHHHHHHHHhCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 010881          235 ALDQGRWIHAYVDRNGIELDI-ILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMR  311 (498)
Q Consensus       235 ~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~  311 (498)
                      +...|...-.+..+.  .|+. ...-.-..++.+.|++.++-.+++.+-+  |.+..+..  -.+.+.|+  .++.-+++
T Consensus       244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~l--Y~~ar~gd--ta~dRlkR  317 (531)
T COG3898         244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALL--YVRARSGD--TALDRLKR  317 (531)
T ss_pred             ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHH--HHHhcCCC--cHHHHHHH
Confidence            555666655555543  4443 2333445778999999999999998865  44444432  23344444  44444444


Q ss_pred             HHHc-CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh-cCCHHHHHHHH
Q 010881          312 MQLE-GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRV-HGDVDLGKETV  388 (498)
Q Consensus       312 m~~~-~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~  388 (498)
                      .... .++||           +.+....+..+-...|++..|..--+.. ...|....|..|...-.. .||-.++..++
T Consensus       318 a~~L~slk~n-----------naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wl  386 (531)
T COG3898         318 AKKLESLKPN-----------NAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWL  386 (531)
T ss_pred             HHHHHhcCcc-----------chHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHH
Confidence            4322 24555           5778888888999999999888777766 667888888888776544 49999999999


Q ss_pred             HHHHh
Q 010881          389 ESLVE  393 (498)
Q Consensus       389 ~~~~~  393 (498)
                      -+.+.
T Consensus       387 Aqav~  391 (531)
T COG3898         387 AQAVK  391 (531)
T ss_pred             HHHhc
Confidence            98886

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.67  E-value=4  Score=38.50  Aligned_cols=34  Identities=6%  Similarity=-0.168  Sum_probs=27.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881          379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       379 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      +..+++...|..+.+..|.....+..++..+.+.
T Consensus       272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  272 ESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             ccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence            7888999999999999998888888777666543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.64  E-value=1.9  Score=38.36  Aligned_cols=56  Identities=18%  Similarity=0.156  Sum_probs=33.8

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHH
Q 010881          254 DIILGTAIIDMYAKCGCIETACSVFDSMPNR-----DVFAYTSLISGLANHDQSASAIELF  309 (498)
Q Consensus       254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~  309 (498)
                      |...-..+...|...|+.+.|.+.+-.+.++     |...-..|+..+.-.|..+.+...+
T Consensus       235 d~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~  295 (304)
T COG3118         235 DVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY  295 (304)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence            5666666777777777777777766555432     4455566666666555444433333

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.54  E-value=0.44  Score=36.49  Aligned_cols=91  Identities=18%  Similarity=0.118  Sum_probs=71.6

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC--CHHHH
Q 010881          295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEP--DNYVL  368 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~  368 (498)
                      +.+..|+.+.|++.|.+.+..  .|.           ....||.-..++.-.|+.++|++-+++.    |-+-  -...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l--~P~-----------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~  118 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCL--APE-----------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAF  118 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHh--ccc-----------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHH
Confidence            577889999999999998763  343           5889999999999999999999999887    3121  12234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881          369 GALLNACRVHGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  398 (498)
                      ..-...|...|+-+.|..-|+.+-+++...
T Consensus       119 vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  119 VQRGLLYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHHHHHHhCchHHHHHhHHHHHHhCCHH
Confidence            444456888999999999999998888653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.45  E-value=2.3  Score=41.88  Aligned_cols=114  Identities=11%  Similarity=0.048  Sum_probs=57.3

Q ss_pred             CCHHHHHHHHhhCCC--CChhHHHHH-HHHHHhCCCHhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhccCChHHHHH
Q 010881          168 GQISIARQMFDKMPE--KNAVSWSAM-INGYVQVDLFKEALEHFNYMQLCG---FRPNHAGIVGALTACAFLGALDQGRW  241 (498)
Q Consensus       168 ~~~~~A~~~~~~~~~--~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~~~~~~~~~a~~  241 (498)
                      .+.+.|.++++.+..  |+...|... .+.+...|++++|++.|++.....   .+.....+--+.-.+....++++|..
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~  326 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAE  326 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHH
Confidence            445566666666654  444444322 344455566666666666543211   01122233334444555666666666


Q ss_pred             HHHHHHHhCCCCChhHHHHHH-HHHHhcCCH-------HHHHHHHhhCC
Q 010881          242 IHAYVDRNGIELDIILGTAII-DMYAKCGCI-------ETACSVFDSMP  282 (498)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~  282 (498)
                      .+..+.+.+ ..+..+|.-+. -++...|+.       ++|...|.+++
T Consensus       327 ~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  327 YFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            666666543 33434443322 233345555       66666666554

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.41  E-value=7.7  Score=44.73  Aligned_cols=290  Identities=10%  Similarity=0.031  Sum_probs=158.9

Q ss_pred             HHHHHHHhCCChhhHHHHhhcc----CCCC-hhhHH-HHHHHHHccCCHHHHHHHHhh-CCCCChhHHHHHHHHHHhCCC
Q 010881          128 GLLHLYATCNCMDPARKLFDMS----VNRD-VISWT-SLINGYAKSGQISIARQMFDK-MPEKNAVSWSAMINGYVQVDL  200 (498)
Q Consensus       128 ~l~~~~~~~g~~~~a~~~~~~~----~~~~-~~~~~-~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~  200 (498)
                      .+..+-.+++.+.+|...+++-    .+.+ ...+. .+...|+..+++|...-+... ...++   ....|......|+
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence            4455667888999999988873    1111 12333 344488888888887777663 33332   2334556678899


Q ss_pred             HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCCHHHHHHHHh
Q 010881          201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILG-TAIIDMYAKCGCIETACSVFD  279 (498)
Q Consensus       201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~  279 (498)
                      +..|...|+.+.+.+ ++...+++-++......+.++...-..+-..... .+....+ +.=+.+-.+.++++.....+.
T Consensus      1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred             HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence            999999999998764 3336677777777777777777666544443322 2222222 223344456666665555433


Q ss_pred             -----------------hCCCCChhHHHHHH-----------HHHHhcCChHHHHHHHHHHHH-----------cCCCCC
Q 010881          280 -----------------SMPNRDVFAYTSLI-----------SGLANHDQSASAIELFMRMQL-----------EGVVPN  320 (498)
Q Consensus       280 -----------------~~~~~~~~~~~~li-----------~~~~~~~~~~~a~~~~~~m~~-----------~~~~p~  320 (498)
                                       .+.++|......+|           .++...|-+..+.++.-++..           .++.++
T Consensus      1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s~~ 1622 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVSYD 1622 (2382)
T ss_pred             cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccCcc
Confidence                             11112222211111           111112222222222111110           112222


Q ss_pred             chhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881          321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEP-----DNYVLGALLNACRVHGDVDLGKETVESL  391 (498)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~  391 (498)
                      +      ...-+..-|..-+..-....+..+-+--+++.    ..+|     -..+|....+.....|+++.|...+-.+
T Consensus      1623 ~------~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A 1696 (2382)
T KOG0890|consen 1623 E------DSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNA 1696 (2382)
T ss_pred             c------cccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhh
Confidence            1      00111111211111111111111111111111    1122     2557888888899999999999988888


Q ss_pred             HhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      .+..+  +..+...+..+...|+...|+.++++..+...
T Consensus      1697 ~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1697 KESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             hhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            87773  45789999999999999999999999886654

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.38  E-value=3  Score=35.95  Aligned_cols=197  Identities=15%  Similarity=0.047  Sum_probs=111.9

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH-H
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLC-GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID-M  264 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~  264 (498)
                      .+......+...+++..+...+...... ........+..........+.+..+...+.........+ ......... +
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  139 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence            3334444444445555544444444331 112222333333344444444555555555444432111 111112222 5


Q ss_pred             HHhcCCHHHHHHHHhhCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHH
Q 010881          265 YAKCGCIETACSVFDSMPNRD------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYG  337 (498)
Q Consensus       265 ~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~  337 (498)
                      +...|+++.|...+......+      ...+......+...++.+.+...+.+.....             .. ....+.
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~  206 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-------------PDDDAEALL  206 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-------------cccchHHHH
Confidence            666666666666666553311      1223333333566788888888888887742             11 356778


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          338 CLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       338 ~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      .+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus       207 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            8888888888999999998887 44554 445555555555777899999999999988886

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.03  E-value=1.6  Score=39.39  Aligned_cols=49  Identities=2%  Similarity=-0.208  Sum_probs=21.3

Q ss_pred             cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC
Q 010881          101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV  150 (498)
Q Consensus       101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  150 (498)
                      .|+..+|-..++++++.- +.|...+.-.-.+|.-.|+.+.-...++++.
T Consensus       116 ~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi  164 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKII  164 (491)
T ss_pred             cccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence            344444444444444432 2233334334444444444444444444443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.93  E-value=0.14  Score=41.08  Aligned_cols=85  Identities=14%  Similarity=0.108  Sum_probs=52.3

Q ss_pred             HHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHH
Q 010881           94 ILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA  173 (498)
Q Consensus        94 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A  173 (498)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++....   .-...++..|.+.|.+++|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            5556666677777777777777666556677777777777777777777777763222   2234455555666666666


Q ss_pred             HHHHhhCC
Q 010881          174 RQMFDKMP  181 (498)
Q Consensus       174 ~~~~~~~~  181 (498)
                      .-++.++.
T Consensus        90 ~~Ly~~~~   97 (143)
T PF00637_consen   90 VYLYSKLG   97 (143)
T ss_dssp             HHHHHCCT
T ss_pred             HHHHHHcc
Confidence            66555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.70  E-value=2.1  Score=39.20  Aligned_cols=164  Identities=13%  Similarity=0.070  Sum_probs=90.5

Q ss_pred             HHHHHHHHHhCCCHhHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-----CChhHH
Q 010881          188 WSAMINGYVQVDLFKEALEHFNYMQLC-GFRP---NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-----LDIILG  258 (498)
Q Consensus       188 ~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~  258 (498)
                      |..+.+++-+..++.+++.+-+.-... |..|   .-....++-.++...+.++++.+.|+...+.-..     ....++
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvc  165 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVC  165 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehh
Confidence            344444444444555555544433221 1112   1122333455555566666666666655443211     123567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC-------CChh-HH-----HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881          259 TAIIDMYAKCGCIETACSVFDSMPN-------RDVF-AY-----TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE  325 (498)
Q Consensus       259 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~-~~-----~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  325 (498)
                      -.|...|.+..|+++|.-+..+..+       .|.. -|     -.|.-++...|+..+|.+.-++..+..+.-      
T Consensus       166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~------  239 (518)
T KOG1941|consen  166 VSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH------  239 (518)
T ss_pred             hhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh------
Confidence            7777778888887777655544322       2222 12     223346677788888887777765421111      


Q ss_pred             hhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          326 IYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       326 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                        |-.+ -......+.+.|...|+.+.|+.-|++.
T Consensus       240 --Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  240 --GDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             --CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence              1111 3556678889999999999998888765

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.67  E-value=12  Score=40.19  Aligned_cols=152  Identities=17%  Similarity=0.169  Sum_probs=91.7

Q ss_pred             CCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hccCChHHHHHHH
Q 010881          168 GQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC----AFLGALDQGRWIH  243 (498)
Q Consensus       168 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~~~~~~a~~~~  243 (498)
                      ++++.|+.-+.++.   ...|.-.++.--+.|.+.+|+.+|        .|+...+..+..+|    .....+++|.-.|
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y  962 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY  962 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            44455555444443   223333344444455555555554        56776666665555    3456677766666


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-Chh--HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881          244 AYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-DVF--AYTSLISGLANHDQSASAIELFMRMQLEGVVPN  320 (498)
Q Consensus       244 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  320 (498)
                      +..-+.         .--+.+|..+|++.+|..+..++... +..  +-..|+.-+...++.-+|-++..+....     
T Consensus       963 e~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd----- 1028 (1265)
T KOG1920|consen  963 ERCGKL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD----- 1028 (1265)
T ss_pred             HHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-----
Confidence            543221         23467788888888888888877754 322  2266777788888888888888776542     


Q ss_pred             chhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                                     ..-.+..|++...+++|..+....
T Consensus      1029 ---------------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1029 ---------------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             ---------------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence                           222455666667777777766554

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.65  E-value=7.9  Score=38.14  Aligned_cols=376  Identities=10%  Similarity=0.025  Sum_probs=210.9

Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcch---HHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHH
Q 010881           22 AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFI---WNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRAC   98 (498)
Q Consensus        22 ~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~   98 (498)
                      .+..|+.--.+.  .+++.++.+++.+...=+.+   |-.....=.+.|..+.+..+|++-.+ +++-+...|...+..+
T Consensus        47 ~wt~li~~~~~~--~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~  123 (577)
T KOG1258|consen   47 AWTTLIQENDSI--EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL  123 (577)
T ss_pred             chHHHHhccCch--hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence            344444433333  44556666666654322222   33344444566788888899988877 5655666666555444


Q ss_pred             H-ccCCcHHHHHHHHHHHHh-CCC-CchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHc---c-----
Q 010881           99 A-DTSCLFVGLICHAQVIRL-GWE-SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK---S-----  167 (498)
Q Consensus        99 ~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~---~-----  167 (498)
                      . ..|+.+.....|+.++.. |.. .+...|-..+..-..++++.....+++++.+-....++..-.-|.+   .     
T Consensus       124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~  203 (577)
T KOG1258|consen  124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKI  203 (577)
T ss_pred             hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhh
Confidence            3 457777777888887764 322 2445566777777778888888888888765444444333332211   1     


Q ss_pred             -CCHHHHHHHHh-----------------------hCCCCC-h--hHHHHHH-------HHHHhCCCHhHHHHHHHHHHH
Q 010881          168 -GQISIARQMFD-----------------------KMPEKN-A--VSWSAMI-------NGYVQVDLFKEALEHFNYMQL  213 (498)
Q Consensus       168 -~~~~~A~~~~~-----------------------~~~~~~-~--~~~~~li-------~~~~~~g~~~~a~~~~~~m~~  213 (498)
                       -..+++.++-.                       ....|. .  ...+.+-       ..+-......+....|+.-..
T Consensus       204 l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ik  283 (577)
T KOG1258|consen  204 LLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIK  283 (577)
T ss_pred             hcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcc
Confidence             11122211111                       111110 0  0011110       111122222233333333222


Q ss_pred             c---CCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---
Q 010881          214 C---GFRP----NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---  283 (498)
Q Consensus       214 ~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---  283 (498)
                      .   .++|    +..+|...+.--...|+.+.+.-.++...--- ..=...|-..+.-....|+.+-|..++....+   
T Consensus       284 rpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~  362 (577)
T KOG1258|consen  284 RPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHV  362 (577)
T ss_pred             ccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC
Confidence            1   1222    44567777777788888888888887765321 12234444455555556888888888776553   


Q ss_pred             CChhHHHHHHHHH-HhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHH---HHHHhC
Q 010881          284 RDVFAYTSLISGL-ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK---KVVREM  359 (498)
Q Consensus       284 ~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~  359 (498)
                      +.......+-..+ -..|+++.|..+++.+.+.-  |+           -+..-..-+....+.|..+.+.   +++...
T Consensus       363 k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg-----------~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~  429 (577)
T KOG1258|consen  363 KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PG-----------LVEVVLRKINWERRKGNLEDANYKNELYSSI  429 (577)
T ss_pred             CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--Cc-----------hhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence            3322222222233 34679999999999998752  44           2333333455667788888887   555444


Q ss_pred             -CCCCCHHHHHHHH----H-HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881          360 -PIEPDNYVLGALL----N-ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ  414 (498)
Q Consensus       360 -~~~p~~~~~~~l~----~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  414 (498)
                       ...-+......+.    + .+...++.+.|..++.++.+..|++...|..++......+.
T Consensus       430 ~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~  490 (577)
T KOG1258|consen  430 YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS  490 (577)
T ss_pred             cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence             2222333333222    2 24556899999999999999999999899999888777664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.57  E-value=0.17  Score=29.22  Aligned_cols=26  Identities=27%  Similarity=0.275  Sum_probs=16.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          368 LGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       368 ~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                      |..|...|...|++++|+++|++++.
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            55666666667777777777666443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=93.51  E-value=0.75  Score=38.80  Aligned_cols=31  Identities=16%  Similarity=0.127  Sum_probs=23.8

Q ss_pred             hHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          400 GVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      .+|..|+.-+...|+.++|..+|+-.....+
T Consensus       238 EtyFYL~K~~l~~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         238 ETYFYLGKYYLSLGDLDEATALFKLAVANNV  268 (297)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence            4677788888888888888888877765544

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=93.49  E-value=0.15  Score=45.87  Aligned_cols=87  Identities=10%  Similarity=-0.099  Sum_probs=64.7

Q ss_pred             HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881          340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG  417 (498)
Q Consensus       340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  417 (498)
                      .+-|.+.|.+++|+..|... .+.| |++++..-..+|.+...+..|+.-...++.++.....+|..-+.+-...|+..+
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E  183 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME  183 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            45677889999999998876 6667 788888888888888888888888888877776666666666666666677666


Q ss_pred             HHHHHHhhh
Q 010881          418 VEKVRRGME  426 (498)
Q Consensus       418 a~~~~~~m~  426 (498)
                      |.+-++...
T Consensus       184 AKkD~E~vL  192 (536)
T KOG4648|consen  184 AKKDCETVL  192 (536)
T ss_pred             HHHhHHHHH
Confidence            665554443

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.48  E-value=2.8  Score=32.41  Aligned_cols=64  Identities=20%  Similarity=0.256  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  396 (498)
                      .......++.+...|+-+.-.++++++  .-++++..+-.+..+|.+.|+..++.+++.++.+.+.
T Consensus        86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   86 SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             -HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            345555677777888888888887776  4467788888888888888888888888888887664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PRK09687 putative lyase; Provisional

Probab=93.37  E-value=6  Score=35.87  Aligned_cols=238  Identities=12%  Similarity=0.009  Sum_probs=124.0

Q ss_pred             HHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCc----HHHHHHHHHHHHhC
Q 010881           43 RLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCL----FVGLICHAQVIRLG  118 (498)
Q Consensus        43 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~----~~a~~~~~~~~~~~  118 (498)
                      .+++.+..+|.......+.++...|.. .+...+..+...   +|...=...+.+++..|+.    ..+...+..+... 
T Consensus        27 ~L~~~L~d~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~---~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-  101 (280)
T PRK09687         27 ELFRLLDDHNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS---KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-  101 (280)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC---CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-
Confidence            344444566666666666666666543 333444444332   3444444455556666653    3455555555332 


Q ss_pred             CCCchhHHHHHHHHHHhCCCh-----hhHHHHhhc-cCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHH
Q 010881          119 WESYDFVLNGLLHLYATCNCM-----DPARKLFDM-SVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMI  192 (498)
Q Consensus       119 ~~~~~~~~~~l~~~~~~~g~~-----~~a~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li  192 (498)
                       .++..+....+.++...+..     ..+...+.. ...++..+-...+.++.+.++.+....+..-+..++...-...+
T Consensus       102 -D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~  180 (280)
T PRK09687        102 -DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAA  180 (280)
T ss_pred             -CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHH
Confidence             34555555555555444321     122333322 23445566666677777777654444444444455555555555


Q ss_pred             HHHHhCC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 010881          193 NGYVQVD-LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI  271 (498)
Q Consensus       193 ~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  271 (498)
                      .++.+.+ +...+...+..+..   .++...-...+.++.+.++. .+...+-...+.+   +  .....+.++...|..
T Consensus       181 ~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~  251 (280)
T PRK09687        181 FALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK  251 (280)
T ss_pred             HHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH
Confidence            5555542 23456666666653   45666666677777777764 3444443333332   1  234566777777775


Q ss_pred             HHHHHHHhhCCC--CChhHHHHHHHHH
Q 010881          272 ETACSVFDSMPN--RDVFAYTSLISGL  296 (498)
Q Consensus       272 ~~A~~~~~~~~~--~~~~~~~~li~~~  296 (498)
                       +|...+..+.+  +|...-...+.++
T Consensus       252 -~a~p~L~~l~~~~~d~~v~~~a~~a~  277 (280)
T PRK09687        252 -TLLPVLDTLLYKFDDNEIITKAIDKL  277 (280)
T ss_pred             -hHHHHHHHHHhhCCChhHHHHHHHHH
Confidence             56666666553  4554444444444

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=93.33  E-value=0.087  Score=40.26  Aligned_cols=42  Identities=36%  Similarity=0.560  Sum_probs=34.5

Q ss_pred             ceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCcccCCccccccC
Q 010881          435 GCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFDDGNEVATEG  488 (498)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~  488 (498)
                      |++|++.    +.|++|+.+||+.        .+..+++..||.|++..++...
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~   43 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDV   43 (116)
T ss_pred             CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCc
Confidence            5788766    8999999999987        5567778889999999887643

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=93.13  E-value=4.1  Score=33.32  Aligned_cols=132  Identities=17%  Similarity=0.155  Sum_probs=76.8

Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881          241 WIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN  320 (498)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  320 (498)
                      ++.+-+.+.+++|+...+..+++.+.+.|++..-..++.--.-+|.......+-.+  .+.+..+.++--.|..+     
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR-----   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR-----   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-----
Confidence            34445566777888888888888888888877777776644433333332222222  22334444444444432     


Q ss_pred             chhhhhhCCCCChH-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          321 ESMSEIYGIEPGVQ-HYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       321 ~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                                  .. .+..+++.+...|++-+|.++.++. ++  +......++.+..+.+|...--.+++-..+
T Consensus        88 ------------L~~~~~~iievLL~~g~vl~ALr~ar~~~~~--~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 ------------LGTAYEEIIEVLLSKGQVLEALRYARQYHKV--DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ------------hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc--ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                        12 5666788888999999999998875 22  112224456666666665544444444443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.86  E-value=0.28  Score=27.65  Aligned_cols=31  Identities=23%  Similarity=0.123  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          367 VLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      +|..+...|...|++++|...|+++++..|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4566667777778888888888887777764

...

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.81  E-value=13  Score=38.27  Aligned_cols=141  Identities=12%  Similarity=0.050  Sum_probs=86.4

Q ss_pred             HHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh
Q 010881           60 IRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM  139 (498)
Q Consensus        60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  139 (498)
                      ..-+.+.|++++|..-|-+-... +.|     ..++.-|........--.+++.+.+.|+. +...-..|+.+|.+.++.
T Consensus       375 gd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~  447 (933)
T KOG2114|consen  375 GDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDV  447 (933)
T ss_pred             HHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcch
Confidence            34455678999988887776542 222     23566666666667777788888888865 445556789999999999


Q ss_pred             hhHHHHhhccCCCChh-hHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHH
Q 010881          140 DPARKLFDMSVNRDVI-SWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYM  211 (498)
Q Consensus       140 ~~a~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  211 (498)
                      +.-.++.+........ -....+..+.+.+-.++|..+-.+... +......   .+-..+++++|++++..+
T Consensus       448 ~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~i---lle~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  448 EKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDI---LLEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence            8888888766521111 133444455555555555554443332 2222222   233457777777777665

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.74  E-value=0.0053  Score=49.43  Aligned_cols=83  Identities=13%  Similarity=0.127  Sum_probs=49.8

Q ss_pred             HHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHH
Q 010881          227 LTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAI  306 (498)
Q Consensus       227 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  306 (498)
                      +..+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++....   .-...++..|.+.|.+++|.
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~   90 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAV   90 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHH
Confidence            444555556666666666666655455677777888888877776777776663222   33344555666666666666


Q ss_pred             HHHHHH
Q 010881          307 ELFMRM  312 (498)
Q Consensus       307 ~~~~~m  312 (498)
                      -++.++
T Consensus        91 ~Ly~~~   96 (143)
T PF00637_consen   91 YLYSKL   96 (143)
T ss_dssp             HHHHCC
T ss_pred             HHHHHc
Confidence            666554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=92.73  E-value=0.56  Score=41.85  Aligned_cols=61  Identities=21%  Similarity=0.194  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ++..++..+...|+++.+.+.+++.++.+|-+...|..++.+|.+.|+...|++.|+.+.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            4455556666666666666666666666666666666666666666666666666666654

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=92.70  E-value=9.7  Score=36.47  Aligned_cols=113  Identities=12%  Similarity=0.012  Sum_probs=79.5

Q ss_pred             hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881            3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQM   79 (498)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m   79 (498)
                      ..+++++.+..+.-.|+....-+  .++...  |+++.+.+.+....   .....+..++++..-+.|+++.|..+-+-|
T Consensus       308 as~~~~~~lr~~~~~p~~i~l~~--~i~~~l--g~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~  383 (831)
T PRK15180        308 ASQQLFAALRNQQQDPVLIQLRS--VIFSHL--GYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMM  383 (831)
T ss_pred             HHHHHHHHHHhCCCCchhhHHHH--HHHHHh--hhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHH
Confidence            45788888888776666654443  445666  99999998887654   345667788888888999999999998888


Q ss_pred             HHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 010881           80 LRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE  120 (498)
Q Consensus        80 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  120 (498)
                      ....+. ++..........-..|-++++...++++....++
T Consensus       384 l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~  423 (831)
T PRK15180        384 LSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE  423 (831)
T ss_pred             hccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence            876554 3333333333344557788888888888765544

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.69  E-value=0.41  Score=29.06  Aligned_cols=32  Identities=22%  Similarity=0.190  Sum_probs=26.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPN  320 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  320 (498)
                      .+|..+...|...|++++|.++|++.++.  .|+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~   33 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPD   33 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC
Confidence            35677888899999999999999999884  455

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.57  E-value=14  Score=37.83  Aligned_cols=147  Identities=7%  Similarity=0.002  Sum_probs=75.8

Q ss_pred             HHHHHHhCCCchHHHHHHHHhHHCCCCC---CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 010881           59 MIRGFAEKNEPIKAFALYKQMLRSDFLP---NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT  135 (498)
Q Consensus        59 li~~~~~~~~~~~A~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  135 (498)
                      -|+.+.+.+.+++|++.-+.-..  ..|   -.......+..+...|+++.|-...-.|...    +..-|...+..+..
T Consensus       362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e  435 (846)
T KOG2066|consen  362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE  435 (846)
T ss_pred             hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence            35566677888888877665433  333   2234566677777778888777766665432    33334444444444


Q ss_pred             CCChhhHHHHhhccCC-CChhhHHHHHHHHHccCCHHHHHHHHhhCCC--------------------CChhHHHHHHHH
Q 010881          136 CNCMDPARKLFDMSVN-RDVISWTSLINGYAKSGQISIARQMFDKMPE--------------------KNAVSWSAMING  194 (498)
Q Consensus       136 ~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--------------------~~~~~~~~li~~  194 (498)
                      .++......++=.... .++..|..++..+.. .+...-.+...+.+.                    .+...-..|+..
T Consensus       436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~L  514 (846)
T KOG2066|consen  436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHL  514 (846)
T ss_pred             ccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHH
Confidence            4444333333222221 244455555555554 232222222222210                    122233446667


Q ss_pred             HHhCCCHhHHHHHHHHHH
Q 010881          195 YVQVDLFKEALEHFNYMQ  212 (498)
Q Consensus       195 ~~~~g~~~~a~~~~~~m~  212 (498)
                      |...+++.+|+..+-..+
T Consensus       515 Yl~d~~Y~~Al~~ylklk  532 (846)
T KOG2066|consen  515 YLYDNKYEKALPIYLKLQ  532 (846)
T ss_pred             HHHccChHHHHHHHHhcc
Confidence            777777777777665553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.53  E-value=4.4  Score=32.06  Aligned_cols=19  Identities=26%  Similarity=0.240  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHHHhcCCCCc
Q 010881          381 VDLGKETVESLVERSLDHE  399 (498)
Q Consensus       381 ~~~A~~~~~~~~~~~~~~~  399 (498)
                      ...|..-|+.+++.-|++.
T Consensus       115 ~~~A~~~f~~lv~~yP~S~  133 (142)
T PF13512_consen  115 ARQAFRDFEQLVRRYPNSE  133 (142)
T ss_pred             HHHHHHHHHHHHHHCcCCh
Confidence            5678888888888888865

>PRK09687 putative lyase; Provisional

Probab=92.37  E-value=8.4  Score=34.95  Aligned_cols=226  Identities=11%  Similarity=0.022  Sum_probs=119.4

Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCH----hHHHHHHHHHHHcCCCCCHHHHHHH
Q 010881          151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLF----KEALEHFNYMQLCGFRPNHAGIVGA  226 (498)
Q Consensus       151 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~g~~p~~~~~~~l  226 (498)
                      .+|.......+.++...|..+-...+..-+..+|...-...+.++...|+.    .++...+..+...  .|+...-...
T Consensus        34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A  111 (280)
T PRK09687         34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA  111 (280)
T ss_pred             CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence            344444445555555555433333333333344555555556666666653    4566666665332  3454444444


Q ss_pred             HHHHhccCChHH--HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcC-ChH
Q 010881          227 LTACAFLGALDQ--GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHD-QSA  303 (498)
Q Consensus       227 l~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~  303 (498)
                      +.++...+....  -......+...-..++..+-...+.++.+.++.+....+..-+..+|...-..-+.++.+.+ ...
T Consensus       112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~  191 (280)
T PRK09687        112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP  191 (280)
T ss_pred             HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence            555444332110  01112222221123456666677777777776544444444444566655555555665543 244


Q ss_pred             HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 010881          304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDL  383 (498)
Q Consensus       304 ~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  383 (498)
                      .+...+..+...               ++..+-...+.++.+.|+..-.-.+.+.+. .++.  ....+.++...|+. +
T Consensus       192 ~~~~~L~~~L~D---------------~~~~VR~~A~~aLg~~~~~~av~~Li~~L~-~~~~--~~~a~~ALg~ig~~-~  252 (280)
T PRK09687        192 DIREAFVAMLQD---------------KNEEIRIEAIIGLALRKDKRVLSVLIKELK-KGTV--GDLIIEAAGELGDK-T  252 (280)
T ss_pred             HHHHHHHHHhcC---------------CChHHHHHHHHHHHccCChhHHHHHHHHHc-CCch--HHHHHHHHHhcCCH-h
Confidence            566666666542               245667777888888887543333344443 2332  34566777777774 6


Q ss_pred             HHHHHHHHHhcCCC
Q 010881          384 GKETVESLVERSLD  397 (498)
Q Consensus       384 A~~~~~~~~~~~~~  397 (498)
                      |...+..+.+..|+
T Consensus       253 a~p~L~~l~~~~~d  266 (280)
T PRK09687        253 LLPVLDTLLYKFDD  266 (280)
T ss_pred             HHHHHHHHHhhCCC
Confidence            88888888776664

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.15  E-value=7.3  Score=33.80  Aligned_cols=55  Identities=24%  Similarity=0.243  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC----C-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM----P-I-EPDNYVLGALLNACRVHGDVDLGKETVE  389 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~-~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~  389 (498)
                      ..|...|-.+.-..|+..|...++.-    + . .-+..+...|+.+| ..|+.+.+..++.
T Consensus       191 k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  191 KAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            44666677777788899999998874    1 1 22577888888887 5677777766653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.02  E-value=0.41  Score=27.55  Aligned_cols=26  Identities=15%  Similarity=0.185  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQ  212 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~  212 (498)
                      +|+.|...|.+.|++++|+++|++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46677788888888888888888754

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.02  E-value=12  Score=36.13  Aligned_cols=145  Identities=14%  Similarity=0.117  Sum_probs=78.2

Q ss_pred             HHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881           59 MIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC  138 (498)
Q Consensus        59 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  138 (498)
                      +|.-.-+..+++.-++.-++..+  +.||-.+.-.++ +--......++++++++.++.|-..  .-.....   ...|.
T Consensus       174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE~~--lg~s~~~---~~~g~  245 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGEAS--LGKSQFL---QHHGH  245 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHHHh--hchhhhh---hcccc
Confidence            34334456677777777777766  446543322222 2223455788888888887765110  0000000   01111


Q ss_pred             hhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881          139 MDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE--K---NAVSWSAMINGYVQVDLFKEALEHFNYMQL  213 (498)
Q Consensus       139 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  213 (498)
                      .-  .....+-..+-..+-..+..++-+.|+.++|++.|++|.+  |   +......|+.++...+.+.++..++.+-.+
T Consensus       246 ~~--e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  246 FW--EAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hh--hhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            00  0011111111122233456666778888888888888863  2   233566788888888888888888887644

The molecular function of this protein is uncertain.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.99  E-value=1  Score=36.26  Aligned_cols=83  Identities=20%  Similarity=0.177  Sum_probs=56.4

Q ss_pred             HHHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          334 QHYGCLVDLL---GRAGMLEAAKKVVREM-PIEPDNYVLGAL-LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       334 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                      .+.+.|+..+   .+.++.+++..++..+ -++|.......+ ...+...|++.+|..+++.+.+..|..+..-..++.+
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            4555555544   4678888999888888 455644433222 2346788999999999999888878777656666666


Q ss_pred             hHhcCCcc
Q 010881          409 YASTEQWN  416 (498)
Q Consensus       409 ~~~~g~~~  416 (498)
                      +...|+.+
T Consensus        88 L~~~~D~~   95 (160)
T PF09613_consen   88 LYALGDPS   95 (160)
T ss_pred             HHHcCChH
Confidence            66666643

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.93  E-value=2.3  Score=34.62  Aligned_cols=49  Identities=12%  Similarity=0.086  Sum_probs=23.0

Q ss_pred             ccCCHHHHHHHHhhCCCCChhHHHHHH-----HHHHhCCCHhHHHHHHHHHHHc
Q 010881          166 KSGQISIARQMFDKMPEKNAVSWSAMI-----NGYVQVDLFKEALEHFNYMQLC  214 (498)
Q Consensus       166 ~~~~~~~A~~~~~~~~~~~~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~  214 (498)
                      +.+..++|+.-|..+.+.+.-.|-.|.     ......|+...|...|++.-..
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d  123 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD  123 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence            334455555555555544333333322     2334455555555555555443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.92  E-value=0.94  Score=35.81  Aligned_cols=80  Identities=14%  Similarity=0.150  Sum_probs=45.2

Q ss_pred             HHHHHHHHHH---hhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          334 QHYGCLVDLL---GRAGMLEAAKKVVREM-PIEPD---NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       334 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      ...+.|++..   ...++.+++..+++.+ -++|+   ..++...  .+...|++++|.++++.+.+..+..+..-..++
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A   85 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAPPYGKALLA   85 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCchHHHHHHH
Confidence            3444444433   3467777777777766 33343   3333222  346677777777777777766666554444555


Q ss_pred             HHhHhcCCc
Q 010881          407 NIYASTEQW  415 (498)
Q Consensus       407 ~~~~~~g~~  415 (498)
                      .++.-.|+.
T Consensus        86 ~CL~al~Dp   94 (153)
T TIGR02561        86 LCLNAKGDA   94 (153)
T ss_pred             HHHHhcCCh
Confidence            555555553

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=91.84  E-value=0.45  Score=28.26  Aligned_cols=28  Identities=32%  Similarity=0.387  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                      .+++.|...|...|++++|+.+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4566666666777777777777766654

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=91.64  E-value=12  Score=35.21  Aligned_cols=27  Identities=11%  Similarity=0.032  Sum_probs=15.9

Q ss_pred             CCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010881          347 GMLEAAKKVVREM-PIEP-DNYVLGALLN  373 (498)
Q Consensus       347 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  373 (498)
                      +..+++...|.+. .+.| ....|..+..
T Consensus       272 ~~~~~~~~~~~~a~~~~~~~~k~~~~~a~  300 (352)
T PF02259_consen  272 ESSDEILKYYKEATKLDPSWEKAWHSWAL  300 (352)
T ss_pred             ccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence            6677777777776 4445 3444444443

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.47  E-value=3.5  Score=33.61  Aligned_cols=130  Identities=9%  Similarity=-0.002  Sum_probs=80.1

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH-
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY-TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL-  129 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-  129 (498)
                      +-..|...+. +++.+..++|+.-|.++.+.|...-+. .-..........|+-..|...|.++-.....|-..--..- 
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            4445555554 356778888888888888765431111 0111222356778888888888888776555544311111 


Q ss_pred             --HHHHHhCCChhhHHHHhhccCCC-C---hhhHHHHHHHHHccCCHHHHHHHHhhCCC
Q 010881          130 --LHLYATCNCMDPARKLFDMSVNR-D---VISWTSLINGYAKSGQISIARQMFDKMPE  182 (498)
Q Consensus       130 --~~~~~~~g~~~~a~~~~~~~~~~-~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~  182 (498)
                        .-.+.-.|.++....-.+.+..+ +   ...-..|.-+-.+.|++..|...|..+..
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence              12345678888887777665432 2   23345666667788999999988887764

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=91.23  E-value=6.9  Score=31.65  Aligned_cols=111  Identities=14%  Similarity=0.057  Sum_probs=69.1

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 010881          296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNA  374 (498)
Q Consensus       296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~  374 (498)
                      -...++.+++..++..+.-  +.|.           ....-..-...+...|++.+|..+|+++ .-.|....-..|+..
T Consensus        20 al~~~~~~D~e~lL~ALrv--LRP~-----------~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen   20 ALRLGDPDDAEALLDALRV--LRPE-----------FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHccCChHHHHHHHHHHHH--hCCC-----------chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3556789999999999876  3454           2333333455677899999999999999 434555555566666


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881          375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV  421 (498)
Q Consensus       375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  421 (498)
                      |....+-..=...-+++++.++++.  -..++..+....+...|...
T Consensus        87 CL~~~~D~~Wr~~A~evle~~~d~~--a~~Lv~~Ll~~~~~~~a~~~  131 (160)
T PF09613_consen   87 CLYALGDPSWRRYADEVLESGADPD--ARALVRALLARADLEPAHEA  131 (160)
T ss_pred             HHHHcCChHHHHHHHHHHhcCCChH--HHHHHHHHHHhccccchhhh
Confidence            6555444444455566666665432  33455555555554544443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=91.21  E-value=15  Score=35.59  Aligned_cols=93  Identities=11%  Similarity=0.073  Sum_probs=54.1

Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      |....-+++..+..+..+.-...+..+|+.-|  -+...|..++++|... ..++-..+|+++.+..+ .|+..-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence            44555566777777777777777777777643  4556666677766666 55556666666666542 23333333444


Q ss_pred             HHHhcCCHHHHHHHHhhC
Q 010881          264 MYAKCGCIETACSVFDSM  281 (498)
Q Consensus       264 ~~~~~g~~~~A~~~~~~~  281 (498)
                      .|-+ ++.+.+...|.++
T Consensus       141 ~yEk-ik~sk~a~~f~Ka  157 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKA  157 (711)
T ss_pred             HHHH-hchhhHHHHHHHH
Confidence            3333 5555555555543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.18  E-value=11  Score=34.09  Aligned_cols=19  Identities=16%  Similarity=0.036  Sum_probs=13.5

Q ss_pred             HHHhcCChHHHHHHHHHHH
Q 010881          295 GLANHDQSASAIELFMRMQ  313 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~  313 (498)
                      .+.+.++++.|..+|+-..
T Consensus       255 ~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  255 KHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHhhcCHHHHHHHHHHHH
Confidence            4566788888888887543

It is also involved in sporulation [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.91  E-value=12  Score=33.67  Aligned_cols=53  Identities=8%  Similarity=0.029  Sum_probs=39.4

Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC
Q 010881          230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN  283 (498)
Q Consensus       230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  283 (498)
                      ....|+..+|...|+...... +-+......+..+|...|+.+.|..++..++.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~  196 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPL  196 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence            455677777777777776664 44556667788888888888888888888775

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.88  E-value=0.56  Score=26.03  Aligned_cols=28  Identities=29%  Similarity=0.292  Sum_probs=18.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          370 ALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      .+..++.+.|++++|.+.|+++++..|+
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4455566667777777777777766665

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=90.87  E-value=0.91  Score=41.02  Aligned_cols=98  Identities=8%  Similarity=-0.022  Sum_probs=73.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHH
Q 010881          294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-PDNYVLGAL  371 (498)
Q Consensus       294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l  371 (498)
                      .-|.++|.+++|+..|......  .|-           +.+++..-..+|.+...+..|+.-.... .+. .-...|..-
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~--~P~-----------NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR  171 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAV--YPH-----------NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRR  171 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhcc--CCC-----------CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHH
Confidence            4688999999999999887653  221           6888999999999999999888776655 211 234455555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 010881          372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVL  404 (498)
Q Consensus       372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  404 (498)
                      +.+-...|+..+|.+-++.++++.|.+...--.
T Consensus       172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~  204 (536)
T KOG4648|consen  172 MQARESLGNNMEAKKDCETVLALEPKNIELKKS  204 (536)
T ss_pred             HHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHH
Confidence            566666789999999999999999997654333

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.28  E-value=2.2  Score=38.12  Aligned_cols=81  Identities=17%  Similarity=0.308  Sum_probs=65.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881          255 IILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP  331 (498)
Q Consensus       255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~  331 (498)
                      ..++..++..+..+|+++.+...++.+...   +...|..++.+|.+.|+...|+..|+++...       +....|+.|
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~-------~~edlgi~P  225 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT-------LAEELGIDP  225 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH-------hhhhcCCCc
Confidence            456778888999999999999999988753   6678999999999999999999999998774       233447777


Q ss_pred             ChHHHHHHHHH
Q 010881          332 GVQHYGCLVDL  342 (498)
Q Consensus       332 ~~~~~~~l~~~  342 (498)
                      ...+.......
T Consensus       226 ~~~~~~~y~~~  236 (280)
T COG3629         226 APELRALYEEI  236 (280)
T ss_pred             cHHHHHHHHHH
Confidence            77777666655

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.97  E-value=1.8  Score=38.72  Aligned_cols=101  Identities=15%  Similarity=0.233  Sum_probs=63.4

Q ss_pred             CCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC-CCCc-----chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCc
Q 010881           15 GTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-YRTT-----FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNN   88 (498)
Q Consensus        15 g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~~~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~   88 (498)
                      |.+....+...++..-...  .+++.++..+-++. +|+.     .+-.++++.+. .-++++++.++..=++.|+-||.
T Consensus        59 g~~~s~~~Vd~~V~v~~~~--~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dq  135 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSR--EEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQ  135 (418)
T ss_pred             CCCcceeehhhhhhccccc--cchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccch
Confidence            3444445555555554444  67777777766554 2221     12223333333 23667888877777777888888


Q ss_pred             chHHHHHHHHHccCCcHHHHHHHHHHHHhC
Q 010881           89 YTFSFILRACADTSCLFVGLICHAQVIRLG  118 (498)
Q Consensus        89 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~  118 (498)
                      +++..+|+.+.+.+++..|.++.-.|+...
T Consensus       136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            888888888888888888887777766543

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.92  E-value=6  Score=33.01  Aligned_cols=63  Identities=13%  Similarity=0.235  Sum_probs=36.8

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA--GIVGALTACAFLGALDQGRWIHAYVDR  248 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~  248 (498)
                      ..+..+...|++.|+.++|++.|.++.+....|...  .+..+|..+...+++..+......+..
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            345566666777777777777777766654333322  344555555666666666666555443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=89.63  E-value=14  Score=32.51  Aligned_cols=59  Identities=14%  Similarity=-0.084  Sum_probs=34.3

Q ss_pred             HHHHHHhCCCHhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 010881          191 MINGYVQVDLFKEALEHFNYMQLCGF--RPNHAGIVGALTACAFLGALDQGRWIHAYVDRN  249 (498)
Q Consensus       191 li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  249 (498)
                      -+..-.+.|++++|.+.|+.+.....  +-...+...++-++.+.++++.|....++..+.
T Consensus        40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            33445567777777777777765421  112334445555556666666666666555443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.54  E-value=12  Score=32.35  Aligned_cols=63  Identities=14%  Similarity=0.081  Sum_probs=37.9

Q ss_pred             HHHHHhhc-CCHHHHHHHHHhC-----CCCCCHHHHHHHH---HHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881          339 LVDLLGRA-GMLEAAKKVVREM-----PIEPDNYVLGALL---NACRVHGDVDLGKETVESLVERSLDHEGV  401 (498)
Q Consensus       339 l~~~~~~~-g~~~~A~~~~~~~-----~~~p~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  401 (498)
                      +...|-.- .++++|+..|++.     +-+.+...--+++   ..-...+++.+|+++|+++.....+++..
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LL  190 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLL  190 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHH
Confidence            34444332 5667777777665     2222222222333   33466789999999999998877665533

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=89.48  E-value=12  Score=34.23  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=13.8

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHH
Q 010881          202 KEALEHFNYMQLCGFRPNHAGIVG  225 (498)
Q Consensus       202 ~~a~~~~~~m~~~g~~p~~~~~~~  225 (498)
                      ++.+.+++.|.+.|+.-+..+|.+
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~la  102 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLA  102 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHH
Confidence            344556666666666666555544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=89.32  E-value=3.1  Score=34.73  Aligned_cols=64  Identities=8%  Similarity=-0.060  Sum_probs=48.8

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC--cchHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 010881           54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN--NYTFSFILRACADTSCLFVGLICHAQVIRL  117 (498)
Q Consensus        54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  117 (498)
                      ..+..+...|++.|+.+.|++.|.++++....|.  ...+..+|+.....+++..+.....++...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4677888889999999999999999887654443  334667778888888888888887776554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=89.00  E-value=4.6  Score=33.79  Aligned_cols=103  Identities=13%  Similarity=0.079  Sum_probs=72.9

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010881          295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALL  372 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  372 (498)
                      -+...|++++|..-|.+.++.  .|.-      .-..-...|..-..++.+.+.++.|+.-..+. .+.| ....+..-.
T Consensus       104 ~~F~ngdyeeA~skY~~Ale~--cp~~------~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRA  175 (271)
T KOG4234|consen  104 ELFKNGDYEEANSKYQEALES--CPST------STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRA  175 (271)
T ss_pred             HhhhcccHHHHHHHHHHHHHh--Cccc------cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHH
Confidence            466788888888888888774  2220      00112445666677888999999998887776 5556 344444445


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                      .+|.+..+++.|++-|+++++.+|....+-...
T Consensus       176 eayek~ek~eealeDyKki~E~dPs~~ear~~i  208 (271)
T KOG4234|consen  176 EAYEKMEKYEEALEDYKKILESDPSRREAREAI  208 (271)
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHH
Confidence            688899999999999999999999865444333

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=88.76  E-value=5.1  Score=31.15  Aligned_cols=66  Identities=12%  Similarity=0.019  Sum_probs=44.7

Q ss_pred             CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCCCc-hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          362 EPDNYVLGALLNACRVHG---DVDLGKETVESLVE-RSLDHE-GVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       362 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .++..+-..+..++.+..   +..+.+.+++.+.+ -.|... ...+.|+-++.+.++++.++++.+...+
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~   99 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE   99 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence            455556666666666655   45667778888876 334432 3344677788889999999998877765

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=88.60  E-value=6.1  Score=36.11  Aligned_cols=126  Identities=10%  Similarity=0.092  Sum_probs=76.4

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCC----ChhHHHHHhhhcCCC-------CcchHHHHHHHHHhCCCc-
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIG----DLSHGYRLFVCLQYR-------TTFIWNTMIRGFAEKNEP-   69 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g----~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~-   69 (498)
                      ++...+++.+.+.|+..+..++-+-..+.......    ....|..+++.|.+.       +-.++..++..  ...++ 
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            45678899999999998887776644444441101    356788888888742       22344455433  33333 


Q ss_pred             ---hHHHHHHHHhHHCCCCCCcc--hHHHHHHHHHccCC--cHHHHHHHHHHHHhCCCCchhHHHHH
Q 010881           70 ---IKAFALYKQMLRSDFLPNNY--TFSFILRACADTSC--LFVGLICHAQVIRLGWESYDFVLNGL  129 (498)
Q Consensus        70 ---~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l  129 (498)
                         +.+..+|+.+.+.|+..+..  ..+.++..+.....  ..++..+++.+.+.|.++....|..+
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l  223 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL  223 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence               45677788887777766443  33444444333322  34677788888888877666665443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.25  E-value=7.2  Score=38.47  Aligned_cols=151  Identities=13%  Similarity=0.077  Sum_probs=84.5

Q ss_pred             ccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010881          166 KSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY  245 (498)
Q Consensus       166 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  245 (498)
                      -.|+++.|..++..+++   ...+.+...+.+.|-.++|+.+-       ..|+. -|    ....+.|+++.|.++..+
T Consensus       598 mrrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e  662 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVE  662 (794)
T ss_pred             hhccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHh
Confidence            34667777666666553   23344555666666666665542       12221 11    222355666666666543


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881          246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE  325 (498)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  325 (498)
                      ..      +..-|..|.++..+.+++..|.+.|.+...     |..|+-.+...|+.+....+-....+.|         
T Consensus       663 ~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~~g---------  722 (794)
T KOG0276|consen  663 AN------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKKQG---------  722 (794)
T ss_pred             hc------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHhhc---------
Confidence            22      455677777777777777777777766543     4455555666666554444444444433         


Q ss_pred             hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 010881          326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP  360 (498)
Q Consensus       326 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  360 (498)
                               ..|....+|...|+++++.+++.+-+
T Consensus       723 ---------~~N~AF~~~~l~g~~~~C~~lLi~t~  748 (794)
T KOG0276|consen  723 ---------KNNLAFLAYFLSGDYEECLELLISTQ  748 (794)
T ss_pred             ---------ccchHHHHHHHcCCHHHHHHHHHhcC
Confidence                     12233445566777777777776653

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=88.10  E-value=0.79  Score=25.98  Aligned_cols=24  Identities=17%  Similarity=0.137  Sum_probs=16.4

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHH
Q 010881          252 ELDIILGTAIIDMYAKCGCIETAC  275 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~  275 (498)
                      |-+..+|+.+..+|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            556667777777777777777664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.06  E-value=0.75  Score=25.84  Aligned_cols=27  Identities=11%  Similarity=0.265  Sum_probs=17.7

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881           55 IWNTMIRGFAEKNEPIKAFALYKQMLR   81 (498)
Q Consensus        55 ~~~~li~~~~~~~~~~~A~~~~~~m~~   81 (498)
                      +|..+...+...|++++|+..|++.++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            456666667777777777777777665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.87  E-value=3.3  Score=37.23  Aligned_cols=91  Identities=11%  Similarity=-0.011  Sum_probs=61.3

Q ss_pred             HHHHHHHHccCCHHHHHHHHhhCCC-------CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010881          158 TSLINGYAKSGQISIARQMFDKMPE-------KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTAC  230 (498)
Q Consensus       158 ~~li~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  230 (498)
                      ..++..-....+++.++..+-++..       ++...+ ..++. +-.-++++++.++..=.+-|+-||.++++.+|..+
T Consensus        68 d~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~f  145 (418)
T KOG4570|consen   68 DRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSF  145 (418)
T ss_pred             hhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccchhhHHHHHHHH
Confidence            3333333344556666666555542       121111 22222 23446789999988888999999999999999999


Q ss_pred             hccCChHHHHHHHHHHHHhC
Q 010881          231 AFLGALDQGRWIHAYVDRNG  250 (498)
Q Consensus       231 ~~~~~~~~a~~~~~~~~~~~  250 (498)
                      .+.+++.+|.++.-.|....
T Consensus       146 lk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  146 LKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HhcccHHHHHHHHHHHHHHH
Confidence            99999999988887776554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=87.84  E-value=16  Score=31.16  Aligned_cols=26  Identities=19%  Similarity=0.170  Sum_probs=16.2

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVRE  358 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~  358 (498)
                      .+||..|..-+...|+.++|..+|+-
T Consensus       237 TEtyFYL~K~~l~~G~~~~A~~LfKL  262 (297)
T COG4785         237 TETYFYLGKYYLSLGDLDEATALFKL  262 (297)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHH
Confidence            35566666666666666666666654

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.79  E-value=5  Score=31.90  Aligned_cols=54  Identities=6%  Similarity=0.071  Sum_probs=40.4

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          376 RVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...++.+++..+++.+.-+.|+.+..-..-+..+...|+|++|.++|+...+.+
T Consensus        21 L~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        21 LRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            446777777777777777777777777777777777788888888777776654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=87.77  E-value=6.1  Score=37.73  Aligned_cols=107  Identities=10%  Similarity=0.063  Sum_probs=81.2

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881          335 HYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       335 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      ........+...|+++.+.+.+...  -+.....+..++++.....|+++.|......|+.....++......+......
T Consensus       325 ~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l  404 (831)
T PRK15180        325 LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADAL  404 (831)
T ss_pred             hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHH
Confidence            3333445567789999999999877  23346678889999999999999999999999988887777666666666677


Q ss_pred             CCcchHHHHHHhhhhCCccccCceeEEEECC
Q 010881          413 EQWNGVEKVRRGMEDNEVRKVPGCSLIEVDG  443 (498)
Q Consensus       413 g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~  443 (498)
                      |-+|++.-.|++......+...|  |+.+..
T Consensus       405 ~~~d~~~~~wk~~~~~~~~~~~g--~v~~~~  433 (831)
T PRK15180        405 QLFDKSYHYWKRVLLLNPETQSG--WVNFLS  433 (831)
T ss_pred             hHHHHHHHHHHHHhccCChhccc--ceeeec
Confidence            88999999999987665544444  554443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.05  E-value=0.79  Score=25.63  Aligned_cols=29  Identities=7%  Similarity=0.004  Sum_probs=24.6

Q ss_pred             hHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          400 GVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ..+..++.++...|++++|++.+++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            46788999999999999999999988754

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK11619 lytic murein transglycosylase; Provisional

Probab=87.03  E-value=40  Score=34.81  Aligned_cols=75  Identities=9%  Similarity=-0.071  Sum_probs=37.3

Q ss_pred             HHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhCCCH
Q 010881          126 LNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP---EKNAVSWSAMINGYVQVDLF  201 (498)
Q Consensus       126 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~  201 (498)
                      -...+..+.+.++++....++..- ..+...-.....+....|+.++|......+=   ...+...+.++..+.+.|.+
T Consensus       102 r~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~l  179 (644)
T PRK11619        102 QSRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQ  179 (644)
T ss_pred             HHHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCC
Confidence            344445555666777666633222 2344444555566666676655544444331   12344455555555544443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=87.00  E-value=40  Score=34.71  Aligned_cols=213  Identities=14%  Similarity=0.080  Sum_probs=91.5

Q ss_pred             cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCC-------cHHHHHHHHHHHHhCCCCchhH
Q 010881           53 TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC-------LFVGLICHAQVIRLGWESYDFV  125 (498)
Q Consensus        53 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~  125 (498)
                      ...| .+|-.|.|.|++++|.++..+... ........|...+..+....+       -++...-+++..+.....|++=
T Consensus       112 ~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~-~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK  189 (613)
T PF04097_consen  112 DPIW-ALIYYCLRCGDYDEALEVANENRN-QFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYK  189 (613)
T ss_dssp             EEHH-HHHHHHHTTT-HHHHHHHHHHTGG-GS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHH
T ss_pred             CccH-HHHHHHHhcCCHHHHHHHHHHhhh-hhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHH
Confidence            3445 456678899999999999866554 355566778888888876532       2344555555555443223321


Q ss_pred             HHHHHHHHHhCCChh----h----HHHHh--hc-cC---C-C-----ChhhHHHHHHHHHccCCHHHHHHHHhhCCCCCh
Q 010881          126 LNGLLHLYATCNCMD----P----ARKLF--DM-SV---N-R-----DVISWTSLINGYAKSGQISIARQMFDKMPEKNA  185 (498)
Q Consensus       126 ~~~l~~~~~~~g~~~----~----a~~~~--~~-~~---~-~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~  185 (498)
                      + ++.....++.-.+    +    .++.+  +- +.   . .     +..++..|=....+-     ....|..  ..++
T Consensus       190 ~-AvY~ilg~cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~-----Ge~~F~~--~~~p  261 (613)
T PF04097_consen  190 R-AVYKILGRCDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKY-----GESHFNA--GSNP  261 (613)
T ss_dssp             H-HHHHHHHT--CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH------GGGCTT------
T ss_pred             H-HHHHHHhcCCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHh-----chhhccc--chhH
Confidence            1 1111112222111    1    11110  00 00   0 0     011111111111100     1112222  1122


Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC-CCCChhHHHHHHHH
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNG-IELDIILGTAIIDM  264 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~  264 (498)
                      ..|   ...+.-.|+++.|++++-.  ..+...+.+++.+.+..+.-.+-.+...   ..+.... -.|...-+..||..
T Consensus       262 ~~Y---f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~  333 (613)
T PF04097_consen  262 LLY---FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQ  333 (613)
T ss_dssp             --H---HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHH
T ss_pred             HHH---HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHH
Confidence            233   3445668999999998877  3345667777777776654333222211   2221111 01112456778888


Q ss_pred             HHh---cCCHHHHHHHHhhCCC
Q 010881          265 YAK---CGCIETACSVFDSMPN  283 (498)
Q Consensus       265 ~~~---~g~~~~A~~~~~~~~~  283 (498)
                      |++   ..+...|.+.|--+..
T Consensus       334 Y~~~F~~td~~~Al~Y~~li~~  355 (613)
T PF04097_consen  334 YTRSFEITDPREALQYLYLICL  355 (613)
T ss_dssp             HHHTTTTT-HHHHHHHHHGGGG
T ss_pred             HHHHHhccCHHHHHHHHHHHHH
Confidence            876   4578888888776654

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PRK10941 hypothetical protein; Provisional

Probab=87.00  E-value=5.7  Score=35.61  Aligned_cols=62  Identities=15%  Similarity=0.010  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ..+.+-.+|.+.++++.|+++.+.++...|+++.-+.--+-+|.+.|.+..|..=++...+.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            44556677888999999999999999999998877777888899999999988888777654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.63  E-value=0.91  Score=23.79  Aligned_cols=23  Identities=13%  Similarity=0.190  Sum_probs=14.5

Q ss_pred             HHHHHHHHhHhcCCcchHHHHHH
Q 010881          401 VHVLLSNIYASTEQWNGVEKVRR  423 (498)
Q Consensus       401 ~~~~l~~~~~~~g~~~~a~~~~~  423 (498)
                      +...++.++...|++++|.++++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            34556666666677666666654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=85.99  E-value=2.3  Score=36.62  Aligned_cols=84  Identities=10%  Similarity=-0.031  Sum_probs=62.5

Q ss_pred             hhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881          344 GRAGMLEAAKKVVREM-PIEPDN-YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV  421 (498)
Q Consensus       344 ~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  421 (498)
                      ....+++.|...|.+. -+.|+. ..|..=+..+.+..+++.+.+-..+++++.|+.....+.++..+.....+++|+..
T Consensus        21 f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~  100 (284)
T KOG4642|consen   21 FIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV  100 (284)
T ss_pred             cchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence            3445666677666665 566765 44555666777788888888888888888888888888888888888888888888


Q ss_pred             HHhhhh
Q 010881          422 RRGMED  427 (498)
Q Consensus       422 ~~~m~~  427 (498)
                      +.+..+
T Consensus       101 Lqra~s  106 (284)
T KOG4642|consen  101 LQRAYS  106 (284)
T ss_pred             HHHHHH
Confidence            887743

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=85.93  E-value=4.4  Score=25.78  Aligned_cols=50  Identities=6%  Similarity=-0.101  Sum_probs=35.8

Q ss_pred             HHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcC
Q 010881          401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLC  476 (498)
Q Consensus       401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g  476 (498)
                      ....++.++.+.|++++|.+..+.+.+.                          .|+.++.......+.+++.+.|
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdg   52 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDG   52 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccC
Confidence            3567788999999999999999988753                          3444555555555677887776

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.89  E-value=35  Score=34.62  Aligned_cols=50  Identities=6%  Similarity=-0.003  Sum_probs=24.9

Q ss_pred             CHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          380 DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       380 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      +...|..+++++.+.++.....-......+.. ++++.+...+..+.+.|.
T Consensus       379 ~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  379 NLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             CHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            56666777776666663221111122222233 666666655555555443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=85.76  E-value=37  Score=33.15  Aligned_cols=156  Identities=12%  Similarity=0.118  Sum_probs=77.1

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH  131 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  131 (498)
                      |-...-+++..+..+....-...+..+|...|  -+...|..++.+|... ..+.-..+++++++..+. |...-..|+.
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            33445556666666666666666666666633  4555666666666665 445556666666665543 3333333444


Q ss_pred             HHHhCCChhhHHHHhhccCCC------C---hhhHHHHHHHHHccCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHh
Q 010881          132 LYATCNCMDPARKLFDMSVNR------D---VISWTSLINGYAKSGQISIARQMFDKMPEK-----NAVSWSAMINGYVQ  197 (498)
Q Consensus       132 ~~~~~g~~~~a~~~~~~~~~~------~---~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~  197 (498)
                      .|-+ ++...+..+|.+...+      +   -..|..+...-  ..+.+....+..++...     ..+.+..+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            4433 5555555555443211      1   11333333211  13334444444333321     23334444445555


Q ss_pred             CCCHhHHHHHHHHHHHc
Q 010881          198 VDLFKEALEHFNYMQLC  214 (498)
Q Consensus       198 ~g~~~~a~~~~~~m~~~  214 (498)
                      ..++++|++++...++.
T Consensus       218 ~eN~~eai~Ilk~il~~  234 (711)
T COG1747         218 NENWTEAIRILKHILEH  234 (711)
T ss_pred             ccCHHHHHHHHHHHhhh
Confidence            56666666666655554

>smart00028 TPR Tetratricopeptide repeats

Probab=85.75  E-value=1.6  Score=23.36  Aligned_cols=29  Identities=34%  Similarity=0.165  Sum_probs=17.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881          368 LGALLNACRVHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  396 (498)
                      |..+...+...++++.|...++..++..|
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            44455555666666666666666665544

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=85.66  E-value=4.3  Score=25.84  Aligned_cols=33  Identities=15%  Similarity=0.125  Sum_probs=26.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881          369 GALLNACRVHGDVDLGKETVESLVERSLDHEGV  401 (498)
Q Consensus       369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  401 (498)
                      -.+.-++.+.|+++.|.+..+.+++.+|++..+
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa   37 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA   37 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence            345668899999999999999999999998753

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=85.19  E-value=53  Score=34.47  Aligned_cols=190  Identities=13%  Similarity=0.020  Sum_probs=98.3

Q ss_pred             hccCChHHHHHHHHHHHHhCCCCChh-------HHHHHHH-HHHhcCCHHHHHHHHhhCCC--------CChhHHHHHHH
Q 010881          231 AFLGALDQGRWIHAYVDRNGIELDII-------LGTAIID-MYAKCGCIETACSVFDSMPN--------RDVFAYTSLIS  294 (498)
Q Consensus       231 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~-~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~  294 (498)
                      ....++++|..+..++...--.|+..       .+++|-. .....|+++.|.++-+....        ..+..+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            45567777777777765543222221       2333221 22346788887776665432        35567777778


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH--HHHHhhcCCHHHHH--HHHHhC-----CCCC--
Q 010881          295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL--VDLLGRAGMLEAAK--KVVREM-----PIEP--  363 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~--~~~~~~-----~~~p--  363 (498)
                      +..-.|++++|..+..+..+..        +.+++.+ ...|..+  ...+...|....+.  ..|...     +-.|  
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a--------~~~~~~~-l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~  576 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMA--------RQHDVYH-LALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRH  576 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHH--------HHcccHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccc
Confidence            8888899999888877665531        1111111 1122222  23345566333222  222222     1112  


Q ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCCCchH---HHHHHHHhHhcCCcchHHHHHHhhhhCCccc
Q 010881          364 --DNYVLGALLNACRVHGDVDLGKETVESLVE----RSLDHEGV---HVLLSNIYASTEQWNGVEKVRRGMEDNEVRK  432 (498)
Q Consensus       364 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~  432 (498)
                        -..++..++.++.+   .+.+..-.....+    ..|.+-..   +..|+......|+.++|...+.++.......
T Consensus       577 ~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~  651 (894)
T COG2909         577 EFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNG  651 (894)
T ss_pred             hhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCC
Confidence              22334444444443   4444443333333    22332222   2367788888899999988888887654443

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=84.80  E-value=13  Score=27.20  Aligned_cols=59  Identities=17%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             HHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881          162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI  223 (498)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  223 (498)
                      ..+...|++++|..+.+...-||...|-.|.  -.+.|..+++..-+.+|...| .|....|
T Consensus        47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALc--e~rlGl~s~l~~rl~rla~sg-~p~lq~F  105 (115)
T TIGR02508        47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALC--EWRLGLGSALESRLNRLAASG-DPRLQTF  105 (115)
T ss_pred             HHHHccchHHHHHHhcCCCCCchHHHHHHHH--HHhhccHHHHHHHHHHHHhCC-CHHHHHH
Confidence            3456678888888888777777777776654  346676676666666676665 4444444

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.76  E-value=11  Score=37.13  Aligned_cols=132  Identities=15%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             HHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHH
Q 010881          125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEA  204 (498)
Q Consensus       125 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a  204 (498)
                      ..+.++..+.+.|..++|+++--     |+..   -.....+.|+++.|.++..+..  +..-|..|.++..+.+++..|
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA  685 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLA  685 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhH
Confidence            34455555556666655554421     1111   1122334567777766655443  556677777777777877777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881          205 LEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM  281 (498)
Q Consensus       205 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  281 (498)
                      .+.|.....         |..|+-.+...|+-+....+-....+.| ..     |...-+|...|+++++.+++..-
T Consensus       686 ~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g-~~-----N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  686 SECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG-KN-----NLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             HHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc-cc-----chHHHHHHHcCCHHHHHHHHHhc
Confidence            777766543         3445555556666655555555555554 22     23334555667777777766543

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=84.44  E-value=11  Score=27.45  Aligned_cols=45  Identities=20%  Similarity=0.180  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 010881          203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVD  247 (498)
Q Consensus       203 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  247 (498)
                      ++.+-++.+....+.|+.....+.+.+|.+.+++..|.++++-++
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            444444444445555555555555555555555555555555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=84.22  E-value=47  Score=33.06  Aligned_cols=339  Identities=11%  Similarity=0.021  Sum_probs=178.6

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcch-HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHH
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYT-FSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLL  130 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  130 (498)
                      +-..|..+|.---...+.+.+..++..++.  -.|..+. |.....-=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~--kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~  120 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFLS--KYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL  120 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHHh--hCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence            445676666544444445666666776664  2355443 333444446778899999999998875 456777776666


Q ss_pred             HHHH-hCCChhhHHHHhhccCC------CChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHh---C--
Q 010881          131 HLYA-TCNCMDPARKLFDMSVN------RDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQ---V--  198 (498)
Q Consensus       131 ~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~--  198 (498)
                      ..+. ..|+.+...+.|+....      .....|...|.--..++++.....+|+...+-....|+..-.-|.+   .  
T Consensus       121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~  200 (577)
T KOG1258|consen  121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNE  200 (577)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCC
Confidence            5544 46777778888876543      2455677777777788888888888888876444444433332221   1  


Q ss_pred             ----CCHhHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhc-cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010881          199 ----DLFKEALEHFNYMQLC----GFRPNHAGIVGALTACAF-LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG  269 (498)
Q Consensus       199 ----g~~~~a~~~~~~m~~~----g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  269 (498)
                          ...+++.++-......    ...+.......-+.-... .+..+.+.....+..           ..--.+|-..-
T Consensus       201 ~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~  269 (577)
T KOG1258|consen  201 EKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSE  269 (577)
T ss_pred             hhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhH
Confidence                1223333332222210    000011111111110000 011111111111100           00111122222


Q ss_pred             CHHHHHHHHhhCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHH
Q 010881          270 CIETACSVFDSMPN-----------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC  338 (498)
Q Consensus       270 ~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~  338 (498)
                      ........|+.-.+           .+..+|..-+.--...|+.+.+.-+|++..-.             ...=...|-.
T Consensus       270 ~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-------------cA~Y~efWik  336 (577)
T KOG1258|consen  270 EEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-------------CALYDEFWIK  336 (577)
T ss_pred             hHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-------------HhhhHHHHHH
Confidence            23333333433322           13456777777777778888877777776431             0011344555


Q ss_pred             HHHHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC
Q 010881          339 LVDLLGRAGMLEAAKKVVREM-----PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE  413 (498)
Q Consensus       339 l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  413 (498)
                      .+.-....|+.+-|..++...     +-.|....+.+.+  +-..|+++.|..+++.+.+.-|....+-..-+....+.|
T Consensus       337 y~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~  414 (577)
T KOG1258|consen  337 YARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG  414 (577)
T ss_pred             HHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence            555555557777777776655     2233333333222  344578888888888887766665555555566666777


Q ss_pred             CcchHH
Q 010881          414 QWNGVE  419 (498)
Q Consensus       414 ~~~~a~  419 (498)
                      ..+.+.
T Consensus       415 ~~~~~~  420 (577)
T KOG1258|consen  415 NLEDAN  420 (577)
T ss_pred             chhhhh
Confidence            777666

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=84.20  E-value=9.9  Score=30.25  Aligned_cols=76  Identities=9%  Similarity=0.252  Sum_probs=35.7

Q ss_pred             HHHHHHHhhcCCCCChhHHHHHhhhcC---------CCCcchHHHHHHHHHhCCC-chHHHHHHHHhHHCCCCCCcchHH
Q 010881           23 VGKIIGFCSASDIGDLSHGYRLFVCLQ---------YRTTFIWNTMIRGFAEKNE-PIKAFALYKQMLRSDFLPNNYTFS   92 (498)
Q Consensus        23 ~~~l~~~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~   92 (498)
                      .|.++.-.+..  +++.....+++.+.         ..+..+|++++.+.++... --.+..+|..|.+.+.+++..-|.
T Consensus        42 iN~iL~hl~~~--~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~  119 (145)
T PF13762_consen   42 INCILNHLASY--QNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS  119 (145)
T ss_pred             HHHHHHHHHHc--cchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            44455444444  55555555555443         1233445555555543333 223444555555444455555555


Q ss_pred             HHHHHHHc
Q 010881           93 FILRACAD  100 (498)
Q Consensus        93 ~ll~~~~~  100 (498)
                      .++.++.+
T Consensus       120 ~li~~~l~  127 (145)
T PF13762_consen  120 CLIKAALR  127 (145)
T ss_pred             HHHHHHHc
Confidence            55554443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=84.11  E-value=97  Score=36.62  Aligned_cols=349  Identities=9%  Similarity=-0.033  Sum_probs=173.2

Q ss_pred             HHHHhhcCCCCChhHHHHHhhhc----CCCC--cchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHH
Q 010881           26 IIGFCSASDIGDLSHGYRLFVCL----QYRT--TFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACA   99 (498)
Q Consensus        26 l~~~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~   99 (498)
                      |..+--++  +.+..|...++.-    .+.+  ...|-.+...|+.-++++....+...-..     +... ..-|-...
T Consensus      1389 La~aSfrc--~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl-~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRC--KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSL-YQQILEHE 1460 (2382)
T ss_pred             HHHHHHhh--HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccH-HHHHHHHH
Confidence            34445556  7788888888872    2221  12333444488888888887766653111     2222 23344456


Q ss_pred             ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC---ChhhHHH-HHHHHHccCCHHHHHH
Q 010881          100 DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR---DVISWTS-LINGYAKSGQISIARQ  175 (498)
Q Consensus       100 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~A~~  175 (498)
                      ..|++..|...|+.+.+.++ +...+++.++......|.++.+....+.....   ....++. =+.+-.+.++++....
T Consensus      1461 ~~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred             hhccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence            67888888888888887653 23556666666666677777777766655432   2222322 2334466777777666


Q ss_pred             HHhhCCCCChhHHHHH--HHHHHhCC--CHhHHHHHHHHHHHcCCCC---------CHHHHHHHHHHHhccCChHHHHHH
Q 010881          176 MFDKMPEKNAVSWSAM--INGYVQVD--LFKEALEHFNYMQLCGFRP---------NHAGIVGALTACAFLGALDQGRWI  242 (498)
Q Consensus       176 ~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~a~~~~~~m~~~g~~p---------~~~~~~~ll~~~~~~~~~~~a~~~  242 (498)
                      ...   ..+..+|...  +....+..  +.-.-.+..+-+++.-+.|         -...|..++....-..    -...
T Consensus      1540 ~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e----l~~~ 1612 (2382)
T KOG0890|consen 1540 YLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE----LENS 1612 (2382)
T ss_pred             hhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH----HHHH
Confidence            655   3344444433  22222222  2111112333332221111         0011222222111000    0000


Q ss_pred             HHHHHHhCCCCChhH------H---HHHHHHHHhcCCHHHHHH-H-Hhh-CC----CCChhHHHHHHHHHHhcCChHHHH
Q 010881          243 HAYVDRNGIELDIIL------G---TAIIDMYAKCGCIETACS-V-FDS-MP----NRDVFAYTSLISGLANHDQSASAI  306 (498)
Q Consensus       243 ~~~~~~~~~~~~~~~------~---~~l~~~~~~~g~~~~A~~-~-~~~-~~----~~~~~~~~~li~~~~~~~~~~~a~  306 (498)
                      .+..  .++.++..+      |   ....+.+.+..+.--|.+ . +.. |.    +.-..+|-...+.....|+++.|.
T Consensus      1613 ~~~l--~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~ 1690 (2382)
T KOG0890|consen 1613 IEEL--KKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQ 1690 (2382)
T ss_pred             HHHh--hccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHH
Confidence            0000  111221111      1   111122222111111111 1 111 11    123457777777777889999998


Q ss_pred             HHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----------CCCCCHHHHHHHHHH--
Q 010881          307 ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----------PIEPDNYVLGALLNA--  374 (498)
Q Consensus       307 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~p~~~~~~~l~~~--  374 (498)
                      ..+-...+.+ .              +..+.-.+..+...|+-..|+.++++.          +.++.+..-+..+..  
T Consensus      1691 nall~A~e~r-~--------------~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~ 1755 (2382)
T KOG0890|consen 1691 NALLNAKESR-L--------------PEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKA 1755 (2382)
T ss_pred             HHHHhhhhcc-c--------------chHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhH
Confidence            8776666643 1              356666778888899999999888875          111222222222221  


Q ss_pred             -------HHhcC--CHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881          375 -------CRVHG--DVDLGKETVESLVERSLDHEGVHVLLSN  407 (498)
Q Consensus       375 -------~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~  407 (498)
                             ....+  ..+..++.|..+.+..|.....++.++.
T Consensus      1756 ~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~ 1797 (2382)
T KOG0890|consen 1756 KLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGK 1797 (2382)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHH
Confidence                   12223  3456677888888888865555555553

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.10  E-value=4.3  Score=36.12  Aligned_cols=61  Identities=13%  Similarity=-0.024  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      +++...+.|..+|.+.+|.++.++++..+|-+...+..|...|...|+--+|.+-++++.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            4455567899999999999999999999999999999999999999998888888877753

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=83.96  E-value=5.5  Score=38.29  Aligned_cols=85  Identities=7%  Similarity=0.052  Sum_probs=0.0

Q ss_pred             HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC-cchHHHHHHhh
Q 010881          349 LEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ-WNGVEKVRRGM  425 (498)
Q Consensus       349 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~m  425 (498)
                      ......+|+..  .+.-|...|...+.-|.+.+.+.+...+|.+|+...|+++..|...+.-...-+. ++.|..+|   
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalf---  163 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALF---  163 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHH---


Q ss_pred             hhCCccccCcee
Q 010881          426 EDNEVRKVPGCS  437 (498)
Q Consensus       426 ~~~~~~~~~~~~  437 (498)
                       -+|++..|.+.
T Consensus       164 -lrgLR~npdsp  174 (568)
T KOG2396|consen  164 -LRGLRFNPDSP  174 (568)
T ss_pred             -HHHhhcCCCCh

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=83.74  E-value=8.7  Score=28.22  Aligned_cols=56  Identities=16%  Similarity=0.346  Sum_probs=39.1

Q ss_pred             HHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          351 AAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       351 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      +..+-++.+   .+.|++....+.+.+|.+.+++..|.++++-+...-.+....|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            444555554   77899999999999999999999999999998876544443565553

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.49  E-value=2.9  Score=24.54  Aligned_cols=28  Identities=18%  Similarity=0.167  Sum_probs=21.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQL  314 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~  314 (498)
                      .+++.|...|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4677888888888888888888888765

>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat

Probab=83.41  E-value=7.9  Score=27.49  Aligned_cols=66  Identities=12%  Similarity=0.099  Sum_probs=43.2

Q ss_pred             HhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHH
Q 010881            4 IKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAF   73 (498)
Q Consensus         4 ~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~   73 (498)
                      +.++++.....|+- +....+.+-.+-.+.  |+.+.|++++..++ +.+..|...++++...|.-.-|.
T Consensus        21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~--g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~   86 (88)
T cd08819          21 TRDVCDKCLEQGLL-TEEDRNRIEAATENH--GNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR   86 (88)
T ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHhcccc--CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence            45677777777754 333444433333355  77888888888888 77778888888877777655443

Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=83.28  E-value=1.9  Score=41.10  Aligned_cols=87  Identities=7%  Similarity=-0.068  Sum_probs=73.1

Q ss_pred             HHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881          340 VDLLGRAGMLEAAKKVVREM-PIEPDNYVLGAL-LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG  417 (498)
Q Consensus       340 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  417 (498)
                      +.-+...++++.|..++.++ .+.||...|... ..++.+.+++..|+.=+.++++.+|.....|..-+.++.+.+++.+
T Consensus        11 an~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~   90 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKK   90 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHH
Confidence            45566778899999999888 778865555443 3788999999999999999999999999899999999999999999


Q ss_pred             HHHHHHhhh
Q 010881          418 VEKVRRGME  426 (498)
Q Consensus       418 a~~~~~~m~  426 (498)
                      |...|+.-.
T Consensus        91 A~~~l~~~~   99 (476)
T KOG0376|consen   91 ALLDLEKVK   99 (476)
T ss_pred             HHHHHHHhh
Confidence            999986654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=83.26  E-value=15  Score=26.71  Aligned_cols=58  Identities=19%  Similarity=0.302  Sum_probs=43.9

Q ss_pred             CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          348 MLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       348 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                      |.=++.+-++.+   .+.|++....+.+++|.+.+++..|.++++-+...-..+...|..+
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~   82 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYI   82 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHH
Confidence            444556666665   7889999999999999999999999999998875443333345544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=83.22  E-value=59  Score=33.47  Aligned_cols=58  Identities=17%  Similarity=0.221  Sum_probs=35.5

Q ss_pred             hHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCc-------hHHHHHHHHhHH
Q 010881           21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEP-------IKAFALYKQMLR   81 (498)
Q Consensus        21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-------~~A~~~~~~m~~   81 (498)
                      .+| ++|=.|.++  |++++|.++.....   ++....+-..+..|....+-       ++...-|++...
T Consensus       113 p~W-a~Iyy~LR~--G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r  180 (613)
T PF04097_consen  113 PIW-ALIYYCLRC--GDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIR  180 (613)
T ss_dssp             EHH-HHHHHHHTT--T-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTT
T ss_pred             ccH-HHHHHHHhc--CCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhc
Confidence            344 345667888  99999999993332   34456677778887765322       344455555544

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=82.65  E-value=37  Score=30.76  Aligned_cols=99  Identities=7%  Similarity=-0.075  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHhccCChH---HHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHH
Q 010881          221 AGIVGALTACAFLGALD---QGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLIS  294 (498)
Q Consensus       221 ~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~  294 (498)
                      .++..++.++...+..+   .|..+++.+.... +-.+.++-.-++.+.+.++.+.+.+++.+|...   ....+...+.
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~  163 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILH  163 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHH
Confidence            34556666666666544   4455555554332 223445545566666678888888888887752   2344555554


Q ss_pred             HHHh--cCChHHHHHHHHHHHHcCCCCC
Q 010881          295 GLAN--HDQSASAIELFMRMQLEGVVPN  320 (498)
Q Consensus       295 ~~~~--~~~~~~a~~~~~~m~~~~~~p~  320 (498)
                      .+..  ......|...+..+....+.|.
T Consensus       164 ~i~~l~~~~~~~a~~~ld~~l~~r~~~~  191 (278)
T PF08631_consen  164 HIKQLAEKSPELAAFCLDYLLLNRFKSS  191 (278)
T ss_pred             HHHHHHhhCcHHHHHHHHHHHHHHhCCC
Confidence            4421  2334556666666665544443

It is also involved in sporulation [].

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=82.61  E-value=1.4  Score=24.27  Aligned_cols=28  Identities=7%  Similarity=0.061  Sum_probs=24.6

Q ss_pred             HHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          401 VHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ++..++.++.+.|++++|.+.|+++.+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4677899999999999999999998764

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=82.37  E-value=12  Score=27.49  Aligned_cols=47  Identities=19%  Similarity=0.155  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 010881          203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN  249 (498)
Q Consensus       203 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  249 (498)
                      +..+-+..+....+.|+.....+.+.+|.+.+++..|.++++-++..
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444444444555566666666666666666666666665555443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.05  E-value=2.2  Score=23.78  Aligned_cols=28  Identities=11%  Similarity=0.073  Sum_probs=25.0

Q ss_pred             hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          400 GVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       400 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .++..++.+|...|++++|.+.|++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3688899999999999999999988765

...

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=81.93  E-value=66  Score=33.14  Aligned_cols=186  Identities=12%  Similarity=0.065  Sum_probs=87.6

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhH-HCCCCCC--cchHHHHHHHHH-ccCCcHHHHHHHHHHHHhCCCCchh---
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQML-RSDFLPN--NYTFSFILRACA-DTSCLFVGLICHAQVIRLGWESYDF---  124 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~-~~~~~p~--~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~---  124 (498)
                      ++..|..||..         |+..++-+. +..+.|.  ..++-.+...+. ...+++.|+..+++.....-.++..   
T Consensus        29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k   99 (608)
T PF10345_consen   29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK   99 (608)
T ss_pred             hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence            44556666543         345555554 2233332  223333444433 4556666666666554432221111   


Q ss_pred             --HHHHHHHHHHhCCChhhHHHHhhccCCC----Chhh----HHHH-HHHHHccCCHHHHHHHHhhCCC-----CC--hh
Q 010881          125 --VLNGLLHLYATCNCMDPARKLFDMSVNR----DVIS----WTSL-INGYAKSGQISIARQMFDKMPE-----KN--AV  186 (498)
Q Consensus       125 --~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~----~~~l-i~~~~~~~~~~~A~~~~~~~~~-----~~--~~  186 (498)
                        ....++..+.+.+... |...+++.++.    ....    +..+ +..+...++...|.+.++.+..     .+  ..
T Consensus       100 ~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~  178 (608)
T PF10345_consen  100 FRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVF  178 (608)
T ss_pred             HHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHH
Confidence              1223445555555444 66666553311    1111    1222 1122223677777777766542     12  22


Q ss_pred             HHHHHHHHH--HhCCCHhHHHHHHHHHHHcCC---------CCCHHHHHHHHHHHh--ccCChHHHHHHHHHHH
Q 010881          187 SWSAMINGY--VQVDLFKEALEHFNYMQLCGF---------RPNHAGIVGALTACA--FLGALDQGRWIHAYVD  247 (498)
Q Consensus       187 ~~~~li~~~--~~~g~~~~a~~~~~~m~~~g~---------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~  247 (498)
                      .+-.++.+.  .+.+..+++.+..+.+.....         .|...++..++..++  ..|+++.+...++.+.
T Consensus       179 v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  179 VLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            333333332  344556667777766633211         234556666666654  4566667766665554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=81.92  E-value=5.1  Score=33.00  Aligned_cols=34  Identities=15%  Similarity=0.138  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881          381 VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ  414 (498)
Q Consensus       381 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  414 (498)
                      +++|+.-|++++.++|+...++..++.+|...+.
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            5566677777778999988899999988877654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=81.86  E-value=29  Score=32.84  Aligned_cols=96  Identities=15%  Similarity=0.138  Sum_probs=71.2

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC----------CC-----C------------C-CHHHHHHH---HHHHHhcCC
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM----------PI-----E------------P-DNYVLGAL---LNACRVHGD  380 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~-----~------------p-~~~~~~~l---~~~~~~~g~  380 (498)
                      -+.++..+...+...|+.+.|.+++++.          .+     .            + |...|.++   +..+.+.|-
T Consensus        39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~  118 (360)
T PF04910_consen   39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC  118 (360)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence            4677778888899999999888887765          22     1            1 33344443   457889999


Q ss_pred             HHHHHHHHHHHHhcCCC-CchHHHHHHHHhH-hcCCcchHHHHHHhhhh
Q 010881          381 VDLGKETVESLVERSLD-HEGVHVLLSNIYA-STEQWNGVEKVRRGMED  427 (498)
Q Consensus       381 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~  427 (498)
                      +..|.++.+-+..++|. |+......+..|+ +.++++--+++.+....
T Consensus       119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            99999999999999998 7766556666554 66888878888776654

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.36  E-value=15  Score=31.08  Aligned_cols=73  Identities=15%  Similarity=0.023  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCChhHHHHHHHHHHhcCCHHHHH
Q 010881          202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN---GIELDIILGTAIIDMYAKCGCIETAC  275 (498)
Q Consensus       202 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~  275 (498)
                      +.|.+.|-++...+.- +....-..+..|....+.+++.+++..+.+.   +-.+|+.++.+|+..|.+.|+++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPEL-ETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            5566666666655433 3334444444444566667777666665543   22566777777877777777777664

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=81.03  E-value=19  Score=29.83  Aligned_cols=74  Identities=15%  Similarity=0.120  Sum_probs=45.6

Q ss_pred             HHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881          351 AAKKVVREM-PIEPD-NYVLGALLNACRVHG-----------DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG  417 (498)
Q Consensus       351 ~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  417 (498)
                      +|..-|++. .+.|+ ..++..+..+|...+           .+++|.+.|+++.+.+|.+. .|..-+...      +.
T Consensus        53 dAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~k  125 (186)
T PF06552_consen   53 DAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AK  125 (186)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HT
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------Hh
Confidence            333334443 66785 577777777775554           36778888888888999987 455444443      35


Q ss_pred             HHHHHHhhhhCCcc
Q 010881          418 VEKVRRGMEDNEVR  431 (498)
Q Consensus       418 a~~~~~~m~~~~~~  431 (498)
                      |-++..++.+.+..
T Consensus       126 ap~lh~e~~~~~~~  139 (186)
T PF06552_consen  126 APELHMEIHKQGLG  139 (186)
T ss_dssp             HHHHHHHHHHSSS-
T ss_pred             hHHHHHHHHHHHhh
Confidence            77787777776654

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=80.79  E-value=25  Score=31.34  Aligned_cols=128  Identities=11%  Similarity=0.081  Sum_probs=80.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHH
Q 010881          294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEPDNY  366 (498)
Q Consensus       294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~  366 (498)
                      +-..+.+++++|+..+.+++..|+..++.....     ...+...+.+.|.+.|+...-.+.....       .-.....
T Consensus        11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nE-----qE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~K   85 (421)
T COG5159          11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNE-----QEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITK   85 (421)
T ss_pred             HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhH-----HHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHH
Confidence            344567788899999999988887766422111     2455667788888888876665554433       2112444


Q ss_pred             HHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCc------hHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          367 VLGALLNACRV-HGDVDLGKETVESLVERSLDHE------GVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       367 ~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      ...+|+.-+.. ...++.-+.+....++-....-      ..-.-++..+.+.|.+.+|+.+.+...
T Consensus        86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll  152 (421)
T COG5159          86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLL  152 (421)
T ss_pred             HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            55666655432 3456666666666655221111      122357788999999999999877664

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=80.69  E-value=19  Score=30.39  Aligned_cols=68  Identities=16%  Similarity=-0.036  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC-------CCChhhHHHHHHHHHccCCHHHH
Q 010881          105 FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV-------NRDVISWTSLINGYAKSGQISIA  173 (498)
Q Consensus       105 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A  173 (498)
                      +.|++.|-.+...+.--++.....|...|. ..+.+++..++-+..       ..|+..+.+|...+.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            445555555544444444444444444444 345555555543321       34556666666666666666655

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=80.43  E-value=4.4  Score=28.13  Aligned_cols=45  Identities=9%  Similarity=0.055  Sum_probs=32.3

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHH---HHHHHhHhcCCcchHHHH
Q 010881          377 VHGDVDLGKETVESLVERSLDHEGVHV---LLSNIYASTEQWNGVEKV  421 (498)
Q Consensus       377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~  421 (498)
                      ..++.++|+..+..+++..++.+.-|.   .|+.+|+..|++.+++++
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f   65 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF   65 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566778888888888887766655544   455677778888877765

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.01  E-value=78  Score=32.74  Aligned_cols=99  Identities=12%  Similarity=0.103  Sum_probs=65.2

Q ss_pred             HHHccCCcHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHH
Q 010881           97 ACADTSCLFVGLICHAQVIRLGWES---YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIA  173 (498)
Q Consensus        97 ~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A  173 (498)
                      -+.+.+.+++|+...+...  |..|   -..+...++.-+...|++++|-...-.|...+..-|.--+..+...++....
T Consensus       365 Wll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~I  442 (846)
T KOG2066|consen  365 WLLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDI  442 (846)
T ss_pred             HHHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchh
Confidence            3445566666665544332  2233   3456677888888889999998888888888888888888777777776554


Q ss_pred             HHHHhhCCC-CChhHHHHHHHHHHh
Q 010881          174 RQMFDKMPE-KNAVSWSAMINGYVQ  197 (498)
Q Consensus       174 ~~~~~~~~~-~~~~~~~~li~~~~~  197 (498)
                      ..++-.-.. -+...|..++..+..
T Consensus       443 a~~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  443 APYLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             hccCCCCCcccCchHHHHHHHHHHH
Confidence            444333222 255677777777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	498
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-06

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 5e-08
 Identities = 71/404 (17%), Positives = 119/404 (29%), Gaps = 129/404 (31%)

Query: 14  SGTLWDPFAVG-KII---GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEP 69
           +   W+ F +  KI+    F   +D    +    + +          +         +E 
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL----------DHHSMTL-TPDEV 303

Query: 70  IKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG---WESYDFV- 125
                 Y      D LP              T+   + +I  A+ IR G   W+++  V 
Sbjct: 304 KSLLLKYLDCRPQD-LPR--------EVL-TTNPRRLSII--AESIRDGLATWDNWKHVN 351

Query: 126 LNGLLHLYATC-NCMDPA--RKLF-DMSV-NRDV--------ISWT-------------- 158
            + L  +  +  N ++PA  RK+F  +SV             + W               
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKL 411

Query: 159 ---SLINGYAKSGQISIARQMFD-KMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC 214
              SL+    K   ISI     + K+  +N            +  L +  ++H  Y    
Sbjct: 412 HKYSLVEKQPKESTISIPSIYLELKVKLEN------------EYALHRSIVDH--YNIPK 457

Query: 215 GFRPNHAGIVGALTACAFLGALDQ------GRWIHAYVDRNGIELDIILGTAIID---MY 265
            F  +                LDQ      G   H     +  E   +     +D   + 
Sbjct: 458 TFDSDDLIPP----------YLDQYFYSHIGH--HLKNIEHP-ERMTLFRMVFLDFRFLE 504

Query: 266 AKCGCIETACSVFDSMPN--RDVFAYTSLISGLANH---DQSASAIELFMRMQLEGVVPN 320
            K     TA +   S+ N  + +  Y   I    N    ++  +AI  F+          
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFYKPYIC--DNDPKYERLVNAILDFLP--------- 553

Query: 321 ESMSEIYGIEPGVQHYGCLVDLLGRAGM-------LEAAKKVVR 357
                   IE  +       DLL  A M        EA K+V R
Sbjct: 554 -------KIEENLICSKYT-DLLRIALMAEDEAIFEEAHKQVQR 589

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 53.3 bits (126), Expect = 1e-07
 Identities = 15/152 (9%), Positives = 40/152 (26%), Gaps = 20/152 (13%)

Query: 217 RPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACS 276
            P    +   L       +LD  +       +  +        A          +  A  
Sbjct: 89  SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148

Query: 277 VFDSMPNR-------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI 329
           +      +        +  Y +++ G A        + +   ++  G+ P+         
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPD--------- 199

Query: 330 EPGVQHYGCLVDLLGRAGM-LEAAKKVVREMP 360
              +  Y   +  +GR        ++ + +M 
Sbjct: 200 ---LLSYAAALQCMGRQDQDAGTIERCLEQMS 228

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 49.0 bits (115), Expect = 3e-06
 Identities = 19/198 (9%), Positives = 56/198 (28%), Gaps = 8/198 (4%)

Query: 141 PARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK-------NAVSWSAMIN 193
           P+ +     ++       +       + Q+ +A  +      +           ++A++ 
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173

Query: 194 GYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW-IHAYVDRNGIE 252
           G+ +   FKE +     ++  G  P+      AL                   + + G++
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLK 233

Query: 253 LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRM 312
           L  +    ++    +   ++    V  +             S L     +      + ++
Sbjct: 234 LQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKL 293

Query: 313 QLEGVVPNESMSEIYGIE 330
            L          +   +E
Sbjct: 294 HLPLKTLQCLFEKQLHME 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	498
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.93
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.92
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.85
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.82
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.78
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.76
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.75
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.73
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.71
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.69
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.69
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.67
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.66
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.63
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.62
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.62
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.61
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.61
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.6
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.6
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.56
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.55
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.54
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.49
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.48
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.48
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.45
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.44
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.43
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.43
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.41
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.4
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.39
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.33
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.32
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.32
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.31
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.31
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.3
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.29
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.25
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.23
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.2
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.18
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.16
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.12
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.12
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.11
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.09
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.09
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.06
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.0
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.0
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.99
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.99
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.98
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.97
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.96
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.94
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.94
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.94
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.9
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.88
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.87
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.86
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.86
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.86
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.85
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.83
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.83
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.82
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.82
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.81
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.8
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.78
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.76
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.75
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.74
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.72
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.71
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.7
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.68
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.68
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.66
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.65
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.64
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.63
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.62
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.6
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.6
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.6
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.59
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.58
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.58
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.57
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.54
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.51
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.51
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.51
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.5
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.47
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.46
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.43
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.43
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.41
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.41
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.41
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.4
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.38
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.36
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.34
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.33
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.31
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.31
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.3
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.27
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.27
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.27
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.26
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.26
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.25
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.25
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.23
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.2
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.2
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.15
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.14
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.07
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.05
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.02
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.01
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.98
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.95
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.81
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.79
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.74
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.73
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.72
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.69
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.68
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.53
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.51
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.5
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.48
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.47
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.41
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.41
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.28
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.16
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.13
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.97
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.93
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.9
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.81
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.78
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.71
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.46
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.32
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.17
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.09
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.97
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.44
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.38
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.26
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.14
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.88
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.41
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.4
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	93.98
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	93.86
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.2
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.2
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.49
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.38
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.16
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.11
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.68
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	89.78
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	89.57
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.43
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.98
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	88.59
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	88.49
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	88.02
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.95
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	87.48
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.44
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	87.44
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	87.29
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	86.98
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	85.76
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	85.53
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	85.49
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	85.48
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.56
2p58_C	116	Putative type III secretion protein YSCG; type III	84.04
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	81.75
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	81.61
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	80.89
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	80.88

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-37  Score=314.16  Aligned_cols=408  Identities=9%  Similarity=-0.075  Sum_probs=353.3

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhc--CCCCcchHHHHHHHHHhCCCchHHHHHHHHh
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCL--QYRTTFIWNTMIRGFAEKNEPIKAFALYKQM   79 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m   79 (498)
                      ++|.+++..+.+.  .|+..++..++.+|.+.  |++++|..+|+.+  ..+++.+++.++.+|.+.|++++|+.+|+++
T Consensus       101 ~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  176 (597)
T 2xpi_A          101 KCAAFVGEKVLDI--TGNPNDAFWLAQVYCCT--GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGET  176 (597)
T ss_dssp             HHHHHHHHHHHHH--HCCHHHHHHHHHHHHHT--TCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSS
T ss_pred             hHHHHHHHHHHhh--CCCchHHHHHHHHHHHc--CcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence            4577788888754  57888889999999999  9999999999988  4678899999999999999999999999853


Q ss_pred             HHC---------------CCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHH-----------------
Q 010881           80 LRS---------------DFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLN-----------------  127 (498)
Q Consensus        80 ~~~---------------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------------  127 (498)
                      ...               +..++..+|+.++.+|.+.|++++|..+|+++.+.++. +...+.                 
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~  255 (597)
T 2xpi_A          177 NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLV  255 (597)
T ss_dssp             CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHH
T ss_pred             CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHH
Confidence            221               22335778999999999999999999999999987643 223222                 


Q ss_pred             ---------------------HHHHHHHhCCChhhHHHHhhccCC--CChhhHHHHHHHHHccCCHHHHHHHHhhCCC--
Q 010881          128 ---------------------GLLHLYATCNCMDPARKLFDMSVN--RDVISWTSLINGYAKSGQISIARQMFDKMPE--  182 (498)
Q Consensus       128 ---------------------~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--  182 (498)
                                           .++..|.+.|++++|.++|+++..  ++..+|+.++.+|.+.|++++|.++|+++.+  
T Consensus       256 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  335 (597)
T 2xpi_A          256 LKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID  335 (597)
T ss_dssp             HHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC
Confidence                                 225556678899999999999886  7889999999999999999999999998852  


Q ss_pred             -CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 010881          183 -KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI  261 (498)
Q Consensus       183 -~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  261 (498)
                       .+..+++.++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|..+|+.+.+.. +.+..+++.+
T Consensus       336 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l  413 (597)
T 2xpi_A          336 PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGF  413 (597)
T ss_dssp             TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence             367889999999999999999999999998653 5567889999999999999999999999998875 5678899999


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHH
Q 010881          262 IDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGC  338 (498)
Q Consensus       262 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~  338 (498)
                      +.+|.+.|++++|.++|+++.+   .+..+|+.++.+|.+.|++++|..+|+++.+.  .|+           +..+|+.
T Consensus       414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-----------~~~~~~~  480 (597)
T 2xpi_A          414 AHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQY-----------DPLLLNE  480 (597)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCC-----------CHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------ChHHHHH
Confidence            9999999999999999998753   47789999999999999999999999999875  232           6889999


Q ss_pred             HHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          339 LVDLLGRAGMLEAAKKVVREM-------PIEPD--NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       339 l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      ++.+|.+.|++++|.++|+++       +..|+  ..+|..++.+|.+.|++++|.+.++++++.+|+++.++..++.+|
T Consensus       481 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~  560 (597)
T 2xpi_A          481 LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVY  560 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            999999999999999999988       44777  789999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      .+.|++++|.++++++.+..
T Consensus       561 ~~~g~~~~A~~~~~~~l~~~  580 (597)
T 2xpi_A          561 LHKKIPGLAITHLHESLAIS  580 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhCCHHHHHHHHHHHHhcC
Confidence            99999999999999998643

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-35  Score=300.40  Aligned_cols=393  Identities=9%  Similarity=-0.062  Sum_probs=343.2

Q ss_pred             CChhHHHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHH
Q 010881           18 WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFIL   95 (498)
Q Consensus        18 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll   95 (498)
                      +++..++.++..|.+.  |++++|..+|+++.  .|+..++..++.+|.+.|++++|..+|+++..  .+++..+++.++
T Consensus        82 ~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~  157 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQ--QQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAA  157 (597)
T ss_dssp             CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc--cCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHH
Confidence            5778899999999999  99999999999886  57778999999999999999999999999865  467889999999


Q ss_pred             HHHHccCCcHHHHHHHHHHHHh---------------CCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC---ChhhH
Q 010881           96 RACADTSCLFVGLICHAQVIRL---------------GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR---DVISW  157 (498)
Q Consensus        96 ~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~  157 (498)
                      .+|.+.|++++|..+|+++...               +.+++..+++.++.+|.+.|++++|.++|+++...   +...+
T Consensus       158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  237 (597)
T 2xpi_A          158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF  237 (597)
T ss_dssp             HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            9999999999999999853211               22335789999999999999999999999987632   23333


Q ss_pred             HHH--------------------------------------HHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHh
Q 010881          158 TSL--------------------------------------INGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQ  197 (498)
Q Consensus       158 ~~l--------------------------------------i~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~  197 (498)
                      ..+                                      +..|.+.|++++|.++|+++.+  ++..+|+.++.+|.+
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV  317 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence            322                                      4456678999999999999987  789999999999999


Q ss_pred             CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010881          198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV  277 (498)
Q Consensus       198 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  277 (498)
                      .|++++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..+++.++.+|.+.|++++|.++
T Consensus       318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  395 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY  395 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999999875 3477789999999999999999999999998765 67889999999999999999999999


Q ss_pred             HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 010881          278 FDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK  354 (498)
Q Consensus       278 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  354 (498)
                      |+++.+   .+..+|+.++.+|.+.|++++|+.+|+++.+.  .|+           +..+|..++.+|.+.|++++|.+
T Consensus       396 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l~~~~~~~g~~~~A~~  462 (597)
T 2xpi_A          396 FSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL--FQG-----------THLPYLFLGMQHMQLGNILLANE  462 (597)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TTT-----------CSHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc-----------chHHHHHHHHHHHHcCCHHHHHH
Confidence            998753   46789999999999999999999999999875  232           68899999999999999999999


Q ss_pred             HHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-chHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881          355 VVREM-PIE-PDNYVLGALLNACRVHGDVDLGKETVESLVER------SLDH-EGVHVLLSNIYASTEQWNGVEKVRRGM  425 (498)
Q Consensus       355 ~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m  425 (498)
                      +|+++ ... .+..+|..++..|.+.|++++|.++|+++++.      .|+. ..++..++.+|.+.|++++|.++++++
T Consensus       463 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          463 YLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            99998 333 47899999999999999999999999999987      4443 567899999999999999999999999


Q ss_pred             hhCC
Q 010881          426 EDNE  429 (498)
Q Consensus       426 ~~~~  429 (498)
                      .+.+
T Consensus       543 ~~~~  546 (597)
T 2xpi_A          543 LLLS  546 (597)
T ss_dssp             HHHS
T ss_pred             HHhC
Confidence            8765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.1e-27  Score=229.21  Aligned_cols=369  Identities=13%  Similarity=0.048  Sum_probs=308.7

Q ss_pred             HHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCC
Q 010881           27 IGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSC  103 (498)
Q Consensus        27 ~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~  103 (498)
                      ...+.+.  |++++|.+.++.+.   ..+...+..+...+...|++++|...++...+.. +.+..+|..+...+...|+
T Consensus         6 a~~~~~~--g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            6 AHREYQA--GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            3445556  99999999998764   3355677778888889999999999999888742 3467789999999999999


Q ss_pred             cHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC--CC-ChhhHHHHHHHHHccCCHHHHHHHHhhC
Q 010881          104 LFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV--NR-DVISWTSLINGYAKSGQISIARQMFDKM  180 (498)
Q Consensus       104 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~  180 (498)
                      +++|...++++++..+ .+...+..+..++.+.|++++|.+.|+++.  .| +...+..+...+...|++++|.+.|+++
T Consensus        83 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999998763 356678889999999999999999998765  33 4566778888899999999999999887


Q ss_pred             CC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhH
Q 010881          181 PE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIIL  257 (498)
Q Consensus       181 ~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  257 (498)
                      .+  | +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+..+.+.. +.+..+
T Consensus       162 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~  239 (388)
T 1w3b_A          162 IETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV  239 (388)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence            53  3 56788999999999999999999999998863 3345678888888899999999999999888875 556788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChH
Q 010881          258 GTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQ  334 (498)
Q Consensus       258 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~  334 (498)
                      +..+..+|.+.|++++|...|+++.+   .+..+|..+...+.+.|++++|...|+++.+.  .|+           +..
T Consensus       240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~  306 (388)
T 1w3b_A          240 HGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPT-----------HAD  306 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTT-----------CHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccc-----------cHH
Confidence            88999999999999999999988764   35678999999999999999999999999875  233           678


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881          335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      ++..+...+...|++++|...++++ ...| +..++..+...+...|++++|...++++++..|+.+.++..++.++...
T Consensus       307 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~  386 (388)
T 1w3b_A          307 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHc
Confidence            8999999999999999999999988 5555 5788899999999999999999999999999999998999998888776


Q ss_pred             CC
Q 010881          413 EQ  414 (498)
Q Consensus       413 g~  414 (498)
                      |+
T Consensus       387 ~~  388 (388)
T 1w3b_A          387 QD  388 (388)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=5.7e-27  Score=224.34  Aligned_cols=351  Identities=11%  Similarity=0.009  Sum_probs=308.3

Q ss_pred             HHHHHhCCCchHHHHHHHHhHHCCCCCCc-chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881           60 IRGFAEKNEPIKAFALYKQMLRSDFLPNN-YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC  138 (498)
Q Consensus        60 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  138 (498)
                      ...+.+.|++++|+..++++.+.  .|+. ..+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|+
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            45567889999999999999874  4554 456666677889999999999999999876 4477899999999999999


Q ss_pred             hhhHHHHhhccC--CC-ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881          139 MDPARKLFDMSV--NR-DVISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQ  212 (498)
Q Consensus       139 ~~~a~~~~~~~~--~~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  212 (498)
                      +++|.+.|+++.  .| +..+|..+..++.+.|++++|.+.|+++.+  | +...+..+...+...|++++|...|+++.
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  162 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            999999999875  33 566899999999999999999999998763  4 45667888899999999999999999998


Q ss_pred             HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHH
Q 010881          213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAY  289 (498)
Q Consensus       213 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~  289 (498)
                      +.. +-+..++..+...+...|++++|...++.+.+.+ +.+...+..+...+...|++++|...|++...   .+..++
T Consensus       163 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  240 (388)
T 1w3b_A          163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH  240 (388)
T ss_dssp             HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHH
Confidence            863 3356788899999999999999999999999886 66778899999999999999999999987753   367889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHH
Q 010881          290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI-EPDNYV  367 (498)
Q Consensus       290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~  367 (498)
                      ..+...+...|++++|...|+++.+.  .|+           +..+|..+..++.+.|++++|...|+++ .. +.+..+
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~  307 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPH-----------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS  307 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT--CSS-----------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHH
Confidence            99999999999999999999999885  344           5788999999999999999999999998 33 347889


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +..+...+...|++++|...++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus       308 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999763

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=8.3e-29  Score=241.51  Aligned_cols=206  Identities=12%  Similarity=0.093  Sum_probs=131.6

Q ss_pred             HHHHHHHHhHHCCCCCCcc-hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhcc
Q 010881           71 KAFALYKQMLRSDFLPNNY-TFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS  149 (498)
Q Consensus        71 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  149 (498)
                      .+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+...++       
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-------   80 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-------   80 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-------
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-------
Confidence            4455666777666655443 57888888888999999999999998888888888888888888877654322       


Q ss_pred             CCCChhhHHHHHHHHHccCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHH
Q 010881          150 VNRDVISWTSLINGYAKSGQISIARQMFDKMP----EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVG  225 (498)
Q Consensus       150 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  225 (498)
                                     .+.++++.|.++|++|.    .||..+|++||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus        81 ---------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~  145 (501)
T 4g26_A           81 ---------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGP  145 (501)
T ss_dssp             ---------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             ---------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehH
Confidence                           11233455555555553    35666677777777777777777777777766666777777777


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHh
Q 010881          226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP----NRDVFAYTSLISGLAN  298 (498)
Q Consensus       226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~  298 (498)
                      +|.+|++.|++++|.++|++|.+.|+.||..+|++|+++|++.|++++|.++|++|.    .|+..||+.++..|+.
T Consensus       146 lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          146 ALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            777777777777777777777666666766666666666666666666666666664    2566666666666654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=7.9e-28  Score=234.61  Aligned_cols=181  Identities=13%  Similarity=0.081  Sum_probs=165.8

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHhCCCCChh
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA---------LDQGRWIHAYVDRNGIELDII  256 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~  256 (498)
                      ..++.+|++|++.|++++|+++|++|.+.|+.||..||+++|.+|+..+.         ++.|.++|++|.+.|+.||..
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            45788899999999999999999999999999999999999999987654         688999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCC----CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSMP----NRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG  332 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~  332 (498)
                      +|+++|.+|++.|++++|.++|++|.    .||..+|++||.+|++.|+.++|.++|++|.+.|+.|            |
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P------------d  174 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP------------E  174 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC------------C
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC------------C
Confidence            99999999999999999999999986    3799999999999999999999999999999986555            5


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM---PIEPDNYVLGALLNACRVH  378 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~  378 (498)
                      ..||+.||.+|++.|++++|.++|++|   +..|+..||+.++..+...
T Consensus       175 ~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          175 EPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            899999999999999999999999999   8899999999999888654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.2e-24  Score=216.00  Aligned_cols=390  Identities=9%  Similarity=-0.049  Sum_probs=313.5

Q ss_pred             hhHHHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHH
Q 010881           20 PFAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRA   97 (498)
Q Consensus        20 ~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~   97 (498)
                      ...+-.+...+.+.  |++++|...|+++.  .|+..+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..+
T Consensus         6 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRN--KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            34566677888888  99999999999876  5788899999999999999999999999998843 2245678889999


Q ss_pred             HHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHh-------------------------------
Q 010881           98 CADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF-------------------------------  146 (498)
Q Consensus        98 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~-------------------------------  146 (498)
                      +...|++++|...++.+.+.++. +......++..+........+.+.+                               
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGDF-NDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSSC-CGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            99999999999999999988753 3333333333333221111111111                               


Q ss_pred             -------hccC---------CC-ChhhHHHHHHHHHc---cCCHHHHHHHHhhCCC----------------C-ChhHHH
Q 010881          147 -------DMSV---------NR-DVISWTSLINGYAK---SGQISIARQMFDKMPE----------------K-NAVSWS  189 (498)
Q Consensus       147 -------~~~~---------~~-~~~~~~~li~~~~~---~~~~~~A~~~~~~~~~----------------~-~~~~~~  189 (498)
                             ....         .| +...+......+..   .|++++|...|+++.+                | +..++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence                   1100         01 13444444444554   8999999999988754                2 356788


Q ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 010881          190 AMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG  269 (498)
Q Consensus       190 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  269 (498)
                      .+...+...|++++|...|+++.+..  |+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence            88999999999999999999999865  447788889999999999999999999998775 667888999999999999


Q ss_pred             CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc
Q 010881          270 CIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA  346 (498)
Q Consensus       270 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~  346 (498)
                      ++++|...|+++.+   .+..++..+...+...|++++|...++++.+.  .|+           +..++..+...+...
T Consensus       319 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~la~~~~~~  385 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPE-----------APEVPNFFAEILTDK  385 (514)
T ss_dssp             CTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STT-----------CSHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--ccc-----------CHHHHHHHHHHHHHC
Confidence            99999999998753   46778999999999999999999999999875  333           568899999999999


Q ss_pred             CCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881          347 GMLEAAKKVVREM----PIEPD----NYVLGALLNACRV---HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW  415 (498)
Q Consensus       347 g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  415 (498)
                      |++++|...++++    +-.++    ...+..+...+..   .|++++|...++++++..|+++.++..++.++.+.|++
T Consensus       386 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~  465 (514)
T 2gw1_A          386 NDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDI  465 (514)
T ss_dssp             TCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             CCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCH
Confidence            9999999999987    22222    4488899999999   99999999999999999999999999999999999999


Q ss_pred             chHHHHHHhhhhCC
Q 010881          416 NGVEKVRRGMEDNE  429 (498)
Q Consensus       416 ~~a~~~~~~m~~~~  429 (498)
                      ++|...+++..+..
T Consensus       466 ~~A~~~~~~a~~~~  479 (514)
T 2gw1_A          466 DEAITLFEESADLA  479 (514)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999987654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.93  E-value=6.6e-23  Score=200.10  Aligned_cols=339  Identities=12%  Similarity=0.022  Sum_probs=248.5

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH  131 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  131 (498)
                      ++..|..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++++++.++. +..++..+..
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~  102 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHH
Confidence            56678888899999999999999999998742 236777888888999999999999999999988743 5677888888


Q ss_pred             HHHhCCChhhHHHHhhccCCCC---h---hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHH
Q 010881          132 LYATCNCMDPARKLFDMSVNRD---V---ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL  205 (498)
Q Consensus       132 ~~~~~g~~~~a~~~~~~~~~~~---~---~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  205 (498)
                      +|.+.|++++|.+.|+++...+   .   ..+..++..+..                   ..+..+...+...|++++|.
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~~~~A~  163 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGDYTAAI  163 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCCHHHHH
Confidence            8999999999998888875432   2   455555443211                   11223344455566666666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010881          206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--  283 (498)
Q Consensus       206 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  283 (498)
                      ..|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++..  
T Consensus       164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            6666666542 2345556666666666666666666666666553 44566666677777777777777777666542  


Q ss_pred             C-ChhHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC--hHHHHHHHHHHhhcCC
Q 010881          284 R-DVFAYTSL------------ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG--VQHYGCLVDLLGRAGM  348 (498)
Q Consensus       284 ~-~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~  348 (498)
                      | +...+..+            ...+...|++++|...|+++.+.  .|+         .|.  ..++..++.++.+.|+
T Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~---------~~~~~~~~~~~l~~~~~~~g~  310 (450)
T 2y4t_A          242 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPS---------IAEYTVRSKERICHCFSKDEK  310 (450)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCS---------SHHHHHHHHHHHHHHHHTTTC
T ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc---------chHHHHHHHHHHHHHHHHCCC
Confidence            2 23333333            78899999999999999999884  333         111  4578999999999999


Q ss_pred             HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH------------HhHhcC-
Q 010881          349 LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN------------IYASTE-  413 (498)
Q Consensus       349 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~g-  413 (498)
                      +++|...++++ ...| +...|..+..+|...|++++|...++++++..|+++..+..++.            .|...| 
T Consensus       311 ~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~  390 (450)
T 2y4t_A          311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV  390 (450)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence            99999999998 4445 78999999999999999999999999999999999988888884            355555 


Q ss_pred             ----CcchHHHHHHh
Q 010881          414 ----QWNGVEKVRRG  424 (498)
Q Consensus       414 ----~~~~a~~~~~~  424 (498)
                          +.+++.+.+++
T Consensus       391 ~~~~~~~~~~~~y~~  405 (450)
T 2y4t_A          391 KRNAKKQEIIKAYRK  405 (450)
T ss_dssp             STTCCTTHHHHHHHH
T ss_pred             CccCCHHHHHHHHHH
Confidence                44556666665

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.4e-23  Score=206.74  Aligned_cols=390  Identities=10%  Similarity=-0.079  Sum_probs=305.1

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQ   78 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~   78 (498)
                      ++|.+.+..+++..  |++.++..+..+|.+.  |++++|...|+.+.   ..+..+|..+..++.+.|++++|+..|++
T Consensus        23 ~~A~~~~~~al~~~--p~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   98 (514)
T 2gw1_A           23 DDAIKYYNWALELK--EDPVFYSNLSACYVSV--GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSV   98 (514)
T ss_dssp             HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            46788899999887  7899999999999999  99999999999865   34667899999999999999999999999


Q ss_pred             hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh-----------------------------------CC----
Q 010881           79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL-----------------------------------GW----  119 (498)
Q Consensus        79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----------------------------------~~----  119 (498)
                      +.+.+. ++......++..+........+.+.+..+...                                   ..    
T Consensus        99 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (514)
T 2gw1_A           99 LSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTF  177 (514)
T ss_dssp             HHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCC
T ss_pred             HHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHH
Confidence            998652 34444444444443322222222222111000                                   00    


Q ss_pred             -----CCchhHHHHHHHHHHh---CCChhhHHHHhhccCC----------------C-ChhhHHHHHHHHHccCCHHHHH
Q 010881          120 -----ESYDFVLNGLLHLYAT---CNCMDPARKLFDMSVN----------------R-DVISWTSLINGYAKSGQISIAR  174 (498)
Q Consensus       120 -----~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~----------------~-~~~~~~~li~~~~~~~~~~~A~  174 (498)
                           +.+...+..+...+..   .|++++|..+|+++..                | +..++..+...+...|++++|.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  257 (514)
T 2gw1_A          178 ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAH  257 (514)
T ss_dssp             SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHH
Confidence                 1113334444444444   8999999999987644                1 3457888889999999999999


Q ss_pred             HHHhhCC--CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 010881          175 QMFDKMP--EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE  252 (498)
Q Consensus       175 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  252 (498)
                      ..|+++.  .|+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.+.. +
T Consensus       258 ~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~  335 (514)
T 2gw1_A          258 EDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-P  335 (514)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-S
T ss_pred             HHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-h
Confidence            9999875  2447788899999999999999999999998763 3466788889999999999999999999999875 5


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC
Q 010881          253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI  329 (498)
Q Consensus       253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~  329 (498)
                      .+..++..+..+|...|++++|...|+.+.+   .+..++..+...+...|++++|...++++....  |+.     ...
T Consensus       336 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~-----~~~  408 (514)
T 2gw1_A          336 ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE--NKL-----DGI  408 (514)
T ss_dssp             SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTS-----SSC
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh--hcc-----chH
Confidence            5778899999999999999999999998764   467789999999999999999999999998742  220     000


Q ss_pred             CCChHHHHHHHHHHhh---cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 010881          330 EPGVQHYGCLVDLLGR---AGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL  404 (498)
Q Consensus       330 ~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  404 (498)
                      .-...++..+..++..   .|++++|...++++ ...| +..++..+...|...|++++|...++++++..|+++..+..
T Consensus       409 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  488 (514)
T 2gw1_A          409 YVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQA  488 (514)
T ss_dssp             SSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHH
Confidence            0014489999999999   99999999999998 3344 68888999999999999999999999999999998776665


Q ss_pred             H
Q 010881          405 L  405 (498)
Q Consensus       405 l  405 (498)
                      +
T Consensus       489 ~  489 (514)
T 2gw1_A          489 I  489 (514)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=3.5e-22  Score=199.56  Aligned_cols=386  Identities=10%  Similarity=-0.004  Sum_probs=295.0

Q ss_pred             hhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHH
Q 010881           20 PFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR   96 (498)
Q Consensus        20 ~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~   96 (498)
                      ...+..+...+.+.  |++++|...|+.+.   ..++.+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..
T Consensus        25 a~~~~~~g~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~  101 (537)
T 3fp2_A           25 AVQLKNRGNHFFTA--KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHT--TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence            35567777888888  99999999998865   3467888888899999999999999999988743 225667788888


Q ss_pred             HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC--------------------------
Q 010881           97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV--------------------------  150 (498)
Q Consensus        97 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------------------  150 (498)
                      ++...|++++|...++ .....+.+...    .+..+...+....|...+++..                          
T Consensus       102 ~~~~~g~~~~A~~~~~-~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLS-VLSLNGDFDGA----SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS  176 (537)
T ss_dssp             HHHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred             HHHHcCCHHHHHHHHH-HHhcCCCCChH----HHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence            8889999999998886 33322221111    1222223333344444444432                          


Q ss_pred             -----------CCChh---hHHHHHHHHHc--------cCCHHHHHHHHhhCCCC--C--------hhHHHHHHHHHHhC
Q 010881          151 -----------NRDVI---SWTSLINGYAK--------SGQISIARQMFDKMPEK--N--------AVSWSAMINGYVQV  198 (498)
Q Consensus       151 -----------~~~~~---~~~~li~~~~~--------~~~~~~A~~~~~~~~~~--~--------~~~~~~li~~~~~~  198 (498)
                                 ..+..   ....+...+..        .|++++|..+|+++.+.  +        ..++..+...+...
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~  256 (537)
T 3fp2_A          177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK  256 (537)
T ss_dssp             HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence                       22111   22222222222        24788999999988653  2        23577777889999


Q ss_pred             CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010881          199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVF  278 (498)
Q Consensus       199 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  278 (498)
                      |++++|...|+++.+.  .|+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|
T Consensus       257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~  333 (537)
T 3fp2_A          257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF  333 (537)
T ss_dssp             TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999999999999986  4667888889999999999999999999999876 667889999999999999999999999


Q ss_pred             hhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 010881          279 DSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV  355 (498)
Q Consensus       279 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  355 (498)
                      +++.+   .+...|..+...+...|++++|...++++.+.  .|+           +...+..+..++...|++++|...
T Consensus       334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~  400 (537)
T 3fp2_A          334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPT-----------LPEVPTFFAEILTDRGDFDTAIKQ  400 (537)
T ss_dssp             HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHhCCHHHHHHH
Confidence            98764   45778999999999999999999999999885  343           578899999999999999999999


Q ss_pred             HHhC----C----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881          356 VREM----P----IEPDNYVLGALLNACRVH----------GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG  417 (498)
Q Consensus       356 ~~~~----~----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  417 (498)
                      |+++    +    .......+......+...          |++++|...++++++..|+++.++..++.+|.+.|++++
T Consensus       401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~  480 (537)
T 3fp2_A          401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE  480 (537)
T ss_dssp             HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence            9987    1    112233345556677777          999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhCC
Q 010881          418 VEKVRRGMEDNE  429 (498)
Q Consensus       418 a~~~~~~m~~~~  429 (498)
                      |.+.+++..+..
T Consensus       481 A~~~~~~al~~~  492 (537)
T 3fp2_A          481 AIELFEDSAILA  492 (537)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhC
Confidence            999999998754

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=8.3e-22  Score=192.28  Aligned_cols=362  Identities=10%  Similarity=-0.025  Sum_probs=232.0

Q ss_pred             CChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHH
Q 010881           18 WDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFI   94 (498)
Q Consensus        18 ~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l   94 (498)
                      .++..+..+...|.+.  |++++|...|+.+.   ..+..+|..+..++...|++++|+..|+++.+.+ +.+..++..+
T Consensus        24 ~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  100 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAA--GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR  100 (450)
T ss_dssp             HHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence            4567888899999999  99999999999865   4578899999999999999999999999998854 2256778889


Q ss_pred             HHHHHccCCcHHHHHHHHHHHHhCCCCch---hHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHH
Q 010881           95 LRACADTSCLFVGLICHAQVIRLGWESYD---FVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQIS  171 (498)
Q Consensus        95 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~  171 (498)
                      ..++...|++++|...++++.+..+. +.   ..+..+...+...+                   +..+...+.+.|+++
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~  160 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYT  160 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHH
Confidence            99999999999999999999986533 33   55555544422111                   112223333445555


Q ss_pred             HHHHHHhhCC---CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 010881          172 IARQMFDKMP---EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDR  248 (498)
Q Consensus       172 ~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  248 (498)
                      +|...|+++.   ..+..++..+..+|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+
T Consensus       161 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  239 (450)
T 2y4t_A          161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLK  239 (450)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555554443   1244455555555555555555555555555431 23344555555555555555555555555554


Q ss_pred             hCCCCChhHHHHH------------HHHHHhcCCHHHHHHHHhhCCC--CC-----hhHHHHHHHHHHhcCChHHHHHHH
Q 010881          249 NGIELDIILGTAI------------IDMYAKCGCIETACSVFDSMPN--RD-----VFAYTSLISGLANHDQSASAIELF  309 (498)
Q Consensus       249 ~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~~~~~~a~~~~  309 (498)
                      .. +.+...+..+            ..+|...|++++|...|+++.+  |+     ...|..+...+.+.|++++|...+
T Consensus       240 ~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  318 (450)
T 2y4t_A          240 LD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVC  318 (450)
T ss_dssp             HC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             hC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            42 2233333333            6667777777777777776643  32     235666777777777777777777


Q ss_pred             HHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH------------H
Q 010881          310 MRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNA------------C  375 (498)
Q Consensus       310 ~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~------------~  375 (498)
                      +++.+.  .|+           +..+|..+..+|...|++++|...++++ ...| +...+..+..+            |
T Consensus       319 ~~a~~~--~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y  385 (450)
T 2y4t_A          319 SEVLQM--EPD-----------NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYY  385 (450)
T ss_dssp             HHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSG
T ss_pred             HHHHHh--Ccc-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHH
Confidence            777663  232           4677777777777777777777777776 5556 34444444422            3


Q ss_pred             HhcC-----CHHHHHHHHHH-HHhcCCCCch----------HHHHHHHHhHhcCCcch
Q 010881          376 RVHG-----DVDLGKETVES-LVERSLDHEG----------VHVLLSNIYASTEQWNG  417 (498)
Q Consensus       376 ~~~g-----~~~~A~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~  417 (498)
                      ...|     +.+++.+.|++ +++..|+...          .+..+..+|...++.+.
T Consensus       386 ~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~  443 (450)
T 2y4t_A          386 KILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM  443 (450)
T ss_dssp             GGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred             HHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence            3333     56777888886 6666666321          34455555555555443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.87  E-value=2.5e-20  Score=186.09  Aligned_cols=385  Identities=9%  Similarity=-0.028  Sum_probs=291.5

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCCchHHHHHHHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNEPIKAFALYKQ   78 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~   78 (498)
                      +.|.+.+..+++.. +.++.++..+..+|.+.  |++++|.+.|+.+.   ..+..+|..+...+...|++++|+..|+.
T Consensus        42 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  118 (537)
T 3fp2_A           42 NEAIKYYQYAIELD-PNEPVFYSNISACYIST--GDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSV  118 (537)
T ss_dssp             C-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            56778888888876 44788999999999999  99999999999865   44678899999999999999999999973


Q ss_pred             hHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhC------CCCchh----------------------------
Q 010881           79 MLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLG------WESYDF----------------------------  124 (498)
Q Consensus        79 m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~----------------------------  124 (498)
                      + .  ..|+..  ...+..+...+....+...++.++...      ..|+..                            
T Consensus       119 ~-~--~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (537)
T 3fp2_A          119 L-S--LNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAY  193 (537)
T ss_dssp             H-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSH
T ss_pred             H-h--cCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHH
Confidence            3 3  223322  122333444445567777777764431      111111                            


Q ss_pred             --HHHHHHHHHHhC--------CChhhHHHHhhccCCCCh----------hhHHHHHHHHHccCCHHHHHHHHhhCC--C
Q 010881          125 --VLNGLLHLYATC--------NCMDPARKLFDMSVNRDV----------ISWTSLINGYAKSGQISIARQMFDKMP--E  182 (498)
Q Consensus       125 --~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~----------~~~~~li~~~~~~~~~~~A~~~~~~~~--~  182 (498)
                        ....+...+...        |++++|..+|+++...++          .++..+...+...|++++|...|++..  .
T Consensus       194 ~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~  273 (537)
T 3fp2_A          194 ALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH  273 (537)
T ss_dssp             HHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence              222233332222        478899999988764322          246677778889999999999999886  4


Q ss_pred             CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 010881          183 KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII  262 (498)
Q Consensus       183 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  262 (498)
                      |+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+.
T Consensus       274 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la  351 (537)
T 3fp2_A          274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLA  351 (537)
T ss_dssp             CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            567788899999999999999999999998864 3457788899999999999999999999999876 56678899999


Q ss_pred             HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881          263 DMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL  339 (498)
Q Consensus       263 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l  339 (498)
                      .+|...|++++|...|+++.+   .+...+..+...+...|++++|...|+++.+..  |+.     .........+..+
T Consensus       352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~-----~~~~~~~~~~~~~  424 (537)
T 3fp2_A          352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE--EVQ-----EKIHVGIGPLIGK  424 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHC-----SSCSSTTHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--Ccc-----hhhHHHHHHHHHH
Confidence            999999999999999998764   466789999999999999999999999988753  220     0111233445566


Q ss_pred             HHHHhhc----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881          340 VDLLGRA----------GMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV  403 (498)
Q Consensus       340 ~~~~~~~----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  403 (498)
                      ..++...          |++++|...|+++ ...| +...+..+...|...|++++|.+.|+++++..|.......
T Consensus       425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  500 (537)
T 3fp2_A          425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ  500 (537)
T ss_dssp             HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred             HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            7778888          9999999999998 3344 6888999999999999999999999999999999876544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=2.4e-19  Score=168.96  Aligned_cols=295  Identities=8%  Similarity=-0.046  Sum_probs=209.9

Q ss_pred             chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccC
Q 010881           89 YTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSG  168 (498)
Q Consensus        89 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~  168 (498)
                      ..+..+...+...|++++|...++.+++..+. +..++..+..++...|++++|...|++....                
T Consensus         4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------   66 (359)
T 3ieg_A            4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIAL----------------   66 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------
Confidence            44555666666777777777777777666532 4555555666666666666666665543210                


Q ss_pred             CHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC---C-HHHHHH------------HHHHHhc
Q 010881          169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP---N-HAGIVG------------ALTACAF  232 (498)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~-~~~~~~------------ll~~~~~  232 (498)
                                  ...+...+..+...+...|++++|...|+++.+.  .|   + ...+..            +...+..
T Consensus        67 ------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  132 (359)
T 3ieg_A           67 ------------KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFD  132 (359)
T ss_dssp             ------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        0113344555555555555555555555555543  23   1 112222            2456677


Q ss_pred             cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 010881          233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELF  309 (498)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  309 (498)
                      .|++++|...++.+.+.. +.+..++..+..+|...|++++|...++++.+   .+..++..+...+...|++++|...+
T Consensus       133 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  211 (359)
T 3ieg_A          133 GADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEV  211 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            888888888888887765 56777888888888888999999888887654   46678888888899999999999999


Q ss_pred             HHHHHcCCCCCchhhhhhCCCCChHHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHH
Q 010881          310 MRMQLEGVVPNESMSEIYGIEPGVQHYG------------CLVDLLGRAGMLEAAKKVVREM-PIEPD-N----YVLGAL  371 (498)
Q Consensus       310 ~~m~~~~~~p~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l  371 (498)
                      ++..+.  .|+           +...+.            .+...+.+.|++++|...++++ ...|+ .    ..+..+
T Consensus       212 ~~a~~~--~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l  278 (359)
T 3ieg_A          212 RECLKL--DQD-----------HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERI  278 (359)
T ss_dssp             HHHHHH--CTT-----------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             HHHHhh--Ccc-----------chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence            988874  333           233332            3477799999999999999998 33443 3    235567


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ...+...|++++|...++++++..|+++.++..++.++...|++++|.+.+++..+.
T Consensus       279 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            788999999999999999999999999999999999999999999999999998764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=1.6e-19  Score=170.20  Aligned_cols=329  Identities=11%  Similarity=0.003  Sum_probs=243.9

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLH  131 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  131 (498)
                      |+..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++.+.+..+. +...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHH
Confidence            35567888899999999999999999998843 235678888999999999999999999999998643 5678888999


Q ss_pred             HHHhCCChhhHHHHhhccCCCCh------hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHH
Q 010881          132 LYATCNCMDPARKLFDMSVNRDV------ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEAL  205 (498)
Q Consensus       132 ~~~~~g~~~~a~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  205 (498)
                      ++...|++++|...|++....++      ..+..+.....                   ...+..+...+...|++++|.
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~~~~~~a~~~~~~~~~~~A~  140 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------------------MQRLRSQALDAFDGADYTAAI  140 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------------------HHHHHHHHHHHHHccCHHHHH
Confidence            99999999999999988764333      22322211100                   112333455666777777777


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010881          206 EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--  283 (498)
Q Consensus       206 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  283 (498)
                      ..++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+.+.+  
T Consensus       141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~  218 (359)
T 3ieg_A          141 TFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  218 (359)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            7777776643 3345566666666777777777777777776654 55666777777777777777777777776543  


Q ss_pred             C-ChhHHH------------HHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881          284 R-DVFAYT------------SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE  350 (498)
Q Consensus       284 ~-~~~~~~------------~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  350 (498)
                      | +...+.            .+...+...|++++|...++++.+..  |+.       .......+..+..++...|+++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~-------~~~~~~~~~~la~~~~~~~~~~  289 (359)
T 3ieg_A          219 QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSV-------AEYTVRSKERICHCFSKDEKPV  289 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSS-------HHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCc-------hHHHHHHHHHHHHHHHHccCHH
Confidence            2 222222            33667889999999999999998852  331       0001234667889999999999


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881          351 AAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       351 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      +|...+++. ...| +..++..+...+...|++++|.+.++++++..|+++.....+..+....
T Consensus       290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            999999998 4445 7889999999999999999999999999999999998888887665543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.85  E-value=7.1e-19  Score=163.76  Aligned_cols=298  Identities=11%  Similarity=-0.054  Sum_probs=209.8

Q ss_pred             CCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHH
Q 010881           84 FLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLING  163 (498)
Q Consensus        84 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~  163 (498)
                      .+.+...+..+...+...|++++|..+++++.+..+. +...+..++.++...|++++|..+++++...           
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----------   85 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDL-----------   85 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHh-----------
Confidence            3345555666666666666777777666666665432 3334444445555555555555544432210           


Q ss_pred             HHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010881          164 YAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVD-LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI  242 (498)
Q Consensus       164 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  242 (498)
                                       ...+...|..+...+...| ++++|...|+++.+.. +.+...+..+...+...|++++|...
T Consensus        86 -----------------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  147 (330)
T 3hym_B           86 -----------------YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAA  147 (330)
T ss_dssp             -----------------CTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             -----------------CcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHH
Confidence                             1124556667777777777 7777777777777643 23455667777777777888888888


Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010881          243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP  319 (498)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  319 (498)
                      ++.+.+.. +.+...+..+...|...|++++|...|+++.+   .+...+..+...+...|++++|...++++.+.....
T Consensus       148 ~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~  226 (330)
T 3hym_B          148 YFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAI  226 (330)
T ss_dssp             HHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhc
Confidence            87777765 44566777788888888899998888887654   356788888899999999999999999887742110


Q ss_pred             CchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      ..    ....+....++..+..++...|++++|...+++. ...| +...+..+...+...|++++|.+.++++++..|+
T Consensus       227 ~~----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  302 (330)
T 3hym_B          227 GN----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD  302 (330)
T ss_dssp             SC----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC
T ss_pred             cc----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC
Confidence            00    0011234689999999999999999999999998 3334 6788899999999999999999999999999999


Q ss_pred             CchHHHHHHHHh-HhcCCcc
Q 010881          398 HEGVHVLLSNIY-ASTEQWN  416 (498)
Q Consensus       398 ~~~~~~~l~~~~-~~~g~~~  416 (498)
                      ++..+..++.++ ...|+.+
T Consensus       303 ~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          303 DTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             CHHHHHHHHHHHHTTTTC--
T ss_pred             chHHHHHHHHHHHHHhCchh
Confidence            999999999988 4555543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=1.3e-17  Score=164.38  Aligned_cols=363  Identities=12%  Similarity=-0.011  Sum_probs=225.1

Q ss_pred             ChhHHHHHHHHhhc----CCCCChhHHHHHhhhcC-CCCcchHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCCCcc
Q 010881           19 DPFAVGKIIGFCSA----SDIGDLSHGYRLFVCLQ-YRTTFIWNTMIRGFAE----KNEPIKAFALYKQMLRSDFLPNNY   89 (498)
Q Consensus        19 ~~~~~~~l~~~~~~----~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~   89 (498)
                      ++..+..|...|..    .  ++++.|...|+... ..++.++..|...|..    .+++++|+..|++..+.|   +..
T Consensus        38 ~~~a~~~lg~~y~~g~~~~--~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~  112 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETT--KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ  112 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             CHHHHHHHHHHHHcCCCCC--cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            45555556666655    5  67777777776543 3455666666666666    677777777777776643   444


Q ss_pred             hHHHHHHHHHc----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----CCChhhHHHHhhccCC-CChhhHHHH
Q 010881           90 TFSFILRACAD----TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT----CNCMDPARKLFDMSVN-RDVISWTSL  160 (498)
Q Consensus        90 ~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l  160 (498)
                      .+..+-..|..    .+++++|...+++..+.|   +...+..|..+|..    .+++++|.+.|++..+ .+..++..+
T Consensus       113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~L  189 (490)
T 2xm6_A          113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQL  189 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            55555556655    567777777777776654   44555566666665    5677777777765443 355666666


Q ss_pred             HHHHHc----cCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 010881          161 INGYAK----SGQISIARQMFDKMPEK-NAVSWSAMINGYVQ----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACA  231 (498)
Q Consensus       161 i~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  231 (498)
                      ...|..    .++.++|.+.|++..+. +..++..+...|..    .+++++|...|++..+.|   +...+..+...+.
T Consensus       190 g~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~  266 (490)
T 2xm6_A          190 GYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILE  266 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence            666666    67777777777665432 45566666666665    667777777777766543   2334444444454


Q ss_pred             c----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-----CCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcC-
Q 010881          232 F----LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC-----GCIETACSVFDSMPN-RDVFAYTSLISGLANHD-  300 (498)
Q Consensus       232 ~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~-  300 (498)
                      .    .++.++|...++...+.+   +...+..+...|...     +++++|...|++..+ .+...+..|...|...| 
T Consensus       267 ~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~  343 (490)
T 2xm6_A          267 QGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGS  343 (490)
T ss_dssp             HTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Confidence            4    567777777777666554   344555666666665     677777777766554 34556666666666544 


Q ss_pred             --ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010881          301 --QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREMPIEPDNYVLGALLNA  374 (498)
Q Consensus       301 --~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~  374 (498)
                        +.++|..+|++..+.|               +...+..|...|..    .+++++|...|++.--..+...+..+...
T Consensus       344 ~~~~~~A~~~~~~a~~~~---------------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~  408 (490)
T 2xm6_A          344 EEEHKKAVEWFRKAAAKG---------------EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEI  408 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence              5667777777766643               35666667776666    67777777777766111245566666666


Q ss_pred             HHh----cCCHHHHHHHHHHHHhcCCC---CchHHHHHHHHhH
Q 010881          375 CRV----HGDVDLGKETVESLVERSLD---HEGVHVLLSNIYA  410 (498)
Q Consensus       375 ~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~  410 (498)
                      |..    .+++++|...|+++.+.+|+   ++.....++.++.
T Consensus       409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~  451 (490)
T 2xm6_A          409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA  451 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH
Confidence            666    67777777777777776643   4444445544443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.83  E-value=8.4e-19  Score=166.10  Aligned_cols=277  Identities=13%  Similarity=-0.010  Sum_probs=215.8

Q ss_pred             hCCChhhHHH-HhhccCC--C-----ChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhH
Q 010881          135 TCNCMDPARK-LFDMSVN--R-----DVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKE  203 (498)
Q Consensus       135 ~~g~~~~a~~-~~~~~~~--~-----~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~  203 (498)
                      ..|++++|.+ .|++...  +     +...+..+...+.+.|++++|...|+++.+   .+..++..+..++...|++++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence            4467777777 7765432  1     345677788888888888888888887753   356778888888888888888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHH---------------HHHHHHhc
Q 010881          204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTA---------------IIDMYAKC  268 (498)
Q Consensus       204 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~  268 (498)
                      |...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..               .+..+...
T Consensus       117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (368)
T 1fch_A          117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  194 (368)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence            888888888764 3466778888888888888888888888888764 333322221               23333488


Q ss_pred             CCHHHHHHHHhhCCC--C---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881          269 GCIETACSVFDSMPN--R---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL  343 (498)
Q Consensus       269 g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~  343 (498)
                      |++++|...|+++.+  |   +..++..+...+...|++++|...|+++...  .|+           +..++..+..++
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~-----------~~~~~~~l~~~~  261 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPN-----------DYLLWNKLGATL  261 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcC-----------CHHHHHHHHHHH
Confidence            999999999998764  3   4678999999999999999999999999875  333           578999999999


Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------chHHHHHHHHhH
Q 010881          344 GRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH-----------EGVHVLLSNIYA  410 (498)
Q Consensus       344 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~l~~~~~  410 (498)
                      ...|++++|...|+++ ...| +..++..+...|...|++++|...++++++..|++           ..++..++.+|.
T Consensus       262 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  341 (368)
T 1fch_A          262 ANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS  341 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHH
Confidence            9999999999999998 4445 68899999999999999999999999999988877           778999999999


Q ss_pred             hcCCcchHHHHHHhhh
Q 010881          411 STEQWNGVEKVRRGME  426 (498)
Q Consensus       411 ~~g~~~~a~~~~~~m~  426 (498)
                      ..|++++|..++++..
T Consensus       342 ~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          342 MLGQSDAYGAADARDL  357 (368)
T ss_dssp             HHTCGGGHHHHHTTCH
T ss_pred             HhCChHhHHHhHHHHH
Confidence            9999999999987543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=1.3e-17  Score=155.12  Aligned_cols=281  Identities=11%  Similarity=0.013  Sum_probs=188.8

Q ss_pred             CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 010881           50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL  129 (498)
Q Consensus        50 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  129 (498)
                      ..++..+..+...+...|++++|+.+|+++.+.. +.+...+..++..+...|++++|..+++++.+..+. +...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence            3577788889999999999999999999998753 235667777888999999999999999999998643 56777778


Q ss_pred             HHHHHhCC-ChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHh
Q 010881          130 LHLYATCN-CMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFK  202 (498)
Q Consensus       130 ~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~  202 (498)
                      ...+...| ++++|.+.|++....   +..+|..+...+...|++++|...|++..+   .+...+..+...+...|+++
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            88888888 888888888765422   334455555555555555555555554431   12333444444555555555


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881          203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP  282 (498)
Q Consensus       203 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  282 (498)
                      +|...+++..+                                   .. +.+..++..+...|...|++++|...++++.
T Consensus       177 ~A~~~~~~al~-----------------------------------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          177 LAERFFSQALS-----------------------------------IA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             HHHHHHHHHHT-----------------------------------TC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-----------------------------------hC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            55555555444                                   32 3344555555555555555555555555443


Q ss_pred             C------------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881          283 N------------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE  350 (498)
Q Consensus       283 ~------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  350 (498)
                      +            .+..++..+...+...|++++|...+++..+.  .|+           +...+..+..++...|+++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~-----------~~~~~~~la~~~~~~g~~~  287 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQ-----------NASTYSAIGYIHSLMGNFE  287 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CSHHHHHHHHHHHHHTCHH
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--Ccc-----------chHHHHHHHHHHHHhccHH
Confidence            1            23457777777888888888888888887764  233           4677888888888888888


Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCCH
Q 010881          351 AAKKVVREM-PIEP-DNYVLGALLNAC-RVHGDV  381 (498)
Q Consensus       351 ~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~~  381 (498)
                      +|...+++. .+.| +...+..+..++ ...|+.
T Consensus       288 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          288 NAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence            888888887 5556 566666666666 444543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.82  E-value=7.8e-17  Score=158.75  Aligned_cols=360  Identities=12%  Similarity=0.047  Sum_probs=300.7

Q ss_pred             HHHhhhc-CCCCcchHHHHHHHHHh----CCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHc----cCCcHHHHHHHH
Q 010881           42 YRLFVCL-QYRTTFIWNTMIRGFAE----KNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD----TSCLFVGLICHA  112 (498)
Q Consensus        42 ~~~~~~~-~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~  112 (498)
                      ...+... ...++.++..+...|..    .+++++|+..|++..+.|   +...+..|-..|..    .+++++|..+++
T Consensus        27 ~~~~~~~a~~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  103 (490)
T 2xm6_A           27 LEQLKQKAESGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYK  103 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            4444433 35578888888888888    899999999999998864   56677788888888    899999999999


Q ss_pred             HHHHhCCCCchhHHHHHHHHHHh----CCChhhHHHHhhccCCC-ChhhHHHHHHHHHc----cCCHHHHHHHHhhCCC-
Q 010881          113 QVIRLGWESYDFVLNGLLHLYAT----CNCMDPARKLFDMSVNR-DVISWTSLINGYAK----SGQISIARQMFDKMPE-  182 (498)
Q Consensus       113 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~-  182 (498)
                      +..+.|   +...+..|...|..    .+++++|.+.|++.... ++.++..+...|..    .++.++|.+.|++..+ 
T Consensus       104 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          104 KAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            999876   56677778888888    88999999999886644 67788888888887    8899999999988754 


Q ss_pred             CChhHHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCC
Q 010881          183 KNAVSWSAMINGYVQ----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF----LGALDQGRWIHAYVDRNGIELD  254 (498)
Q Consensus       183 ~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~  254 (498)
                      .+...+..+...|..    .+++++|...|++..+.|   +...+..+...+..    .+++++|..+++...+.+   +
T Consensus       181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  254 (490)
T 2xm6_A          181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N  254 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred             CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            367888889999988    899999999999998865   45566667777765    789999999999988765   4


Q ss_pred             hhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCchhh
Q 010881          255 IILGTAIIDMYAK----CGCIETACSVFDSMPN-RDVFAYTSLISGLANH-----DQSASAIELFMRMQLEGVVPNESMS  324 (498)
Q Consensus       255 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~  324 (498)
                      ...+..+...|..    .++.++|...|++..+ .+...+..|...|...     ++.++|...|++..+.+        
T Consensus       255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--------  326 (490)
T 2xm6_A          255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--------  326 (490)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT--------
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC--------
Confidence            5677778888887    8999999999998775 4677888888888887     89999999999998865        


Q ss_pred             hhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 010881          325 EIYGIEPGVQHYGCLVDLLGRAG---MLEAAKKVVREMPIEPDNYVLGALLNACRV----HGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       325 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~  397 (498)
                             +...+..+...|...|   ++++|.+.|++.--..++..+..+...|..    .+++++|..+|+++.+.+  
T Consensus       327 -------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--  397 (490)
T 2xm6_A          327 -------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--  397 (490)
T ss_dssp             -------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred             -------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--
Confidence                   4678888888888766   889999999988112567888889999988    899999999999999865  


Q ss_pred             CchHHHHHHHHhHh----cCCcchHHHHHHhhhhCCc
Q 010881          398 HEGVHVLLSNIYAS----TEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       398 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~  430 (498)
                      ++.++..|+.+|..    .+++++|...|++..+.+.
T Consensus       398 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          398 LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence            56789999999998    8999999999999988763

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.82  E-value=7.8e-19  Score=163.52  Aligned_cols=296  Identities=11%  Similarity=0.124  Sum_probs=137.3

Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc
Q 010881           22 AVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADT  101 (498)
Q Consensus        22 ~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  101 (498)
                      ..+.|+.   +.  |++++|.+++++++.|+  +|..++.++.+.|++++|++.|.+.      +|..+|..++.++...
T Consensus         8 a~~~ll~---~~--~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~   74 (449)
T 1b89_A            8 AVQVLIE---HI--GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS   74 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHH---Hc--cCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC
Confidence            3444444   45  88999999999996664  8999999999999999999999763      6778999999999999


Q ss_pred             CCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCC
Q 010881          102 SCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP  181 (498)
Q Consensus       102 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~  181 (498)
                      |++++|..+++...+.  .+++.+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|.+++|...|..+ 
T Consensus        75 g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-  148 (449)
T 1b89_A           75 GNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-  148 (449)
T ss_dssp             ------------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-
Confidence            9999999988887774  44578889999999999999999988864   77789999999999999999999999988 


Q ss_pred             CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 010881          182 EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI  261 (498)
Q Consensus       182 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  261 (498)
                          ..|..++.++.+.|++++|.+.+.++      .+..+|..++.+|...|+++.|......     +...+.-...+
T Consensus       149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~l  213 (449)
T 1b89_A          149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEEL  213 (449)
T ss_dssp             ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHH
T ss_pred             ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHH
Confidence                47999999999999999999999988      3788999999999999999999655443     23344445578


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhc--CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881          262 IDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANH--DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY  336 (498)
Q Consensus       262 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~  336 (498)
                      +..|.+.|++++|..+++....   .....|+-|.-+|++-  ++..+.++.|..-  -++.|   ++   ...-+...|
T Consensus       214 v~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k---~~---~~~~~~~~w  285 (449)
T 1b89_A          214 INYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPK---VL---RAAEQAHLW  285 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHH---HH---HHHHTTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcH---HH---HHHHHHHHH
Confidence            9999999999999999998764   3556788887777764  3444454444321  11111   00   000146789


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhC
Q 010881          337 GCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       337 ~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                      ..++..|..-++++.|....-+-
T Consensus       286 ~e~~~ly~~~~e~d~A~~tm~~h  308 (449)
T 1b89_A          286 AELVFLYDKYEEYDNAIITMMNH  308 (449)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHhhchHHHHHHHHHhC
Confidence            99999999999999998876665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=1e-16  Score=159.54  Aligned_cols=393  Identities=10%  Similarity=0.020  Sum_probs=281.2

Q ss_pred             CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCC---CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHH
Q 010881           17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQY---RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSF   93 (498)
Q Consensus        17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~   93 (498)
                      +-+...|..++.. .+.  |+++.|+.+|+++..   .+...|..++..+.+.|++++|..+|+++...  .|+...|..
T Consensus        10 P~~~~~w~~l~~~-~~~--~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~   84 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQN--QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKC   84 (530)
T ss_dssp             TTCHHHHHHHHHH-HHS--SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHH
T ss_pred             CCCHHHHHHHHHH-HHh--CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHH
Confidence            3477889999984 677  999999999999763   35668999999999999999999999999884  477777776


Q ss_pred             HHHHH-HccCCcHHHHH----HHHHHHHh-CCCC-chhHHHHHHHHHHh---------CCChhhHHHHhhccCC-CCh--
Q 010881           94 ILRAC-ADTSCLFVGLI----CHAQVIRL-GWES-YDFVLNGLLHLYAT---------CNCMDPARKLFDMSVN-RDV--  154 (498)
Q Consensus        94 ll~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~-~~~--  154 (498)
                      .+... ...|+++.|.+    +|+..+.. |..| +...|...+.....         .|+++.|..+|++... |+.  
T Consensus        85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~  164 (530)
T 2ooe_A           85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI  164 (530)
T ss_dssp             HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence            66533 34577776665    67776654 5443 45677777776654         6889999999998764 321  


Q ss_pred             -hhHHHHHHHH-------------HccCCHHHHHHHHhh-------CC------CCC--------hhHHHHHHHHHHhC-
Q 010881          155 -ISWTSLINGY-------------AKSGQISIARQMFDK-------MP------EKN--------AVSWSAMINGYVQV-  198 (498)
Q Consensus       155 -~~~~~li~~~-------------~~~~~~~~A~~~~~~-------~~------~~~--------~~~~~~li~~~~~~-  198 (498)
                       ..|.......             .+.++++.|..++..       +.      .|+        ...|...+...... 
T Consensus       165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~  244 (530)
T 2ooe_A          165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP  244 (530)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence             2333222210             123456677765554       11      111        23455554433322 


Q ss_pred             ---CCH----hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHHhCCCCChhH
Q 010881          199 ---DLF----KEALEHFNYMQLCGFRPNHAGIVGALTACAF-------LGALD-------QGRWIHAYVDRNGIELDIIL  257 (498)
Q Consensus       199 ---g~~----~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~  257 (498)
                         ++.    +.+..+|++.+... +-+...|......+..       .|+++       +|..+++...+.-.+.+...
T Consensus       245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l  323 (530)
T 2ooe_A          245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL  323 (530)
T ss_dssp             SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred             ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence               232    47778888888752 3345566666666654       68877       88999988886323556888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCC--C-Ch-hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881          258 GTAIIDMYAKCGCIETACSVFDSMPN--R-DV-FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV  333 (498)
Q Consensus       258 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~  333 (498)
                      +..++..+.+.|++++|..+|+++.+  | +. ..|..++..+.+.|+.++|..+|++..+.  .|+           +.
T Consensus       324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~-----------~~  390 (530)
T 2ooe_A          324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ART-----------RH  390 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTC-----------CT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCC-----------ch
Confidence            99999999999999999999998764  3 32 47888888888899999999999998774  222           23


Q ss_pred             HHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch----HHHHHH
Q 010881          334 QHYGCLVDL-LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG----VHVLLS  406 (498)
Q Consensus       334 ~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~  406 (498)
                      ..|...+.. +...|+.++|..+|++. ...| +...|..++..+...|+.++|..+|++++...|.++.    .+...+
T Consensus       391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~  470 (530)
T 2ooe_A          391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL  470 (530)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence            333333322 34689999999999987 3335 6788889999999999999999999999998776554    677778


Q ss_pred             HHhHhcCCcchHHHHHHhhhhC
Q 010881          407 NIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       407 ~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ......|+.+.+..+.+++.+.
T Consensus       471 ~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          471 AFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            8888889999999999888754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.81  E-value=1.7e-17  Score=151.15  Aligned_cols=265  Identities=10%  Similarity=0.002  Sum_probs=172.6

Q ss_pred             HHhCCChhhHHHHhhccCCCCh----hhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHH
Q 010881          133 YATCNCMDPARKLFDMSVNRDV----ISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHF  208 (498)
Q Consensus       133 ~~~~g~~~~a~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  208 (498)
                      ....|++..|+..+++....++    .....+.++|...|+++.|...++....|+..++..+...+...++.++|++.+
T Consensus         9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l   88 (291)
T 3mkr_A            9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAEL   88 (291)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            3456777777777766554332    233456677777777777777776654456667777777777777888888888


Q ss_pred             HHHHHcCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CC
Q 010881          209 NYMQLCGFRPNHA-GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RD  285 (498)
Q Consensus       209 ~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~  285 (498)
                      +++...+..|+.. .+..+...+...|++++|...++.      +.+...+..++..|.+.|++++|.+.|+++.+  |+
T Consensus        89 ~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  162 (291)
T 3mkr_A           89 DREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDED  162 (291)
T ss_dssp             HHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC
Confidence            8877766555443 344445666777777777777765      45666777777777777777777777777653  33


Q ss_pred             hhHHHHH----HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 010881          286 VFAYTSL----ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P  360 (498)
Q Consensus       286 ~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  360 (498)
                      .. ...+    +..+...|++++|..+|+++.+.  .|+           +...++.+..++.+.|++++|...|++. .
T Consensus       163 ~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~-----------~~~~~~~la~~~~~~g~~~eA~~~l~~al~  228 (291)
T 3mkr_A          163 AT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSP-----------TLLLLNGQAACHMAQGRWEAAEGVLQEALD  228 (291)
T ss_dssp             CH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            21 1222    22333447777777777777764  233           5677777777777778888887777776 3


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881          361 IEP-DNYVLGALLNACRVHGDVDL-GKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV  421 (498)
Q Consensus       361 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  421 (498)
                      ..| ++.++..++..+...|+.++ +.++++++++.+|+++.+.    ....+.+.++++..-
T Consensus       229 ~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~  287 (291)
T 3mkr_A          229 KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ  287 (291)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence            344 56677777777777777754 4677777777777776432    334444555554443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=3.1e-18  Score=162.11  Aligned_cols=257  Identities=11%  Similarity=-0.026  Sum_probs=208.4

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010881          153 DVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA  229 (498)
Q Consensus       153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  229 (498)
                      +...+..+...+.+.|++++|...|+++.+   .+..+|..+..++...|++++|...|+++.+.. +.+..++..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            455688888888888999999988887753   367788889999999999999999999988763 3456788888888


Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCC----------hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C---ChhHHHHHHH
Q 010881          230 CAFLGALDQGRWIHAYVDRNGIELD----------IILGTAIIDMYAKCGCIETACSVFDSMPN--R---DVFAYTSLIS  294 (498)
Q Consensus       230 ~~~~~~~~~a~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~  294 (498)
                      +...|++++|...++.+.+.. +.+          ..++..+...|...|++++|...|+++.+  |   +..++..+..
T Consensus       143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            999999999999999887754 222          22334457889999999999999998864  3   5778999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010881          295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALL  372 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  372 (498)
                      .|...|++++|...|+++.+.  .|+           +..+|..+..+|...|++++|...|+++ ...| +..++..+.
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  288 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTV--RPE-----------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG  288 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            999999999999999999885  333           5889999999999999999999999998 4445 588999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC------------CchHHHHHHHHhHhcCCcchHHHHHHh
Q 010881          373 NACRVHGDVDLGKETVESLVERSLD------------HEGVHVLLSNIYASTEQWNGVEKVRRG  424 (498)
Q Consensus       373 ~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~  424 (498)
                      ..|...|++++|...++++++..|+            +...+..++.++...|+.+.+.++.++
T Consensus       289 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          289 ISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999999999999998876            356788999999999999999888765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=2.1e-16  Score=143.86  Aligned_cols=250  Identities=10%  Similarity=0.036  Sum_probs=205.8

Q ss_pred             HHHccCCHHHHHHHHhhCCCCCh----hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHH
Q 010881          163 GYAKSGQISIARQMFDKMPEKNA----VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQ  238 (498)
Q Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  238 (498)
                      -....|++..|+..++.....++    .....+.++|...|+++.|+..++..    -+|+..++..+...+...++.++
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHH
Confidence            34456999999999988765432    34456789999999999999877552    35677788889999999999999


Q ss_pred             HHHHHHHHHHhCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010881          239 GRWIHAYVDRNGIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGV  317 (498)
Q Consensus       239 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  317 (498)
                      |...++.+...+..| +...+..+..+|...|++++|.+.+++  ..+...+..++..+.+.|++++|...|+++.+.. 
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~-  160 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD-  160 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-
Confidence            999999998876544 566777888999999999999999999  5678899999999999999999999999998862 


Q ss_pred             CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                       |+.         +.......++..+...|++++|..+|+++  ..+.+...++.+..++...|++++|++.++++++.+
T Consensus       161 -p~~---------~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          161 -EDA---------TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             -TTC---------HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             -cCc---------HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence             441         00111122344455669999999999998  333588899999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHhHhcCCcch-HHHHHHhhhhCC
Q 010881          396 LDHEGVHVLLSNIYASTEQWNG-VEKVRRGMEDNE  429 (498)
Q Consensus       396 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~  429 (498)
                      |+++.++..++.++...|+.++ +.++++++.+..
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~  265 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH  265 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999986 568888887644

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.78  E-value=7.9e-17  Score=158.01  Aligned_cols=366  Identities=10%  Similarity=-0.122  Sum_probs=227.8

Q ss_pred             CcchHHHHHHHHHhCCCchHHHHHHHHhHHC-----C--CCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCC----
Q 010881           52 TTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-----D--FLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGW----  119 (498)
Q Consensus        52 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----  119 (498)
                      ....||.+...+...|++++|++.|++..+.     +  ..| ...+|+.+..+|...|++++|...++++.+...    
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3556888888888888888888888876541     1  122 234677788888888888888888887765311    


Q ss_pred             --C-CchhHHHHHHHHHHh--CCChhhHHHHhhccC--CC-ChhhHHHHHHH---HHccCCHHHHHHHHhhCC---CCCh
Q 010881          120 --E-SYDFVLNGLLHLYAT--CNCMDPARKLFDMSV--NR-DVISWTSLING---YAKSGQISIARQMFDKMP---EKNA  185 (498)
Q Consensus       120 --~-~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~--~~-~~~~~~~li~~---~~~~~~~~~A~~~~~~~~---~~~~  185 (498)
                        . ....++..+..++..  .+++++|.+.|++..  .| ++..+..+..+   +...++.++|++.|++..   ..+.
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~  209 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ  209 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence              1 123445444444444  346788888887754  23 44455544444   334566666766666543   2245


Q ss_pred             hHHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHH
Q 010881          186 VSWSAMINGYVQ----VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAI  261 (498)
Q Consensus       186 ~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  261 (498)
                      .++..+...+..    .+++++|.+.+++..... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+
T Consensus       210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l  287 (472)
T 4g1t_A          210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQI  287 (472)
T ss_dssp             HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHH
Confidence            555555544443    356778888888877653 3455667777888888888888888888887765 5556666666


Q ss_pred             HHHHHhc-------------------CCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010881          262 IDMYAKC-------------------GCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP  319 (498)
Q Consensus       262 ~~~~~~~-------------------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  319 (498)
                      ..+|...                   +.++.|...|++..+   .+..++..+...|...|++++|...|++..+....|
T Consensus       288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~  367 (472)
T 4g1t_A          288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP  367 (472)
T ss_dssp             HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence            6665432                   235667777766543   456788899999999999999999999998753222


Q ss_pred             CchhhhhhCCCCChHHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          320 NESMSEIYGIEPGVQHYGCLVD-LLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      ..          ....+..+.. .+...|+.++|+..|++. .+.|+......         ....+.+++++.++.+|+
T Consensus       368 ~~----------~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~~~~l~~~p~  428 (472)
T 4g1t_A          368 VA----------KQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIAKMRLSKNGA  428 (472)
T ss_dssp             HH----------HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHHHHHHHHCC-
T ss_pred             hH----------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHHHHHHHhCCC
Confidence            10          0122333333 345789999999999987 66676433322         234566778888999999


Q ss_pred             CchHHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeE
Q 010881          398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSL  438 (498)
Q Consensus       398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  438 (498)
                      ++.++..++.+|...|++++|++.|++..+.+...+...+|
T Consensus       429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW  469 (472)
T ss_dssp             CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence            99999999999999999999999999998876543333333

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.78  E-value=2.2e-15  Score=156.17  Aligned_cols=349  Identities=11%  Similarity=0.047  Sum_probs=260.7

Q ss_pred             ChhHHHHHHHHhhcCCCCChhHHHHHhhhcC-CC-----CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHH
Q 010881           19 DPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-YR-----TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS   92 (498)
Q Consensus        19 ~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~   92 (498)
                      ++.-....+..|...  |.+.+|.++++++. .+     +...-+.++.+..+. +..+..+..++.-.       ....
T Consensus       984 ~PeeVs~~vKaf~~a--glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~ 1053 (1630)
T 1xi4_A          984 DPEEVSVTVKAFMTA--DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAP 1053 (1630)
T ss_pred             CHHHhHHHHHHHHhC--CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHH
Confidence            334446667777777  88888888888765 22     234556666666665 55555555555432       1133


Q ss_pred             HHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHH
Q 010881           93 FILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI  172 (498)
Q Consensus        93 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  172 (498)
                      .+...+...|.+++|..+|++..     ......+.+   +...+++++|.++.++.  .++.+|..+..++.+.|++++
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aerv--n~p~vWsqLAKAql~~G~~kE 1123 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERC--NEPAVWSQLAKAQLQKGMVKE 1123 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCHHH
Confidence            46677788888888888888862     111222222   22678888888888866  346788899999999999999


Q ss_pred             HHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC
Q 010881          173 ARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE  252 (498)
Q Consensus       173 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  252 (498)
                      |++.|.+.  .|...|..++.++.+.|++++|.++|...++..  ++....+.++.+|++.++++....+.    +   .
T Consensus      1124 AIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A         1124 AIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred             HHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence            99999775  567788889999999999999999998877654  33333335888888888887544442    1   4


Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC
Q 010881          253 LDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG  332 (498)
Q Consensus       253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~  332 (498)
                      ++...+..+.+.|...|++++|..+|..+     ..|..+...|.+.|++++|.+.+++..                  +
T Consensus      1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA~------------------n 1249 (1630)
T 1xi4_A         1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKAN------------------S 1249 (1630)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHhC------------------C
Confidence            45666777889999999999999999985     589999999999999999999998862                  3


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      ..+|..+..+|...|++..|......  +..++..+..++..|.+.|.+++|+.+++..+.+++.+...|..|+.+|.+-
T Consensus      1250 ~~aWkev~~acve~~Ef~LA~~cgl~--Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1250 TRTWKEVCFACVDGKEFRLAQMCGLH--IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHh--hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC
Confidence            68899999999999999999887764  3456667779999999999999999999999999999988888887777664


Q ss_pred             --CCcchHHHHHH
Q 010881          413 --EQWNGVEKVRR  423 (498)
Q Consensus       413 --g~~~~a~~~~~  423 (498)
                        ++..++.++|.
T Consensus      1328 ~peklmEhlk~f~ 1340 (1630)
T 1xi4_A         1328 KPQKMREHLELFW 1340 (1630)
T ss_pred             CHHHHHHHHHHHH
Confidence              55556666654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.78  E-value=1e-17  Score=158.57  Aligned_cols=284  Identities=12%  Similarity=-0.028  Sum_probs=172.4

Q ss_pred             chHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 010881           54 FIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY  133 (498)
Q Consensus        54 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  133 (498)
                      ..+..+...+.+.|++++|+..|+++.+.. +.+..++..+..++...|++++|...++++++..+ .+..++..+..++
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~  142 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSF  142 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            344445555555555555555555555422 11333444444555555555555555555554432 2344444444455


Q ss_pred             HhCCChhhHHHHhhccCCC---ChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHH
Q 010881          134 ATCNCMDPARKLFDMSVNR---DVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNY  210 (498)
Q Consensus       134 ~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  210 (498)
                      ...|++++|.+.++++...   +...+..+...       ..       ...+ ...+..+. .+...|++++|...|++
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~-------~~~~-~~~~~~~~-~~~~~~~~~~A~~~~~~  206 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG-------GAGL-GPSKRILG-SLLSDSLFLEVKELFLA  206 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC------------------------------CTTH-HHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh-------hhcc-cHHHHHHH-HHhhcccHHHHHHHHHH
Confidence            5555555554444433211   11111000000       00       0000 00111233 33388999999999999


Q ss_pred             HHHcCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh
Q 010881          211 MQLCGFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDV  286 (498)
Q Consensus       211 m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~  286 (498)
                      +.+..... +..++..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+   .+.
T Consensus       207 a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  285 (368)
T 1fch_A          207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI  285 (368)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence            98764221 47788889999999999999999999988875 56778899999999999999999999998753   467


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE  358 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  358 (498)
                      .++..+...|...|++++|...|+++...  .|+..-...........+|..+..+|...|+.++|..++++
T Consensus       286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          286 RSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            78999999999999999999999998874  22200000000011267788888888888888888877764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=3.5e-17  Score=152.46  Aligned_cols=276  Identities=10%  Similarity=0.020  Sum_probs=141.7

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR   81 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~   81 (498)
                      ++|.++.+.+      +++.+|..|..++.+.  |++++|.+.|.+.  +|...|..++.++...|++++|+..++..++
T Consensus        20 d~A~~fae~~------~~~~vWs~La~A~l~~--g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark   89 (449)
T 1b89_A           20 DRAYEFAERC------NEPAVWSQLAKAQLQK--GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARK   89 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhC------CChHHHHHHHHHHHHc--CCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            3455555544      4556999999999999  9999999999764  6777999999999999999999998877776


Q ss_pred             CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881           82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI  161 (498)
Q Consensus        82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li  161 (498)
                      .  .+++.+.+.++.+|.+.|+++++.++++       .|+..+++.+...|...|.+++|..+|..+     ..|..++
T Consensus        90 ~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA  155 (449)
T 1b89_A           90 K--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLA  155 (449)
T ss_dssp             ---------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHH
T ss_pred             h--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHH
Confidence            3  4567889999999999999999988874       367779999999999999999999999977     5899999


Q ss_pred             HHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHH
Q 010881          162 NGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRW  241 (498)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  241 (498)
                      .++.+.|++++|.+.+.++.  ++.+|..++.+|...|+++.|......+     ..++.....++..|.+.|.+++|..
T Consensus       156 ~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eEai~  228 (449)
T 1b89_A          156 STLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELIT  228 (449)
T ss_dssp             HHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999994  8899999999999999999996655542     2333345578899999999999999


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHh--cCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHHHHH
Q 010881          242 IHAYVDRNGIELDIILGTAIIDMYAK--CGCIETACSVFDSMPN--------RDVFAYTSLISGLANHDQSASAIELF  309 (498)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~  309 (498)
                      +++...... +-....|+-|.-+|++  -+++.+.++.|..-..        .+...|.-+...|.+.++++.|....
T Consensus       229 lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          229 MLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             HHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            999988665 5667788888888876  4567777777775543        25678999999999999999888743

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.77  E-value=3.7e-17  Score=151.83  Aligned_cols=257  Identities=11%  Similarity=-0.009  Sum_probs=189.4

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 010881          156 SWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF  232 (498)
Q Consensus       156 ~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  232 (498)
                      .+..+...+...|++++|..+|+++.+   .+...+..+..++...|++++|...|+++.+.. +.+..++..+...+..
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~  101 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN  101 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence            344455555555666666666555431   245566666666777777777777777766642 2345566666666667


Q ss_pred             cCChHHHHHHHHHHHHhCCCCChhHHHHH--------------HH-HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHH
Q 010881          233 LGALDQGRWIHAYVDRNGIELDIILGTAI--------------ID-MYAKCGCIETACSVFDSMPN---RDVFAYTSLIS  294 (498)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  294 (498)
                      .|++++|...++.+.+.. +.+...+..+              .. .+...|++++|...++++.+   .+..++..+..
T Consensus       102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~  180 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGV  180 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            777777777777666553 2223333222              22 36777888999988887653   36778888999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010881          295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALL  372 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  372 (498)
                      .+...|++++|...++++.+.  .|+           +..++..+..++...|++++|...++++ ...| +..++..+.
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~  247 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVEL--RPD-----------DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA  247 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            999999999999999998875  233           5788999999999999999999999987 3334 688899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC------------CchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          373 NACRVHGDVDLGKETVESLVERSLD------------HEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       373 ~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ..+...|++++|.+.++++++..|.            +...+..++.++...|++++|..++++..+
T Consensus       248 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          248 VSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998            677899999999999999999999976643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.76  E-value=2.3e-17  Score=156.02  Aligned_cols=233  Identities=8%  Similarity=-0.098  Sum_probs=197.4

Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      +...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            45568899999999999999999999999864 4467789999999999999999999999999886 667889999999


Q ss_pred             HHHhcCCHHHHHHHHhhCCC--C-C----------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881          264 MYAKCGCIETACSVFDSMPN--R-D----------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE  330 (498)
Q Consensus       264 ~~~~~g~~~~A~~~~~~~~~--~-~----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~  330 (498)
                      +|...|++++|...|+++.+  | +          ...+..+...+...|++++|...++++.+..  |+         .
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~---------~  210 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN--GD---------M  210 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS--CS---------S
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--cC---------c
Confidence            99999999999999998864  2 1          2233445788999999999999999998853  32         1


Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                      ++..++..+...|...|++++|...|+++ ...| +..+|..+..+|...|++++|+..++++++..|+++.++..++.+
T Consensus       211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  290 (365)
T 4eqf_A          211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGIS  290 (365)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            25789999999999999999999999998 3344 688999999999999999999999999999999999999999999


Q ss_pred             hHhcCCcchHHHHHHhhhhCC
Q 010881          409 YASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       409 ~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      |...|++++|...++++.+..
T Consensus       291 ~~~~g~~~~A~~~~~~al~~~  311 (365)
T 4eqf_A          291 CINLGAYREAVSNFLTALSLQ  311 (365)
T ss_dssp             HHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC
Confidence            999999999999999997643

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.75  E-value=2e-15  Score=150.28  Aligned_cols=361  Identities=9%  Similarity=0.009  Sum_probs=267.9

Q ss_pred             CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHH
Q 010881           50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNG  128 (498)
Q Consensus        50 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  128 (498)
                      ..+...|..++. +.+.|++++|..+|+++.+.  .| +...|..++..+.+.|+++.|..+|+++++..  |+...|..
T Consensus        10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~   84 (530)
T 2ooe_A           10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC   84 (530)
T ss_dssp             TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence            346778999998 47899999999999999983  35 56678899999999999999999999999875  46667777


Q ss_pred             HHHH-HHhCCChhhHHH----HhhccC-----C-CChhhHHHHHHHHHc---------cCCHHHHHHHHhhCCC-CCh--
Q 010881          129 LLHL-YATCNCMDPARK----LFDMSV-----N-RDVISWTSLINGYAK---------SGQISIARQMFDKMPE-KNA--  185 (498)
Q Consensus       129 l~~~-~~~~g~~~~a~~----~~~~~~-----~-~~~~~~~~li~~~~~---------~~~~~~A~~~~~~~~~-~~~--  185 (498)
                      ++.. ....|+.+.|.+    +|++..     . .+...|...+....+         .|+++.|..+|++... |..  
T Consensus        85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~  164 (530)
T 2ooe_A           85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINI  164 (530)
T ss_dssp             HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTH
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhH
Confidence            7753 345688887765    666542     2 355678777776654         6899999999998764 321  


Q ss_pred             -hHHHHHHHHH-------------HhCCCHhHHHHHHHHHH------HcC---CCCCH--------HHHHHHHHHHhcc-
Q 010881          186 -VSWSAMINGY-------------VQVDLFKEALEHFNYMQ------LCG---FRPNH--------AGIVGALTACAFL-  233 (498)
Q Consensus       186 -~~~~~li~~~-------------~~~g~~~~a~~~~~~m~------~~g---~~p~~--------~~~~~ll~~~~~~-  233 (498)
                       ..|.......             .+.+++..|..+++++.      +..   ++|+.        ..|...+...... 
T Consensus       165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~  244 (530)
T 2ooe_A          165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP  244 (530)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence             2333222211             12456777877777632      111   24431        3444444332221 


Q ss_pred             ---CCh----HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCCHH-------HHHHHHhhCCC---C-ChhH
Q 010881          234 ---GAL----DQGRWIHAYVDRNGIELDIILGTAIIDMYAK-------CGCIE-------TACSVFDSMPN---R-DVFA  288 (498)
Q Consensus       234 ---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~~~~  288 (498)
                         ++.    +.+..+|+++.... +.+..+|..++..+.+       .|+++       +|..+|++..+   | +...
T Consensus       245 ~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l  323 (530)
T 2ooe_A          245 LRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL  323 (530)
T ss_dssp             SCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred             ccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence               233    36778898888764 6678899988888876       78877       89999998764   3 5778


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H
Q 010881          289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG-VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-N  365 (498)
Q Consensus       289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~  365 (498)
                      |..++..+.+.|++++|..+|+++.+.  .|+           + ...|..++..+.+.|++++|..+|++. ...|+ .
T Consensus       324 ~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~  390 (530)
T 2ooe_A          324 YFAYADYEESRMKYEKVHSIYNRLLAI--EDI-----------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  390 (530)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS--SSS-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCT
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhCc--ccc-----------CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCch
Confidence            999999999999999999999999884  333           2 258999999999999999999999998 44443 3


Q ss_pred             HHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          366 YVLGALLNA-CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       366 ~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ..|...... +...|+.++|..+|+++++..|+++..+..++..+.+.|+.++|..+|++....+
T Consensus       391 ~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          391 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            333332222 3468999999999999999999999999999999999999999999999998764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.73  E-value=3.2e-14  Score=147.68  Aligned_cols=362  Identities=11%  Similarity=0.041  Sum_probs=274.4

Q ss_pred             HhHHHHHHHHhC--CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881            4 IKQIQSHLTVSG--TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR   81 (498)
Q Consensus         4 ~~~~~~~~~~~g--~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~   81 (498)
                      +.++++...-.+  +.-+....+.|+....+.   +..+..+..+....-+   ..-+...+...|.+++|..+|++...
T Consensus      1004 aieLLEKivl~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~~d---~~eIA~Iai~lglyEEAf~IYkKa~~ 1077 (1630)
T 1xi4_A         1004 LIELLEKIVLDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLDNYD---APDIANIAISNELFEEAFAIFRKFDV 1077 (1630)
T ss_pred             HHHHHHHHHcCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhhhcc---HHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence            445555555221  123446777777766665   3444444444443222   45577888899999999999999621


Q ss_pred             CCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHH
Q 010881           82 SDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLI  161 (498)
Q Consensus        82 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li  161 (498)
                           .....+.++.   ..+++++|.++.++.      -+..+|..+..++...|++++|.+.|.+.  .|...|..++
T Consensus      1078 -----~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa 1141 (1630)
T 1xi4_A         1078 -----NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVV 1141 (1630)
T ss_pred             -----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHH
Confidence                 1222233332   678899999988866      35788999999999999999999999764  6788899999


Q ss_pred             HHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 010881          162 NGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG  239 (498)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  239 (498)
                      .++.+.|++++|.+.|....+  +++...+.++.+|++.+++++...+.    +   .|+...+..+...|...|++++|
T Consensus      1142 ~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA 1214 (1630)
T 1xi4_A         1142 QAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAA 1214 (1630)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999999987553  33334456999999999988644332    2   45667788899999999999999


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 010881          240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVP  319 (498)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  319 (498)
                      ..+|..+         ..|..+..+|++.|+++.|.+.+++.  .+..+|..+..+|...|++..|....-.+..     
T Consensus      1215 ~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv----- 1278 (1630)
T 1xi4_A         1215 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVCFACVDGKEFRLAQMCGLHIVV----- 1278 (1630)
T ss_pred             HHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHHHHHhhhhHHHHHHHHHHhhhc-----
Confidence            9999885         48999999999999999999999988  5668999999999999999999887665432     


Q ss_pred             CchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcC
Q 010881          320 NESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH--GDVDLGKETVESLVERS  395 (498)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~  395 (498)
                                  ++..+..++..|.+.|.+++|+.+++.. ++.| ....|.-|...|.+.  ++..++.+.|..-+...
T Consensus      1279 ------------~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A         1279 ------------HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred             ------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccc
Confidence                        3677889999999999999999999877 6666 455666666666554  45666666666555544


Q ss_pred             C-----CCchHHHHHHHHhHhcCCcchHHHHH
Q 010881          396 L-----DHEGVHVLLSNIYASTEQWNGVEKVR  422 (498)
Q Consensus       396 ~-----~~~~~~~~l~~~~~~~g~~~~a~~~~  422 (498)
                      |     .+...|..++..|.+.|+++.|....
T Consensus      1347 k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm 1378 (1630)
T 1xi4_A         1347 KVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 1378 (1630)
T ss_pred             hHhHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            4     56667889999999999999998543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.71  E-value=2.2e-16  Score=146.59  Aligned_cols=264  Identities=13%  Similarity=-0.012  Sum_probs=185.5

Q ss_pred             CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHc
Q 010881           87 NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAK  166 (498)
Q Consensus        87 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~  166 (498)
                      +...+..+...+...|++++|..+++++.+..+. +...+..+..++...|++++|.+.+++....              
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------------   84 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARML--------------   84 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------
Confidence            3445666777777888888888888888776543 5566666677777777777776666543211              


Q ss_pred             cCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH--------------HH--H
Q 010881          167 SGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL--------------TA--C  230 (498)
Q Consensus       167 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll--------------~~--~  230 (498)
                                    ...+..++..+...+...|++++|...++++.+..  |+.......+              ..  +
T Consensus        85 --------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (327)
T 3cv0_A           85 --------------DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFF  148 (327)
T ss_dssp             --------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCT
T ss_pred             --------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHH
Confidence                          11234455556666666666666666666665532  2211111111              22  5


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 010881          231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIE  307 (498)
Q Consensus       231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~  307 (498)
                      ...|++++|...++.+.+.. +.+..++..+...|...|++++|...++++.+   .+..++..+...+...|++++|..
T Consensus       149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  227 (327)
T 3cv0_A          149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALD  227 (327)
T ss_dssp             TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            66778888888888887765 55677888888888888888888888887653   356788888888999999999999


Q ss_pred             HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-------------CHHHHHHHHH
Q 010881          308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-------------DNYVLGALLN  373 (498)
Q Consensus       308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------------~~~~~~~l~~  373 (498)
                      .++++.+.  .|+           +..++..+..++...|++++|...++++ ...|             +..+|..+..
T Consensus       228 ~~~~a~~~--~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~  294 (327)
T 3cv0_A          228 AYNRALDI--NPG-----------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM  294 (327)
T ss_dssp             HHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred             HHHHHHHc--CCC-----------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence            99988774  233           5778888999999999999999999887 2223             3678888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC
Q 010881          374 ACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       374 ~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                      ++...|++++|..+++++++..
T Consensus       295 ~~~~~g~~~~A~~~~~~~l~~~  316 (327)
T 3cv0_A          295 LLNVMNRPDLVELTYAQNVEPF  316 (327)
T ss_dssp             HHHHTTCHHHHHHHTTCCSHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHhc
Confidence            9999999999999888766543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.71  E-value=3.1e-15  Score=146.67  Aligned_cols=362  Identities=9%  Similarity=-0.049  Sum_probs=234.7

Q ss_pred             CCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC-----------C-CCcchHHHHHHHHHhCCCchHHHHHHHHhHHC-
Q 010881           16 TLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-----------Y-RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRS-   82 (498)
Q Consensus        16 ~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-----------~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-   82 (498)
                      ......+||.|..+|...  |+.++|.+.|++..           . ....+|+.+..+|...|++++|...|++..+. 
T Consensus        47 ~~~~a~~yn~Lg~~~~~~--G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLK--GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             ---CCHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            344567899999999999  99999999997642           1 23568999999999999999999999987652 


Q ss_pred             ----C-CCC-CcchHHHHHHHHHc--cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHH---HHhCCChhhHHHHhhccC-
Q 010881           83 ----D-FLP-NNYTFSFILRACAD--TSCLFVGLICHAQVIRLGWESYDFVLNGLLHL---YATCNCMDPARKLFDMSV-  150 (498)
Q Consensus        83 ----~-~~p-~~~~~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~-  150 (498)
                          + ..+ ...++.....++..  .+++++|...|++.++..+. +...+..+..+   +...++.++|.+.+++.. 
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~  203 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR  203 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence                1 111 22345544444444  45789999999999998754 44555555444   445678888998887754 


Q ss_pred             --CCChhhHHHHHHHHHc----cCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC-H
Q 010881          151 --NRDVISWTSLINGYAK----SGQISIARQMFDKMP---EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN-H  220 (498)
Q Consensus       151 --~~~~~~~~~li~~~~~----~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~  220 (498)
                        +.+..++..+...+..    .+++++|.+.+++..   ..+..++..+...|...|++++|...|++..+.  .|+ .
T Consensus       204 l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~  281 (472)
T 4g1t_A          204 LNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNA  281 (472)
T ss_dssp             HCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCH
T ss_pred             cCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChH
Confidence              3355666666655554    467788999988764   346778899999999999999999999999885  444 4


Q ss_pred             HHHHHHHHHHhc-------------------cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881          221 AGIVGALTACAF-------------------LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM  281 (498)
Q Consensus       221 ~~~~~ll~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  281 (498)
                      .++..+...+..                   .+..+.|...++...+.. +.+..++..+...|...|++++|...|++.
T Consensus       282 ~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ka  360 (472)
T 4g1t_A          282 YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKE  360 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHH
Confidence            455555444322                   123567778888877775 667788889999999999999999999987


Q ss_pred             CC--CChh----HHHHHHH-HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHH
Q 010881          282 PN--RDVF----AYTSLIS-GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKK  354 (498)
Q Consensus       282 ~~--~~~~----~~~~li~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  354 (498)
                      .+  ++..    .+..+.. .+...|+.++|+..|.+..+.  .|+            .......         ...+..
T Consensus       361 L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~------------~~~~~~~---------~~~l~~  417 (472)
T 4g1t_A          361 FSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQK------------SREKEKM---------KDKLQK  417 (472)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCC------------CHHHHHH---------HHHHHH
T ss_pred             HhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc------------cHHHHHH---------HHHHHH
Confidence            53  3322    2333332 345679999999999998874  333            2222111         223344


Q ss_pred             HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          355 VVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       355 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      ++++. ...| +..+|..+...|...|++++|++.|+++++.+|..+.+...++
T Consensus       418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            44443 2234 6788999999999999999999999999999988877665443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.69  E-value=2e-15  Score=134.90  Aligned_cols=223  Identities=13%  Similarity=0.021  Sum_probs=183.8

Q ss_pred             hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCC----hhHH
Q 010881          185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI--ELD----IILG  258 (498)
Q Consensus       185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~  258 (498)
                      ...+..+...+...|++++|...|+++.+..  .+...+..+...+...|++++|...+..+.+..-  .++    ..++
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            3467778888888888888888888888776  7777888888888888888888888888776431  111    5778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881          259 TAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY  336 (498)
Q Consensus       259 ~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~  336 (498)
                      ..+..+|...|++++|...|+++.+  ++       ...+...|++++|...++++...  .|+           +...+
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~-----------~~~~~  142 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPE-----------KAEEA  142 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHH-----------HHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--Ccc-----------hHHHH
Confidence            8888899999999999999888764  33       23566678899999999998874  233           57788


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881          337 GCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ  414 (498)
Q Consensus       337 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  414 (498)
                      ..+...+...|++++|...+++. ...| +..+|..+...+...|++++|+..++++++..|+++..+..++.++...|+
T Consensus       143 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~  222 (258)
T 3uq3_A          143 RLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE  222 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence            89999999999999999999988 3334 688899999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHhhhhCC
Q 010881          415 WNGVEKVRRGMEDNE  429 (498)
Q Consensus       415 ~~~a~~~~~~m~~~~  429 (498)
                      +++|...+++..+..
T Consensus       223 ~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          223 YASALETLDAARTKD  237 (258)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999887643

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.69  E-value=1.4e-15  Score=132.26  Aligned_cols=208  Identities=9%  Similarity=-0.044  Sum_probs=132.1

Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      +...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++...+.. +.+...+..+..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~   81 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE   81 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            34455555566666666666666666655432 2233344444444555555555555555554443 333334444444


Q ss_pred             HHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881          264 MYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL  343 (498)
Q Consensus       264 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~  343 (498)
                      +|...+.         ..  ..         .+...|++++|+..|++..+.  .|+           +...+..+..++
T Consensus        82 ~~~~~~~---------~~--~~---------~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~~~~~lg~~~  128 (217)
T 2pl2_A           82 AYVALYR---------QA--ED---------RERGKGYLEQALSVLKDAERV--NPR-----------YAPLHLQRGLVY  128 (217)
T ss_dssp             HHHHHHH---------TC--SS---------HHHHHHHHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHH
T ss_pred             HHHHhhh---------hh--hh---------hcccccCHHHHHHHHHHHHHh--Ccc-----------cHHHHHHHHHHH
Confidence            3332210         00  00         011229999999999999884  454           588999999999


Q ss_pred             hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHH
Q 010881          344 GRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVR  422 (498)
Q Consensus       344 ~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  422 (498)
                      ...|++++|+..|++. .+..+...+..+..+|...|++++|+..|+++++.+|+++.++..++.++...|++++|.+.+
T Consensus       129 ~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~  208 (217)
T 2pl2_A          129 ALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAA  208 (217)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-----------
T ss_pred             HHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999999998 222788999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhh
Q 010881          423 RGME  426 (498)
Q Consensus       423 ~~m~  426 (498)
                      ++..
T Consensus       209 ~~~~  212 (217)
T 2pl2_A          209 ALEH  212 (217)
T ss_dssp             ----
T ss_pred             HHHh
Confidence            7654

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.69  E-value=3e-17  Score=164.98  Aligned_cols=147  Identities=12%  Similarity=0.122  Sum_probs=121.4

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHhhCC-------CCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010881          154 VISWTSLINGYAKSGQISIARQMFDKMP-------EKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGA  226 (498)
Q Consensus       154 ~~~~~~li~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  226 (498)
                      ..+||+||.+|++.|++++|.++|++|.       .||++|||+||++||+.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            4589999999999999999999997653       589999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcC
Q 010881          227 LTACAFLGAL-DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-----DVFAYTSLISGLANHD  300 (498)
Q Consensus       227 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~  300 (498)
                      |.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++...+..+     .+.+...|.+.|.+.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccCC
Confidence            9999999985 789999999999999999999999998777665555554443333321     1334444455555443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.67  E-value=3e-17  Score=164.96  Aligned_cols=147  Identities=15%  Similarity=0.118  Sum_probs=122.6

Q ss_pred             hhHHHHHHHHhhcCCCCChhHHHHHhhhcC-------CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHH
Q 010881           20 PFAVGKIIGFCSASDIGDLSHGYRLFVCLQ-------YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFS   92 (498)
Q Consensus        20 ~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~   92 (498)
                      ..+||+||++|++.  |++++|.++|+.|.       .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus       127 ~~TynaLIdglcK~--G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          127 QQRLLAFFKCCLLT--DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHH--TCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            36899999999999  99999999997753       6899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCc-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC-----ChhhHHHHHHHHHc
Q 010881           93 FILRACADTSCL-FVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR-----DVISWTSLINGYAK  166 (498)
Q Consensus        93 ~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~li~~~~~  166 (498)
                      ++|.++++.|+. +.|.+++++|.+.|+.||..+|++++..+.+.+-++.+.++......+     .+.+...|.+.|.+
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~  284 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK  284 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence            999999999985 789999999999999999999999998777765555555554333221     13344445555554


Q ss_pred             cC
Q 010881          167 SG  168 (498)
Q Consensus       167 ~~  168 (498)
                      .+
T Consensus       285 d~  286 (1134)
T 3spa_A          285 DG  286 (1134)
T ss_dssp             CS
T ss_pred             CC
Confidence            44

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.66  E-value=2.2e-14  Score=129.44  Aligned_cols=244  Identities=9%  Similarity=-0.068  Sum_probs=185.4

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--HHHHHHHHHHH
Q 010881          156 SWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN--HAGIVGALTAC  230 (498)
Q Consensus       156 ~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~  230 (498)
                      .+......+...|++++|+..|++..+  | +...+..+..++...|++++|+..+++..+.+..|+  ...|..+...+
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            344455666677777777777776542  2 455788888888999999999999999887432222  33477888888


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHH
Q 010881          231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIE  307 (498)
Q Consensus       231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~  307 (498)
                      ...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|++..+   .+...|..+...+...+++++|..
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999888875 56778899999999999999999999998875   356677777734445569999999


Q ss_pred             HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhC----CCCCC------HHHHHHHHHH
Q 010881          308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM---LEAAKKVVREM----PIEPD------NYVLGALLNA  374 (498)
Q Consensus       308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~  374 (498)
                      .|+++.+.  .|+           +...+..+..++...|+   +++|...+++.    .-.|+      ..+|..+...
T Consensus       164 ~~~~a~~~--~p~-----------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  230 (272)
T 3u4t_A          164 SFVKVLEL--KPN-----------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY  230 (272)
T ss_dssp             HHHHHHHH--STT-----------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--Ccc-----------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence            99999884  343           47788888888888887   77788887776    22243      2577788889


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC
Q 010881          375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE  413 (498)
Q Consensus       375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  413 (498)
                      |...|++++|.+.++++++.+|+++.+...+.......+
T Consensus       231 ~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          231 YTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence            999999999999999999999999887777766555443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.63  E-value=1.6e-14  Score=130.39  Aligned_cols=237  Identities=8%  Similarity=-0.158  Sum_probs=181.6

Q ss_pred             cCCHHHHHHHHhhCCCC-------ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHH
Q 010881          167 SGQISIARQMFDKMPEK-------NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQG  239 (498)
Q Consensus       167 ~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  239 (498)
                      .|++++|+..|+++.+.       +..++..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence            36677777777766542       45677788888889999999999999888763 33567888888888899999999


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 010881          240 RWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGV  317 (498)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  317 (498)
                      ...++.+.+.. +.+..++..+..+|...|++++|...|+++.+  |+.......+..+...|++++|...+++..... 
T Consensus        97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-  174 (275)
T 1xnf_A           97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-  174 (275)
T ss_dssp             HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence            99999888875 55678888999999999999999999988764  444444445555577799999999998887752 


Q ss_pred             CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010881          318 VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-----NYVLGALLNACRVHGDVDLGKETVESL  391 (498)
Q Consensus       318 ~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~  391 (498)
                       |           ++...+ .++..+...++.++|...+++. ...|+     ..++..+...|...|++++|...++++
T Consensus       175 -~-----------~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  241 (275)
T 1xnf_A          175 -D-----------KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA  241 (275)
T ss_dssp             -C-----------CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -C-----------cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             2           233344 3777788888899999999887 43342     578888999999999999999999999


Q ss_pred             HhcCCCCchHHHHHHHHhHhcCCcchHHHHH
Q 010881          392 VERSLDHEGVHVLLSNIYASTEQWNGVEKVR  422 (498)
Q Consensus       392 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  422 (498)
                      ++.+|++...   ...++...|++++|++.+
T Consensus       242 l~~~p~~~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          242 VANNVHNFVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred             HhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence            9999977543   366778889999888776

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.62  E-value=2.8e-14  Score=138.47  Aligned_cols=341  Identities=11%  Similarity=-0.023  Sum_probs=178.8

Q ss_pred             HHHHhhcCCCCChhHHHHHhhhcCC-CCcchHHHHHHHHHhCCCc---hHHHHHHHHhHHCCCCCCcchHHHHHHHHHcc
Q 010881           26 IIGFCSASDIGDLSHGYRLFVCLQY-RTTFIWNTMIRGFAEKNEP---IKAFALYKQMLRSDFLPNNYTFSFILRACADT  101 (498)
Q Consensus        26 l~~~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~  101 (498)
                      +...+.+.  |++++|.+.|+...+ .++.++..|...|...|++   ++|+..|++..+.    +...+..+...+...
T Consensus         9 la~~~~~~--g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~   82 (452)
T 3e4b_A            9 LANEALKR--GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK   82 (452)
T ss_dssp             HHHHHHHH--HHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred             HHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence            45556666  889999999887653 4566677777777777887   8899998888763    455555666544444


Q ss_pred             C-----CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhh---HHHHhhccC-CCChhhHHHHHHHHHccC----
Q 010881          102 S-----CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP---ARKLFDMSV-NRDVISWTSLINGYAKSG----  168 (498)
Q Consensus       102 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~-~~~~~~~~~li~~~~~~~----  168 (498)
                      +     ++++|...+++..+.|..   ..+..|...|...+..+.   +.+.+.... ..++..+..+...|...+    
T Consensus        83 ~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           83 PGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             --CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred             CCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence            4     678888899888887643   356667777776654433   333333322 224556666666666665    


Q ss_pred             CHHHHHHHHhhCCCCChhHHHHHHHHHHhCC---CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc----CChHHHHH
Q 010881          169 QISIARQMFDKMPEKNAVSWSAMINGYVQVD---LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL----GALDQGRW  241 (498)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----~~~~~a~~  241 (498)
                      +.+.+..+++.....++..+..|...|...|   ++++|+..|++..+.| .++...+..+...|...    +++++|..
T Consensus       160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~  238 (452)
T 3e4b_A          160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQA  238 (452)
T ss_dssp             GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            4455555666666556667777777777777   7777777777777665 33444334444444433    46666666


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHH-H--HhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcC-----ChHHHHHHHHHH
Q 010881          242 IHAYVDRNGIELDIILGTAIIDM-Y--AKCGCIETACSVFDSMPN-RDVFAYTSLISGLANHD-----QSASAIELFMRM  312 (498)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m  312 (498)
                      .|+... .|   +...+..|... |  ...+++++|...|++..+ .+...+..|...|. .|     ++++|..+|++.
T Consensus       239 ~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A  313 (452)
T 3e4b_A          239 LLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA  313 (452)
T ss_dssp             HHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred             HHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence            666655 22   44445555554 2  345566666666665443 24445555555554 33     566666666555


Q ss_pred             HHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 010881          313 QLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREMPIEPDNYVLGALLNACRV----HGDVDLG  384 (498)
Q Consensus       313 ~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A  384 (498)
                      . .|               +...+..|...|..    ..++++|...|++.--.-+......|...|..    ..+.++|
T Consensus       314 a-~g---------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A  377 (452)
T 3e4b_A          314 V-GR---------------EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNA  377 (452)
T ss_dssp             T-TT---------------CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHH
T ss_pred             h-CC---------------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHH
Confidence            4 22               34555555555544    23566666666555101122233334444432    2355666


Q ss_pred             HHHHHHHHhcCCC
Q 010881          385 KETVESLVERSLD  397 (498)
Q Consensus       385 ~~~~~~~~~~~~~  397 (498)
                      ..+|+++.+.++.
T Consensus       378 ~~~~~~A~~~g~~  390 (452)
T 3e4b_A          378 YVFSQLAKAQDTP  390 (452)
T ss_dssp             HHHHHHHHTTCCH
T ss_pred             HHHHHHHHHCCCH
Confidence            6666666555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.62  E-value=6.2e-14  Score=125.14  Aligned_cols=229  Identities=13%  Similarity=0.022  Sum_probs=168.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC--CCC----HHHHHHHHH
Q 010881          157 WTSLINGYAKSGQISIARQMFDKMPE--KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF--RPN----HAGIVGALT  228 (498)
Q Consensus       157 ~~~li~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~----~~~~~~ll~  228 (498)
                      +..+...+...|++++|...|++..+  .+...+..+..++...|++++|...+++..+...  .|+    ...+..+..
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~   87 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGN   87 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHH
Confidence            34444444445555555555443321  4556677777777777888888777777765321  112    466777777


Q ss_pred             HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHH
Q 010881          229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASA  305 (498)
Q Consensus       229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a  305 (498)
                      .+...|++++|...++.+.+..  |+       ...+...|++++|...++.+...   +...+..+...+...|++++|
T Consensus        88 ~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           88 AYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            7778888888888888777653  33       23466677888888888876542   456788888899999999999


Q ss_pred             HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 010881          306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDL  383 (498)
Q Consensus       306 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~  383 (498)
                      ...++++.+.  .|+           +..++..+..++...|++++|...+++. ...| +...|..+...+...|++++
T Consensus       159 ~~~~~~a~~~--~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~  225 (258)
T 3uq3_A          159 VKAYTEMIKR--APE-----------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYAS  225 (258)
T ss_dssp             HHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhc--Ccc-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999875  233           5788999999999999999999999988 3344 68889999999999999999


Q ss_pred             HHHHHHHHHhcC------CCCchHHHHHHH
Q 010881          384 GKETVESLVERS------LDHEGVHVLLSN  407 (498)
Q Consensus       384 A~~~~~~~~~~~------~~~~~~~~~l~~  407 (498)
                      |...++++++..      |.+...+..+..
T Consensus       226 A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~  255 (258)
T 3uq3_A          226 ALETLDAARTKDAEVNNGSSAREIDQLYYK  255 (258)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence            999999999988      777666655544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.61  E-value=4.2e-14  Score=137.23  Aligned_cols=323  Identities=15%  Similarity=0.023  Sum_probs=154.7

Q ss_pred             hHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCh---hHHHHHhhhcCCCCcchHHHHHHHHHhCC-----CchHHHH
Q 010881            3 QIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDL---SHGYRLFVCLQYRTTFIWNTMIRGFAEKN-----EPIKAFA   74 (498)
Q Consensus         3 ~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~A~~   74 (498)
                      +|.+++..+.+.|   ++..+..|..+|...  |+.   ++|...|+.....++..+..+...+...+     ++++|+.
T Consensus        21 ~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~--g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~   95 (452)
T 3e4b_A           21 TAQQNYQQLAELG---YSEAQVGLADIQVGT--RDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAES   95 (452)
T ss_dssp             HHHHHHHHHHHHT---CCTGGGTCC------------------------------CHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence            4555566665555   233334444555444  555   66666666655445555665555444443     5566666


Q ss_pred             HHHHhHHCCCCCCcchHHHHHHHHHccCCcH---HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCCh----hhHHHHhh
Q 010881           75 LYKQMLRSDFLPNNYTFSFILRACADTSCLF---VGLICHAQVIRLGWESYDFVLNGLLHLYATCNCM----DPARKLFD  147 (498)
Q Consensus        75 ~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~  147 (498)
                      .|++..+.|.   ...+..|...|...+..+   .+.+.+......|   +......|...|...+.+    +.+..+++
T Consensus        96 ~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~  169 (452)
T 3e4b_A           96 LLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICK  169 (452)
T ss_dssp             HHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred             HHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence            6666666442   224445555554443322   2333344443333   233444555555555533    33344444


Q ss_pred             ccCCCChhhHHHHHHHHHccC---CHHHHHHHHhhCCC---CChhHHHHHHHHHHhC----CCHhHHHHHHHHHHHcCCC
Q 010881          148 MSVNRDVISWTSLINGYAKSG---QISIARQMFDKMPE---KNAVSWSAMINGYVQV----DLFKEALEHFNYMQLCGFR  217 (498)
Q Consensus       148 ~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~  217 (498)
                      .....++.++..|...|.+.|   +.++|++.|++..+   ++...+..+...|...    +++++|+..|++.. .|  
T Consensus       170 ~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g--  246 (452)
T 3e4b_A          170 AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG--  246 (452)
T ss_dssp             HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG--
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC--
Confidence            445555556666666666666   66666666665532   2233334555555443    56666666666655 22  


Q ss_pred             CCHHHHHHHHHH-H--hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-----CHHHHHHHHhhCCCCChhHH
Q 010881          218 PNHAGIVGALTA-C--AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG-----CIETACSVFDSMPNRDVFAY  289 (498)
Q Consensus       218 p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~~~~~~~~~  289 (498)
                       +...+..+... +  ...+++++|...|+...+.|   +...+..|...|. .|     ++++|...|++....++..+
T Consensus       247 -~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~  321 (452)
T 3e4b_A          247 -YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAVGREVAAD  321 (452)
T ss_dssp             -STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHH
T ss_pred             -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHH
Confidence             22333333333 2  34566666666666666555   4455555555555 33     66666666666653344555


Q ss_pred             HHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC
Q 010881          290 TSLISGLAN----HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREM  359 (498)
Q Consensus       290 ~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~  359 (498)
                      ..|...|..    ..+.++|..+|++..+.|               +......|..+|..    ..+.++|...|+..
T Consensus       322 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---------------~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  384 (452)
T 3e4b_A          322 YYLGQIYRRGYLGKVYPQKALDHLLTAARNG---------------QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA  384 (452)
T ss_dssp             HHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---------------CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---------------hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            555555544    236666666666665544               23445555555543    34566666666554

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.61  E-value=5.3e-13  Score=120.45  Aligned_cols=223  Identities=10%  Similarity=-0.077  Sum_probs=167.1

Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF----LGALDQGRWIHAYVDRNGIELDIILGT  259 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~  259 (498)
                      +..++..+...+...|++++|...|++..+.   -+...+..+...+..    .+++++|...++...+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4556666777777777777777777777762   234556666666666    777777777777777665   566777


Q ss_pred             HHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881          260 AIIDMYAK----CGCIETACSVFDSMPN-RDVFAYTSLISGLAN----HDQSASAIELFMRMQLEGVVPNESMSEIYGIE  330 (498)
Q Consensus       260 ~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~  330 (498)
                      .+...|..    .+++++|...|++..+ .+..++..+...|..    .+++++|+..|++..+.+              
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------  144 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--------------  144 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--------------
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--------------
Confidence            77777777    7888888888776654 356677777778887    888888888888887754              


Q ss_pred             CChHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchH
Q 010881          331 PGVQHYGCLVDLLGR----AGMLEAAKKVVREM-PIEPDNYVLGALLNACRV----HGDVDLGKETVESLVERSLDHEGV  401 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~  401 (498)
                       +...+..+...|..    .+++++|...|++. .. .+...+..+...|..    .+++++|+..++++.+.+|  +..
T Consensus       145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a  220 (273)
T 1ouv_A          145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGG  220 (273)
T ss_dssp             -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHH
T ss_pred             -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHH
Confidence             35677777888877    88888888888877 22 356677778888888    8888899988888888766  557


Q ss_pred             HHHHHHHhHh----cCCcchHHHHHHhhhhCCc
Q 010881          402 HVLLSNIYAS----TEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       402 ~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~  430 (498)
                      +..++.+|..    .+++++|.+.+++..+.+.
T Consensus       221 ~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          221 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence            7888888888    8888889888888877654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.61  E-value=3.9e-13  Score=119.65  Aligned_cols=203  Identities=10%  Similarity=-0.094  Sum_probs=159.5

Q ss_pred             hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 010881          185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM  264 (498)
Q Consensus       185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  264 (498)
                      ...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            4567778888888999999999999888753 3456677778888888888888888888888775 5567788888888


Q ss_pred             HHhcCCHHHHHHHHhhCCC----C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881          265 YAKCGCIETACSVFDSMPN----R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL  339 (498)
Q Consensus       265 ~~~~g~~~~A~~~~~~~~~----~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l  339 (498)
                      |...|++++|...|+++..    | +...+..+...+...|++++|...++++.+..  |+           +...+..+
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~-----------~~~~~~~l  181 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RN-----------QPSVALEM  181 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SC-----------CHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cc-----------cHHHHHHH
Confidence            8888888888888887755    2 34567778888888888888888888887742  32           46778888


Q ss_pred             HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          340 VDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       340 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                      ...+...|++++|...++++ ...| +...+..+...+...|++++|.+.++++++..|+++...
T Consensus       182 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  246 (252)
T 2ho1_A          182 ADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ  246 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            88888888888888888887 4344 666777778888888888888888888888888876543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.60  E-value=3.2e-13  Score=121.86  Aligned_cols=225  Identities=10%  Similarity=-0.094  Sum_probs=177.3

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010881          153 DVISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMINGYVQ----VDLFKEALEHFNYMQLCGFRPNHAGIVGAL  227 (498)
Q Consensus       153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  227 (498)
                      ++.++..+...+...|++++|...|++..++ +..++..+...|..    .+++++|...|++..+.+   +...+..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            3445555666666666666666666665544 45667777778888    888888888888888765   566777777


Q ss_pred             HHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh
Q 010881          228 TACAF----LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK----CGCIETACSVFDSMPN-RDVFAYTSLISGLAN  298 (498)
Q Consensus       228 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~  298 (498)
                      ..+..    .+++++|...++...+.+   +...+..+...|..    .+++++|...|++..+ .+...+..+...|..
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence            77777    888888888888888765   66778888888888    8899999988887664 356677788888887


Q ss_pred             ----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCCHHHHH
Q 010881          299 ----HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREM-PIEPDNYVLG  369 (498)
Q Consensus       299 ----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~  369 (498)
                          .+++++|...|++..+.+               +...+..+..+|..    .+++++|...|++. ...| ...+.
T Consensus       159 ~~~~~~~~~~A~~~~~~a~~~~---------------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~  222 (273)
T 1ouv_A          159 GRGTPKDLKKALASYDKACDLK---------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCF  222 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHH
Confidence                899999999999988764               46788889999999    99999999999987 3333 67788


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHhcCCCCc
Q 010881          370 ALLNACRV----HGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       370 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      .+...|..    .+++++|.+.|+++++.+|++.
T Consensus       223 ~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a  256 (273)
T 1ouv_A          223 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA  256 (273)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence            88888888    9999999999999999988754

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.60  E-value=3.6e-14  Score=125.51  Aligned_cols=211  Identities=10%  Similarity=0.000  Sum_probs=134.7

Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      ....|..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence            34556666777777778888888777777642 3345566666777777777777777777777664 445667777777


Q ss_pred             HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881          264 MYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV  340 (498)
Q Consensus       264 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~  340 (498)
                      .|...|++++|...++++.+   .+...+..+...+...|++++|...++++.+.  .|+           +...+..+.
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~l~  166 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NEN-----------DTEARFQFG  166 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCc-----------cHHHHHHHH
Confidence            77777777777777776542   35566777777777888888888888877764  222           466777777


Q ss_pred             HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          341 DLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       341 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      ..+...|++++|...++++ ...| +..++..+...|...|++++|...++++++..|+++..+..+....
T Consensus       167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~  237 (243)
T 2q7f_A          167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG  237 (243)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence            8888888888888888776 2233 5667777777888888888888888888888888776666554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.60  E-value=1.1e-13  Score=123.16  Aligned_cols=198  Identities=7%  Similarity=-0.053  Sum_probs=174.5

Q ss_pred             HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHH
Q 010881          220 HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGL  296 (498)
Q Consensus       220 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~  296 (498)
                      ...+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+   .+...+..+...|
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            3566777788899999999999999998875 66788899999999999999999999998763   4677899999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010881          297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNA  374 (498)
Q Consensus       297 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  374 (498)
                      ...|++++|..+++++...+..|+           +...+..+..++...|++++|...++++ ...| +...+..+...
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~  184 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPE-----------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADL  184 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTT-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            999999999999999987333333           5788899999999999999999999998 3334 68889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          375 CRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      +...|++++|...++++++..|++...+..++.++...|++++|.++++++.+..
T Consensus       185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999997654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=6.4e-14  Score=131.87  Aligned_cols=228  Identities=9%  Similarity=-0.046  Sum_probs=191.4

Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA-LDQGRWIHAYVDRNGIELDIILGTAII  262 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~  262 (498)
                      +...|+.+...+.+.|++++|+..|++..+.. +-+...|..+...+...|+ +++|...++.+.+.. +.+..+|..+.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g  173 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence            34567788888888999999999999988753 2345677788888888886 999999999998886 66788999999


Q ss_pred             HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881          263 DMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL  339 (498)
Q Consensus       263 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l  339 (498)
                      .+|...|++++|+..|+++.+   .+...|..+..++...|++++|+..|+++++.  .|+           +...|+.+
T Consensus       174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~-----------~~~a~~~l  240 (382)
T 2h6f_A          174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVR-----------NNSVWNQR  240 (382)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT-----------CHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCC-----------CHHHHHHH
Confidence            999999999999999998874   47789999999999999999999999999985  444           68899999


Q ss_pred             HHHHhh-cCCHHHH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          340 VDLLGR-AGMLEAA-----KKVVREM-PIEP-DNYVLGALLNACRVHG--DVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       340 ~~~~~~-~g~~~~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      ..++.. .|..++|     +..+++. .+.| +...|..+...+...|  ++++|++.+.++ +.+|+++..+..++.+|
T Consensus       241 g~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~  319 (382)
T 2h6f_A          241 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIY  319 (382)
T ss_dssp             HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHH
Confidence            999999 6665777     4777776 4556 6788988888898888  689999999998 88899998999999999


Q ss_pred             HhcC---------CcchHHHHHHhh-hh
Q 010881          410 ASTE---------QWNGVEKVRRGM-ED  427 (498)
Q Consensus       410 ~~~g---------~~~~a~~~~~~m-~~  427 (498)
                      .+.|         .+++|.++++++ .+
T Consensus       320 ~~~~~~~~~~~~~~~~~A~~~~~~l~~~  347 (382)
T 2h6f_A          320 EDMLENQCDNKEDILNKALELCEILAKE  347 (382)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHH
Confidence            9875         358899999888 44

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=2.5e-13  Score=118.39  Aligned_cols=199  Identities=8%  Similarity=-0.037  Sum_probs=101.9

Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            34556666667777777777777777766542 2234455555555666666666666666655543 334444455555


Q ss_pred             HHHhc-CCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881          264 MYAKC-GCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL  342 (498)
Q Consensus       264 ~~~~~-g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~  342 (498)
                      .|... |++++|...++                               ++.+.+..|+           +...+..+..+
T Consensus        85 ~~~~~~~~~~~A~~~~~-------------------------------~~~~~~~~~~-----------~~~~~~~l~~~  122 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFD-------------------------------KALADPTYPT-----------PYIANLNKGIC  122 (225)
T ss_dssp             HHHTTTCCHHHHHHHHH-------------------------------HHHTSTTCSC-----------HHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHH-------------------------------HHHcCcCCcc-----------hHHHHHHHHHH
Confidence            55555 55555555544                               4443111111           23444444444


Q ss_pred             HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCchHHHHHHHHhHhcCCcchHH
Q 010881          343 LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSL-DHEGVHVLLSNIYASTEQWNGVE  419 (498)
Q Consensus       343 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~  419 (498)
                      +...|++++|...++++ ...| +...+..+...+...|++++|...++++++..| +++..+..++..+...|+.++|.
T Consensus       123 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  202 (225)
T 2vq2_A          123 SAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY  202 (225)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence            55555555555554444 1122 344444445555555555555555555555555 44444444444445555555555


Q ss_pred             HHHHhhh
Q 010881          420 KVRRGME  426 (498)
Q Consensus       420 ~~~~~m~  426 (498)
                      .+++.+.
T Consensus       203 ~~~~~~~  209 (225)
T 2vq2_A          203 EYEAQLQ  209 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=8.6e-13  Score=114.97  Aligned_cols=208  Identities=13%  Similarity=-0.045  Sum_probs=153.3

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010881          153 DVISWTSLINGYAKSGQISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTA  229 (498)
Q Consensus       153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  229 (498)
                      +...+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|...|+++.+.. +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            466788899999999999999999998753   367789999999999999999999999998863 3466788889999


Q ss_pred             Hhcc-CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 010881          230 CAFL-GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIEL  308 (498)
Q Consensus       230 ~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  308 (498)
                      +... |++++|...++.+.+.+..|+                              +...+..+...+...|++++|...
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~A~~~  135 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPT------------------------------PYIANLNKGICSAKQGQFGLAEAY  135 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSC------------------------------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcc------------------------------hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999 999999999999887221221                              122333444455555556666666


Q ss_pred             HHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHH
Q 010881          309 FMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE--PDNYVLGALLNACRVHGDVDLGK  385 (498)
Q Consensus       309 ~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~A~  385 (498)
                      ++++.+.  .|+           +...+..+..++...|++++|...++++ ...  .+...+..+...+...|+.+.|.
T Consensus       136 ~~~~~~~--~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  202 (225)
T 2vq2_A          136 LKRSLAA--QPQ-----------FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAY  202 (225)
T ss_dssp             HHHHHHH--STT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHh--CCC-----------CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHH
Confidence            6665553  222           3566777777777777777777777776 222  35666666777778888888888


Q ss_pred             HHHHHHHhcCCCCchHHHH
Q 010881          386 ETVESLVERSLDHEGVHVL  404 (498)
Q Consensus       386 ~~~~~~~~~~~~~~~~~~~  404 (498)
                      .+++.+.+..|+++.....
T Consensus       203 ~~~~~~~~~~p~~~~~~~~  221 (225)
T 2vq2_A          203 EYEAQLQANFPYSEELQTV  221 (225)
T ss_dssp             HHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHH
Confidence            8888888888887755443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=1.6e-13  Score=129.11  Aligned_cols=244  Identities=11%  Similarity=0.020  Sum_probs=198.8

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCC-HhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010881          154 VISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDL-FKEALEHFNYMQLCGFRPNHAGIVGALTA  229 (498)
Q Consensus       154 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  229 (498)
                      ..+|..+...+.+.|++++|+..|++...  | +..+|+.+..++...|+ +++|+..|+++.+.. +-+...|..+..+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~  175 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            35677777778888888888888887752  3 57788888888889996 999999999988853 2356678888888


Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHh-cCChHHH
Q 010881          230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLAN-HDQSASA  305 (498)
Q Consensus       230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~-~~~~~~a  305 (498)
                      +...|++++|...++.+.+.. +-+...|..+..++...|++++|+..|+++.+   .+...|+.+..++.. .|..++|
T Consensus       176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHH
Confidence            888899999999999998886 67788899999999999999999999998874   467789999999988 6665777


Q ss_pred             -----HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHh
Q 010881          306 -----IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG--MLEAAKKVVREMPIEP-DNYVLGALLNACRV  377 (498)
Q Consensus       306 -----~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~  377 (498)
                           +..|++.+..  .|+           +...|..+..++...|  ++++|.+.+.++...| +...+..+...|..
T Consensus       255 ~~~~el~~~~~Al~l--~P~-----------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~  321 (382)
T 2h6f_A          255 VLEREVQYTLEMIKL--VPH-----------NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  321 (382)
T ss_dssp             HHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Confidence                 5888888874  455           5889999999999988  6899999998884445 67788888888888


Q ss_pred             cC---------CHHHHHHHHHHH-HhcCCCCchHHHHHHHHhHhc
Q 010881          378 HG---------DVDLGKETVESL-VERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       378 ~g---------~~~~A~~~~~~~-~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      .|         .+++|+++|+++ ++.+|.....|..++..+...
T Consensus       322 ~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          322 MLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence            64         358999999999 899999988888887766544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.56  E-value=1.2e-13  Score=132.15  Aligned_cols=295  Identities=13%  Similarity=-0.021  Sum_probs=181.2

Q ss_pred             HHHHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHcc
Q 010881           91 FSFILRACADTSCLFVGLICHAQVIRLGWESY---DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKS  167 (498)
Q Consensus        91 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~  167 (498)
                      +......+...|++++|...++++++..+...   ..++..+...+...|++++|...+++.                  
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------------------   73 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHD------------------   73 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH------------------
Confidence            34444555666666666666666666543211   234555666666666666666665432                  


Q ss_pred             CCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC-----
Q 010881          168 GQISIARQMFDKMPEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPN----HAGIVGALTACAFLGA-----  235 (498)
Q Consensus       168 ~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~-----  235 (498)
                            ..+......+  ...++..+...+...|++++|...+++..+... .++    ..++..+...+...|+     
T Consensus        74 ------l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  147 (406)
T 3sf4_A           74 ------LTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCP  147 (406)
T ss_dssp             ------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred             ------HHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCccccc
Confidence                  1111111111  123344455555555555555555555443200 001    2244445555555555     


Q ss_pred             ---------------hHHHHHHHHHHHHh----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----h
Q 010881          236 ---------------LDQGRWIHAYVDRN----GI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----V  286 (498)
Q Consensus       236 ---------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~  286 (498)
                                     +++|...+....+.    +. +....++..+...|...|++++|...+++..+     ++    .
T Consensus       148 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  227 (406)
T 3sf4_A          148 GPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER  227 (406)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence                           66666555554332    11 11234566777788888888888888776653     11    2


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM----PI  361 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~  361 (498)
                      .++..+...|...|++++|...+++.....  |+      .+..+ ...++..+...|...|++++|...+++.    +-
T Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  299 (406)
T 3sf4_A          228 RAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQ------LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  299 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hh------CcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            378888888999999999999998887531  10      00011 2567888999999999999999999887    11


Q ss_pred             CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCchHHHHHHHHhHhcCCcch
Q 010881          362 EPD----NYVLGALLNACRVHGDVDLGKETVESLVERSL------DHEGVHVLLSNIYASTEQWNG  417 (498)
Q Consensus       362 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~  417 (498)
                      .++    ..++..+...|...|++++|...++++++..+      ....++..++.++...|+...
T Consensus       300 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          300 LNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             cCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence            122    56788888999999999999999999988632      234567788888988887754

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.56  E-value=1.6e-13  Score=123.78  Aligned_cols=230  Identities=11%  Similarity=-0.058  Sum_probs=187.5

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCC--hhHHHHHHH
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELD--IILGTAIID  263 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~  263 (498)
                      ..+......+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++.+.+....++  ...+..+..
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            445567788999999999999999999863 22344778888899999999999999999988432222  234888999


Q ss_pred             HHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881          264 MYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV  340 (498)
Q Consensus       264 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~  340 (498)
                      +|...|++++|...|+++.+   .+..+|..+...|...|++++|...|++..+.  .|+           +...+..+.
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~-----------~~~~~~~l~  149 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTT-----------DPKVFYELG  149 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCC-----------CHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCC-----------cHHHHHHHH
Confidence            99999999999999998764   46678999999999999999999999998764  444           577888888


Q ss_pred             HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----chHHHHHHH
Q 010881          341 DLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGD---VDLGKETVESLVERS---LDH-----EGVHVLLSN  407 (498)
Q Consensus       341 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~-----~~~~~~l~~  407 (498)
                      ..+...+++++|...|+++ ...| +...+..+...+...|+   +++|...++++++..   |+.     ..++..++.
T Consensus       150 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  229 (272)
T 3u4t_A          150 QAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY  229 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            4444556999999999998 4445 57788888888888888   888999999999865   442     146888999


Q ss_pred             HhHhcCCcchHHHHHHhhhhCC
Q 010881          408 IYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       408 ~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      +|...|++++|.+.+++..+..
T Consensus       230 ~~~~~~~~~~A~~~~~~al~~~  251 (272)
T 3u4t_A          230 YYTINRDKVKADAAWKNILALD  251 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcC
Confidence            9999999999999999997644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.56  E-value=1.9e-13  Score=118.68  Aligned_cols=194  Identities=14%  Similarity=0.032  Sum_probs=132.3

Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010881          151 NRDVISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGAL  227 (498)
Q Consensus       151 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll  227 (498)
                      +++...+..+...+.+.|++++|...|++..+  | +...+..+..++.+.|++++|+..|++..+.. +-+...+..+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            35677888999999999999999999998754  3 67889999999999999999999999999863 33456777788


Q ss_pred             HHHhcc-----------CChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHH
Q 010881          228 TACAFL-----------GALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLIS  294 (498)
Q Consensus       228 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~  294 (498)
                      ..+...           |++++|...++...+.. +.+...+..+..+|...|++++|...|++..+  .+...+..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~  159 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHH
Confidence            888877           77777777777777664 44566666677777777777777776665432  45556666666


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                      .|...|++++|...|++..+.  .|+           +...+..+..++...|++++|...+++.
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQ--APK-----------DLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHTC--------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            666677777777777666653  233           4566666666666666666666666543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=9.8e-14  Score=122.71  Aligned_cols=198  Identities=12%  Similarity=0.039  Sum_probs=158.3

Q ss_pred             CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHH
Q 010881          218 PNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLIS  294 (498)
Q Consensus       218 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~  294 (498)
                      .....+..+...+...|++++|...++.+.+.. +.+..++..+..+|...|++++|...|+++.+   .+..++..+..
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~   99 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGN   99 (243)
T ss_dssp             ---------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            345567777788889999999999999998765 66788899999999999999999999998763   46778999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010881          295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALL  372 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  372 (498)
                      .+...|++++|...++++.+..  |+           +...+..+...+...|++++|...++++ ...| +...+..+.
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~--~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  166 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG--ME-----------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG  166 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT--CC-----------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC--CC-----------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHH
Confidence            9999999999999999998852  33           5788999999999999999999999998 3334 788899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          373 NACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       373 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ..+...|++++|...++++++..|++..++..++.++...|++++|...++++.+..
T Consensus       167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999999999999999987643

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.55  E-value=2.9e-13  Score=122.10  Aligned_cols=243  Identities=12%  Similarity=-0.078  Sum_probs=161.6

Q ss_pred             hCCCchHHHHHHHHhHHCCCC--C-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhh
Q 010881           65 EKNEPIKAFALYKQMLRSDFL--P-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDP  141 (498)
Q Consensus        65 ~~~~~~~A~~~~~~m~~~~~~--p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  141 (498)
                      ..|++++|+..|+++.+....  | +..++..+...+...|++++|...++++++..+. +..++..+..++...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence            456677777777777664211  1 3445556666666667777777777666665432 44555555555555555555


Q ss_pred             HHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH
Q 010881          142 ARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA  221 (498)
Q Consensus       142 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  221 (498)
                      |.+.|++...                        .    ...+..++..+...+...|++++|...|+++.+.  .|+..
T Consensus        96 A~~~~~~al~------------------------~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~  145 (275)
T 1xnf_A           96 AYEAFDSVLE------------------------L----DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDP  145 (275)
T ss_dssp             HHHHHHHHHH------------------------H----CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH
T ss_pred             HHHHHHHHHh------------------------c----CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCh
Confidence            5555443211                        0    1225677888888888889999999999888875  45555


Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-------hhHHHHHHH
Q 010881          222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD-------VFAYTSLIS  294 (498)
Q Consensus       222 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~  294 (498)
                      .....+..+...|++++|...+....... +++...+. ++..+...++.++|...++.....+       ..++..+..
T Consensus       146 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~  223 (275)
T 1xnf_A          146 FRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGK  223 (275)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHH
Confidence            55555556677789999999998777764 44555444 6777778888899999998877632       467888999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHH
Q 010881          295 GLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVV  356 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  356 (498)
                      .|...|++++|...|++....  .|+           +   +.....++...|++++|.+.+
T Consensus       224 ~~~~~g~~~~A~~~~~~al~~--~p~-----------~---~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          224 YYLSLGDLDSATALFKLAVAN--NVH-----------N---FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTT--CCT-----------T---CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHcCCHHHHHHHHHHHHhC--Cch-----------h---HHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999999999874  233           2   223355677778888887665

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.54  E-value=1.7e-13  Score=133.76  Aligned_cols=211  Identities=6%  Similarity=-0.052  Sum_probs=175.0

Q ss_pred             HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 010881          201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGAL-DQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD  279 (498)
Q Consensus       201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  279 (498)
                      +++++..+++.... .+.+...+..+...+...|++ ++|...++.+.+.. +.+..++..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            55666666655443 233556677777777778888 88888888877765 5567788888888889999999999888


Q ss_pred             hCCC--CChhHHHHHHHHHHhc---------CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc--
Q 010881          280 SMPN--RDVFAYTSLISGLANH---------DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA--  346 (498)
Q Consensus       280 ~~~~--~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~--  346 (498)
                      +..+  |+...+..+...+...         |++++|+..|++..+.  .|+           +...|..+..+|...  
T Consensus       162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~~~  228 (474)
T 4abn_A          162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL-----------DGRSWYILGNAYLSLYF  228 (474)
T ss_dssp             HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHHHH
Confidence            7764  6667788888888888         9999999999999885  344           588999999999998  


Q ss_pred             ------CCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881          347 ------GMLEAAKKVVREM-PIEP----DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW  415 (498)
Q Consensus       347 ------g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  415 (498)
                            |++++|...|++. ...|    +...|..+..+|...|++++|.+.|+++++.+|+++.++..++.++...|++
T Consensus       229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~  308 (474)
T 4abn_A          229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL  308 (474)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence                  9999999999998 4455    7889999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHhhh
Q 010881          416 NGVEKVRRGME  426 (498)
Q Consensus       416 ~~a~~~~~~m~  426 (498)
                      ++|++.+.++.
T Consensus       309 ~eAi~~~~~~~  319 (474)
T 4abn_A          309 TSLLESKGKTK  319 (474)
T ss_dssp             HHHHHHTTTCC
T ss_pred             HHHHHHhcccc
Confidence            99998765553

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.52  E-value=8.8e-14  Score=133.61  Aligned_cols=198  Identities=11%  Similarity=-0.041  Sum_probs=133.9

Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCChhHHHHHHHHHHhcCC-----------------HHHHHHHHhh
Q 010881          223 IVGALTACAFLGALDQGRWIHAYVDRN----G-IELDIILGTAIIDMYAKCGC-----------------IETACSVFDS  280 (498)
Q Consensus       223 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~  280 (498)
                      +..+...+...|++++|...+..+.+.    + .+....++..+...|...|+                 +++|...+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            334444444455555555554443332    1 01123355566666666666                 6666666655


Q ss_pred             CCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC-CCChHHHHHHHHHHhhcCCHH
Q 010881          281 MPN-----R----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI-EPGVQHYGCLVDLLGRAGMLE  350 (498)
Q Consensus       281 ~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~  350 (498)
                      ..+     .    ...++..+...|...|++++|...+++..+..  |+      .+. .....++..+..+|...|+++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~------~~~~~~~~~~~~~la~~~~~~g~~~  280 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA--RE------FGDRAAERRANSNLGNSHIFLGQFE  280 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH------HTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH--Hh------cCCcHHHHHHHHHHHHHHHHCcCHH
Confidence            432     1    23467778888888999999999888877631  10      000 001347888999999999999


Q ss_pred             HHHHHHHhC-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHHHHHHHhHhcCCcc
Q 010881          351 AAKKVVREM-PI---EP----DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH------EGVHVLLSNIYASTEQWN  416 (498)
Q Consensus       351 ~A~~~~~~~-~~---~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~  416 (498)
                      +|...+++. ..   ..    ...++..+...|...|++++|...++++++..+..      ..++..++.+|...|+++
T Consensus       281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  360 (411)
T 4a1s_A          281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE  360 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence            999999877 11   11    25677888889999999999999999998864332      346888999999999999


Q ss_pred             hHHHHHHhhhhC
Q 010881          417 GVEKVRRGMEDN  428 (498)
Q Consensus       417 ~a~~~~~~m~~~  428 (498)
                      +|...+++..+.
T Consensus       361 ~A~~~~~~al~~  372 (411)
T 4a1s_A          361 RALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=7.7e-13  Score=111.58  Aligned_cols=163  Identities=13%  Similarity=0.020  Sum_probs=131.9

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881          254 DIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE  330 (498)
Q Consensus       254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~  330 (498)
                      ++.+|..+..+|...|++++|...|++..+   .+..+|..+...|...|++++|...+.+....  .|+          
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~----------   71 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTT----------   71 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCC----------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cch----------
Confidence            556777788888888888888888877653   35667888888888888888888888888764  232          


Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                       +...+..+...+...++++.|...+.+. ...| +...+..+...+...|++++|++.|+++++.+|.++.++..++.+
T Consensus        72 -~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~  150 (184)
T 3vtx_A           72 -SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLA  150 (184)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHH
Confidence             4677778888888889999998888887 3344 677888888889999999999999999999999998889999999


Q ss_pred             hHhcCCcchHHHHHHhhhhCC
Q 010881          409 YASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       409 ~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      |.+.|++++|++.|++..+..
T Consensus       151 ~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          151 YEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHhCC
Confidence            999999999999998887654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.49  E-value=2.4e-13  Score=126.25  Aligned_cols=235  Identities=13%  Similarity=0.004  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCC----hh
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLC----GFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGI-ELD----II  256 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~  256 (498)
                      .+..+...+...|++++|...+++..+.    +..| ....+..+...+...|++++|...+....+..- .++    ..
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  124 (338)
T 3ro2_A           45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR  124 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence            3445555555555555555555554321    1111 123444455555555666666665555443210 011    23


Q ss_pred             HHHHHHHHHHhcCC--------------------HHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhcCChHHHHH
Q 010881          257 LGTAIIDMYAKCGC--------------------IETACSVFDSMPN-----R----DVFAYTSLISGLANHDQSASAIE  307 (498)
Q Consensus       257 ~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~  307 (498)
                      ++..+...|...|+                    +++|...+++...     +    ...++..+...+...|++++|..
T Consensus       125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  204 (338)
T 3ro2_A          125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI  204 (338)
T ss_dssp             HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence            55666666667777                    7777666665432     1    23467777888888999999999


Q ss_pred             HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcC
Q 010881          308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEPD----NYVLGALLNACRVHG  379 (498)
Q Consensus       308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g  379 (498)
                      .+++..+......       .......++..+...+...|++++|...+++.    +-.++    ..++..+...+...|
T Consensus       205 ~~~~a~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  277 (338)
T 3ro2_A          205 AHEQRLLIAKEFG-------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQ  277 (338)
T ss_dssp             HHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhc
Confidence            8888765310000       00112447888899999999999999999876    11122    557778888999999


Q ss_pred             CHHHHHHHHHHHHhcCCCC------chHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          380 DVDLGKETVESLVERSLDH------EGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       380 ~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ++++|...++++++..+..      ..++..++.+|...|++++|...+++..+.
T Consensus       278 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          278 DYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999999998865432      346778999999999999999999988764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.48  E-value=4e-13  Score=128.54  Aligned_cols=265  Identities=13%  Similarity=0.019  Sum_probs=194.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHhhCCC--C-C----hhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCCC-HHHHH
Q 010881          157 WTSLINGYAKSGQISIARQMFDKMPE--K-N----AVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRPN-HAGIV  224 (498)
Q Consensus       157 ~~~li~~~~~~~~~~~A~~~~~~~~~--~-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~  224 (498)
                      +......+...|++++|...|++..+  | +    ...+..+...+...|++++|...+++....    +..|. ..++.
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   91 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   91 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            33444455555666666665555431  2 2    346778888899999999999998886542    22222 44677


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCC-CCC----hhHHHHHHHHHHhcCC--------------------HHHHHHHHh
Q 010881          225 GALTACAFLGALDQGRWIHAYVDRNGI-ELD----IILGTAIIDMYAKCGC--------------------IETACSVFD  279 (498)
Q Consensus       225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~  279 (498)
                      .+...+...|++++|...+..+.+..- .++    ..++..+...|...|+                    +++|...++
T Consensus        92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  171 (406)
T 3sf4_A           92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE  171 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            788888999999999999988765420 011    3477888899999999                    999998887


Q ss_pred             hCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHH
Q 010881          280 SMPN-----R----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLE  350 (498)
Q Consensus       280 ~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  350 (498)
                      +...     .    ...++..+...|...|++++|...+++..+......       .......++..+...|...|+++
T Consensus       172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------DKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC-------CcHHHHHHHHHHHHHHHHcCChH
Confidence            6542     1    234788888999999999999999999876310000       00112458889999999999999


Q ss_pred             HHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHHHHHHHhHhcCCcc
Q 010881          351 AAKKVVREM----PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDH------EGVHVLLSNIYASTEQWN  416 (498)
Q Consensus       351 ~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~  416 (498)
                      +|...+++.    +-.++    ..++..+...|...|++++|...++++++..+..      ..++..++.+|...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999887    11122    5678888899999999999999999999865432      456788999999999999


Q ss_pred             hHHHHHHhhhhC
Q 010881          417 GVEKVRRGMEDN  428 (498)
Q Consensus       417 ~a~~~~~~m~~~  428 (498)
                      +|.+.+++..+.
T Consensus       325 ~A~~~~~~al~~  336 (406)
T 3sf4_A          325 QAMHFAEKHLEI  336 (406)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999987653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.48  E-value=9.8e-13  Score=126.24  Aligned_cols=274  Identities=14%  Similarity=-0.005  Sum_probs=172.3

Q ss_pred             HHHHHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCC
Q 010881           93 FILRACADTSCLFVGLICHAQVIRLGWESY---DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ  169 (498)
Q Consensus        93 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~  169 (498)
                      .+...+...|++++|...++++++..+...   ..++..+...|...|++++|.+.+++.                    
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a--------------------  112 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD--------------------  112 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--------------------
Confidence            344455666667777776666666543311   134555666666666666666665432                    


Q ss_pred             HHHHHHHHhhCCCC--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCC-------
Q 010881          170 ISIARQMFDKMPEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRP-NHAGIVGALTACAFLGA-------  235 (498)
Q Consensus       170 ~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~-------  235 (498)
                          .++.+....+  ...++..+...|...|++++|...|++..+.    +-.| ...++..+...+...|+       
T Consensus       113 ----l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~  188 (411)
T 4a1s_A          113 ----LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNP  188 (411)
T ss_dssp             ----HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             ----HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccc
Confidence                1222221111  2334555555666666666666666555432    1111 12345555556666666       


Q ss_pred             ----------hHHHHHHHHHHHHh----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHH
Q 010881          236 ----------LDQGRWIHAYVDRN----GI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTS  291 (498)
Q Consensus       236 ----------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~  291 (498)
                                +++|...+.+..+.    +. +....++..+...|...|++++|...|++..+     .+    ..++..
T Consensus       189 ~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  268 (411)
T 4a1s_A          189 GKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSN  268 (411)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence                      66666666554332    11 11234667778888888888888888887654     12    237788


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-
Q 010881          292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEP-  363 (498)
Q Consensus       292 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-  363 (498)
                      +...|...|++++|...+++.........       .......++..+..+|...|++++|...+++.       +..+ 
T Consensus       269 la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  341 (411)
T 4a1s_A          269 LGNSHIFLGQFEDAAEHYKRTLALAVELG-------EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG  341 (411)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence            88899999999999999998876411000       00112577888999999999999999999987       1111 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      ...++..+...|...|++++|...+++++++.+.
T Consensus       342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          342 EARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence            2457788889999999999999999999887654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.47  E-value=9.9e-11  Score=117.56  Aligned_cols=403  Identities=12%  Similarity=0.023  Sum_probs=265.3

Q ss_pred             HHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcC---CCCcchHHHHHHHHHhCCC---chHHHHHHHHhHHC
Q 010881            9 SHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQ---YRTTFIWNTMIRGFAEKNE---PIKAFALYKQMLRS   82 (498)
Q Consensus         9 ~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~---~~~A~~~~~~m~~~   82 (498)
                      ...+... +.|...|..++..+.+.  ++++.|+.+|+.+.   ..+...|...+..-.+.++   ++.+..+|++....
T Consensus        56 E~~l~~n-p~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~  132 (679)
T 4e6h_A           56 NDMIEEQ-PTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSK  132 (679)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCS
T ss_pred             HHHHHHC-cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHh
Confidence            3444444 45899999999999998  99999999999876   3456678888888888888   99999999999874


Q ss_pred             C-CCCCcchHHHHHHHHHccCCc--------HHHHHHHHHHHHh-CC-CCc-hhHHHHHHHHHHh---------CCChhh
Q 010881           83 D-FLPNNYTFSFILRACADTSCL--------FVGLICHAQVIRL-GW-ESY-DFVLNGLLHLYAT---------CNCMDP  141 (498)
Q Consensus        83 ~-~~p~~~~~~~ll~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~---------~g~~~~  141 (498)
                      . ..|++..|...+....+.++.        +...++|+.++.. |. .++ ...|...+.....         .++++.
T Consensus       133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~  212 (679)
T 4e6h_A          133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQY  212 (679)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHH
Confidence            3 237888888777766555544        3345777776653 55 443 4677777766543         345678


Q ss_pred             HHHHhhccCCCC---h-hhHH---HHHHHH----------HccCCHHHHHHHHhh-------CCC--------------C
Q 010881          142 ARKLFDMSVNRD---V-ISWT---SLINGY----------AKSGQISIARQMFDK-------MPE--------------K  183 (498)
Q Consensus       142 a~~~~~~~~~~~---~-~~~~---~li~~~----------~~~~~~~~A~~~~~~-------~~~--------------~  183 (498)
                      +..+|++...-.   . ..|.   .+...+          -...+++.|...+.+       +..              |
T Consensus       213 ~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p  292 (679)
T 4e6h_A          213 IRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLP  292 (679)
T ss_dssp             HHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSC
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCC
Confidence            889998876421   1 2222   221111          001223344444433       111              0


Q ss_pred             --C------hhHHHHHHHHHHhCC-------CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHH
Q 010881          184 --N------AVSWSAMINGYVQVD-------LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR-WIHAYVD  247 (498)
Q Consensus       184 --~------~~~~~~li~~~~~~g-------~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~  247 (498)
                        +      ...|...+..--..+       ..+.+..+|++.+.. .+-+...|.....-+...|+.+.|. .+++...
T Consensus       293 ~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi  371 (679)
T 4e6h_A          293 KPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQ  371 (679)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence              0      123444444333222       123455678777765 2335566666777777778888886 8888887


Q ss_pred             HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------------CC------------hhHHHHHHHHHHhcCCh
Q 010881          248 RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-------------RD------------VFAYTSLISGLANHDQS  302 (498)
Q Consensus       248 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~------------~~~~~~li~~~~~~~~~  302 (498)
                      .. ++.+...+...+....+.|+++.|..+|+++..             |+            ...|...+....+.|..
T Consensus       372 ~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l  450 (679)
T 4e6h_A          372 QC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGL  450 (679)
T ss_dssp             HH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             Hh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCH
Confidence            65 366777778888888888999999988887753             21            23577777777778888


Q ss_pred             HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc-CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 010881          303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA-GMLEAAKKVVREM--PIEPDNYVLGALLNACRVHG  379 (498)
Q Consensus       303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g  379 (498)
                      +.|..+|.+..+.  .|          .+....|...+..-.+. ++.+.|..+|+..  ...-+...|...+......|
T Consensus       451 ~~AR~vf~~A~~~--~~----------~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~  518 (679)
T 4e6h_A          451 AASRKIFGKCRRL--KK----------LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN  518 (679)
T ss_dssp             HHHHHHHHHHHHT--GG----------GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh--cC----------CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence            9999999988774  01          11233444333333343 4588888888877  22235666677777777888


Q ss_pred             CHHHHHHHHHHHHhcCCC---CchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          380 DVDLGKETVESLVERSLD---HEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       380 ~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +.+.|..+|++++...|+   ....|..++..-.+.|+.+.+.++.+++.+.
T Consensus       519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            899999999998887763   3455777777777888888888888888754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.46  E-value=2.3e-12  Score=119.55  Aligned_cols=271  Identities=13%  Similarity=-0.013  Sum_probs=154.8

Q ss_pred             HHHHccCCcHHHHHHHHHHHHhCCCCc---hhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHH
Q 010881           96 RACADTSCLFVGLICHAQVIRLGWESY---DFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISI  172 (498)
Q Consensus        96 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  172 (498)
                      ..+...|++++|...++++++..+...   ...+..+...+...|++++|.+.+++..                      
T Consensus        13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al----------------------   70 (338)
T 3ro2_A           13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL----------------------   70 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------------
T ss_pred             HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------------------
Confidence            344555555555555555555532211   2344455555556666666655554321                      


Q ss_pred             HHHHHhhCCCC--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCC----------
Q 010881          173 ARQMFDKMPEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPN----HAGIVGALTACAFLGA----------  235 (498)
Q Consensus       173 A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~----------  235 (498)
                        .+......+  ...++..+...+...|++++|...+++..+... .++    ..++..+...+...|+          
T Consensus        71 --~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  148 (338)
T 3ro2_A           71 --TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDT  148 (338)
T ss_dssp             --HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC--
T ss_pred             --HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhh
Confidence              111111000  122344444455555555555555554432110 011    1234444444555555          


Q ss_pred             ----------hHHHHHHHHHHHHh----CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHH
Q 010881          236 ----------LDQGRWIHAYVDRN----GI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTS  291 (498)
Q Consensus       236 ----------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~  291 (498)
                                +++|...+....+.    +. +....++..+...|...|++++|...+++..+     ++    ..++..
T Consensus       149 ~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  228 (338)
T 3ro2_A          149 GEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN  228 (338)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence                      55555555444321    11 11134566677777788888888887776653     11    236777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-
Q 010881          292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEP-  363 (498)
Q Consensus       292 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-  363 (498)
                      +...+...|++++|...+++........+       .......++..+...+...|++++|...+++.       +..+ 
T Consensus       229 l~~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  301 (338)
T 3ro2_A          229 LGNAYIFLGEFETASEYYKKTLLLARQLK-------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIG  301 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhhc-------chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHH
Confidence            88888889999999999888765310000       00012567888899999999999999999877       1111 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      ...++..+...|...|++++|...++++++..+.
T Consensus       302 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  335 (338)
T 3ro2_A          302 EGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  335 (338)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence            2457778888999999999999999999987654

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.45  E-value=2.8e-12  Score=108.07  Aligned_cols=165  Identities=15%  Similarity=0.008  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881          221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLA  297 (498)
Q Consensus       221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  297 (498)
                      ..|..+...+...|++++|...|+...+.. +-+..++..+..+|.+.|++++|...+.....   .+...+..+...+.
T Consensus         6 ~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            6 TIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            344444444555555555555555554443 44556666666777777777777776666542   34556666677777


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010881          298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNAC  375 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  375 (498)
                      ..++++.|...+.+....  .|+           +...+..+..+|.+.|++++|++.|++. ...| +..+|..+..+|
T Consensus        85 ~~~~~~~a~~~~~~a~~~--~~~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  151 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIAL--NTV-----------YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY  151 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh--Ccc-----------chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            788888888888887764  333           5778888888899999999999998887 4445 678888899999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          376 RVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       376 ~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      ...|++++|++.|+++++.+|+++
T Consensus       152 ~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          152 EGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HHCCCHHHHHHHHHHHHhCCccCH
Confidence            999999999999999999888653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.44  E-value=1.6e-12  Score=131.97  Aligned_cols=162  Identities=12%  Similarity=0.107  Sum_probs=140.1

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC
Q 010881          253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI  329 (498)
Q Consensus       253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~  329 (498)
                      -+..+++.|..+|.+.|++++|++.|++..+   .+..+|..+...|.+.|++++|+..|++.++.  .|+         
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~---------   75 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPT---------   75 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT---------
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC---------
Confidence            3466788888888888888888888887764   35678888899999999999999999998874  455         


Q ss_pred             CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881          330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN  407 (498)
Q Consensus       330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  407 (498)
                        +...|..+..+|...|++++|++.|++. .+.| +...|..+...|...|++++|++.|+++++++|++..++..++.
T Consensus        76 --~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~  153 (723)
T 4gyw_A           76 --FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAH  153 (723)
T ss_dssp             --CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhh
Confidence              5889999999999999999999999988 5556 68889999999999999999999999999999999999999999


Q ss_pred             HhHhcCCcchHHHHHHhhhh
Q 010881          408 IYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       408 ~~~~~g~~~~a~~~~~~m~~  427 (498)
                      +|...|++++|.+.+++..+
T Consensus       154 ~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          154 CLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHH
Confidence            99999999999998888764

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.43  E-value=3.9e-11  Score=113.98  Aligned_cols=202  Identities=7%  Similarity=-0.184  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CC-----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-C----C
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGF-RP-----NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-L----D  254 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~  254 (498)
                      .++..+...|...|++++|...+++..+.-. .+     ...++..+...+...|++++|...+....+..-. +    .
T Consensus       144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  223 (383)
T 3ulq_A          144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM  223 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            4566667777777777777777776654210 01     1235666667777777777777777766543100 1    1


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881          255 IILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE  325 (498)
Q Consensus       255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  325 (498)
                      ..++..+..+|...|++++|...|++..+     .+    ..++..+...|...|++++|...+++..+....       
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-------  296 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQK-------  296 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-------
Confidence            24677788888889999888888877654     22    346788888999999999999999888763100       


Q ss_pred             hhCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          326 IYGIEPGVQHYGCLVDLLGRAGM---LEAAKKVVREMPIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       326 ~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                       .+-+.....+..+...+...|+   +++|..++++.+..| ....+..+...|...|++++|...++++++..
T Consensus       297 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          297 -AGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             -HTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence             0111123335678888888888   888888888885444 34466677888888899999999888887744

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.43  E-value=2.4e-13  Score=125.02  Aligned_cols=231  Identities=8%  Similarity=-0.047  Sum_probs=140.7

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLC-------GFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRN------GI-  251 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-  251 (498)
                      .++..+...+...|++++|..+|+++.+.       ........+..+...+...|++++|...++.+.+.      +. 
T Consensus        28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  107 (311)
T 3nf1_A           28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH  107 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34455555555555555555555555442       11222334445555555566666666655555443      11 


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHc-----
Q 010881          252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPN-----------RDVFAYTSLISGLANHDQSASAIELFMRMQLE-----  315 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----  315 (498)
                      +....++..+...|...|++++|...|+++.+           ....++..+...+...|++++|..+++++.+.     
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~  187 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL  187 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            22344566667777777777777777665542           12346777888888899999999999888764     


Q ss_pred             -CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---------CCCC-------HHHHHHHHHHHHh
Q 010881          316 -GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P---------IEPD-------NYVLGALLNACRV  377 (498)
Q Consensus       316 -~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---------~~p~-------~~~~~~l~~~~~~  377 (498)
                       +..|.           ...++..+..+|...|++++|...++++ .         ..+.       ...+..+...+..
T Consensus       188 ~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (311)
T 3nf1_A          188 GPDDPN-----------VAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKD  256 (311)
T ss_dssp             CTTCHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC------
T ss_pred             CCCCHH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhh
Confidence             11111           4678889999999999999999999877 1         1121       1122233334555


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .+.+.+|...++.+....|....++..++.+|.+.|++++|.+++++..+
T Consensus       257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          257 GTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66777788888888888888888899999999999999999999988765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.41  E-value=4e-12  Score=120.79  Aligned_cols=227  Identities=11%  Similarity=-0.028  Sum_probs=175.3

Q ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-C-----ChhHH
Q 010881          190 AMINGYVQVDLFKEALEHFNYMQLC----GFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIE-L-----DIILG  258 (498)
Q Consensus       190 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-----~~~~~  258 (498)
                      .....+...|++++|...|++..+.    +-.+ ...++..+...+...|+++.|...+....+..-. +     ...++
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  187 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCH  187 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence            3566788899999999999998763    1122 2356788888899999999999999988764211 1     23577


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCCchhhh
Q 010881          259 TAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSASAIELFMRMQLE----GVVPNESMSE  325 (498)
Q Consensus       259 ~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~  325 (498)
                      +.+..+|...|++++|...|++..+     ++    ..++..+...|...|++++|...+++..+.    +..|+     
T Consensus       188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~-----  262 (383)
T 3ulq_A          188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPS-----  262 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGG-----
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchh-----
Confidence            8889999999999999999988763     12    247888999999999999999999998773    11122     


Q ss_pred             hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-----CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC
Q 010881          326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI-----EP-DNYVLGALLNACRVHGD---VDLGKETVESLVERS  395 (498)
Q Consensus       326 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~  395 (498)
                            ...++..+..+|.+.|++++|...+++. .+     .| ....+..+...+...|+   +++|+.++++. ...
T Consensus       263 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~  335 (383)
T 3ulq_A          263 ------LPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLY  335 (383)
T ss_dssp             ------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCH
T ss_pred             ------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCH
Confidence                  4778999999999999999999999887 11     22 23335667778888898   77777777766 223


Q ss_pred             CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      |.....+..++.+|...|++++|...+++..+.
T Consensus       336 ~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          336 ADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            444557888999999999999999999998753

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.40  E-value=5.6e-11  Score=109.12  Aligned_cols=213  Identities=10%  Similarity=-0.017  Sum_probs=119.5

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881          202 KEALEHFNYMQLCGFRPNHAGIVGALTACA-------FLGAL-------DQGRWIHAYVDRNGIELDIILGTAIIDMYAK  267 (498)
Q Consensus       202 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  267 (498)
                      ++|...|++..... +-+...|..+...+.       ..|++       ++|..+|++..+.-.+.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            45556666655531 223334444444433       23554       6666666666652113344566666666666


Q ss_pred             cCCHHHHHHHHhhCCC--C-Chh-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881          268 CGCIETACSVFDSMPN--R-DVF-AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL  343 (498)
Q Consensus       268 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~  343 (498)
                      .|++++|..+|+++.+  | +.. .|..++..+.+.|++++|..+|++..+..  |+           +...|...+...
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~-----------~~~~~~~~a~~~  178 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RT-----------RHHVYVTAALME  178 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TC-----------CTHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CC-----------CHHHHHHHHHHH
Confidence            6666666666666543  2 232 56666666666666777777776666531  22           233443333332


Q ss_pred             h-hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CchHHHHHHHHhHhcCCcc
Q 010881          344 G-RAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVER---SLD-HEGVHVLLSNIYASTEQWN  416 (498)
Q Consensus       344 ~-~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~  416 (498)
                      . ..|++++|..+|++. ...| +...|..++..+...|++++|..+|+++++.   .|+ ....+..++..+.+.|+.+
T Consensus       179 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~  258 (308)
T 2ond_A          179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA  258 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            2 256677777776665 2223 4566666666666667777777777777664   232 3445666666666667777


Q ss_pred             hHHHHHHhhhhC
Q 010881          417 GVEKVRRGMEDN  428 (498)
Q Consensus       417 ~a~~~~~~m~~~  428 (498)
                      +|..+++++.+.
T Consensus       259 ~a~~~~~~a~~~  270 (308)
T 2ond_A          259 SILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            777666666543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.39  E-value=1.6e-10  Score=106.01  Aligned_cols=213  Identities=8%  Similarity=-0.038  Sum_probs=154.0

Q ss_pred             HHHHHHHhhCCC---CChhHHHHHHHHHH-------hCCCH-------hHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc
Q 010881          171 SIARQMFDKMPE---KNAVSWSAMINGYV-------QVDLF-------KEALEHFNYMQLCGFRPN-HAGIVGALTACAF  232 (498)
Q Consensus       171 ~~A~~~~~~~~~---~~~~~~~~li~~~~-------~~g~~-------~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~  232 (498)
                      ++|..+|++...   .+...|..++..+.       +.|++       ++|..+|++..+. +.|+ ...+..+...+..
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHh
Confidence            344455554432   24555555555544       34664       7888888887763 2343 4467777777777


Q ss_pred             cCChHHHHHHHHHHHHhCCCCC-hh-HHHHHHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHH-hcCChHHHH
Q 010881          233 LGALDQGRWIHAYVDRNGIELD-II-LGTAIIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLA-NHDQSASAI  306 (498)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~-~~~~~~~a~  306 (498)
                      .|++++|..+|+.+.+.  .|+ .. +|..++..+.+.|++++|..+|++..+.   +...|........ ..|+.++|.
T Consensus       112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888887764  343 33 7888888888888888888888877652   3334433332222 369999999


Q ss_pred             HHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCC
Q 010881          307 ELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P---IEP--DNYVLGALLNACRVHGD  380 (498)
Q Consensus       307 ~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~  380 (498)
                      .+|++..+.  .|+           +...|..++..+.+.|++++|..+|++. .   +.|  ....|..++..+...|+
T Consensus       190 ~~~~~al~~--~p~-----------~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~  256 (308)
T 2ond_A          190 KIFELGLKK--YGD-----------IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD  256 (308)
T ss_dssp             HHHHHHHHH--HTT-----------CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHh--CCC-----------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC
Confidence            999998874  344           5788999999999999999999999988 2   355  46688888999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCc
Q 010881          381 VDLGKETVESLVERSLDHE  399 (498)
Q Consensus       381 ~~~A~~~~~~~~~~~~~~~  399 (498)
                      .+.|..+++++++..|++.
T Consensus       257 ~~~a~~~~~~a~~~~p~~~  275 (308)
T 2ond_A          257 LASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHccccc
Confidence            9999999999999999865

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=4e-11  Score=100.72  Aligned_cols=162  Identities=14%  Similarity=0.022  Sum_probs=142.0

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881          255 IILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP  331 (498)
Q Consensus       255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~  331 (498)
                      ...+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|...++++.+.  .|+           
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------   74 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APD-----------   74 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC-----------
Confidence            34567788889999999999999999875   36678888999999999999999999999875  233           


Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI-EPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +...+..+...+...|++++|...++++ .. +.+...+..+...+...|++++|...++++++..|.++..+..++.++
T Consensus        75 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~  154 (186)
T 3as5_A           75 NVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSY  154 (186)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence            5788999999999999999999999988 32 347888888999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...|++++|.+.+++..+..
T Consensus       155 ~~~~~~~~A~~~~~~~~~~~  174 (186)
T 3as5_A          155 EQMGRHEEALPHFKKANELD  174 (186)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcC
Confidence            99999999999999887643

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=1.3e-11  Score=113.24  Aligned_cols=237  Identities=12%  Similarity=0.011  Sum_probs=141.3

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHhhCCC--------C---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc------CCCC
Q 010881          156 SWTSLINGYAKSGQISIARQMFDKMPE--------K---NAVSWSAMINGYVQVDLFKEALEHFNYMQLC------GFRP  218 (498)
Q Consensus       156 ~~~~li~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p  218 (498)
                      ++..+...+...|++++|...|+++.+        .   ...++..+...|...|++++|...+++....      +-.|
T Consensus        29 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  108 (311)
T 3nf1_A           29 TLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP  108 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            344444444445555555554444432        1   2345666777777777777777777776653      2122


Q ss_pred             -CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-------
Q 010881          219 -NHAGIVGALTACAFLGALDQGRWIHAYVDRN------GI-ELDIILGTAIIDMYAKCGCIETACSVFDSMPN-------  283 (498)
Q Consensus       219 -~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------  283 (498)
                       ....+..+...+...|++++|...++.+.+.      +. +....++..+...|...|++++|...|+++.+       
T Consensus       109 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~  188 (311)
T 3nf1_A          109 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLG  188 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Confidence             3445666777777778888888777776654      21 22345667778888888888888888776542       


Q ss_pred             C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHH
Q 010881          284 R----DVFAYTSLISGLANHDQSASAIELFMRMQLEG-------VVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAA  352 (498)
Q Consensus       284 ~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  352 (498)
                      +    ...++..+...|...|++++|...++++.+..       ..+...     ........+..+...+...+.+.+|
T Consensus       189 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~a  263 (311)
T 3nf1_A          189 PDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK-----PIWMHAEEREECKGKQKDGTSFGEY  263 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C-----CHHHHHHHHHHC-------CCSCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH-----HHHHHHHHHHHhcCchhhHHHHHHH
Confidence            1    23467778888889999999999998887631       111100     0000122233333444455566666


Q ss_pred             HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          353 KKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       353 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      ...+... ...| +..++..+...|...|++++|.+.+++++++.|.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          264 GGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             C---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            6666666 3334 5678888999999999999999999999988764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.32  E-value=1.4e-10  Score=101.43  Aligned_cols=175  Identities=11%  Similarity=-0.022  Sum_probs=116.6

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881          221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLA  297 (498)
Q Consensus       221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  297 (498)
                      ..+......+...|++++|...|+...+..-+++...+..+..+|...|++++|...|++..+   .+...|..+...|.
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   87 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR   87 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH
Confidence            344444444455555555555555555443224555555566666666777777666665543   24456777777888


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh-------HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HH
Q 010881          298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV-------QHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD---NY  366 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~  366 (498)
                      ..|++++|...+++..+.  .|+           +.       ..|..+...+...|++++|...|++. ...|+   ..
T Consensus        88 ~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~  154 (228)
T 4i17_A           88 DMKNNQEYIATLTEGIKA--VPG-----------NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTD  154 (228)
T ss_dssp             HTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHH--CCC-----------cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHH
Confidence            888888888888888774  333           23       56888889999999999999999998 66776   56


Q ss_pred             HHHHHHHHHHhcCCH---------------------------HHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          367 VLGALLNACRVHGDV---------------------------DLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~---------------------------~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                      .|..+...|...|+.                           ++|+..+++++++.|+++.+...+..+
T Consensus       155 ~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i  223 (228)
T 4i17_A          155 ALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            777777777776665                           667777777777777766555555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.32  E-value=1.8e-09  Score=101.97  Aligned_cols=200  Identities=11%  Similarity=-0.052  Sum_probs=120.3

Q ss_pred             HHHHHHHHHhCCCHhHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC----Chh
Q 010881          188 WSAMINGYVQVDLFKEALEHFNYMQLC----GFR--PN-HAGIVGALTACAFLGALDQGRWIHAYVDRNGIEL----DII  256 (498)
Q Consensus       188 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~  256 (498)
                      +..+...+...|++++|...+++..+.    +..  |. ...+..+...+...|++++|...++......-..    ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            344555566666666666666655432    111  21 2234445555666666666666666655432111    123


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC----CC-hhHHH-----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSMPN----RD-VFAYT-----SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI  326 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  326 (498)
                      ++..+...+...|++++|...+++...    ++ ...+.     ..+..+...|++++|...+++.....  |..     
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--~~~-----  248 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE--FAN-----  248 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC--CTT-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC--CCc-----
Confidence            455666677777777777777765431    11 11122     22234667888888888888775432  110     


Q ss_pred             hCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881          327 YGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEPDN-YVLGALLNACRVHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       327 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  396 (498)
                        .......+..+...+...|++++|...+++.       +..++. ..+..+..++...|+.++|...++++++..+
T Consensus       249 --~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~  324 (373)
T 1hz4_A          249 --NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  324 (373)
T ss_dssp             --CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             --chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhc
Confidence              0112335677888899999999999998876       211222 2566677788899999999999999887553

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.31  E-value=1.6e-10  Score=109.45  Aligned_cols=228  Identities=10%  Similarity=-0.058  Sum_probs=139.4

Q ss_pred             HHHHHHhCCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--C----CChhHHH
Q 010881          191 MINGYVQVDLFKEALEHFNYMQLCGF-RPN----HAGIVGALTACAFLGALDQGRWIHAYVDRNGI--E----LDIILGT  259 (498)
Q Consensus       191 li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~----~~~~~~~  259 (498)
                      ....+...|++++|+..|++..+.-. .++    ..++..+...+...|+++.|...+....+..-  .    ....+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34445566677777776666654210 111    23455556666666777777666666554210  0    1134556


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881          260 AIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE  330 (498)
Q Consensus       260 ~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~  330 (498)
                      .+..+|...|++++|...|++..+     ++    ..++..+...|...|++++|...+++..+..        ...+.+
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~--------~~~~~~  258 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS--------REKVPD  258 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--------HHHCGG
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--------HhhCCh
Confidence            677777777777777777766543     11    2466777777888888888888888776620        000111


Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCch
Q 010881          331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM----PI--EP-DNYVLGALLNACRVHGD---VDLGKETVESLVERSLDHEG  400 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~  400 (498)
                      ....++..+..++.+.|++++|...+++.    .-  .| ....+..+...+...++   +.+|+..+++. ...|....
T Consensus       259 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~  337 (378)
T 3q15_A          259 LLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEA  337 (378)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHH
Confidence            13667777888888888888888888776    11  22 23344555556666677   66666666652 12233344


Q ss_pred             HHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          401 VHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .+..++..|...|++++|...+++..+
T Consensus       338 ~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          338 CARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            566788888888888888888877754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.31  E-value=5.5e-09  Score=98.59  Aligned_cols=302  Identities=11%  Similarity=-0.020  Sum_probs=192.6

Q ss_pred             HHHHHHHhCCCchHHHHHHHHhHHCCCCCCcc----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-c----hhHHHH
Q 010881           58 TMIRGFAEKNEPIKAFALYKQMLRSDFLPNNY----TFSFILRACADTSCLFVGLICHAQVIRLGWES-Y----DFVLNG  128 (498)
Q Consensus        58 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~  128 (498)
                      .....+...|++++|...+++........+..    ++..+...+...|+++.|...+++..+..... +    ..++..
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   98 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQ   98 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34455667899999999999887743111111    34555566778899999988888877642211 1    122455


Q ss_pred             HHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCHhHH
Q 010881          129 LLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEA  204 (498)
Q Consensus       129 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a  204 (498)
                      +...+...|++++|.+.+++                        +.++......+    ....+..+...+...|++++|
T Consensus        99 la~~~~~~G~~~~A~~~~~~------------------------al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  154 (373)
T 1hz4_A           99 QSEILFAQGFLQTAWETQEK------------------------AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  154 (373)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHH------------------------HHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHH
Confidence            66667777777777766643                        33333333222    234556677788888999999


Q ss_pred             HHHHHHHHHcCCC--C--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCCh-hHHH-----HHHHHHHhcCCHHHH
Q 010881          205 LEHFNYMQLCGFR--P--NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDI-ILGT-----AIIDMYAKCGCIETA  274 (498)
Q Consensus       205 ~~~~~~m~~~g~~--p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A  274 (498)
                      ...+++.......  +  ...++..+...+...|++++|...++......-.++. ..+.     ..+..+...|++++|
T Consensus       155 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  234 (373)
T 1hz4_A          155 EASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA  234 (373)
T ss_dssp             HHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHH
Confidence            8888887754221  1  2345667777788889999999998887664212221 1121     233457789999999


Q ss_pred             HHHHhhCCCCC-------hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC-hHHHHHHHHHHhhc
Q 010881          275 CSVFDSMPNRD-------VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG-VQHYGCLVDLLGRA  346 (498)
Q Consensus       275 ~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~-~~~~~~l~~~~~~~  346 (498)
                      ...++....++       ...+..+...+...|++++|...+++.......        .+..++ ..++..+..++...
T Consensus       235 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~--------~~~~~~~~~~~~~la~~~~~~  306 (373)
T 1hz4_A          235 ANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS--------LRLMSDLNRNLLLLNQLYWQA  306 (373)
T ss_dssp             HHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CcchhhHHHHHHHHHHHHHHh
Confidence            99999887632       124567788899999999999999988653100        011112 24677788899999


Q ss_pred             CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          347 GMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       347 g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      |+.++|...+++. ...+..    ..+..+...|  +....+++.+....|.
T Consensus       307 g~~~~A~~~l~~al~~~~~~----g~~~~~~~~g--~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          307 GRKSDAQRVLLDALKLANRT----GFISHFVIEG--EAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             TCHHHHHHHHHHHHHHHHHH----CCCHHHHTTH--HHHHHHHHHHHHTTCS
T ss_pred             CCHHHHHHHHHHHHHHhccc----cHHHHHHHcc--HHHHHHHHHHHhCCCC
Confidence            9999999999876 110100    0112233333  5566666776666664

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.30  E-value=1.1e-08  Score=102.94  Aligned_cols=381  Identities=7%  Similarity=-0.032  Sum_probs=256.9

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCC---hhHHHHHhhhcC--C---CCcchHHHHHHHHHhCCCc----
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGD---LSHGYRLFVCLQ--Y---RTTFIWNTMIRGFAEKNEP----   69 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~---~~~A~~~~~~~~--~---~~~~~~~~li~~~~~~~~~----   69 (498)
                      +.++.+++.++.. ++.....|...+..-.+.  |+   ++.+..+|++..  .   |++..|...+....+.++.    
T Consensus        83 ~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~  159 (679)
T 4e6h_A           83 KQVYETFDKLHDR-FPLMANIWCMRLSLEFDK--MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGG  159 (679)
T ss_dssp             HHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTH
T ss_pred             HHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccccccc
Confidence            4678899998877 566788999999998888  88   999999999865  3   7888888888776665554    


Q ss_pred             ----hHHHHHHHHhHH-CCC-CCCc-chHHHHHHHHHc---------cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 010881           70 ----IKAFALYKQMLR-SDF-LPNN-YTFSFILRACAD---------TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLY  133 (498)
Q Consensus        70 ----~~A~~~~~~m~~-~~~-~p~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  133 (498)
                          +...++|+.... .|. .|+. ..|...+.....         .++++.+..+|+.++.........+|......-
T Consensus       160 ~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe  239 (679)
T 4e6h_A          160 EEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWE  239 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence                334478888765 366 5643 466666655432         335677888998888532222223332222111


Q ss_pred             Hh-------------CCChhhHHHHhhc-------cCC--------------C--C------hhhHHHHHHHHHccC---
Q 010881          134 AT-------------CNCMDPARKLFDM-------SVN--------------R--D------VISWTSLINGYAKSG---  168 (498)
Q Consensus       134 ~~-------------~g~~~~a~~~~~~-------~~~--------------~--~------~~~~~~li~~~~~~~---  168 (498)
                      ..             ..+++.|...+.+       +..              |  +      ...|...+.---..+   
T Consensus       240 ~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l  319 (679)
T 4e6h_A          240 QDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLEL  319 (679)
T ss_dssp             HHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCC
T ss_pred             HhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccc
Confidence            11             1123334444432       111              0  0      123444444322222   


Q ss_pred             ----CHHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHH-HHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHH
Q 010881          169 ----QISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEAL-EHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGR  240 (498)
Q Consensus       169 ----~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  240 (498)
                          ..+....+|++...   .+...|-..+..+...|+.++|. .+|++.... .+.+...+...+......|+++.|.
T Consensus       320 ~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR  398 (679)
T 4e6h_A          320 SDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIE  398 (679)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHH
Confidence                12334455665542   26677888888888889999997 999999874 3344445566777778889999999


Q ss_pred             HHHHHHHHhC---------CCC------------ChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC----ChhHHHHHHHH
Q 010881          241 WIHAYVDRNG---------IEL------------DIILGTAIIDMYAKCGCIETACSVFDSMPNR----DVFAYTSLISG  295 (498)
Q Consensus       241 ~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~  295 (498)
                      .+|+.+.+..         ..|            ...+|...++...+.|.++.|..+|..+.+.    ....|...+..
T Consensus       399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~l  478 (679)
T 4e6h_A          399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYI  478 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            9999987641         013            2346888888888899999999999988643    22333333222


Q ss_pred             HHhc-CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHH
Q 010881          296 LANH-DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP----DNYVLG  369 (498)
Q Consensus       296 ~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~  369 (498)
                      -.+. ++.+.|..+|+..++.  .|+           +...|...++.....|+.+.|..+|++. ...|    ....|.
T Consensus       479 E~~~~~d~e~Ar~ife~~Lk~--~p~-----------~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~  545 (679)
T 4e6h_A          479 EYHISKDTKTACKVLELGLKY--FAT-----------DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQ  545 (679)
T ss_dssp             HHTTTSCCHHHHHHHHHHHHH--HTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHH--CCC-----------chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            2333 4589999999999885  333           5677788899888999999999999997 3333    356788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          370 ALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      .++..-...|+.+.+..+.+++.+..|+++
T Consensus       546 ~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          546 KVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            888888999999999999999999999876

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.29  E-value=2.1e-11  Score=119.02  Aligned_cols=179  Identities=9%  Similarity=-0.075  Sum_probs=156.1

Q ss_pred             hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH-HHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHH
Q 010881          236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI-ETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMR  311 (498)
Q Consensus       236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~  311 (498)
                      ++.+...+....... +.+...+..+..+|...|++ ++|...|++..+   .+...|..+...|...|++++|...|++
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            455666666555443 45778899999999999999 999999998764   3578999999999999999999999999


Q ss_pred             HHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc---------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--
Q 010881          312 MQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA---------GMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH--  378 (498)
Q Consensus       312 m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--  378 (498)
                      ..+.              .|+...+..+..+|...         |++++|...|++. ...| +...|..+..+|...  
T Consensus       163 al~~--------------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  228 (474)
T 4abn_A          163 ALTH--------------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYF  228 (474)
T ss_dssp             HHTT--------------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhh--------------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9874              34578999999999999         9999999999998 4455 688999999999998  


Q ss_pred             ------CCHHHHHHHHHHHHhcCC---CCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          379 ------GDVDLGKETVESLVERSL---DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       379 ------g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                            |++++|+..|+++++.+|   .++.++..++.+|...|++++|.+.|++..+..
T Consensus       229 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  288 (474)
T 4abn_A          229 NTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD  288 (474)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence                  999999999999999999   899999999999999999999999999987654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.29  E-value=6.5e-10  Score=105.28  Aligned_cols=226  Identities=7%  Similarity=-0.091  Sum_probs=163.5

Q ss_pred             HHHHHccCCHHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC-----CCC-CHHHHHH
Q 010881          161 INGYAKSGQISIARQMFDKMPE-----K----NAVSWSAMINGYVQVDLFKEALEHFNYMQLCG-----FRP-NHAGIVG  225 (498)
Q Consensus       161 i~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-----~~p-~~~~~~~  225 (498)
                      ...+...|++++|...|++...     +    ...++..+...|...|++++|...+++..+..     ..+ ...++..
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            3345566777777777665532     1    23467778888888888888888888876421     111 2346667


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHh----CCCC-ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----C---ChhHHHHH
Q 010881          226 ALTACAFLGALDQGRWIHAYVDRN----GIEL-DIILGTAIIDMYAKCGCIETACSVFDSMPN-----R---DVFAYTSL  292 (498)
Q Consensus       226 ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~---~~~~~~~l  292 (498)
                      +...+...|++++|...+....+.    +.++ ...++..+..+|...|++++|...|++..+     .   ...++..+
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  267 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL  267 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence            777888888999988888777653    1111 234677788899999999999999887764     2   24567788


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCC---HHHHHHHHHhCCCCC-CHHHH
Q 010881          293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGM---LEAAKKVVREMPIEP-DNYVL  368 (498)
Q Consensus       293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p-~~~~~  368 (498)
                      ...+...|++++|...+++..+.....+        -+.....+..+...+...++   +.+|...+++.+..| ....+
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~  339 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARS--------HKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACA  339 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTC--------CSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHH
Confidence            8899999999999999999887532211        12234456777778888888   999999999875444 34466


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881          369 GALLNACRVHGDVDLGKETVESLVER  394 (498)
Q Consensus       369 ~~l~~~~~~~g~~~~A~~~~~~~~~~  394 (498)
                      ..+...|...|++++|...|+++++.
T Consensus       340 ~~la~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          340 RSAAAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            77888999999999999999998763

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.25  E-value=1.1e-10  Score=102.05  Aligned_cols=163  Identities=8%  Similarity=-0.090  Sum_probs=141.1

Q ss_pred             CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC
Q 010881          253 LDIILGTAIIDMYAKCGCIETACSVFDSMPN----RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG  328 (498)
Q Consensus       253 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~  328 (498)
                      .|+..+......+...|++++|...|++..+    ++...+..+..++...|++++|+..|++..+.  .|+        
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~--------   74 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYN--------   74 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCS--------
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--Ccc--------
Confidence            4567888889999999999999999997753    56777777999999999999999999999874  444        


Q ss_pred             CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--
Q 010881          329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN-------YVLGALLNACRVHGDVDLGKETVESLVERSLD--  397 (498)
Q Consensus       329 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--  397 (498)
                         +...+..+..+|...|++++|...+++. ...| +.       ..|..+...+...|++++|++.|+++++.+|+  
T Consensus        75 ---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~  151 (228)
T 4i17_A           75 ---LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKW  151 (228)
T ss_dssp             ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHH
T ss_pred             ---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcc
Confidence               5788999999999999999999999998 4445 44       45778888899999999999999999999999  


Q ss_pred             CchHHHHHHHHhHhcCCc---------------------------chHHHHHHhhhhC
Q 010881          398 HEGVHVLLSNIYASTEQW---------------------------NGVEKVRRGMEDN  428 (498)
Q Consensus       398 ~~~~~~~l~~~~~~~g~~---------------------------~~a~~~~~~m~~~  428 (498)
                      ++.++..++.+|...|+.                           ++|...+++..+.
T Consensus       152 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          152 KTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            888999999999998888                           7888888777654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.24  E-value=1.9e-10  Score=96.46  Aligned_cols=134  Identities=14%  Similarity=0.100  Sum_probs=95.6

Q ss_pred             ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCC
Q 010881          254 DIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIE  330 (498)
Q Consensus       254 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~  330 (498)
                      +..++..+...|...|++++|...++++.+   .+...+..+...+...|++++|...++++...  .|+          
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~----------  108 (186)
T 3as5_A           41 DVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPI----------  108 (186)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT----------
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcH----------
Confidence            344445555555555555555555554432   24456666677777778888888888877764  222          


Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881          331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG  400 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  400 (498)
                       +...+..+..++...|++++|...++++ ...| +...+..+...+...|++++|...++++++..|+++.
T Consensus       109 -~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~  179 (186)
T 3as5_A          109 -NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASV  179 (186)
T ss_dssp             -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCG
T ss_pred             -hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchh
Confidence             4677888888888889999998888887 2233 6778888889999999999999999999988887654

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.23  E-value=1e-10  Score=118.81  Aligned_cols=161  Identities=12%  Similarity=0.043  Sum_probs=112.8

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHh
Q 010881          222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLAN  298 (498)
Q Consensus       222 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~  298 (498)
                      .++.+...+...|++++|...|++..+.. +-+..++..+..+|.+.|++++|...|++..+   .+..+|..+..+|..
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~   89 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE   89 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            44445555555555555555555555443 34456666677777777777777777766543   345677777777888


Q ss_pred             cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010881          299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACR  376 (498)
Q Consensus       299 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  376 (498)
                      .|++++|++.|++..+.  .|+           +...|..+..+|...|++++|+..|++. .+.| +...|..+...+.
T Consensus        90 ~g~~~~A~~~~~kAl~l--~P~-----------~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~  156 (723)
T 4gyw_A           90 MQDVQGALQCYTRAIQI--NPA-----------FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ  156 (723)
T ss_dssp             TTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHH
Confidence            88888888888887763  444           5778888888888888888888888887 5556 5777888888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCC
Q 010881          377 VHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       377 ~~g~~~~A~~~~~~~~~~~~  396 (498)
                      ..|++++|.+.+++++++.|
T Consensus       157 ~~g~~~~A~~~~~kal~l~~  176 (723)
T 4gyw_A          157 IVCDWTDYDERMKKLVSIVA  176 (723)
T ss_dssp             HTTCCTTHHHHHHHHHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCh
Confidence            88888888888888876443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.20  E-value=5.5e-11  Score=96.28  Aligned_cols=141  Identities=9%  Similarity=-0.053  Sum_probs=116.7

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHH
Q 010881          261 IIDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYG  337 (498)
Q Consensus       261 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~  337 (498)
                      |...+...|++++|+..++.....   +...+..+...|.+.|++++|+..|++.++.  .|+           +..+|.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~-----------~~~a~~   69 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QER-----------DPKAHR   69 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHH
Confidence            445566778899999999887763   4456778889999999999999999999884  455           688999


Q ss_pred             HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881          338 CLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKET-VESLVERSLDHEGVHVLLSNIYASTEQ  414 (498)
Q Consensus       338 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~  414 (498)
                      .+..+|...|++++|...|++. .+.| +...|..+...|...|++++|.+. ++++++++|+++.+|.....++...|+
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            9999999999999999999988 5566 688899999999999998876654 699999999999999988888888775

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.18  E-value=9.3e-11  Score=105.77  Aligned_cols=165  Identities=11%  Similarity=0.043  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CCC
Q 010881          255 IILGTAIIDMYAKCGCIETACSVFDSMPN-----------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGV---VPN  320 (498)
Q Consensus       255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~  320 (498)
                      ..++..+..+|...|++++|...|+++.+           ....++..+...|...|++++|...+++......   .|+
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            34555566666666666666666655431           1234677777778888888888888877765310   010


Q ss_pred             chhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010881          321 ESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI--------EP-DNYVLGALLNACRVHGDVDLGKETVES  390 (498)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~  390 (498)
                              -+....++..+...|...|++++|...+++. ..        .| ...++..+...|...|++++|...+++
T Consensus       123 --------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  194 (283)
T 3edt_B          123 --------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKE  194 (283)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             --------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence                    0124778899999999999999999999887 22        33 356788889999999999999999999


Q ss_pred             HHhcC-------------------------------------------------CCCchHHHHHHHHhHhcCCcchHHHH
Q 010881          391 LVERS-------------------------------------------------LDHEGVHVLLSNIYASTEQWNGVEKV  421 (498)
Q Consensus       391 ~~~~~-------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~  421 (498)
                      +++..                                                 |....++..++.+|...|++++|..+
T Consensus       195 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  274 (283)
T 3edt_B          195 ILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTL  274 (283)
T ss_dssp             HHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            98751                                                 23344677899999999999999999


Q ss_pred             HHhhhh
Q 010881          422 RRGMED  427 (498)
Q Consensus       422 ~~~m~~  427 (498)
                      +++..+
T Consensus       275 ~~~al~  280 (283)
T 3edt_B          275 EDCASR  280 (283)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            998765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.16  E-value=6e-10  Score=101.32  Aligned_cols=163  Identities=11%  Similarity=-0.050  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCchhhh
Q 010881          256 ILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANH-DQSASAIELFMRMQLEGVVPNESMSE  325 (498)
Q Consensus       256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~  325 (498)
                      .+++.+..+|...|++++|...|++..+     .+    ..+++.+...|... |++++|+..|++..+..  |+.    
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~----  151 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQD----  151 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHT----
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhC----
Confidence            3455555555556666555555554432     11    34677888889886 99999999999987631  110    


Q ss_pred             hhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          326 IYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD---N-----YVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       326 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                        +-.+ ...++..+...+.+.|++++|...|++. ...|+   .     ..|..+..++...|++++|...+++++++.
T Consensus       152 --~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          152 --QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (292)
T ss_dssp             --TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             --CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence              0000 1457889999999999999999999987 32332   1     156778888999999999999999999999


Q ss_pred             CCCchH-----HHHHHHHhH--hcCCcchHHHHHHhhh
Q 010881          396 LDHEGV-----HVLLSNIYA--STEQWNGVEKVRRGME  426 (498)
Q Consensus       396 ~~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~m~  426 (498)
                      |.....     +..++.++.  ..+++++|+..|+++.
T Consensus       230 p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          230 PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             --------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            875543     334555554  4567888888886554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.14  E-value=1.4e-09  Score=98.00  Aligned_cols=232  Identities=11%  Similarity=-0.014  Sum_probs=145.2

Q ss_pred             HhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC----ChhHHHHHHHHHHhCCCHhHHHHHHH
Q 010881          134 ATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK----NAVSWSAMINGYVQVDLFKEALEHFN  209 (498)
Q Consensus       134 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~  209 (498)
                      ...|++++|...|+                        +|++++.+...+    ...++..+...|...|++++|...|+
T Consensus        12 ~~~~~~~~A~~~~~------------------------~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~   67 (283)
T 3edt_B           12 SGLVPRGSAVPLCK------------------------QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLN   67 (283)
T ss_dssp             -CCSCSSSHHHHHH------------------------HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHH------------------------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            34577777777764                        344555444322    34566777777888888888888887


Q ss_pred             HHHHc------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------C-CCCChhHHHHHHHHHHhcCCHHHHH
Q 010881          210 YMQLC------GFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRN------G-IELDIILGTAIIDMYAKCGCIETAC  275 (498)
Q Consensus       210 ~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~  275 (498)
                      +..+.      +-.| ...++..+...+...|++++|...+..+.+.      . .+....++..+...|...|++++|.
T Consensus        68 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  147 (283)
T 3edt_B           68 DALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVE  147 (283)
T ss_dssp             HHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHH
Confidence            77653      2222 3446677777778888888888888776654      1 1233566777888888888888888


Q ss_pred             HHHhhCCCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHH
Q 010881          276 SVFDSMPNR-----------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLL  343 (498)
Q Consensus       276 ~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~  343 (498)
                      ..|+++.+.           ...++..+...|...|++++|...+++..+..  |..   ......+ ....+..+...+
T Consensus       148 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~---~~~~~~~~~~~~~~~~~~~~  222 (283)
T 3edt_B          148 YYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRA--HEK---EFGSVNGDNKPIWMHAEERE  222 (283)
T ss_dssp             HHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH---HSSSCCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh---cCCCcchhHHHHHHHHHHHH
Confidence            888766431           24577888889999999999999999887631  000   0000111 233444444444


Q ss_pred             hhc------CCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881          344 GRA------GMLEAAKKVVREMP-IEP-DNYVLGALLNACRVHGDVDLGKETVESLVER  394 (498)
Q Consensus       344 ~~~------g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  394 (498)
                      ...      ..+.++...++..+ ..| ...++..+...|...|++++|...++++++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          223 ESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             hcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            332      23445555555552 233 4567888999999999999999999998864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.12  E-value=2.6e-10  Score=116.42  Aligned_cols=169  Identities=12%  Similarity=-0.030  Sum_probs=97.5

Q ss_pred             hccCChHHHHHHHHHHH--------HhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhc
Q 010881          231 AFLGALDQGRWIHAYVD--------RNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANH  299 (498)
Q Consensus       231 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~  299 (498)
                      ...|++++|...++.+.        +.. +.+...+..+..+|...|++++|...|+++.+   .+...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            45556666666666555        222 33445555666666666666666666665543   2445566666666666


Q ss_pred             CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010881          300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRV  377 (498)
Q Consensus       300 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  377 (498)
                      |++++|...|++..+.  .|+           +...|..+..++.+.|++++ ...|++. ...| +...|..+..++..
T Consensus       481 g~~~~A~~~~~~al~l--~P~-----------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~  546 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDT--FPG-----------ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSA  546 (681)
T ss_dssp             TCHHHHHHHHHHHHHH--STT-----------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            6666666666666553  233           35556666666666666666 6666655 3334 45556666666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881          378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ  414 (498)
Q Consensus       378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  414 (498)
                      .|++++|++.|+++++.+|++..++..++.++...++
T Consensus       547 ~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          547 EGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             TTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             cCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            6666666666666666666666666666666655433

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.12  E-value=1.9e-09  Score=84.97  Aligned_cols=130  Identities=15%  Similarity=0.120  Sum_probs=114.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CC
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-PD  364 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~  364 (498)
                      ..|..+...+...|++++|..+++++.+..  |+           +...+..+...+...|++++|...++++ ... .+
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~   68 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PR-----------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS   68 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--Cc-----------chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc
Confidence            356778888999999999999999998752  32           5778889999999999999999999998 323 46


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...+..+...+...|++++|...++++++..|.+...+..++.++...|++++|...++++.+..
T Consensus        69 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           69 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            77888899999999999999999999999999998899999999999999999999999887643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.12  E-value=4.5e-09  Score=93.80  Aligned_cols=191  Identities=12%  Similarity=-0.034  Sum_probs=148.8

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881          252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-D---VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE  325 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  325 (498)
                      +.+...+..+...+.+.|++++|...|+.+.+  | +   ...+..+..+|...|++++|...|++..+.  .|+.    
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~----   85 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQID----   85 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC----
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCC----
Confidence            34556677778888899999999999998875  3 3   567888889999999999999999999885  2321    


Q ss_pred             hhCCCCChHHHHHHHHHHhh--------cCCHHHHHHHHHhC-CCCCC-HHHH-----------------HHHHHHHHhc
Q 010881          326 IYGIEPGVQHYGCLVDLLGR--------AGMLEAAKKVVREM-PIEPD-NYVL-----------------GALLNACRVH  378 (498)
Q Consensus       326 ~~~~~~~~~~~~~l~~~~~~--------~g~~~~A~~~~~~~-~~~p~-~~~~-----------------~~l~~~~~~~  378 (498)
                          +.....+..+..++..        .|++++|...|+++ ...|+ ....                 ..+...|...
T Consensus        86 ----~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~  161 (261)
T 3qky_A           86 ----PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR  161 (261)
T ss_dssp             ----TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                1135678888889988        99999999999988 33342 2222                 4567789999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCc---hHHHHHHHHhHhc----------CCcchHHHHHHhhhhCCccccCceeEEEECCEE
Q 010881          379 GDVDLGKETVESLVERSLDHE---GVHVLLSNIYAST----------EQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVV  445 (498)
Q Consensus       379 g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~  445 (498)
                      |++++|+..|+++++..|+++   ..+..++.+|...          |++++|...++++.+..                
T Consensus       162 g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----------------  225 (261)
T 3qky_A          162 ELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----------------  225 (261)
T ss_dssp             TCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC----------------
T ss_pred             cCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC----------------
Confidence            999999999999999999854   4688899999876          89999999999987643                


Q ss_pred             EEEeeCCCCCcchHHHHHHHHHHHHHHHhc
Q 010881          446 CEFVSGERTNVLMEEIVLLLFGIDKHLKSL  475 (498)
Q Consensus       446 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  475 (498)
                             +.++...+....+..+...+.+.
T Consensus       226 -------p~~~~~~~a~~~l~~~~~~~~~~  248 (261)
T 3qky_A          226 -------PDSPLLRTAEELYTRARQRLTEL  248 (261)
T ss_dssp             -------TTCTHHHHHHHHHHHHHHHHHHH
T ss_pred             -------CCChHHHHHHHHHHHHHHHHHHh
Confidence                   23556667777777777766664

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.11  E-value=2.6e-09  Score=97.12  Aligned_cols=218  Identities=9%  Similarity=-0.059  Sum_probs=152.4

Q ss_pred             CHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCChHHHHHHH
Q 010881          169 QISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRPN-HAGIVGALTACAFLGALDQGRWIH  243 (498)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  243 (498)
                      ++++|...|++.           ...|...|++++|...|.+..+.    |-.++ ..+|..+...+...|++++|...+
T Consensus        32 ~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  100 (292)
T 1qqe_A           32 KFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (292)
T ss_dssp             HHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            366666665543           45677788888888888877543    22222 457777888888888888888888


Q ss_pred             HHHHHhCC---CC--ChhHHHHHHHHHHhc-CCHHHHHHHHhhCCC--C---C----hhHHHHHHHHHHhcCChHHHHHH
Q 010881          244 AYVDRNGI---EL--DIILGTAIIDMYAKC-GCIETACSVFDSMPN--R---D----VFAYTSLISGLANHDQSASAIEL  308 (498)
Q Consensus       244 ~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~--~---~----~~~~~~li~~~~~~~~~~~a~~~  308 (498)
                      +...+...   .+  ...+++.+..+|... |++++|...|++..+  |   +    ..++..+...+...|++++|+..
T Consensus       101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~  180 (292)
T 1qqe_A          101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI  180 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            77765321   11  135778888899996 999999999988764  1   1    34688899999999999999999


Q ss_pred             HHHHHHcCCCCCchhhhhhCCC-C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH------HHHHHHHHHH--h
Q 010881          309 FMRMQLEGVVPNESMSEIYGIE-P-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNY------VLGALLNACR--V  377 (498)
Q Consensus       309 ~~~m~~~~~~p~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------~~~~l~~~~~--~  377 (498)
                      |++..+..  |+.      +.. . ....|..+..++...|++++|...|++. .+.|+..      .+..++.++.  .
T Consensus       181 ~~~al~~~--~~~------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~  252 (292)
T 1qqe_A          181 YSKLIKSS--MGN------RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGD  252 (292)
T ss_dssp             HHHHHHTT--SSC------TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHH--hcC------CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCC
Confidence            99998853  331      000 0 1236788889999999999999999998 5556422      3444556664  4


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          378 HGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                      .+++++|+..|+++..++|........+
T Consensus       253 ~~~~~~A~~~~~~~~~l~~~~~~~~~~~  280 (292)
T 1qqe_A          253 SEQLSEHCKEFDNFMRLDKWKITILNKI  280 (292)
T ss_dssp             TTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence            5679999999988888877654444433

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.09  E-value=6.9e-09  Score=92.73  Aligned_cols=237  Identities=8%  Similarity=-0.067  Sum_probs=158.5

Q ss_pred             cCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010881          167 SGQISIARQMFDKMPEKN-AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAY  245 (498)
Q Consensus       167 ~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  245 (498)
                      .|++..++.-..++...+ ...-.-+.++|...|++...         ..-.|....+..+...+ ..+    +...+++
T Consensus        26 ~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~   91 (310)
T 3mv2_B           26 TGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELEN   91 (310)
T ss_dssp             TTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHH
T ss_pred             hhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHH
Confidence            366666666555443222 22223345677777776532         11234433433333333 222    5566666


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC-----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 010881          246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNR-----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPN  320 (498)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  320 (498)
                      ....+ +++..+...+..++...|++++|++++.+....     +...+..++..+.+.|+.+.|.+.+++|.+.  .||
T Consensus        92 l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d  168 (310)
T 3mv2_B           92 LLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IED  168 (310)
T ss_dssp             TTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCH
T ss_pred             HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Ccc
Confidence            65554 455566668888899999999999999887442     4557777888999999999999999999774  220


Q ss_pred             chhhhhhCCCCChHHHHHHHHH--HhhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 010881          321 ESMSEIYGIEPGVQHYGCLVDL--LGRAG--MLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVER-  394 (498)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  394 (498)
                      .       +..+..+...|+.+  ....|  +..+|..+|+++ ...|+..+-..++.++...|++++|.+.++.+.+. 
T Consensus       169 ~-------~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          169 T-------VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             H-------HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             c-------cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            0       00024555666655  33334  999999999999 54566444445555899999999999999988776 


Q ss_pred             ---------CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          395 ---------SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       395 ---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                               +|+++.+...++......|+  +|.++++++.+..
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence                     58888888787777777786  8999999998754

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.09  E-value=1.1e-08  Score=91.40  Aligned_cols=181  Identities=17%  Similarity=0.092  Sum_probs=127.8

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881          204 ALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI-ELDIILGTAIIDMYAKCGCIETACSVFDSMP  282 (498)
Q Consensus       204 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  282 (498)
                      |+..|++....+ .++..++..+..++...|++++|.+++......+- .-+...+...+..|.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            566666666544 45555556666777777888888877777655442 1356677778888888888888888888776


Q ss_pred             C--C-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHH
Q 010881          283 N--R-----DVFAYTSLISG--LANHD--QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA  351 (498)
Q Consensus       283 ~--~-----~~~~~~~li~~--~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  351 (498)
                      +  |     +..+...|+.+  ....|  ++.+|..+|+++.+.              .|+..+-..+..++.+.|++++
T Consensus       164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--------------~p~~~~~~lLln~~~~~g~~~e  229 (310)
T 3mv2_B          164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--------------FPTWKTQLGLLNLHLQQRNIAE  229 (310)
T ss_dssp             HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--------------SCSHHHHHHHHHHHHHHTCHHH
T ss_pred             hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--------------CCCcccHHHHHHHHHHcCCHHH
Confidence            4  3     13455555555  33334  899999999998764              2332333444558999999999


Q ss_pred             HHHHHHhC-CC----------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881          352 AKKVVREM-PI----------EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV  401 (498)
Q Consensus       352 A~~~~~~~-~~----------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  401 (498)
                      |...++.+ ..          .| ++.++..+|......|+  +|.++++++.+..|+++.+
T Consensus       230 Ae~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i  289 (310)
T 3mv2_B          230 AQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFI  289 (310)
T ss_dssp             HHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence            99999875 22          25 67777677776667787  8999999999999999843

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.08  E-value=8.9e-10  Score=98.41  Aligned_cols=202  Identities=14%  Similarity=-0.001  Sum_probs=119.2

Q ss_pred             ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHH
Q 010881          184 NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN----HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGT  259 (498)
Q Consensus       184 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  259 (498)
                      +...+..+...+.+.|++++|...|+++.+..  |+    ...+..+..++...|++++|...|+.+.+.. +.+..   
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-p~~~~---   87 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIY-QIDPR---   87 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTT---
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-CCCch---
Confidence            45556666666777777777777777776542  22    3344455555555566666666655555542 10100   


Q ss_pred             HHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCCCchhhhhh----
Q 010881          260 AIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLAN--------HDQSASAIELFMRMQLEGVVPNESMSEIY----  327 (498)
Q Consensus       260 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~~----  327 (498)
                                               ....+..+..++..        .|++++|...|+++.+.  .|+.......    
T Consensus        88 -------------------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~  140 (261)
T 3qky_A           88 -------------------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKI  140 (261)
T ss_dssp             -------------------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHH
T ss_pred             -------------------------hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHH
Confidence                                     01223334444444        66666666666666653  2321000000    


Q ss_pred             -CC-CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHH
Q 010881          328 -GI-EPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVH----------GDVDLGKETVES  390 (498)
Q Consensus       328 -~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~  390 (498)
                       .. .-....+..+..+|.+.|++++|...|+++ ...|+    ...+..+..+|...          |++++|+..+++
T Consensus       141 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~  220 (261)
T 3qky_A          141 RELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYER  220 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHH
Confidence             00 000112366788999999999999999988 33343    45677778888766          899999999999


Q ss_pred             HHhcCCCCchH---HHHHHHHhHhcCCcchH
Q 010881          391 LVERSLDHEGV---HVLLSNIYASTEQWNGV  418 (498)
Q Consensus       391 ~~~~~~~~~~~---~~~l~~~~~~~g~~~~a  418 (498)
                      +++..|+++.+   ...+..++...++++++
T Consensus       221 ~~~~~p~~~~~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          221 LLQIFPDSPLLRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHHHCTTCTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCCChHHHHHHHHHHHHHHHHHHhhhh
Confidence            99999998643   34455555555555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.06  E-value=2e-09  Score=86.68  Aligned_cols=102  Identities=6%  Similarity=-0.082  Sum_probs=93.1

Q ss_pred             CCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 010881          328 GIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL  404 (498)
Q Consensus       328 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  404 (498)
                      .+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..|+++++++|+++.++..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            4444 5778889999999999999999999998 5556 78899999999999999999999999999999999999999


Q ss_pred             HHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          405 LSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       405 l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ++.+|...|++++|...|++..+..
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999998754

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.05  E-value=3.1e-09  Score=88.53  Aligned_cols=157  Identities=15%  Similarity=0.057  Sum_probs=117.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV  333 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~  333 (498)
                      ....+...+...|++++|...|+++.+   .+...+..+...+...|++++|...+++.....              |+.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--------------p~~   73 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--------------QDN   73 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--------------CCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--------------CCh
Confidence            345566777888899999999888875   356778888888888999999998888876531              223


Q ss_pred             HHHHHHHHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHHH
Q 010881          334 QHYGCLVDL-LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH--EGVHVLLSNI  408 (498)
Q Consensus       334 ~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~  408 (498)
                      ..+..+... +...+...+|...+++. ...| +...+..+...+...|++++|...|+++++.+|+.  +..+..++.+
T Consensus        74 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~  153 (176)
T 2r5s_A           74 SYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDI  153 (176)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHH
Confidence            333222212 12222333467777776 4456 68888899999999999999999999999999875  4588899999


Q ss_pred             hHhcCCcchHHHHHHhhhh
Q 010881          409 YASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       409 ~~~~g~~~~a~~~~~~m~~  427 (498)
                      +...|+.++|...|++...
T Consensus       154 ~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          154 LSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHCSSCHHHHHHHHHHH
T ss_pred             HHHhCCCCcHHHHHHHHHH
Confidence            9999999999999887653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=9.2e-09  Score=88.51  Aligned_cols=172  Identities=10%  Similarity=-0.103  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 010881          239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYTSLISGLANHD----QSASAIELFMRMQ  313 (498)
Q Consensus       239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~----~~~~a~~~~~~m~  313 (498)
                      |...|+...+.|   +...+..+...|...+++++|...|++..+ .++..+..|...|.. +    +.++|..+|++..
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            445555555544   556666677777777777777777776654 355666667776666 5    7888888888887


Q ss_pred             HcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCH
Q 010881          314 LEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREM-PIEPD---NYVLGALLNACRV----HGDV  381 (498)
Q Consensus       314 ~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~  381 (498)
                      +.|               +...+..|...|..    .+++++|...|++. ...|+   +..+..|...|..    .+++
T Consensus        81 ~~g---------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~  145 (212)
T 3rjv_A           81 EAG---------------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDD  145 (212)
T ss_dssp             HTT---------------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred             HCC---------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence            754               56788888888877    88999999999987 44453   7788888888888    7889


Q ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHhHhc-C-----CcchHHHHHHhhhhCCc
Q 010881          382 DLGKETVESLVERSLDHEGVHVLLSNIYAST-E-----QWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       382 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~~  430 (498)
                      ++|+.+|+++.+. |.++..+..|+.+|... |     ++++|...+++..+.|.
T Consensus       146 ~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          146 VKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            9999999999888 55666888888888764 3     78999999998887764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.00  E-value=6.1e-09  Score=89.38  Aligned_cols=179  Identities=8%  Similarity=0.010  Sum_probs=119.9

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHH
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYA  266 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  266 (498)
                      .+......+...|++++|+..|++..+.  .|+........    ....              ...........+..+|.
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~----~~~~--------------~~~~~~~~~~~lg~~~~   65 (208)
T 3urz_A            6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT----NVDK--------------NSEISSKLATELALAYK   65 (208)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH----HSCT--------------TSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh----hhcc--------------hhhhhHHHHHHHHHHHH
Confidence            3444556677888888888888887764  34332211110    0000              00111223345788888


Q ss_pred             hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHH
Q 010881          267 KCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLL  343 (498)
Q Consensus       267 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~  343 (498)
                      +.|++++|...|++..+   .+...+..+...+...|++++|...|++..+.  .|+           +..++..+..+|
T Consensus        66 ~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~a~~~lg~~~  132 (208)
T 3urz_A           66 KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EAD-----------NLAANIFLGNYY  132 (208)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------CHHHHHHHHHHH
Confidence            99999999999988764   36778888999999999999999999999884  454           578888888888


Q ss_pred             hhcCC--HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881          344 GRAGM--LEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       344 ~~~g~--~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  398 (498)
                      ...|+  .+.+...++.. ...|....+.....++...|++++|+..|++++++.|++
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          133 YLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence            66654  44556666665 322333344445666777889999999999999999974

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.00  E-value=4.1e-09  Score=95.42  Aligned_cols=159  Identities=11%  Similarity=-0.030  Sum_probs=94.2

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881          255 IILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP  331 (498)
Q Consensus       255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~  331 (498)
                      ...+..+...+...|++++|...|+++..   .+...+..+...+...|++++|...++++...  .|+           
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~-----------  183 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQD-----------  183 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCS-----------
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcc-----------
Confidence            33444444455555555555555554432   23344555555555555555555555554332  111           


Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--chHHHHHHH
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH--EGVHVLLSN  407 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~  407 (498)
                      ...........+...++.++|...+++. ...| +...+..+...+...|++++|++.|+++++.+|++  ...+..++.
T Consensus       184 ~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~  263 (287)
T 3qou_A          184 TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQE  263 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHH
Confidence            1111222222344555555666666655 2234 56777777888888888888888888888888876  667888888


Q ss_pred             HhHhcCCcchHHHHHHhhh
Q 010881          408 IYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       408 ~~~~~g~~~~a~~~~~~m~  426 (498)
                      ++...|+.++|...+++..
T Consensus       264 ~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          264 ILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHcCCCCcHHHHHHHHH
Confidence            8888888888887776654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.99  E-value=1.1e-08  Score=80.41  Aligned_cols=128  Identities=18%  Similarity=0.160  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV  333 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~  333 (498)
                      .+..+...|...|++++|..+|+++.+   .+...+..+...+...|++++|...++++...+  |+           +.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~-----------~~   69 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PR-----------SA   69 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT-----------CH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC--CC-----------ch
Confidence            345566666677777777777766542   355667777777888888888888888877642  22           46


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      ..+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++++..|+
T Consensus        70 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           70 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            77888888888999999999888887 3233 6778888888899999999999999999888775

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.99  E-value=1.2e-08  Score=88.85  Aligned_cols=89  Identities=17%  Similarity=0.115  Sum_probs=71.4

Q ss_pred             HhhcCCHHHHHHHHHhC-CCCCCH-HHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---h
Q 010881          343 LGRAGMLEAAKKVVREM-PIEPDN-YVL-----------------GALLNACRVHGDVDLGKETVESLVERSLDHE---G  400 (498)
Q Consensus       343 ~~~~g~~~~A~~~~~~~-~~~p~~-~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~  400 (498)
                      +...|++++|...|+++ ...|+. ..+                 ..+...|...|++++|+..|+++++..|+++   .
T Consensus       106 ~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~  185 (225)
T 2yhc_A          106 DRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRD  185 (225)
T ss_dssp             --CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHH
Confidence            34578999999999998 545542 222                 2345678899999999999999999999876   5


Q ss_pred             HHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881          401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  431 (498)
                      ++..++.++.+.|++++|.+.++.+...+..
T Consensus       186 a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~  216 (225)
T 2yhc_A          186 ALPLMENAYRQMQMNAQAEKVAKIIAANSSN  216 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence            6889999999999999999999998876543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.98  E-value=5.3e-09  Score=104.74  Aligned_cols=160  Identities=18%  Similarity=0.059  Sum_probs=125.0

Q ss_pred             cCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHH
Q 010881          233 LGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELF  309 (498)
Q Consensus       233 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  309 (498)
                      .|++++|...++++.+.. +.+...+..+...|...|++++|...|++..+   .+...+..+...|...|++++|...+
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            478899999999988764 55678899999999999999999999998765   35678999999999999999999999


Q ss_pred             HHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHH
Q 010881          310 MRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH---GDVDLG  384 (498)
Q Consensus       310 ~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~A  384 (498)
                      ++..+.  .|+           +...+..+..+|...|++++|.+.+++. ...| +...+..+...+...   |++++|
T Consensus        81 ~~al~~--~p~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A  147 (568)
T 2vsy_A           81 QQASDA--APE-----------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVL  147 (568)
T ss_dssp             HHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred             HHHHhc--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHH
Confidence            999885  344           5789999999999999999999999998 4445 678888999999999   999999


Q ss_pred             HHHHHHHHhcCCCCchHHHHHH
Q 010881          385 KETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       385 ~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      .+.++++++.+|.+...+..++
T Consensus       148 ~~~~~~al~~~p~~~~~~~~l~  169 (568)
T 2vsy_A          148 SAQVRAAVAQGVGAVEPFAFLS  169 (568)
T ss_dssp             HHHHHHHHHHTCCCSCHHHHTT
T ss_pred             HHHHHHHHhcCCcccChHHHhC
Confidence            9999999999999888887765

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.97  E-value=1.4e-08  Score=103.65  Aligned_cols=189  Identities=8%  Similarity=-0.045  Sum_probs=150.4

Q ss_pred             HhCCCHhHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 010881          196 VQVDLFKEALEHFNYMQ--------LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK  267 (498)
Q Consensus       196 ~~~g~~~~a~~~~~~m~--------~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  267 (498)
                      ...|++++|++.+++..        +. .+.+...+..+...+...|++++|...++.+.+.. +.+...+..+..+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            78899999999999998        32 23355678888889999999999999999998875 6678899999999999


Q ss_pred             cCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHh
Q 010881          268 CGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLG  344 (498)
Q Consensus       268 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~  344 (498)
                      .|++++|...|+++.+   .+...|..+..++.+.|++++ +..|++..+.  .|+           +...|..+..++.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~-----------~~~a~~~lg~~~~  545 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDG-----------VISAAFGLARARS  545 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTT-----------CHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCc-----------hHHHHHHHHHHHH
Confidence            9999999999998764   367789999999999999999 9999999884  344           5789999999999


Q ss_pred             hcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCch
Q 010881          345 RAGMLEAAKKVVREM-PIEPD-NYVLGALLNACRVHGD-----VDLGKETVESLVERSLDHEG  400 (498)
Q Consensus       345 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~A~~~~~~~~~~~~~~~~  400 (498)
                      +.|++++|.+.|++. ...|+ ...+..+..++...++     .+...+..+......+.++.
T Consensus       546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~  608 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR  608 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred             HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence            999999999999998 77785 5677777777766555     23333444444444444443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.96  E-value=8.6e-10  Score=89.19  Aligned_cols=123  Identities=13%  Similarity=0.019  Sum_probs=102.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 010881          292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLG  369 (498)
Q Consensus       292 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  369 (498)
                      |...+...|++++|+..+.+....  .|+           +...+..+...|.+.|++++|.+.|++. .+.| +..+|.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~-----------~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~   69 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPS--PRQ-----------KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHR   69 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCS--HHH-----------HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhccc--Ccc-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            344556678899999999887553  222           3566778999999999999999999998 5556 788999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH-HHhhhh
Q 010881          370 ALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV-RRGMED  427 (498)
Q Consensus       370 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~  427 (498)
                      .+...|...|++++|+..|+++++++|+++.++..++.+|.+.|++++|.+. +++..+
T Consensus        70 ~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           70 FLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988776 466654

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.94  E-value=1.4e-08  Score=79.18  Aligned_cols=109  Identities=7%  Similarity=-0.058  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-D  364 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~  364 (498)
                      ..+......|.+.|++++|+..|++.++.  .|+           +..+|..+..+|.+.|++++|+..+++. .+.| +
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~   80 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPE-----------NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF   80 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh
Confidence            34556667777778888888888777764  333           5677777788888888888888887776 4344 5


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                      ...|..+..++...|++++|++.|+++++++|++..++..+..+
T Consensus        81 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           81 IKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            66777777778888888888888888888888877766666554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.94  E-value=9.8e-09  Score=102.78  Aligned_cols=147  Identities=11%  Similarity=-0.062  Sum_probs=107.9

Q ss_pred             CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHH
Q 010881          198 VDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSV  277 (498)
Q Consensus       198 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  277 (498)
                      .|++++|...|++..+.. +-+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999887652 2346678888888889999999999999988775 55678888899999999999999999


Q ss_pred             HhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc---CCHHH
Q 010881          278 FDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA---GMLEA  351 (498)
Q Consensus       278 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~  351 (498)
                      |++..+   .+...+..+...|...|++++|...|++..+.  .|+           +...+..+..++...   |+.++
T Consensus        80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~l~~~~~~~~~~g~~~~  146 (568)
T 2vsy_A           80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPE-----------EPYITAQLLNWRRRLCDWRALDV  146 (568)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHhhccccHHH
Confidence            988764   45678888999999999999999999998875  333           577888899999998   99999


Q ss_pred             HHHHHHhC
Q 010881          352 AKKVVREM  359 (498)
Q Consensus       352 A~~~~~~~  359 (498)
                      |.+.+++.
T Consensus       147 A~~~~~~a  154 (568)
T 2vsy_A          147 LSAQVRAA  154 (568)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999887

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.94  E-value=3e-07  Score=89.61  Aligned_cols=202  Identities=6%  Similarity=-0.110  Sum_probs=121.1

Q ss_pred             hHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhC
Q 010881          202 KEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSM  281 (498)
Q Consensus       202 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  281 (498)
                      +.+..+|++++... +-+...|...+.-+...|+.+.|..++++....  +.+...+...... .+.++.  ...+.+..
T Consensus       196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~  269 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKY  269 (493)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHT
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHH
Confidence            44667788777643 344556666666677778888888888888877  4444443322211 011111  11122211


Q ss_pred             C----------C--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc-CC
Q 010881          282 P----------N--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA-GM  348 (498)
Q Consensus       282 ~----------~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~  348 (498)
                      .          .  .....|-..+....+.+..+.|..+|.+. ..   |.          .+...|...+..-... ++
T Consensus       270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~---~~----------~~~~v~i~~A~lE~~~~~d  335 (493)
T 2uy1_A          270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN---EG----------VGPHVFIYCAFIEYYATGS  335 (493)
T ss_dssp             C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT---SC----------CCHHHHHHHHHHHHHHHCC
T ss_pred             HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC---CC----------CChHHHHHHHHHHHHHCCC
Confidence            1          0  01234666666666677788888888887 21   11          1334444333332233 36


Q ss_pred             HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          349 LEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       349 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      .+.|..+|+..  ...-++..|...+......|+.+.|..+|+++    +.....+...+..-...|+.+.+..+++++.
T Consensus       336 ~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          336 RATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            88888888877  22223455666777777888888888888887    2345567777777777788888888777776


Q ss_pred             h
Q 010881          427 D  427 (498)
Q Consensus       427 ~  427 (498)
                      +
T Consensus       412 ~  412 (493)
T 2uy1_A          412 D  412 (493)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.90  E-value=1.6e-08  Score=81.41  Aligned_cols=97  Identities=11%  Similarity=0.015  Sum_probs=89.3

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +...+..+...+...|++++|...|++. ...| +...|..+..+|...|++++|+..|+++++.+|+++.++..++.+|
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence            5778888999999999999999999998 4445 7888999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhC
Q 010881          410 ASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~  428 (498)
                      ...|++++|...|++..+.
T Consensus       100 ~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999988764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.89  E-value=9.5e-08  Score=86.40  Aligned_cols=161  Identities=11%  Similarity=-0.033  Sum_probs=129.2

Q ss_pred             CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHH-HHHH
Q 010881          219 NHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTS-LISG  295 (498)
Q Consensus       219 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~  295 (498)
                      +...+..+...+...|++++|...++.+.+.. +-+...+..+..+|...|++++|...++++..  |+...... ....
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            34455666667777888888888888887775 66778889999999999999999999999876  44332222 2334


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHH
Q 010881          296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD---NYVLGAL  371 (498)
Q Consensus       296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l  371 (498)
                      +...++.++|...+++....  .|+           +...+..+..++...|++++|...|.++ ...|+   ...+..+
T Consensus       195 l~~~~~~~~a~~~l~~al~~--~P~-----------~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAE--NPE-----------DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             HHhhcccCccHHHHHHHHhc--CCc-----------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence            67788889999999998885  444           6889999999999999999999999998 44453   6788999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHh
Q 010881          372 LNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       372 ~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                      +..+...|+.++|...|++.+.
T Consensus       262 ~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          262 QEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999988764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.88  E-value=8e-09  Score=80.54  Aligned_cols=97  Identities=6%  Similarity=0.003  Sum_probs=89.7

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      ....+......|.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..++++++++|+++.+|..++.++
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            3678888999999999999999999998 4455 7889999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhC
Q 010881          410 ASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~  428 (498)
                      ...|++++|.+.|++..+.
T Consensus        92 ~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            9999999999999988764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.88  E-value=4.6e-08  Score=81.35  Aligned_cols=154  Identities=10%  Similarity=0.030  Sum_probs=112.8

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHH-HHhcCCh
Q 010881          226 ALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISG-LANHDQS  302 (498)
Q Consensus       226 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~-~~~~~~~  302 (498)
                      ....+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...|+++..  |+...+..+... +...+..
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~   90 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAE   90 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhccc
Confidence            3444556666666666666655543 55677888888889999999999999998875  333332222211 2233344


Q ss_pred             HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhc
Q 010881          303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD---NYVLGALLNACRVH  378 (498)
Q Consensus       303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~  378 (498)
                      .+|...+++..+.  .|+           +...+..+..++...|++++|...|+++ ...|+   ...+..+...+...
T Consensus        91 ~~a~~~~~~al~~--~P~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~  157 (176)
T 2r5s_A           91 SPELKRLEQELAA--NPD-----------NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL  157 (176)
T ss_dssp             CHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence            4578888888874  344           5889999999999999999999999988 55554   55888899999999


Q ss_pred             CCHHHHHHHHHHHHh
Q 010881          379 GDVDLGKETVESLVE  393 (498)
Q Consensus       379 g~~~~A~~~~~~~~~  393 (498)
                      |+.++|...|++++.
T Consensus       158 g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          158 GQGNAIASKYRRQLY  172 (176)
T ss_dssp             CSSCHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHH
Confidence            999999999998764

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.87  E-value=1.4e-07  Score=81.86  Aligned_cols=198  Identities=12%  Similarity=-0.035  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh---HHHHH
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLCGFR-PN-HAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII---LGTAI  261 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l  261 (498)
                      .+..+...+.+.|++++|+..|+++.+.... |. ...+..+..++...|++++|...|+.+.+.. +.+..   .+..+
T Consensus         6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~   84 (225)
T 2yhc_A            6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHH
Confidence            3444455556666666666666666553211 11 2344455555666666666666666655543 21221   23333


Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh-----CCCC-ChHH
Q 010881          262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY-----GIEP-GVQH  335 (498)
Q Consensus       262 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~-----~~~~-~~~~  335 (498)
                      ..++...|..     .+        ..|..+...+...|+.++|...|+++.+.  .|+.......     .+.. ....
T Consensus        85 g~~~~~~~~~-----~~--------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~~~~  149 (225)
T 2yhc_A           85 GLTNMALDDS-----AL--------QGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRLAKY  149 (225)
T ss_dssp             HHHHHHHHC---------------------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhh-----hh--------hhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHHHHH
Confidence            3333322110     00        01111222223344555555555555442  2321000000     0000 0112


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch
Q 010881          336 YGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG  400 (498)
Q Consensus       336 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  400 (498)
                      ...+...|.+.|++++|...|+++ ...|+    ...+..+..++.+.|+.++|.+.++.+....|++..
T Consensus       150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          150 EYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence            235677889999999999999998 33443    256888899999999999999999999998888653

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.86  E-value=1.7e-07  Score=80.45  Aligned_cols=130  Identities=11%  Similarity=-0.113  Sum_probs=111.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY  336 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~  336 (498)
                      .+..+...+...|++++|...|++...++...|..+...|...|++++|...|++....  .|+           +...+
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~-----------~~~~~   74 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKH-----------LAVAY   74 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc-----------chHHH
Confidence            34556778889999999999999998888889999999999999999999999999875  233           57889


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhC-CCCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881          337 GCLVDLLGRAGMLEAAKKVVREM-PIEP-----------------DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       337 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  398 (498)
                      ..+..+|...|++++|...|++. ...|                 ....+..+..+|...|++++|.+.++++++..|++
T Consensus        75 ~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           75 FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            99999999999999999999887 2222                 23678889999999999999999999999999876


Q ss_pred             c
Q 010881          399 E  399 (498)
Q Consensus       399 ~  399 (498)
                      .
T Consensus       155 ~  155 (213)
T 1hh8_A          155 R  155 (213)
T ss_dssp             G
T ss_pred             c
Confidence            3

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.86  E-value=4.3e-09  Score=96.37  Aligned_cols=164  Identities=12%  Similarity=-0.042  Sum_probs=86.6

Q ss_pred             HHHhccCChHHHHHHHHHHHHhCC---CC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh----hHHHHHH
Q 010881          228 TACAFLGALDQGRWIHAYVDRNGI---EL--DIILGTAIIDMYAKCGCIETACSVFDSMPN-----RDV----FAYTSLI  293 (498)
Q Consensus       228 ~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li  293 (498)
                      ..+...|++++|...+....+...   .+  ...+++.+..+|...|++++|...|++..+     .+.    .+++.+.
T Consensus        44 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg  123 (307)
T 2ifu_A           44 VAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG  123 (307)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            345566777777766665544210   00  123555566666666666666666665442     122    2455555


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC---CCC----
Q 010881          294 SGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI---EPD----  364 (498)
Q Consensus       294 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----  364 (498)
                      ..|.. |++++|+..|++..+..  |+      .+-.+ ...++..+..+|.+.|++++|+..|++. .+   .++    
T Consensus       124 ~~~~~-g~~~~A~~~~~~Al~~~--~~------~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  194 (307)
T 2ifu_A          124 KLMEP-LDLSKAVHLYQQAAAVF--EN------EERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTC  194 (307)
T ss_dssp             HHHTT-TCHHHHHHHHHHHHHHH--HH------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHc-CCHHHHHHHHHHHHHHH--Hh------CCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHH
Confidence            56655 66666666666665531  11      00000 1345556666666666666666666655 11   111    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881          365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV  401 (498)
Q Consensus       365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  401 (498)
                      ...+..+...+...|++++|...|++++ ..|.....
T Consensus       195 ~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~  230 (307)
T 2ifu_A          195 YKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFSGS  230 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTSTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCCCC
Confidence            1244444455555566666666666666 66655443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.86  E-value=2.4e-08  Score=79.70  Aligned_cols=98  Identities=10%  Similarity=0.005  Sum_probs=89.1

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +...+..+...+.+.|++++|...|++. ...| +...|..+..+|...|++++|+..|+++++.+|+++..+..++.+|
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   96 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            4667788889999999999999999998 4445 7888999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...|++++|.+.+++..+..
T Consensus        97 ~~~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARALA  116 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999887643

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.85  E-value=4.7e-07  Score=81.69  Aligned_cols=215  Identities=10%  Similarity=-0.025  Sum_probs=165.4

Q ss_pred             hCCC-HhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCChhHHHHHHHHH----Hhc
Q 010881          197 QVDL-FKEALEHFNYMQLCGFRPNHA-GIVGALTACAFLG--ALDQGRWIHAYVDRNGIELDIILGTAIIDMY----AKC  268 (498)
Q Consensus       197 ~~g~-~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~  268 (498)
                      +.|. .++|+..++.++..  .|+.. .++.--..+...+  +++++...++.+.... +.+..+|+.-...+    ...
T Consensus        44 ~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l  120 (306)
T 3dra_A           44 KAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN  120 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred             HcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence            3444 46888888888874  45544 4555555666667  8888888888888775 55666666554444    444


Q ss_pred             ---CCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChH--HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHH
Q 010881          269 ---GCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSA--SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLV  340 (498)
Q Consensus       269 ---g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~  340 (498)
                         +++++++.+++.+.+   +|..+|+.-.-.+.+.|.++  ++++.++++.+..  |.           |...|+.-.
T Consensus       121 ~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d--~~-----------N~sAW~~R~  187 (306)
T 3dra_A          121 NNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD--LK-----------NNSAWSHRF  187 (306)
T ss_dssp             TTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC--TT-----------CHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC--CC-----------CHHHHHHHH
Confidence               788999999988874   46778888777788888888  9999999999853  33           678888887


Q ss_pred             HHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH-HHHHHHHHHHhcC---CCCchHHHHHHHH
Q 010881          341 DLLGRAGM------LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVD-LGKETVESLVERS---LDHEGVHVLLSNI  408 (498)
Q Consensus       341 ~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~---~~~~~~~~~l~~~  408 (498)
                      .++.+.+.      ++++++.++++ ...| |...|+.+...+.+.|+.. .+..++.++.+.+   |.++.++..++.+
T Consensus       188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~  267 (306)
T 3dra_A          188 FLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI  267 (306)
T ss_dssp             HHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred             HHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence            77777776      89999999887 4455 8888988888888888744 4666888777766   7788889999999


Q ss_pred             hHhcCCcchHHHHHHhhhh
Q 010881          409 YASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       409 ~~~~g~~~~a~~~~~~m~~  427 (498)
                      |.+.|+.++|.++++.+.+
T Consensus       268 ~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          268 YTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHccCCHHHHHHHHHHHHh
Confidence            9999999999999999875

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.83  E-value=5.1e-09  Score=95.91  Aligned_cols=224  Identities=11%  Similarity=-0.048  Sum_probs=154.4

Q ss_pred             CCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc-
Q 010881          136 CNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC-  214 (498)
Q Consensus       136 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-  214 (498)
                      .|++++|.+++++..+.....+      +...++++.|...|..           ....|...|++++|...|.+..+. 
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~~~------~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~   66 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKTSF------MKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQEAEAH   66 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCS------SSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccccc------cCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4667788888765432111111      1114677777777654           467788999999999999987653 


Q ss_pred             ---CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC---CC--ChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Q 010881          215 ---GFRP-NHAGIVGALTACAFLGALDQGRWIHAYVDRNGI---EL--DIILGTAIIDMYAKCGCIETACSVFDSMPN--  283 (498)
Q Consensus       215 ---g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--  283 (498)
                         +-.+ -..+|..+...|...|++++|...++...+...   .+  ...++..+..+|.. |++++|...|++..+  
T Consensus        67 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~  145 (307)
T 2ifu_A           67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF  145 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence               2111 134778888889999999999999998765421   12  13567788888988 999999999988764  


Q ss_pred             ---CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC-hHHHHHHHHHHhhcCCHHHHHHH
Q 010881          284 ---RD----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG-VQHYGCLVDLLGRAGMLEAAKKV  355 (498)
Q Consensus       284 ---~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~  355 (498)
                         .+    ..++..+...|...|++++|+..|++....  .|+.      +..+. ..++..++.++...|++++|...
T Consensus       146 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~------~~~~~~~~~~~~~g~~~~~~g~~~~A~~~  217 (307)
T 2ifu_A          146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM--YKEM------ENYPTCYKKCIAQVLVQLHRADYVAAQKC  217 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHT------TCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHc------CChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence               11    457888999999999999999999999885  2220      11111 23677777888889999999999


Q ss_pred             HHhCCCCCC------HHHHHHHHHHHHhcCCHHHHHH
Q 010881          356 VREMPIEPD------NYVLGALLNACRVHGDVDLGKE  386 (498)
Q Consensus       356 ~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~  386 (498)
                      |++.-..|+      ......++.++ ..|+.+.+.+
T Consensus       218 ~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          218 VRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            988523332      12344455544 5667655555

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.83  E-value=8.7e-08  Score=82.30  Aligned_cols=127  Identities=12%  Similarity=0.026  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN  365 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~  365 (498)
                      .+..+...+...|++++|...|++..                .|+...+..+..+|...|++++|...|++. ...| +.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~   71 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA   71 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----------------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch
Confidence            45567778889999999999998863                235789999999999999999999999988 3334 78


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc----------------hHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHE----------------GVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ..|..+...+...|++++|++.++++++..|.+.                ..+..++.++...|++++|.+.+++..+..
T Consensus        72 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           72 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            8899999999999999999999999999888877                889999999999999999999999988754


Q ss_pred             c
Q 010881          430 V  430 (498)
Q Consensus       430 ~  430 (498)
                      .
T Consensus       152 p  152 (213)
T 1hh8_A          152 S  152 (213)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.82  E-value=4.3e-07  Score=82.41  Aligned_cols=160  Identities=9%  Similarity=-0.006  Sum_probs=121.1

Q ss_pred             HHHHHHhcCCHHHHHHHHhhCCCC-----C----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881          261 IIDMYAKCGCIETACSVFDSMPNR-----D----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP  331 (498)
Q Consensus       261 l~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~  331 (498)
                      .+..+...|++++|...+++..+.     +    ...+..+...+...+++++|+..|++........++       ..-
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~-------~~~  153 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID-------VYQ  153 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC-------TTH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc-------HHH
Confidence            467788899999999999886541     1    113334666777788999999999999884322220       001


Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-----PI---EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH----  398 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----  398 (498)
                      ...+++.+..+|...|++++|...|+++     ..   .+ ...++..+...|...|++++|...++++++..+..    
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence            1447899999999999999999999887     11   11 23477888999999999999999999999865332    


Q ss_pred             --chHHHHHHHHhHhcCC-cchHHHHHHhhhh
Q 010881          399 --EGVHVLLSNIYASTEQ-WNGVEKVRRGMED  427 (498)
Q Consensus       399 --~~~~~~l~~~~~~~g~-~~~a~~~~~~m~~  427 (498)
                        ..++..++.++.+.|+ +++|.+.+++..+
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence              4578899999999995 5999999888764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.82  E-value=7.6e-08  Score=78.82  Aligned_cols=128  Identities=9%  Similarity=-0.019  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-D  364 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~  364 (498)
                      ..+..+...+...|++++|...|.+..+.  .|+           +..++..+..++...|++++|...+++. ...| +
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   80 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPS-----------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKY   80 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            45677788889999999999999998874  333           5788999999999999999999999988 3344 6


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH--HHhHhcCCcchHHHHHHhhhh
Q 010881          365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS--NIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ...|..+...+...|++++|...++++++..|.+...+..+.  ..+...|++++|.+.++...+
T Consensus        81 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           81 IKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            788999999999999999999999999999999887775444  448889999999999887754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.81  E-value=1.5e-07  Score=80.61  Aligned_cols=158  Identities=8%  Similarity=-0.029  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHH----------------HHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881          155 ISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSA----------------MINGYVQVDLFKEALEHFNYMQLCG  215 (498)
Q Consensus       155 ~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~----------------li~~~~~~g~~~~a~~~~~~m~~~g  215 (498)
                      ..+......+.+.|++++|+..|++....   +...|..                +..+|.+.|++++|+..|++..+..
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   84 (208)
T 3urz_A            5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA   84 (208)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence            34445566778999999999999988643   3344555                5666666666666666666666542


Q ss_pred             CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC--HHHHHHHHhhCCCCChh--HHHH
Q 010881          216 FRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC--IETACSVFDSMPNRDVF--AYTS  291 (498)
Q Consensus       216 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~  291 (498)
                       +-+...+..+...+...|++++|...|+.+.+.. +.+..++..+..+|...|+  ...+...++.+..++..  .+..
T Consensus        85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  162 (208)
T 3urz_A           85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYR  162 (208)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence             2234455555555666666666666666665554 4445555555555544332  23344444444443322  1222


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH
Q 010881          292 LISGLANHDQSASAIELFMRMQL  314 (498)
Q Consensus       292 li~~~~~~~~~~~a~~~~~~m~~  314 (498)
                      +..++...|++++|...|++..+
T Consensus       163 ~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          163 DGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHccCHHHHHHHHHHHHH
Confidence            23333444455555555554443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.80  E-value=3.7e-06  Score=81.91  Aligned_cols=346  Identities=10%  Similarity=0.010  Sum_probs=212.0

Q ss_pred             hHHHHHHHHhhcCCCCChhHHHHHhhhcC--CCCcchHHHHHHHHHhCCC-chHHHHHHHHhHHC-CCCC-CcchHHHHH
Q 010881           21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQ--YRTTFIWNTMIRGFAEKNE-PIKAFALYKQMLRS-DFLP-NNYTFSFIL   95 (498)
Q Consensus        21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~-~~~p-~~~~~~~ll   95 (498)
                      .+|...+..|-.   |+++.|+.+|++..  .|++..|...+....+.++ .+....+|+..... |..| +...|...+
T Consensus        16 ~vyer~l~~~P~---~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi   92 (493)
T 2uy1_A           16 AIMEHARRLYMS---KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI   92 (493)
T ss_dssp             HHHHHHHHHHHT---TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCC---CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence            444555555533   67999999998855  4788888888887776653 45677788887664 4333 455566666


Q ss_pred             HHHH----ccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------------CCChhhHHHHhhccCC----CCh
Q 010881           96 RACA----DTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYAT-------------CNCMDPARKLFDMSVN----RDV  154 (498)
Q Consensus        96 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~a~~~~~~~~~----~~~  154 (498)
                      ..+.    ..++.+.+..+|++++......-...|......-..             .+.+..|..+++....    .+.
T Consensus        93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~  172 (493)
T 2uy1_A           93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV  172 (493)
T ss_dssp             HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred             HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence            5543    245678889999998874222112222222211111             1122223333332211    133


Q ss_pred             hhHHHHHHHHHccC----C---HHHHHHHHhhCCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHH
Q 010881          155 ISWTSLINGYAKSG----Q---ISIARQMFDKMPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIV  224 (498)
Q Consensus       155 ~~~~~li~~~~~~~----~---~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  224 (498)
                      ..|...+.--...+    +   .+.+..+|+++..   .+...|...+..+.+.|+.++|..+|++....   |....+.
T Consensus       173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~  249 (493)
T 2uy1_A          173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLS  249 (493)
T ss_dssp             HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHH
T ss_pred             HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHH
Confidence            35555444332211    0   2345567776653   25677888888889999999999999999987   5443332


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhC---------C---CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC--hhHHH
Q 010881          225 GALTACAFLGALDQGRWIHAYVDRNG---------I---ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD--VFAYT  290 (498)
Q Consensus       225 ~ll~~~~~~~~~~~a~~~~~~~~~~~---------~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~  290 (498)
                      ..   +......++.   ++.+.+.-         .   .....+|...++.+.+.++.+.|..+|+++..+.  ...|-
T Consensus       250 ~~---y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~v~i  323 (493)
T 2uy1_A          250 LY---YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFI  323 (493)
T ss_dssp             HH---HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHHHHH
T ss_pred             HH---HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChHHHH
Confidence            22   2221111111   22222211         0   1123567777777778889999999999884332  22332


Q ss_pred             HHHHHHH-hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHH
Q 010881          291 SLISGLA-NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLG  369 (498)
Q Consensus       291 ~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~  369 (498)
                      .....-. ..++.+.|..+|+...+.-  |+           +...+...++...+.|+.+.|..+|+++.  .....|.
T Consensus       324 ~~A~lE~~~~~d~~~ar~ife~al~~~--~~-----------~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~  388 (493)
T 2uy1_A          324 YCAFIEYYATGSRATPYNIFSSGLLKH--PD-----------STLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWD  388 (493)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHC--TT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHH
T ss_pred             HHHHHHHHHCCChHHHHHHHHHHHHHC--CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHH
Confidence            2222112 2346999999999998852  33           34566777888889999999999999983  3577888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          370 ALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       370 ~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                      ..+..-...|+.+.+..+++++.+
T Consensus       389 ~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          389 SMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHH
Confidence            888888889999999999998875

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.78  E-value=2.7e-08  Score=77.51  Aligned_cols=98  Identities=8%  Similarity=-0.041  Sum_probs=89.4

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|+++..+..++.++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            3567888899999999999999999998 4445 7889999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...|++++|...+++..+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhC
Confidence            99999999999999887644

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.77  E-value=3.2e-07  Score=78.80  Aligned_cols=170  Identities=11%  Similarity=-0.048  Sum_probs=97.8

Q ss_pred             HHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCC----ChhhHHHHhh
Q 010881           72 AFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCN----CMDPARKLFD  147 (498)
Q Consensus        72 A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~  147 (498)
                      |++.|++..+.|   +...+..+-..+...+++++|..+|++..+.|   +...+..|..+|.. +    ++++|.+.|+
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~   77 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE   77 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence            445555555432   44445555555555566666666666655543   33444445555554 4    5556666555


Q ss_pred             ccCCC-ChhhHHHHHHHHHc----cCCHHHHHHHHhhCCCCC-----hhHHHHHHHHHHh----CCCHhHHHHHHHHHHH
Q 010881          148 MSVNR-DVISWTSLINGYAK----SGQISIARQMFDKMPEKN-----AVSWSAMINGYVQ----VDLFKEALEHFNYMQL  213 (498)
Q Consensus       148 ~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~  213 (498)
                      +..++ ++.++..|...|..    .+++++|+..|++..+.+     ..++..|...|..    .+++++|+..|++..+
T Consensus        78 ~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           78 KAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            54332 44555555555554    566777777776665432     4666677777776    6777778777777776


Q ss_pred             cCCCCCHHHHHHHHHHHhcc-C-----ChHHHHHHHHHHHHhC
Q 010881          214 CGFRPNHAGIVGALTACAFL-G-----ALDQGRWIHAYVDRNG  250 (498)
Q Consensus       214 ~g~~p~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~  250 (498)
                      .  ..+...+..+...|... |     +.++|...++...+.|
T Consensus       158 ~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          158 L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            5  22333444555555432 2     6777777777777766

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.76  E-value=2.3e-07  Score=71.53  Aligned_cols=115  Identities=17%  Similarity=0.130  Sum_probs=95.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-C
Q 010881          286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE-P  363 (498)
Q Consensus       286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p  363 (498)
                      ...|..+...+...|++++|...++++...  .|+           +..++..+...+...|++++|...++++ ... .
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~   75 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPN-----------NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN   75 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcC-----------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc
Confidence            456777888888899999999999998875  233           5778888999999999999999999887 323 3


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE  413 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  413 (498)
                      +..++..+...+...|++++|...++++++..|+++..+..++.++...|
T Consensus        76 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           76 NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            67788889999999999999999999999999998888888887776544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.75  E-value=1.2e-07  Score=74.28  Aligned_cols=117  Identities=9%  Similarity=-0.029  Sum_probs=94.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +...|..+...+...|++++|...|++..+.  .|+           +...+..+..++...|++++|...+++. ...|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~   81 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPK-----------DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP   81 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTT-----------CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence            4556777888888888999999988888764  333           5778888888899999999999988887 3334


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCC
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQ  414 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  414 (498)
                       +...+..+...+...|++++|...++++++..|.+...+..++.++...|+
T Consensus        82 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           82 TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence             677888888889999999999999999999988888888888888877653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.75  E-value=2.4e-07  Score=72.15  Aligned_cols=119  Identities=10%  Similarity=-0.013  Sum_probs=102.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +...+..+...+...|++++|...+++....  .|+           +...+..+..++...|++++|...+++. ...|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   77 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPA-----------NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP   77 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCC-----------CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc
Confidence            3456777888889999999999999998874  233           5788999999999999999999999987 3344


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcc
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWN  416 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  416 (498)
                       +...+..+...+...|++++|...++++++..|+++..+..++.++...|+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence             57888889999999999999999999999999999989999999998888764

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.74  E-value=7.5e-08  Score=89.19  Aligned_cols=140  Identities=10%  Similarity=0.004  Sum_probs=112.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCch---hhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNES---MSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-  359 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  359 (498)
                      +...+..+...+.+.|++++|+..|++..+.  .|+..   ........| ...+|..+..+|.+.|++++|+..+++. 
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3457777888888999999999999998875  23210   000000000 1578999999999999999999999998 


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchH-HHHHHhhh
Q 010881          360 PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV-EKVRRGME  426 (498)
Q Consensus       360 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~  426 (498)
                      .+.| +...|..+..+|...|++++|+..|+++++++|++..++..++.++...|++++| ..+++.|.
T Consensus       224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445 7889999999999999999999999999999999999999999999999999998 44666664

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.73  E-value=2.1e-08  Score=85.27  Aligned_cols=160  Identities=11%  Similarity=-0.030  Sum_probs=110.9

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC------
Q 010881          262 IDMYAKCGCIETACSVFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPG------  332 (498)
Q Consensus       262 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~------  332 (498)
                      +......|+++.+.+.++.-...   ....+..+...+...|++++|...|++....  .|+.      .-...      
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~------~~~~~~~~~~~   82 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHT------EEWDDQILLDK   82 (198)
T ss_dssp             -----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTC------TTCCCHHHHHH
T ss_pred             hhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--Hhcc------cccchhhHHHH
Confidence            33444556666666666544321   3456777888899999999999999999874  2221      00001      


Q ss_pred             -----hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          333 -----VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       333 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                           ...+..+..+|...|++++|...+++. ...| +...+..+..+|...|++++|+..|+++++..|++..++..+
T Consensus        83 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  162 (198)
T 2fbn_A           83 KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  162 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence                 278889999999999999999999988 4345 788899999999999999999999999999999999999999


Q ss_pred             HHHhHhcCCcchHH-HHHHhhhhCC
Q 010881          406 SNIYASTEQWNGVE-KVRRGMEDNE  429 (498)
Q Consensus       406 ~~~~~~~g~~~~a~-~~~~~m~~~~  429 (498)
                      ..++...++.+++. ..+..|...+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          163 ELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            99999998888877 5565554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.72  E-value=3.5e-07  Score=82.95  Aligned_cols=163  Identities=8%  Similarity=-0.078  Sum_probs=122.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCh------hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881          256 ILGTAIIDMYAKCGCIETACSVFDSMPN---RDV------FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI  326 (498)
Q Consensus       256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  326 (498)
                      ..+...+..+...|++++|.+.++...+   ...      ..+..+...+...|++++|+..+++.........      
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~------  149 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI------  149 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS------
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC------
Confidence            3445567778889999999888875432   111      2344456667888999999999999876432211      


Q ss_pred             hCCCC--ChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          327 YGIEP--GVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEPD-----NYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       327 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                         .+  ...+|+.+...|...|++++|...+++.    ...|+     ..++..+...|...|++++|+..++++++..
T Consensus       150 ---~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          150 ---DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             ---CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ---chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence               11  2568999999999999999999999876    11222     2588889999999999999999999998754


Q ss_pred             CC------CchHHHHHHHHhHhcCCcchH-HHHHHhhhh
Q 010881          396 LD------HEGVHVLLSNIYASTEQWNGV-EKVRRGMED  427 (498)
Q Consensus       396 ~~------~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~~  427 (498)
                      +.      ...++..++.+|.+.|++++| ...+++...
T Consensus       227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            32      145688999999999999999 777877654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.72  E-value=4.5e-08  Score=88.25  Aligned_cols=191  Identities=12%  Similarity=-0.002  Sum_probs=123.1

Q ss_pred             HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881          221 AGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLA  297 (498)
Q Consensus       221 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~  297 (498)
                      ..+..+...+...|++++|...++.+.+.. +.+...+..+..+|.+.|++++|...+++..+   .+...+..+..+|.
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            344555555666666666666666666553 44677778888888888888888888887765   35667888888899


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010881          298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV  377 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~  377 (498)
                      ..|++++|...|++..+.  .|+.      ........+..+  ...+...+..    ........+......+ ..+ .
T Consensus        84 ~~g~~~~A~~~~~~al~l--~p~~------~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~  147 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSL--AKEQ------RLNFGDDIPSAL--RIAKKKRWNS----IEERRIHQESELHSYL-TRL-I  147 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHH--HHHT------TCCCCSHHHHHH--HHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-H
T ss_pred             HcCCHHHHHHHHHHHHHh--Cccc------hhhHHHHHHHHH--HHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-H
Confidence            999999999999888764  2221      000011111111  1111111111    2222222333333333 222 3


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc-CCcchHHHHHHhhhhC
Q 010881          378 HGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST-EQWNGVEKVRRGMEDN  428 (498)
Q Consensus       378 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~  428 (498)
                      .|+.++|++.++++++.+|++......+...+.+. +++++|.++|.+..+.
T Consensus       148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            68999999999999999998876777777777766 7789999999888754

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.72  E-value=3.5e-07  Score=82.96  Aligned_cols=212  Identities=7%  Similarity=-0.012  Sum_probs=126.9

Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcch---HHHHHHHHHhCCCchHHHHHHHHhHHC
Q 010881            6 QIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFI---WNTMIRGFAEKNEPIKAFALYKQMLRS   82 (498)
Q Consensus         6 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~A~~~~~~m~~~   82 (498)
                      .....+......|+..+...+...+.-.    ++   .++..-...+...   +...+..+...|++++|..++++..+.
T Consensus        32 ~~~s~~e~g~~~~~~~~l~~i~~~l~~~----~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~  104 (293)
T 3u3w_A           32 SEVSRIESGAVYPSMDILQGIAAKLQIP----II---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKK  104 (293)
T ss_dssp             HHHHHHHTTSCCCCHHHHHHHHHHHTCC----TH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCCCHHHHHHHHHHhCcC----HH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcc
Confidence            3445555555677777777777766554    22   2333222222322   333467788899999999999998773


Q ss_pred             C-CCCCcc----hHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-c----hhHHHHHHHHHHhCCChhhHHHHhhccCCC
Q 010881           83 D-FLPNNY----TFSFILRACADTSCLFVGLICHAQVIRLGWES-Y----DFVLNGLLHLYATCNCMDPARKLFDMSVNR  152 (498)
Q Consensus        83 ~-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  152 (498)
                      . ..|+..    .+..+...+...++++.|...++++++..... +    ..+++.+..+|...|++++|...|++.   
T Consensus       105 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a---  181 (293)
T 3u3w_A          105 EEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQI---  181 (293)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred             ccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence            2 122211    22345556667788999999999988854332 2    225777888888888888888777543   


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCCC-HHHHH
Q 010881          153 DVISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRPN-HAGIV  224 (498)
Q Consensus       153 ~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~  224 (498)
                                           ++.++.....   ...++..+...|.+.|++++|+..+++..+.    +..+. ...|.
T Consensus       182 ---------------------l~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          182 ---------------------LKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             ---------------------HHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             ---------------------HHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence                                 3333333111   2235566666777777777777766665432    21222 44566


Q ss_pred             HHHHHHhccCC-hHHHHHHHHHHHH
Q 010881          225 GALTACAFLGA-LDQGRWIHAYVDR  248 (498)
Q Consensus       225 ~ll~~~~~~~~-~~~a~~~~~~~~~  248 (498)
                      .+..++...|+ +++|...++....
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            66666666663 4677766666543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.71  E-value=4e-08  Score=79.01  Aligned_cols=105  Identities=9%  Similarity=-0.078  Sum_probs=90.0

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +...+..+...+...|++++|...|++....  .|+           +...|..+..+|...|++++|...|++. .+.|
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHY-----------DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--Ccc-----------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            4456777888899999999999999999874  343           6888999999999999999999999998 4445


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                       +...+..+..+|...|++++|+..|+++++..|+++...
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  126 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX  126 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence             677888899999999999999999999999999877553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.70  E-value=6.9e-08  Score=77.61  Aligned_cols=102  Identities=13%  Similarity=-0.043  Sum_probs=88.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +...+..+...+.+.|++++|...|++....  .|+           +...|..+..+|...|++++|...|++. .+.|
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~-----------~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P  101 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFY-----------NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK  101 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC
Confidence            4557778888899999999999999999885  444           6889999999999999999999999998 4455


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                       ++..|..+..+|...|++++|+..|++++++.|+++
T Consensus       102 ~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          102 NDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             SCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence             677888999999999999999999999999998864

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.68  E-value=1.2e-07  Score=78.77  Aligned_cols=121  Identities=7%  Similarity=0.070  Sum_probs=101.7

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010881          296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLN  373 (498)
Q Consensus       296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  373 (498)
                      +...|++++|...+++....  .|+           +...|..+..+|...|++++|...|++. ...| +...+..+..
T Consensus        20 ~~~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~   86 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA--NPQ-----------NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALAT   86 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH--CCS-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHH
T ss_pred             hhhccCHHHHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            34568889999999998875  233           5789999999999999999999999998 3334 6778888888


Q ss_pred             H-HHhcCCH--HHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          374 A-CRVHGDV--DLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       374 ~-~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      . +...|++  ++|...++++++.+|+++..+..++.++...|++++|...+++..+..
T Consensus        87 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           87 VLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            8 7789998  999999999999999999999999999999999999999999988754

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.68  E-value=4.8e-06  Score=75.11  Aligned_cols=223  Identities=8%  Similarity=-0.038  Sum_probs=148.8

Q ss_pred             HHHHHHHhhCCC--C-ChhHHHHHHHHHHhCC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----hcc---CChHH
Q 010881          171 SIARQMFDKMPE--K-NAVSWSAMINGYVQVD--LFKEALEHFNYMQLCGFRPNHAGIVGALTAC----AFL---GALDQ  238 (498)
Q Consensus       171 ~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~----~~~---~~~~~  238 (498)
                      ++|+..++.+..  | +..+|+.-...+...|  ++++++..++.+..... -+...++.--..+    ...   +++++
T Consensus        50 ~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~~  128 (306)
T 3dra_A           50 ERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPYR  128 (306)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred             HHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence            455555555432  2 3444555555555555  67777777777766431 1222333222222    233   56777


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHH--HHHHHHhhCCC---CChhHHHHHHHHHHhcCC------hHHHHH
Q 010881          239 GRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIE--TACSVFDSMPN---RDVFAYTSLISGLANHDQ------SASAIE  307 (498)
Q Consensus       239 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~~~------~~~a~~  307 (498)
                      +..+++.+.+.. +.+..+|+.-.-++.+.|.++  ++++.++++.+   .|...|+.-...+...++      ++++++
T Consensus       129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~  207 (306)
T 3dra_A          129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELN  207 (306)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence            777777777665 666677776666666677766  77777777764   455677666666666665      788999


Q ss_pred             HHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCH
Q 010881          308 LFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA-AKKVVREM-PI----EPDNYVLGALLNACRVHGDV  381 (498)
Q Consensus       308 ~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~  381 (498)
                      .+.++...  .|+           |...|+.+...+.+.|+..+ +..+..++ ..    ..+...+..++..|.+.|+.
T Consensus       208 ~~~~aI~~--~p~-----------n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~  274 (306)
T 3dra_A          208 YVKDKIVK--CPQ-----------NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKY  274 (306)
T ss_dssp             HHHHHHHH--CSS-----------CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHh--CCC-----------CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCH
Confidence            99988874  344           68899999989988887544 55566666 22    23788889999999999999


Q ss_pred             HHHHHHHHHHHh-cCCCCchHHHHHHHH
Q 010881          382 DLGKETVESLVE-RSLDHEGVHVLLSNI  408 (498)
Q Consensus       382 ~~A~~~~~~~~~-~~~~~~~~~~~l~~~  408 (498)
                      ++|.++++.+.+ .+|.....+...+..
T Consensus       275 ~~A~~~~~~l~~~~Dpir~~yW~~~~~~  302 (306)
T 3dra_A          275 NESRTVYDLLKSKYNPIRSNFWDYQISK  302 (306)
T ss_dssp             HHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence            999999999997 789887777655443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.68  E-value=1.5e-06  Score=78.74  Aligned_cols=169  Identities=7%  Similarity=-0.010  Sum_probs=86.7

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCC-c----chHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC---c--hh
Q 010881           55 IWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPN-N----YTFSFILRACADTSCLFVGLICHAQVIRLGWES---Y--DF  124 (498)
Q Consensus        55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~--~~  124 (498)
                      .+...+..+...|++++|++.+++..+.....+ .    ..+..+...+...|++++|...+++.++.....   .  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344455556666666666666666655321100 0    011223333444555555555555554432110   0  22


Q ss_pred             HHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC---ChhHHHHHHHHHHhCCCH
Q 010881          125 VLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEK---NAVSWSAMINGYVQVDLF  201 (498)
Q Consensus       125 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~  201 (498)
                      +++.+...|...|++++|...|++                        |.++++.....   ...+++.+...|...|++
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~k------------------------al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y  212 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQ------------------------ILKQLEALHDNEEFDVKVRYNHAKALYLDSRY  212 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH------------------------HHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHH------------------------HHHHHHhcCccccchHHHHHhHHHHHHHHhhH
Confidence            344444444444444444444432                        22222222221   125777888888889999


Q ss_pred             hHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHhccCChHHH-HHHHHHHH
Q 010881          202 KEALEHFNYMQLCG----FRPN-HAGIVGALTACAFLGALDQG-RWIHAYVD  247 (498)
Q Consensus       202 ~~a~~~~~~m~~~g----~~p~-~~~~~~ll~~~~~~~~~~~a-~~~~~~~~  247 (498)
                      ++|+..+++..+..    .... ..+|..+...+...|++++| ...++...
T Consensus       213 ~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            99998888876431    1111 44566666667777777777 55555543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.66  E-value=2e-07  Score=79.25  Aligned_cols=155  Identities=15%  Similarity=0.025  Sum_probs=105.7

Q ss_pred             HhcCCHHHHHH---HHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHH
Q 010881          266 AKCGCIETACS---VFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVD  341 (498)
Q Consensus       266 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~  341 (498)
                      ...|++++|.+   .+..-......++..+...+...|++++|...+++....-...        +..| ...++..+..
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--------~~~~~~~~~~~~l~~   74 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS--------GDHTAEHRALHQVGM   74 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------CCHHHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc--------CCcHHHHHHHHHHHH
Confidence            34567777777   5544333345567777777888888888888887776521000        1111 3567888888


Q ss_pred             HHhhcCCHHHHHHHHHhC-CC---CC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCc----hHHHHHH
Q 010881          342 LLGRAGMLEAAKKVVREM-PI---EP-D----NYVLGALLNACRVHGDVDLGKETVESLVERS--LDHE----GVHVLLS  406 (498)
Q Consensus       342 ~~~~~g~~~~A~~~~~~~-~~---~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~l~  406 (498)
                      .+...|++++|...+++. ..   .+ +    ...+..+...+...|++++|...++++++..  ..++    .++..++
T Consensus        75 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  154 (203)
T 3gw4_A           75 VERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLG  154 (203)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence            889999999998888876 11   22 2    3457777888899999999999999988643  2222    2356888


Q ss_pred             HHhHhcCCcchHHHHHHhhhhC
Q 010881          407 NIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       407 ~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      .++...|++++|.+.+++..+.
T Consensus       155 ~~~~~~g~~~~A~~~~~~al~~  176 (203)
T 3gw4_A          155 DLAQQEKNLLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCcCHHHHHHHHHHHHHH
Confidence            8999999999999998887653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.65  E-value=2.1e-07  Score=70.32  Aligned_cols=99  Identities=9%  Similarity=-0.033  Sum_probs=89.1

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CchHHHHHHH
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD--HEGVHVLLSN  407 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~  407 (498)
                      +...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.  +...+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            4677888999999999999999999988 3334 6788899999999999999999999999999999  9999999999


Q ss_pred             HhHhc-CCcchHHHHHHhhhhCCc
Q 010881          408 IYAST-EQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       408 ~~~~~-g~~~~a~~~~~~m~~~~~  430 (498)
                      ++... |++++|.+.+++..+...
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhccc
Confidence            99999 999999999999987654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.64  E-value=4.1e-07  Score=74.47  Aligned_cols=98  Identities=11%  Similarity=0.026  Sum_probs=90.4

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +...+..+...+...|++++|+..|++. ...| +...|..+..+|...|++++|+..++++++.+|++...+..++.+|
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            5778899999999999999999999998 4445 7889999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...|++++|...|++..+..
T Consensus        90 ~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhC
Confidence            99999999999999987643

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.63  E-value=1.2e-07  Score=73.25  Aligned_cols=96  Identities=11%  Similarity=-0.072  Sum_probs=85.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      ..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.++..
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34666788899999999999999998 4456 788899999999999999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHhhhhCC
Q 010881          412 TEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       412 ~g~~~~a~~~~~~m~~~~  429 (498)
                      .|++++|...+++..+..
T Consensus        98 ~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            999999999999887643

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.62  E-value=4.2e-07  Score=70.62  Aligned_cols=110  Identities=10%  Similarity=0.001  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-D  364 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~  364 (498)
                      ..|..+...+...|++++|+..|++..+.  .|+           +...|..+..++.+.|++++|...+++. .+.| +
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~   71 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APE-----------DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF   71 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCC-----------ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            45677788899999999999999998875  343           5789999999999999999999999988 4455 6


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCchHHHHHHHHh
Q 010881          365 NYVLGALLNACRVHGDVDLGKETVESLVERS------LDHEGVHVLLSNIY  409 (498)
Q Consensus       365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~  409 (498)
                      ...|..+..++...|++++|...++++++.+      |.+......+..+.
T Consensus        72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~  122 (126)
T 3upv_A           72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS  122 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence            8889999999999999999999999999999      77776666665544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.60  E-value=2.8e-07  Score=81.24  Aligned_cols=183  Identities=8%  Similarity=-0.080  Sum_probs=131.9

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCChhHHHHH-------HHHHHhcCCHHHHHHHHhhCCC--C-------C----------
Q 010881          232 FLGALDQGRWIHAYVDRNGIELDIILGTAI-------IDMYAKCGCIETACSVFDSMPN--R-------D----------  285 (498)
Q Consensus       232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~--~-------~----------  285 (498)
                      ..++...|.+.|..+.+.. +-....|..+       ...+...++..++...+.....  |       +          
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            3567777777777777665 4555666666       4555555555555555554443  1       1          


Q ss_pred             -----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 010881          286 -----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP  360 (498)
Q Consensus       286 -----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  360 (498)
                           ...+-.+...+...|++++|.++|..+...+  |+           +. ....+...+.+.+++++|+..|+...
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~-----------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~  162 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SE-----------HL-VAWMKAVVYGAAERWTDVIDQVKSAG  162 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CH-----------HH-HHHHHHHHHHHTTCHHHHHHHHTTGG
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--Cc-----------hH-HHHHHHHHHHHcCCHHHHHHHHHHhh
Confidence                 1123445677888999999999999886532  33           23 66777789999999999999999873


Q ss_pred             CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          361 IEPD----NYVLGALLNACRVHGDVDLGKETVESLVERS--LD-HEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       361 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ..|+    ...+..+..++...|++++|+..|+++....  |. .+.....++.++.+.|+.++|..+|+++....
T Consensus       163 ~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          163 KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            3333    2367778889999999999999999998533  33 34567889999999999999999999998643

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.60  E-value=3.2e-07  Score=72.37  Aligned_cols=99  Identities=9%  Similarity=-0.056  Sum_probs=90.6

Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                      .+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|+++.++..++.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            36889999999999999999999999987 4345 688899999999999999999999999999999999999999999


Q ss_pred             hHhcCCcchHHHHHHhhhhCC
Q 010881          409 YASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       409 ~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      +...|++++|...+++..+..
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHC
Confidence            999999999999999987654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.60  E-value=2.8e-07  Score=73.39  Aligned_cols=116  Identities=10%  Similarity=-0.034  Sum_probs=92.8

Q ss_pred             HHhhCCCC---ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHH
Q 010881          277 VFDSMPNR---DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAK  353 (498)
Q Consensus       277 ~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  353 (498)
                      .|+.+...   +...+..+...+...|++++|...|++....  .|+           +...|..+..+|...|++++|.
T Consensus         6 ~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~g~~~~A~   72 (142)
T 2xcb_A            6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHY-----------DARYFLGLGACRQSLGLYEQAL   72 (142)
T ss_dssp             ---CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCc-----------cHHHHHHHHHHHHHHhhHHHHH
Confidence            45555543   3345666777889999999999999999874  344           6888999999999999999999


Q ss_pred             HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          354 KVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       354 ~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                      ..|++. ...| +...+..+..++...|++++|...|+++++..|+++......
T Consensus        73 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  126 (142)
T 2xcb_A           73 QSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA  126 (142)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence            999998 4445 677788899999999999999999999999999887655443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.59  E-value=5.8e-07  Score=73.57  Aligned_cols=109  Identities=15%  Similarity=0.021  Sum_probs=93.8

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +...+..+...+...|++++|+..|++..+.  .|+           +...|..+..+|...|++++|+..|++. .+.|
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p   76 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APA-----------NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP   76 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            4456778888899999999999999999885  343           5889999999999999999999999998 4455


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                       +...|..+..+|...|++++|...|++++++.|++...+....
T Consensus        77 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           77 KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence             6888999999999999999999999999999999987655443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.58  E-value=1e-06  Score=67.07  Aligned_cols=110  Identities=12%  Similarity=0.027  Sum_probs=79.0

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-
Q 010881          286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-  363 (498)
Q Consensus       286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-  363 (498)
                      +..+..+...+...|++++|...|++....  .|+           +...+..+..++...|++++|...+++. ...| 
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   70 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKL--DPH-----------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD   70 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC-----------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc
Confidence            345666677777788888888888877764  232           4667777777888888888888888776 3334 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                      +...+..+..++...|++++|.+.++++++.+|+++..+..++.+
T Consensus        71 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           71 WGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            566777777778888888888888888888888777666665544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.58  E-value=2e-07  Score=72.63  Aligned_cols=95  Identities=8%  Similarity=-0.061  Sum_probs=83.8

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------HHH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG-------VHV  403 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~  403 (498)
                      ...+..+...+.+.|++++|+..|++. .+.| +...|..+..+|...|++++|++.++++++++|++..       +|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            567888999999999999999999998 5556 6888999999999999999999999999998877643       567


Q ss_pred             HHHHHhHhcCCcchHHHHHHhhhh
Q 010881          404 LLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       404 ~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .++.++...|++++|++.|++..+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            788889999999999999988765

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.58  E-value=4.9e-07  Score=70.69  Aligned_cols=99  Identities=10%  Similarity=-0.059  Sum_probs=90.8

Q ss_pred             CCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHH
Q 010881          330 EPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSN  407 (498)
Q Consensus       330 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  407 (498)
                      ..+...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|+..++++++..|.+...+..++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            346888999999999999999999999998 5555 78889999999999999999999999999999999999999999


Q ss_pred             HhHhcCCcchHHHHHHhhhhC
Q 010881          408 IYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       408 ~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ++...|++++|.+.+++..+.
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~  113 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHh
Confidence            999999999999999988764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.57  E-value=5e-06  Score=73.30  Aligned_cols=136  Identities=12%  Similarity=0.026  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC--CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC--C
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSMPN--RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP--G  332 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~--~  332 (498)
                      +...+..++...|++++|.++|+.+..  |+......+...+.+.+++++|+..|+.....   |+          |  .
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~---~d----------~~~~  170 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW---PD----------KFLA  170 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC---SC----------HHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc---CC----------cccH
Confidence            445677788899999999999999875  43336666667889999999999999865432   11          1  1


Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC--CCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM--PIE-PD--NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      ...+..+..++...|++++|+..|++.  +-. |.  .........++.+.|+.++|..+|+++...+|+ ......|.
T Consensus       171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            347888899999999999999999998  322 53  346677788899999999999999999999998 65555553

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.54  E-value=4.2e-07  Score=88.39  Aligned_cols=119  Identities=8%  Similarity=-0.014  Sum_probs=100.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010881          293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGA  370 (498)
Q Consensus       293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  370 (498)
                      ...+.+.|++++|...|++..+.  .|+           +..+|..+..+|.+.|++++|...+++. ...| +...|..
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~--~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~   79 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIEL--NPS-----------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYR   79 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHh--CCc-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            34566789999999999999885  344           5889999999999999999999999998 5556 6888999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH--hHhcCCcchHHHHHHh
Q 010881          371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI--YASTEQWNGVEKVRRG  424 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~  424 (498)
                      +..+|...|++++|++.++++++..|++...+..++.+  +.+.|++++|++.+++
T Consensus        80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999999999999888888887  8889999999999983

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.51  E-value=1e-06  Score=67.03  Aligned_cols=98  Identities=12%  Similarity=0.046  Sum_probs=88.4

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      ....+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3567888999999999999999999998 3344 7888899999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...|++++|.+.+++..+.+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHhhHHHHHHHHHHHHHcC
Confidence            99999999999999887643

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.51  E-value=8.8e-07  Score=68.17  Aligned_cols=96  Identities=16%  Similarity=0.137  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA  410 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  410 (498)
                      ...+..+...+...|++++|...++++ ...| +..++..+...+...|++++|...++++++..|.++..+..++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            678888999999999999999999998 3334 68888999999999999999999999999999999999999999999


Q ss_pred             hcCCcchHHHHHHhhhhC
Q 010881          411 STEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       411 ~~g~~~~a~~~~~~m~~~  428 (498)
                      ..|++++|...++++.+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            999999999999988764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=1.2e-06  Score=69.84  Aligned_cols=97  Identities=8%  Similarity=-0.058  Sum_probs=89.8

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      +...+..+...+...|++++|...|++. ...|+    ...|..+...|...|++++|+..++++++..|+++..+..++
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a  106 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS  106 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence            6788899999999999999999999998 66787    678888999999999999999999999999999999999999


Q ss_pred             HHhHhcCCcchHHHHHHhhhhC
Q 010881          407 NIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       407 ~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      .++...|++++|...+++..+.
T Consensus       107 ~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          107 QALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHc
Confidence            9999999999999999988764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.50  E-value=2.6e-07  Score=76.70  Aligned_cols=123  Identities=7%  Similarity=0.033  Sum_probs=86.9

Q ss_pred             hcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH-
Q 010881          267 KCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL-  342 (498)
Q Consensus       267 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~-  342 (498)
                      ..|++++|...++....   .+...|..+...|...|++++|...|++....  .|+           +...+..+..+ 
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~la~~l   88 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGE-----------NAELYAALATVL   88 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCS-----------CHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-----------CHHHHHHHHHHH
Confidence            34555666665555432   35566777777777788888888888887764  233           46777777777 


Q ss_pred             HhhcCCH--HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          343 LGRAGML--EAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       343 ~~~~g~~--~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                      +...|++  ++|...+++. ...| +...+..+...+...|++++|...++++++..|+++...
T Consensus        89 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           89 YYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            7788887  8888888887 3345 577788888888999999999999999999888876433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.49  E-value=1.6e-05  Score=72.47  Aligned_cols=218  Identities=9%  Similarity=-0.037  Sum_probs=153.2

Q ss_pred             HHhCCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc-C-C
Q 010881          195 YVQVDLFKEALEHFNYMQLCGFRPNHA-GIVGALTACAFLG-ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKC-G-C  270 (498)
Q Consensus       195 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~  270 (498)
                      ..+.+..++|++++++++..  .|+.. .++.--..+...+ .++++..+++.+.... +.+..+|+.-..++... + +
T Consensus        64 ~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred             HHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence            33445557888888888875  45444 4555555555666 5888888888888775 66777887776666666 6 7


Q ss_pred             HHHHHHHHhhCCCC---ChhHHHHHHHHHHhcCChH--------HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881          271 IETACSVFDSMPNR---DVFAYTSLISGLANHDQSA--------SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL  339 (498)
Q Consensus       271 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l  339 (498)
                      +++++.+++++.+.   |..+|+.-.-.+.+.|.++        ++++.++++.+..  |.           |...|+..
T Consensus       141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--p~-----------N~SAW~~R  207 (349)
T 3q7a_A          141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--GR-----------NNSAWGWR  207 (349)
T ss_dssp             CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC--TT-----------CHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC--CC-----------CHHHHHHH
Confidence            88999999988863   5567766555555555565        8999999998853  33           68899999


Q ss_pred             HHHHhhcCC-------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHH
Q 010881          340 VDLLGRAGM-------LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDV--------------------DLGKETVES  390 (498)
Q Consensus       340 ~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~  390 (498)
                      ..++.+.++       ++++++.++++ ...| |...|+.+-..+.+.|+.                    ....+....
T Consensus       208 ~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (349)
T 3q7a_A          208 WYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFP  287 (349)
T ss_dssp             HHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CC
T ss_pred             HHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHH
Confidence            888888876       78899998887 4456 778887777767666653                    223333333


Q ss_pred             HHhcC------CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          391 LVERS------LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       391 ~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +....      +..+.+...|+.+|...|+.++|.++++.+.+.
T Consensus       288 ~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          288 MPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             CCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            33222      355566778999999999999999999998643

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=2.6e-06  Score=67.87  Aligned_cols=117  Identities=11%  Similarity=-0.041  Sum_probs=95.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +...+..+...+...|++++|...|++..+.  .|+.        .-....+..+..+|...|++++|...+++. ...|
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~--------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~   96 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATP--------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG   96 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCH--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccc--------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc
Confidence            5667888888899999999999999998764  2220        001678888999999999999999999987 4345


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                       +...+..+..++...|++++|...++++++..|++...+..+..+..+
T Consensus        97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A           97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence             678888899999999999999999999999999988777777665443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.47  E-value=1.4e-06  Score=68.68  Aligned_cols=101  Identities=10%  Similarity=-0.108  Sum_probs=86.6

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC
Q 010881          284 RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE  362 (498)
Q Consensus       284 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  362 (498)
                      .+...|..+...+...|++++|...|.+....  .|+           +...|..+..++...|++++|...+++. ...
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPL-----------VAVYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcC-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            45677888888899999999999999998875  233           5788999999999999999999999988 434


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          363 P-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       363 p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      | +...+..+..++...|++++|...++++++..|+
T Consensus        74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence            5 6788899999999999999999999999998877

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.46  E-value=6.4e-07  Score=71.26  Aligned_cols=96  Identities=9%  Similarity=-0.049  Sum_probs=84.8

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--------H-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD--------N-----YVLGALLNACRVHGDVDLGKETVESLVER----  394 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--------~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----  394 (498)
                      ...+......+.+.|++++|+..|++. .+.|+        .     ..|..+..++...|++++|+..+++++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            455677788899999999999999988 33343        2     38999999999999999999999999999    


Q ss_pred             ---CCCCchHH----HHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          395 ---SLDHEGVH----VLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       395 ---~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                         +|++...|    +..+.++...|++++|+..|++..+.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence               99999999    99999999999999999999998764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.45  E-value=1.7e-06  Score=73.37  Aligned_cols=148  Identities=14%  Similarity=0.092  Sum_probs=86.1

Q ss_pred             cCCHHHHHH---HHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhccCChHH
Q 010881          167 SGQISIARQ---MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLC----GFRP-NHAGIVGALTACAFLGALDQ  238 (498)
Q Consensus       167 ~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~  238 (498)
                      .|++++|.+   .+..-+.....++..+...+...|++++|...+++....    +..| ....+..+...+...|++++
T Consensus         5 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~   84 (203)
T 3gw4_A            5 AHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA   84 (203)
T ss_dssp             --CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             cccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            455566655   443322234455666666666667777776666665541    1111 22345555566666677777


Q ss_pred             HHHHHHHHHHh----CCC--CChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChH
Q 010881          239 GRWIHAYVDRN----GIE--LDIILGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSA  303 (498)
Q Consensus       239 a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~  303 (498)
                      |...+....+.    +..  ....++..+...+...|++++|...+++...     .+    ..++..+...+...|+++
T Consensus        85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  164 (203)
T 3gw4_A           85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL  164 (203)
T ss_dssp             HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence            77666665443    101  1134456667777777777777777766542     12    224566777788888888


Q ss_pred             HHHHHHHHHHH
Q 010881          304 SAIELFMRMQL  314 (498)
Q Consensus       304 ~a~~~~~~m~~  314 (498)
                      +|...+++..+
T Consensus       165 ~A~~~~~~al~  175 (203)
T 3gw4_A          165 EAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.43  E-value=1.4e-06  Score=84.20  Aligned_cols=141  Identities=10%  Similarity=-0.009  Sum_probs=105.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchh---hhhhCCC-CChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 010881          286 VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESM---SEIYGIE-PGVQHYGCLVDLLGRAGMLEAAKKVVREM-P  360 (498)
Q Consensus       286 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  360 (498)
                      ...|..+...+.+.|++++|...|++.++.  .|+...   ....... .....|..+..+|.+.|++++|+..+++. .
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~  345 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG  345 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            456777788888889999999999888774  222000   0000000 01578999999999999999999999998 4


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHH-HHHhhhhC
Q 010881          361 IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEK-VRRGMEDN  428 (498)
Q Consensus       361 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~m~~~  428 (498)
                      +.| +...|..+..+|...|++++|+..|+++++++|++..++..++.++.+.|+++++.+ .+++|..+
T Consensus       346 ~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          346 LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            445 788999999999999999999999999999999999999999999999999998774 56666543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.43  E-value=1.5e-06  Score=70.83  Aligned_cols=96  Identities=13%  Similarity=0.037  Sum_probs=85.3

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CC------------------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PI------------------EP-DNYVLGALLNACRVHGDVDLGKETVESLV  392 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------------------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  392 (498)
                      ...+......+.+.|++++|...|++. ..                  .| +...|..+..+|...|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            567788899999999999999999887 32                  22 34678888999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          393 ERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       393 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +++|+++.++..++.+|...|++++|...+++..+.
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999888764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.41  E-value=1.2e-06  Score=67.41  Aligned_cols=99  Identities=12%  Similarity=0.003  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN  365 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~  365 (498)
                      .+..+...+.+.|++++|...|++..+.  .|+           +...|..+..++...|++++|+..|++. .+.| +.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~P~-----------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~   85 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK--EPE-----------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI   85 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Confidence            4566777889999999999999999884  444           6889999999999999999999999998 5556 67


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      ..+..+..++...|++++|+..++++++.+|++.
T Consensus        86 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           86 AVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            8889999999999999999999999999998764

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.41  E-value=7.3e-06  Score=66.73  Aligned_cols=127  Identities=9%  Similarity=-0.078  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY  265 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  265 (498)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+....+.. +.+..++..+..+|
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence            456667777777888888888888777653 2345666677777777888888888888777765 55667777788888


Q ss_pred             HhcCCHHHHHHHHhhCCC---CChhHHHHHH--HHHHhcCChHHHHHHHHHHHH
Q 010881          266 AKCGCIETACSVFDSMPN---RDVFAYTSLI--SGLANHDQSASAIELFMRMQL  314 (498)
Q Consensus       266 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~  314 (498)
                      ...|++++|...|+++.+   .+...+..+.  ..+...|++++|...+.....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            888888888888877653   2344443333  336677888888888776543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.41  E-value=2.2e-06  Score=66.51  Aligned_cols=97  Identities=8%  Similarity=-0.053  Sum_probs=88.3

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|+++..+..++.++
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            4678888999999999999999999988 3334 7888899999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhC
Q 010881          410 ASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~  428 (498)
                      ...|++++|...+++..+.
T Consensus        91 ~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhc
Confidence            9999999999999988764

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.40  E-value=3.2e-06  Score=63.54  Aligned_cols=102  Identities=14%  Similarity=-0.013  Sum_probs=85.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +...+..+...+...|++++|...|++..+.  .|+           +...+..+..++...|++++|...+++. ...|
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPE-----------ESKYWLMKGKALYNLERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            4566777888888999999999999998875  233           5778889999999999999999999987 3334


Q ss_pred             ---CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCc
Q 010881          364 ---DNYVLGALLNACRVH-GDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       364 ---~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~  399 (498)
                         +...+..+...+... |++++|.+.+++++...|+++
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence               578888899999999 999999999999999988764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.38  E-value=1.3e-06  Score=68.00  Aligned_cols=99  Identities=11%  Similarity=0.062  Sum_probs=83.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC--
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP--  363 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p--  363 (498)
                      .++..+...+.+.|++++|+..|++.++.  .|+           +...|..+..+|...|++++|++.+++. .+.|  
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~-----------~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~   75 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPS-----------NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRET   75 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCccc
Confidence            45777888999999999999999999874  455           5889999999999999999999999887 2222  


Q ss_pred             --C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881          364 --D----NYVLGALLNACRVHGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       364 --~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  398 (498)
                        +    ..+|..+..++...|++++|++.|+++++..|++
T Consensus        76 ~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  116 (127)
T 4gcn_A           76 RADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDP  116 (127)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCH
T ss_pred             chhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCH
Confidence              2    3467778889999999999999999999988764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.36  E-value=1.6e-06  Score=67.50  Aligned_cols=93  Identities=13%  Similarity=0.065  Sum_probs=80.7

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---chHHHHHHH
Q 010881          336 YGCLVDLLGRAGMLEAAKKVVREM-PIEPD-N---YVLGALLNACRVHGDVDLGKETVESLVERSLDH---EGVHVLLSN  407 (498)
Q Consensus       336 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~  407 (498)
                      +..+...+...|++++|...|++. ...|+ .   ..+..+..++...|++++|...++++++..|++   +.++..++.
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            445678888999999999999988 33343 2   477788889999999999999999999999998   677999999


Q ss_pred             HhHhcCCcchHHHHHHhhhhC
Q 010881          408 IYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       408 ~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ++...|++++|...++++.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999998764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.35  E-value=3.6e-06  Score=78.81  Aligned_cols=132  Identities=10%  Similarity=0.043  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc----hhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNE----SMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI  361 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  361 (498)
                      .+..+...+.+.|++++|+..|++.++.-  |..    .........| +..+|..+..+|.+.|++++|+..+++. ..
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            35555666667777777777777665410  000    0000000112 4688999999999999999999999998 66


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHH
Q 010881          362 EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKV  421 (498)
Q Consensus       362 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  421 (498)
                      .| +...|..+..+|...|++++|+..|++++++.|++...+..+..++...++.+++.+.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66 6888999999999999999999999999999999999999999999988888877653

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.34  E-value=9.6e-06  Score=62.82  Aligned_cols=111  Identities=6%  Similarity=-0.011  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PI----  361 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----  361 (498)
                      ..|..+...+...|++++|...|++.....  |+           +...+..+..++...|++++|...+++. ..    
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~   71 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD--PT-----------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN   71 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--Cc-----------cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc
Confidence            456777788888999999999999887752  33           5778888899999999999999998887 22    


Q ss_pred             CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          362 EPD----NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       362 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      .++    ..++..+...+...|++++|.+.++++++..| ++.....+..+...
T Consensus        72 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~  124 (131)
T 1elr_A           72 REDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI  124 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence            222    67788888889999999999999999999888 45555566555443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.34  E-value=6.1e-06  Score=79.26  Aligned_cols=161  Identities=6%  Similarity=-0.105  Sum_probs=101.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhhCCC-----CCh----hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC
Q 010881          258 GTAIIDMYAKCGCIETACSVFDSMPN-----RDV----FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG  328 (498)
Q Consensus       258 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~  328 (498)
                      +..+...|...|++++|.+.+..+.+     ++.    .+.+.+...+...|+.++|..++.+........        +
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------~  129 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKRE--------K  129 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHS--------S
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh--------C
Confidence            45566667777777777776666543     111    122333333445677777777777765421000        1


Q ss_pred             CCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---C
Q 010881          329 IEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-----P--IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERS---L  396 (498)
Q Consensus       329 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~--~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~  396 (498)
                      ..+ -..++..+...|...|++++|..++++.     +  -++ ...++..++..|...|++++|..++++++...   +
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~  209 (434)
T 4b4t_Q          130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY  209 (434)
T ss_dssp             CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC
Confidence            111 2566777888888888888888888766     1  122 24567777788888888888888888887643   2


Q ss_pred             CCc----hHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          397 DHE----GVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       397 ~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      +++    ..+..++..+...|++++|...+....
T Consensus       210 ~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          210 CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            221    335566777778888888887776664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.34  E-value=7.9e-06  Score=63.40  Aligned_cols=108  Identities=13%  Similarity=0.036  Sum_probs=86.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---
Q 010881          289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD---  364 (498)
Q Consensus       289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---  364 (498)
                      +..+...+...|++++|...|+++.+.  .|+.        ......+..+..++...|++++|...|++. ...|+   
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~--------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~   74 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLEL--YPNG--------VYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK   74 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSS--------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH--CCCC--------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc
Confidence            445667788999999999999999875  2331        011257888999999999999999999988 33443   


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          365 -NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       365 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                       ...+..+..++...|++++|...++++++..|+++.......
T Consensus        75 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~  117 (129)
T 2xev_A           75 AAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQE  117 (129)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHH
Confidence             667888889999999999999999999999999875544443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.33  E-value=2.2e-06  Score=69.86  Aligned_cols=122  Identities=15%  Similarity=0.037  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHc------CCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLE------GVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-P  360 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  360 (498)
                      .+......+.+.|++++|+..|.+.+..      .-.|+...... .-+.+...|..+..+|.+.|++++|+..+++. .
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVE-LDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHH-HHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHH-HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            4455555666667777777666666553      00111000000 00114578999999999999999999999988 4


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-hHHHHHHHHhH
Q 010881          361 IEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE-GVHVLLSNIYA  410 (498)
Q Consensus       361 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~  410 (498)
                      +.| +...|..+..+|...|++++|...|+++++++|+++ .....+..+..
T Consensus        92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            455 688999999999999999999999999999999987 44445544433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.32  E-value=5.3e-07  Score=68.04  Aligned_cols=94  Identities=7%  Similarity=-0.038  Sum_probs=82.4

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------chHHH
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH------EGVHV  403 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~  403 (498)
                      +...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|++.++++++..|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4678888999999999999999999998 4445 78889999999999999999999999999999998      77788


Q ss_pred             HHHHHhHhcCCcchHHHHHHhh
Q 010881          404 LLSNIYASTEQWNGVEKVRRGM  425 (498)
Q Consensus       404 ~l~~~~~~~g~~~~a~~~~~~m  425 (498)
                      .++.++...|++++|...++++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHHhHhhhHhHHHHh
Confidence            8899999999888887776554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.31  E-value=2.5e-06  Score=66.22  Aligned_cols=96  Identities=13%  Similarity=0.083  Sum_probs=85.4

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chHHH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDH-------EGVHV  403 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~  403 (498)
                      ...+..+...+...|++++|...|++. ...| +...+..+...+...|++++|...++++++..|.+       ..++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            567888999999999999999999988 3334 78888899999999999999999999999988766       77888


Q ss_pred             HHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          404 LLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       404 ~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      .++.++...|++++|.+.+++..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999999999999999999988763

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.31  E-value=9.7e-05  Score=67.01  Aligned_cols=218  Identities=9%  Similarity=-0.064  Sum_probs=152.5

Q ss_pred             HhCCCHh-HHHHHHHHHHHcCCCCCHHH-HHHHHHHHhccCC----------hHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          196 VQVDLFK-EALEHFNYMQLCGFRPNHAG-IVGALTACAFLGA----------LDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       196 ~~~g~~~-~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      .+.|.++ +|+.+++.+...  .|+..| ++.--..+...+.          ++++..+++.+.... +.+..+|+.-.-
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w  116 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW  116 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3455554 778888888764  455444 3322222222221          567888888888775 678888887777


Q ss_pred             HHHhcC--CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC-hHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHH
Q 010881          264 MYAKCG--CIETACSVFDSMPN---RDVFAYTSLISGLANHDQ-SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYG  337 (498)
Q Consensus       264 ~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~  337 (498)
                      ++...+  .++++..+++.+.+   +|..+|+.-.-.+...|. ++++++.+.++.+..  |+           |...|+
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~--p~-----------N~SAW~  183 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--FS-----------NYSSWH  183 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--SC-----------CHHHHH
T ss_pred             HHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC--CC-----------CHHHHH
Confidence            777777  48999999998875   577788887777788888 589999999998853  33           678888


Q ss_pred             HHHHHHhhc--------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHH
Q 010881          338 CLVDLLGRA--------------GMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH-----------GDVDLGKETVES  390 (498)
Q Consensus       338 ~l~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~  390 (498)
                      .....+.+.              +.++++++.+.+. ...| |...|+.+-..+...           +.++++++.+++
T Consensus       184 ~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~e  263 (331)
T 3dss_A          184 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKE  263 (331)
T ss_dssp             HHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHH
Confidence            777776655              4578899998887 4456 777776655555444           457899999999


Q ss_pred             HHhcCCCCchHHHHHHH---HhHhcCCcchHHHHHHhhhhCC
Q 010881          391 LVERSLDHEGVHVLLSN---IYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       391 ~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      +++..|++.-.+..++.   .....|..+++...+.++.+.+
T Consensus       264 lle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D  305 (331)
T 3dss_A          264 LQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD  305 (331)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence            99999998544433332   2234577778888888887644

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.30  E-value=5.3e-07  Score=69.03  Aligned_cols=84  Identities=10%  Similarity=0.054  Sum_probs=70.4

Q ss_pred             hcCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHH
Q 010881          345 RAGMLEAAKKVVREM-PI---EP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVE  419 (498)
Q Consensus       345 ~~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  419 (498)
                      ..|++++|+..|++. ..   .| +...+..+...|...|++++|+..++++++..|+++.++..++.++...|++++|.
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            467888999999888 55   35 56778888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhC
Q 010881          420 KVRRGMEDN  428 (498)
Q Consensus       420 ~~~~~m~~~  428 (498)
                      ..+++..+.
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999888754

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.27  E-value=1.2e-06  Score=67.03  Aligned_cols=94  Identities=15%  Similarity=0.114  Sum_probs=76.3

Q ss_pred             hcCChHHHHHHHHHHHHcCC-CCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010881          298 NHDQSASAIELFMRMQLEGV-VPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNA  374 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  374 (498)
                      ..|++++|+..|++..+.+. .|+           +...+..+..+|...|++++|...|++. ...| +...+..+..+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   70 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD-----------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMV   70 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            46888999999999987531 122           5788999999999999999999999998 4445 68888999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          375 CRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       375 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                      +...|++++|+..++++++..|+++...
T Consensus        71 ~~~~g~~~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           71 LYNLGRYEQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            9999999999999999999999987554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.27  E-value=9.9e-06  Score=74.84  Aligned_cols=129  Identities=12%  Similarity=-0.068  Sum_probs=84.7

Q ss_pred             hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 010881          185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPN--------------HAGIVGALTACAFLGALDQGRWIHAYVDRNG  250 (498)
Q Consensus       185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  250 (498)
                      ...+..+...+.+.|++++|+..|++..+......              ...+..+..++...|++++|...++.+.+..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34555666666666777777777766665421111              3566666777777777777777777777664


Q ss_pred             CCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 010881          251 IELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASA-IELFMRMQL  314 (498)
Q Consensus       251 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~  314 (498)
                       +.+...+..+..+|...|++++|...|+++.+   .+...+..+...+...|+.++| ...|+.|..
T Consensus       227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             55667777777777777777777777776653   3456677777777777777777 345555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.27  E-value=5.9e-05  Score=74.68  Aligned_cols=168  Identities=7%  Similarity=-0.089  Sum_probs=128.9

Q ss_pred             hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC----------HHHHHHHHhhCCC---CChhHHHHHHHHHHhcC--
Q 010881          236 LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGC----------IETACSVFDSMPN---RDVFAYTSLISGLANHD--  300 (498)
Q Consensus       236 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--  300 (498)
                      .++|...++.+.... +-+..+|+.--.++...|+          ++++...++.+.+   ++..+|+.-.-.+.+.+  
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~  123 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP  123 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccc
Confidence            345566666666654 4445555555555555555          7888888887764   46667777777777888  


Q ss_pred             ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010881          301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG-MLEAAKKVVREM-PIEP-DNYVLGALLNACRV  377 (498)
Q Consensus       301 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  377 (498)
                      ++++++..++++.+.  .|+           +..+|+.-..++.+.| .++++++.++++ ...| |...|+.....+..
T Consensus       124 ~~~~el~~~~k~l~~--d~~-----------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          124 NWARELELCARFLEA--DER-----------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             CHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhh--ccc-----------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence            669999999999885  333           6788988888888888 899999999988 6566 78888887777665


Q ss_pred             c--------------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcch
Q 010881          378 H--------------GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNG  417 (498)
Q Consensus       378 ~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  417 (498)
                      .              +.++++++.+++++..+|++..+|..+...+.+.++.++
T Consensus       191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          191 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             hcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence            3              567999999999999999999999999999999988665

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.27  E-value=3.9e-06  Score=75.43  Aligned_cols=98  Identities=8%  Similarity=-0.082  Sum_probs=89.5

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +...+..+...+...|++++|...|++. ...| +...|..+...|...|++++|+..++++++.+|++..++..++.+|
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4678888999999999999999999988 4455 7888999999999999999999999999999999999999999999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ...|++++|...+++..+.+
T Consensus        83 ~~~g~~~~A~~~~~~al~l~  102 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLA  102 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC
Confidence            99999999999999887643

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.26  E-value=1.4e-06  Score=80.60  Aligned_cols=140  Identities=11%  Similarity=0.052  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC------CCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG------IEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-  359 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  359 (498)
                      ..+..+...+.+.|++++|...|++....  .|+.......+      .......|..+..+|.+.|++++|+..+++. 
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al  257 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL  257 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34556666777788888888888887663  22210000000      0000136777888888888888888888877 


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh-HhcCCcchHHHHHHhhhhC
Q 010881          360 PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY-ASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       360 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~  428 (498)
                      ...| +...|..+..+|...|++++|+..|++++++.|++..++..+..+. ...+..+++..+|++|.+.
T Consensus       258 ~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          258 TEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            4345 6778888888888888888888888888888888877777777663 3446667777777777544

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.26  E-value=2.5e-05  Score=74.94  Aligned_cols=52  Identities=15%  Similarity=0.079  Sum_probs=28.6

Q ss_pred             HHHHccCCHHHHHHHHhhCCCC-----C---------------hhHHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 010881          162 NGYAKSGQISIARQMFDKMPEK-----N---------------AVSWSAMINGYVQVDLFKEALEHFNYMQL  213 (498)
Q Consensus       162 ~~~~~~~~~~~A~~~~~~~~~~-----~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  213 (498)
                      ..+.+.|++++|++.|..+.+.     +               ..++..++..|...|++++|.+++..+..
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3455566666666666655321     0               01245556666666666666666665543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.25  E-value=2e-06  Score=69.62  Aligned_cols=133  Identities=12%  Similarity=-0.017  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM----PIEP  363 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p  363 (498)
                      ++..+...+...|++++|...+++..+......       .......++..+...+...|++++|...+++.    .-.+
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~   83 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-------DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK   83 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence            556666777778888888888877765310000       00001357788888999999999999998876    1111


Q ss_pred             C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          364 D----NYVLGALLNACRVHGDVDLGKETVESLVERSLD------HEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       364 ~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      +    ..++..+...+...|++++|.+.++++++..+.      ....+..++.++...|++++|.+.+++..+
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            2    456777888899999999999999998875321      234577889999999999999999988764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.25  E-value=5.5e-06  Score=80.07  Aligned_cols=127  Identities=9%  Similarity=0.024  Sum_probs=102.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHcC---CCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CC
Q 010881          295 GLANHDQSASAIELFMRMQLEG---VVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM---------PI  361 (498)
Q Consensus       295 ~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~  361 (498)
                      .+..+|++++|+.++++.++..   +.|+         .| ...+++.|..+|...|++++|..++++.         +-
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~---------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~  388 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADT---------NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN  388 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTT---------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC
Confidence            4667899999999998887632   1222         22 4678999999999999999999998876         23


Q ss_pred             CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchH---HHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          362 EP-DNYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEGV---HVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       362 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      .| ...+++.|...|...|++++|+.+++++++     ++|+++.+   ...+..++...+++++|..+++++++...
T Consensus       389 Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~  466 (490)
T 3n71_A          389 NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAAL  466 (490)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34 356789999999999999999999999986     68888755   44677888899999999999999987543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.23  E-value=0.00019  Score=65.51  Aligned_cols=225  Identities=11%  Similarity=0.013  Sum_probs=134.1

Q ss_pred             CCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCC-CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc-C-ChHHHHH
Q 010881          168 GQISIARQMFDKMPE--K-NAVSWSAMINGYVQVD-LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFL-G-ALDQGRW  241 (498)
Q Consensus       168 ~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-~-~~~~a~~  241 (498)
                      +..++|+++++++..  | +..+|+.--..+...| .+++++..++.+.... +-+...++.-...+... + +++++..
T Consensus        68 e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~  146 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE  146 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence            333455555555542  2 3444555444555555 3666666666666542 22333444433333333 4 5666666


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCCHH--------HHHHHHhhCCC---CChhHHHHHHHHHHhcCC-------hH
Q 010881          242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIE--------TACSVFDSMPN---RDVFAYTSLISGLANHDQ-------SA  303 (498)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-------~~  303 (498)
                      +++.+.+.. +.|..+|+.-.-++.+.|.++        ++++.++++.+   .|..+|+.....+.+.++       ++
T Consensus       147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~  225 (349)
T 3q7a_A          147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQ  225 (349)
T ss_dssp             HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHH
Confidence            666666543 445555554444443333333        67777766654   466677777777666665       67


Q ss_pred             HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH--------------------HHHHHHHHhC-CC-
Q 010881          304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML--------------------EAAKKVVREM-PI-  361 (498)
Q Consensus       304 ~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-  361 (498)
                      ++++.+.++...  .|+           |...|+.+-..+.+.|+.                    .+..+...++ +. 
T Consensus       226 eELe~~~~aI~~--~P~-----------n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (349)
T 3q7a_A          226 DELIYILKSIHL--IPH-----------NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP  292 (349)
T ss_dssp             HHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred             HHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence            888888888874  444           688888887777776653                    3444444444 22 


Q ss_pred             ------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCchHHHHHHH
Q 010881          362 ------EPDNYVLGALLNACRVHGDVDLGKETVESLV-ERSLDHEGVHVLLSN  407 (498)
Q Consensus       362 ------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~l~~  407 (498)
                            .++...+..++..|...|+.++|.++++.+. +.+|-....+...+.
T Consensus       293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence                  3578888999999999999999999999987 456766555554443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.20  E-value=2.5e-05  Score=65.93  Aligned_cols=96  Identities=5%  Similarity=-0.157  Sum_probs=85.2

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-D----------------NYVLGALLNACRVHGDVDLGKETVESLVER  394 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  394 (498)
                      ...+..+...+...|++++|...|++. ...| +                ...|..+..+|...|++++|+..++++++.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            566778889999999999999999987 3223 2                278888999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      .|++..++..++.+|...|++++|...|++..+.
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  151 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  151 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888754

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.20  E-value=1.3e-05  Score=77.97  Aligned_cols=84  Identities=7%  Similarity=-0.077  Sum_probs=45.3

Q ss_pred             HhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHH
Q 010881          230 CAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAI  306 (498)
Q Consensus       230 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~  306 (498)
                      +...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...+++..+   .+..+|..+..+|...|++++|.
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            344566666666666655553 33455555555555555555555555554432   23445555555555555555555


Q ss_pred             HHHHHHHH
Q 010881          307 ELFMRMQL  314 (498)
Q Consensus       307 ~~~~~m~~  314 (498)
                      ..|++..+
T Consensus        95 ~~~~~al~  102 (477)
T 1wao_1           95 RDYETVVK  102 (477)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.15  E-value=4.8e-06  Score=66.23  Aligned_cols=116  Identities=11%  Similarity=-0.074  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CC----
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PI----  361 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----  361 (498)
                      .+......+...|++++|+..|++.++.  .|+..........| +...|..+..++.+.|++++|+..+++. .+    
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            4455667788899999999999999874  33300000000000 2348999999999999999999998887 55    


Q ss_pred             ---CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          362 ---EPD-NYVL----GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       362 ---~p~-~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                         .|+ ...|    .....++...|++++|+..|++++++.|++......+
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~  142 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGK  142 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence               884 5677    8899999999999999999999999999887554433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.14  E-value=0.00023  Score=64.63  Aligned_cols=243  Identities=11%  Similarity=-0.008  Sum_probs=126.8

Q ss_pred             HhCCChh-hHHHHhhccCCCCh---hhHHHHHHHHHccCC----------HHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881          134 ATCNCMD-PARKLFDMSVNRDV---ISWTSLINGYAKSGQ----------ISIARQMFDKMPE---KNAVSWSAMINGYV  196 (498)
Q Consensus       134 ~~~g~~~-~a~~~~~~~~~~~~---~~~~~li~~~~~~~~----------~~~A~~~~~~~~~---~~~~~~~~li~~~~  196 (498)
                      .+.|.++ +|+++++.+...|+   .+|+.--..+...+.          +++++.+++.+..   .+..+|+.-...+.
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~  119 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS  119 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence            3456555 67888877664443   334432222222221          3444444444431   24444444444444


Q ss_pred             hCC--CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHH
Q 010881          197 QVD--LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA-LDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIET  273 (498)
Q Consensus       197 ~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  273 (498)
                      +.+  .+++++.+++++.+.. +-|...|+.-.-.+...|. ++++...+..+.+.. +.|...|+.....+.+.+....
T Consensus       120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~  197 (331)
T 3dss_A          120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPD  197 (331)
T ss_dssp             HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC-
T ss_pred             ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccc
Confidence            444  2455555555555432 2233334333333333443 244444444444443 3344444433333222211000


Q ss_pred             HHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc-------
Q 010881          274 ACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA-------  346 (498)
Q Consensus       274 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~-------  346 (498)
                      +         ++        .+-...+.++++++.+.+....  .|+           |...|+.+-..+.+.       
T Consensus       198 ~---------~~--------~~~~~~~~~~eEle~~~~ai~~--~P~-----------d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          198 S---------GP--------QGRLPENVLLKELELVQNAFFT--DPN-----------DQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             ----------------------CCCHHHHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHSSSCGGGCC
T ss_pred             c---------cc--------ccccchHHHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHhccCccccc
Confidence            0         00        0000014467888888888874  454           678887766666555       


Q ss_pred             ----CCHHHHHHHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          347 ----GMLEAAKKVVREM-PIEPDNYVLGALLN-----ACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       347 ----g~~~~A~~~~~~~-~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                          +.++++++.++++ ...|+. .|..+..     +....+..++....+.++++++|....-|..+...+
T Consensus       248 ~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence                4578899999888 556753 3332222     222467788999999999999999887777665444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.07  E-value=1.8e-05  Score=56.89  Aligned_cols=82  Identities=17%  Similarity=0.139  Sum_probs=71.0

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      +...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            4677888899999999999999999987 3334 6778888999999999999999999999999999998888888887


Q ss_pred             HhcC
Q 010881          410 ASTE  413 (498)
Q Consensus       410 ~~~g  413 (498)
                      ...|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            7654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.05  E-value=1e-05  Score=65.38  Aligned_cols=133  Identities=16%  Similarity=-0.013  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC-----CC----hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhh
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSMPN-----RD----VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIY  327 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~  327 (498)
                      ++..+...|...|++++|...+++..+     .+    ..++..+...+...|++++|...+++..+.....+       
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-------   83 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-------   83 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-------
Confidence            445555666666666666666665542     11    13667777788888888888888888765310000       


Q ss_pred             CCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881          328 GIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       328 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  396 (498)
                      .......++..+..++...|++++|...+++.       +..+ ...++..+...+...|++++|.+.++++++...
T Consensus        84 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            00112567888899999999999999998876       1111 245677788889999999999999999887543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.04  E-value=2.5e-05  Score=73.10  Aligned_cols=96  Identities=6%  Similarity=-0.030  Sum_probs=85.6

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-C----------------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-P----------------IEP-DNYVLGALLNACRVHGDVDLGKETVESLVER  394 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----------------~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  394 (498)
                      ...+..+...+.+.|++++|...|++. .                ..| +..+|..+..+|.+.|++++|++.++++++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            355777889999999999999999877 3                444 4678888999999999999999999999999


Q ss_pred             CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          395 SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       395 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +|++..++..++.+|...|++++|.+.+++..+.
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l  336 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  336 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999988764

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.02  E-value=1.3e-05  Score=60.79  Aligned_cols=78  Identities=9%  Similarity=0.014  Sum_probs=68.3

Q ss_pred             HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          351 AAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       351 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +|...|++. ...| +...+..+...|...|++++|+..++++++.+|++...+..++.+|...|++++|...+++..+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456666666 4455 68888899999999999999999999999999999999999999999999999999999988764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.01  E-value=2.5e-05  Score=75.45  Aligned_cols=97  Identities=5%  Similarity=-0.149  Sum_probs=88.0

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD----------------NYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                      ...+..+...+.+.|++++|...|++. .+.|+                ...|..+..+|.+.|++++|+..++++++++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            567888999999999999999999988 33332                5788999999999999999999999999999


Q ss_pred             CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      |++..++..++.+|...|++++|+..|++..+..
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~  381 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  381 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999998754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.98  E-value=2.9e-05  Score=57.24  Aligned_cols=65  Identities=18%  Similarity=0.147  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +...+..+...|...|++++|+..|+++++.+|+++.++..++.+|...|++++|.+.+++..+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            57778888888889999999999999999999998888999999999999999999998887653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.95  E-value=1.6e-05  Score=73.51  Aligned_cols=97  Identities=9%  Similarity=-0.054  Sum_probs=85.7

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNY------------------VLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                      ...+..+...+.+.|++++|...|++. ...|+..                  .|..+..+|.+.|++++|+..++++++
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456777888999999999999999987 5556543                  788899999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       394 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      .+|++..++..++.+|...|++++|...|++..+..
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~  294 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA  294 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            999999999999999999999999999999887654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.87  E-value=8.6e-06  Score=64.64  Aligned_cols=86  Identities=12%  Similarity=0.070  Sum_probs=73.9

Q ss_pred             hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          344 GRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDV----------DLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       344 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      .+.+.+++|...+++. ...| +...|..+..++...+++          ++|+..|+++++++|+...+|..++.+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4567788999999887 4456 788888888888887764          599999999999999999999999999998


Q ss_pred             cC-----------CcchHHHHHHhhhhCC
Q 010881          412 TE-----------QWNGVEKVRRGMEDNE  429 (498)
Q Consensus       412 ~g-----------~~~~a~~~~~~m~~~~  429 (498)
                      .|           ++++|++.|++..+..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            75           8999999999998754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.81  E-value=0.00013  Score=70.48  Aligned_cols=116  Identities=7%  Similarity=-0.022  Sum_probs=89.3

Q ss_pred             HHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---HH
Q 010881          341 DLLGRAGMLEAAKKVVREM---------PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEG---VH  402 (498)
Q Consensus       341 ~~~~~~g~~~~A~~~~~~~---------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~  402 (498)
                      ..+...|++++|+.++++.         +-.| -..+++.|...|...|++++|+.+++++++     .+|+++.   ++
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l  396 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV  396 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            3466889999999998776         2233 256789999999999999999999999986     5677664   47


Q ss_pred             HHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHh
Q 010881          403 VLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKS  474 (498)
Q Consensus       403 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  474 (498)
                      ..|+.+|..+|++++|..++++..+.-.. .                 -...||...++...+......+++
T Consensus       397 ~nLa~~~~~~G~~~eA~~~~~~Al~i~~~-~-----------------lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          397 MRAGLTNWHAGHIEVGHGMICKAYAILLV-T-----------------HGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-H-----------------TCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHH-H-----------------hCCCChHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999998763221 0                 125788888888777766654443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.79  E-value=2.6e-05  Score=61.91  Aligned_cols=91  Identities=13%  Similarity=0.052  Sum_probs=76.7

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH----------HHHHHHHHhC-CCCC-C
Q 010881          297 ANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML----------EAAKKVVREM-PIEP-D  364 (498)
Q Consensus       297 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~-~~~p-~  364 (498)
                      .+.+.+++|...+++..+.  .|+           +...|..+..++...+++          ++|+..|++. .+.| +
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--~P~-----------~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~   79 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--NPL-----------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKK   79 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHhHHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCc
Confidence            4556788999999999885  454           689999999999888765          5999999998 6667 6


Q ss_pred             HHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCch
Q 010881          365 NYVLGALLNACRVHG-----------DVDLGKETVESLVERSLDHEG  400 (498)
Q Consensus       365 ~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~  400 (498)
                      ...|..+..+|...|           ++++|++.|+++++++|++..
T Consensus        80 ~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~  126 (158)
T 1zu2_A           80 DEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHH
Confidence            789999999998874           899999999999999999863

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.74  E-value=8.5e-05  Score=56.17  Aligned_cols=82  Identities=15%  Similarity=0.061  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 010881          304 SAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDV  381 (498)
Q Consensus       304 ~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~  381 (498)
                      +|+..|++..+.  .|+           +...+..+..+|...|++++|...|++. ...| +...|..+..+|...|++
T Consensus         3 ~a~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~   69 (115)
T 2kat_A            3 AITERLEAMLAQ--GTD-----------NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDR   69 (115)
T ss_dssp             CHHHHHHHHHTT--TCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHh--CCC-----------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH
Confidence            466777777663  344           5889999999999999999999999998 4445 678899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 010881          382 DLGKETVESLVERSLDH  398 (498)
Q Consensus       382 ~~A~~~~~~~~~~~~~~  398 (498)
                      ++|...|+++++..|..
T Consensus        70 ~~A~~~~~~al~~~~~~   86 (115)
T 2kat_A           70 AGARQAWESGLAAAQSR   86 (115)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccc
Confidence            99999999999987753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.73  E-value=0.00017  Score=52.04  Aligned_cols=68  Identities=12%  Similarity=-0.058  Sum_probs=59.7

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          363 PDNYVLGALLNACRVHGD---VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       363 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      .++..+..+..++...++   .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+...
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            477788888888765554   79999999999999999999999999999999999999999999987654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.72  E-value=0.00034  Score=66.50  Aligned_cols=117  Identities=16%  Similarity=0.098  Sum_probs=92.1

Q ss_pred             HHHHHhhcCCHHHHHHHHHhC------CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---
Q 010881          339 LVDLLGRAGMLEAAKKVVREM------PIEPD----NYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEG---  400 (498)
Q Consensus       339 l~~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---  400 (498)
                      .+.-+.+.|++++|+.++++.      -+.|+    ..+++.+..+|...|++++|+.+++++++     .+|+++.   
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            355667889999999999876      12232    55788999999999999999999999986     4666664   


Q ss_pred             HHHHHHHHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHH
Q 010881          401 VHVLLSNIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLK  473 (498)
Q Consensus       401 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  473 (498)
                      .+..|+.+|..+|++++|..++++..+.-..                  .-...||...+++..|.+....|+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence            4778999999999999999999998763211                  112579999999988888777665

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.69  E-value=0.00044  Score=54.23  Aligned_cols=114  Identities=6%  Similarity=-0.111  Sum_probs=94.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 010881          299 HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV-  377 (498)
Q Consensus       299 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-  377 (498)
                      .+++++|+.+|++..+.|               +....  |...|...+.+++|.+.|++.--.-+...+..|...|.. 
T Consensus         8 ~~d~~~A~~~~~~aa~~g---------------~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G   70 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELN---------------EMFGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENG   70 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTT---------------CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHHcCC---------------CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcC
Confidence            346789999999999876               22333  888888889999999999988212577888888888888 


Q ss_pred             ---cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh----cCCcchHHHHHHhhhhCCcc
Q 010881          378 ---HGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS----TEQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       378 ---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~  431 (498)
                         .+++++|.++|+++.+.  .++..+..|+.+|..    .+++++|.+.+++..+.|..
T Consensus        71 ~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           71 KYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             CCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence               88999999999999987  456789999999999    89999999999999887753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.68  E-value=0.00013  Score=54.58  Aligned_cols=67  Identities=4%  Similarity=-0.166  Sum_probs=61.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          363 PDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       363 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ++...+..+...+...|++++|++.|+++++..|+++..+..++.++...|++++|++.+++..+..
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            3566788889999999999999999999999999999999999999999999999999999987654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.53  E-value=0.00019  Score=52.37  Aligned_cols=80  Identities=19%  Similarity=0.140  Sum_probs=65.1

Q ss_pred             HHHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881          339 LVDLLGRAGMLEAAKKVVREM-PIEP-DNY-VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW  415 (498)
Q Consensus       339 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  415 (498)
                      ....+...|++++|...+++. ...| +.. .+..+..+|...|++++|++.|+++++.+|++..++..        +.+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~   77 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV   77 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence            466788899999999999998 4445 567 88889999999999999999999999999998876632        555


Q ss_pred             chHHHHHHhhh
Q 010881          416 NGVEKVRRGME  426 (498)
Q Consensus       416 ~~a~~~~~~m~  426 (498)
                      .++...+++..
T Consensus        78 ~~a~~~~~~~~   88 (99)
T 2kc7_A           78 MDILNFYNKDM   88 (99)
T ss_dssp             HHHHHHHCCTT
T ss_pred             HHHHHHHHHHh
Confidence            66777775554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.51  E-value=0.0002  Score=52.55  Aligned_cols=66  Identities=12%  Similarity=-0.055  Sum_probs=58.9

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      +...+..+..+|...|++++|...|++. ...| +...|..+..+|...|++++|++.+++++++.|.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~   73 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE   73 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence            6888999999999999999999999998 4445 5778999999999999999999999999987654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.50  E-value=0.00029  Score=50.24  Aligned_cols=65  Identities=17%  Similarity=0.092  Sum_probs=59.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +...+..+...+...|++++|+..++++++..|+++..+..++.++...|++++|...+++..+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            35677888889999999999999999999999999999999999999999999999999988764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.48  E-value=0.00027  Score=67.11  Aligned_cols=104  Identities=9%  Similarity=-0.009  Sum_probs=80.4

Q ss_pred             hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCch---HHHHHH
Q 010881          345 RAGMLEAAKKVVREM---------PIEPD-NYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEG---VHVLLS  406 (498)
Q Consensus       345 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~~~~l~  406 (498)
                      ..|++++|+.++++.         +-.|+ ..+++.|..+|...|++++|+.+++++++     .+|+++.   .++.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999988775         22332 56789999999999999999999999986     5677664   477899


Q ss_pred             HHhHhcCCcchHHHHHHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHH
Q 010881          407 NIYASTEQWNGVEKVRRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLF  466 (498)
Q Consensus       407 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  466 (498)
                      .+|..+|++++|..++++..+.-..                  .-...||...++...|+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~  431 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE  431 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence            9999999999999999998763221                  01256888777766653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.47  E-value=0.00094  Score=66.07  Aligned_cols=146  Identities=7%  Similarity=-0.058  Sum_probs=119.1

Q ss_pred             CHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH
Q 010881          270 CIETACSVFDSMPN---RDVFAYTSLISGLANHDQ----------SASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY  336 (498)
Q Consensus       270 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~  336 (498)
                      ..++|.+.++.+..   .+..+|+.--..+...|+          +++++..++++.+.  .|+           +..+|
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK-----------~y~aW  110 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPK-----------SYGTW  110 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTT-----------CHHHH
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCC-----------CHHHH
Confidence            34677888888764   355677777777777776          89999999999885  344           68899


Q ss_pred             HHHHHHHhhcC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          337 GCLVDLLGRAG--MLEAAKKVVREM-PIEP-DNYVLGALLNACRVHG-DVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       337 ~~l~~~~~~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      ..-.-++.+.|  +++++++.++++ ...| |..+|+.-...+...| .++++++.++++++.+|.+..+|...+.++.+
T Consensus       111 ~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~  190 (567)
T 1dce_A          111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ  190 (567)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence            99888999999  779999999999 4445 7888988888888888 89999999999999999999999998888777


Q ss_pred             c--------------CCcchHHHHHHhhhhC
Q 010881          412 T--------------EQWNGVEKVRRGMEDN  428 (498)
Q Consensus       412 ~--------------g~~~~a~~~~~~m~~~  428 (498)
                      .              ++++++++.+++....
T Consensus       191 l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~  221 (567)
T 1dce_A          191 LHPQPDSGPQGRLPENVLLKELELVQNAFFT  221 (567)
T ss_dssp             HSCCCCSSSCCSSCHHHHHHHHHHHHHHHHH
T ss_pred             hcccccccccccccHHHHHHHHHHHHHHHhh
Confidence            4              5678888888777653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.41  E-value=0.0021  Score=50.27  Aligned_cols=110  Identities=9%  Similarity=-0.119  Sum_probs=88.2

Q ss_pred             CCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHH
Q 010881          199 DLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK----CGCIETA  274 (498)
Q Consensus       199 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  274 (498)
                      +++++|+..|++..+.| .|+..    +...|...+..++|...|+...+.|   +...+..|...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            46788999999988877 34433    5555666677888999998888876   56777888888887    7899999


Q ss_pred             HHHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 010881          275 CSVFDSMPN-RDVFAYTSLISGLAN----HDQSASAIELFMRMQLEG  316 (498)
Q Consensus       275 ~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~  316 (498)
                      ...|++..+ .++..+..|...|..    .++.++|..+|++..+.|
T Consensus        81 ~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            999988765 577788888888888    889999999999998876

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.41  E-value=0.00075  Score=64.03  Aligned_cols=96  Identities=9%  Similarity=-0.029  Sum_probs=76.2

Q ss_pred             hcCChHHHHHHHHHHHHcC---CCCCchhhhhhCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCC
Q 010881          298 NHDQSASAIELFMRMQLEG---VVPNESMSEIYGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM---------PIEPD  364 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~  364 (498)
                      ..|++++|+.++++.++..   +.|+         .| ...+++.|..+|...|++++|+.++++.         +..|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~---------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~  380 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDS---------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN  380 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTT---------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChh---------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence            3578999999998877631   2232         22 3678999999999999999999999887         33443


Q ss_pred             -HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchHH
Q 010881          365 -NYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEGVH  402 (498)
Q Consensus       365 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~  402 (498)
                       ..+++.|...|...|++++|+.+++++++     .+|+++.+-
T Consensus       381 ~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~  424 (433)
T 3qww_A          381 VASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYIS  424 (433)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence             55789999999999999999999999986     678887543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.39  E-value=0.00097  Score=63.37  Aligned_cols=103  Identities=12%  Similarity=0.059  Sum_probs=81.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcC---CCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC---------C
Q 010881          293 ISGLANHDQSASAIELFMRMQLEG---VVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM---------P  360 (498)
Q Consensus       293 i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~  360 (498)
                      +..+.+.|++++|+.++++.++..   +.|+.        .....+++.|+.+|...|++++|+.++++.         +
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h--------~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDIN--------IYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTS--------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccc--------hHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC
Confidence            455677899999999999988642   22221        114678999999999999999999999876         3


Q ss_pred             CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCchHHH
Q 010881          361 IEP-DNYVLGALLNACRVHGDVDLGKETVESLVE-----RSLDHEGVHV  403 (498)
Q Consensus       361 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~  403 (498)
                      ..| -..+++.|...|...|++++|+.+++++++     .+|+++.+-.
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            344 255788999999999999999999999986     6888875543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.28  E-value=0.0018  Score=50.72  Aligned_cols=105  Identities=14%  Similarity=0.023  Sum_probs=79.9

Q ss_pred             HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCchHHHHHHHHhHhcCCcchHHHH
Q 010881          349 LEAAKKVVREM--PIEPDNYVLGALLNACRVHG---DVDLGKETVESLVERS-L-DHEGVHVLLSNIYASTEQWNGVEKV  421 (498)
Q Consensus       349 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~  421 (498)
                      ...+.+.|.+.  .-.++..+...+..++.+.+   ++++++.+++...+.+ | ++...++.|+-++.+.|++++|.++
T Consensus        14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y   93 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   93 (152)
T ss_dssp             HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence            34455555544  22468888888999999988   6779999999999988 6 4567888999999999999999999


Q ss_pred             HHhhhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCccc
Q 010881          422 RRGMEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD  479 (498)
Q Consensus       422 ~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~  479 (498)
                      ++.+.+.                          .|+..+.......+.+++++.|.+-
T Consensus        94 ~~~lL~i--------------------------eP~n~QA~~Lk~~ie~~~~kdgl~G  125 (152)
T 1pc2_A           94 VRGLLQT--------------------------EPQNNQAKELERLIDKAMKKDGLVG  125 (152)
T ss_dssp             HHHHHHH--------------------------CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHhhHHH
Confidence            9998763                          3344455555556678888887654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.16  E-value=1.4e-05  Score=74.07  Aligned_cols=239  Identities=10%  Similarity=0.005  Sum_probs=103.6

Q ss_pred             hHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHc
Q 010881           21 FAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACAD  100 (498)
Q Consensus        21 ~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~  100 (498)
                      .+|+.|..++...  +.+.+|.+.|-  ...|+..|..+|.+..+.|.+++-+..+.-.++..-.|.  .=+.|+-+|++
T Consensus        55 ~VWs~LgkAqL~~--~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk  128 (624)
T 3lvg_A           55 AVWSQLAKAQLQK--GMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAK  128 (624)
T ss_dssp             CCSSSHHHHTTTS--SSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHT
T ss_pred             cHHHHHHHHHHcc--CchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHh
Confidence            3444444444444  44444444332  223334444555555555555555444443333222222  22344445555


Q ss_pred             cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC------------------------CCChhh
Q 010881          101 TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV------------------------NRDVIS  156 (498)
Q Consensus       101 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------~~~~~~  156 (498)
                      .+++.+...++       -.|+..-...+.+-|...|.++.|.-+|..+.                        ..++.+
T Consensus       129 ~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          129 TNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             SCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             hCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            54443322211       12333334444445555555555554443321                        113444


Q ss_pred             HHHHHHHHHccCCHHHHHHHHhh-CCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCC
Q 010881          157 WTSLINGYAKSGQISIARQMFDK-MPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGA  235 (498)
Q Consensus       157 ~~~li~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  235 (498)
                      |-.+-.+|...+.+..|.-.--. +..++  -...++..|-..|.+++-+.+++.-... -......|+-|.-.|++- +
T Consensus       202 WKeV~~ACvd~~EfrLAqicGLniIvhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~  277 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-K  277 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHHHHHHHCCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-C
T ss_pred             HHHHHHHHhCchHHHHHHHhcchhcccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-C
Confidence            55555555554444332211110 11110  1112334455556666666666655421 234445555555555443 3


Q ss_pred             hHHHHHHHHHHH-HhCCCC------ChhHHHHHHHHHHhcCCHHHHHH
Q 010881          236 LDQGRWIHAYVD-RNGIEL------DIILGTAIIDMYAKCGCIETACS  276 (498)
Q Consensus       236 ~~~a~~~~~~~~-~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~  276 (498)
                      +++..+.++..- +.+++.      ....|..++-.|+.-.+++.|..
T Consensus       278 PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          278 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             TTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            333333322211 112111      23567777777888888886654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.13  E-value=0.001  Score=48.37  Aligned_cols=59  Identities=12%  Similarity=0.217  Sum_probs=54.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCch-HHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          371 LLNACRVHGDVDLGKETVESLVERSLDHEG-VHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      ....+...|++++|...++++++..|+++. .+..++.+|...|++++|.+.|++..+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            456778899999999999999999999998 99999999999999999999999987654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.97  E-value=0.02  Score=52.19  Aligned_cols=132  Identities=11%  Similarity=-0.005  Sum_probs=85.5

Q ss_pred             CChhHHHHHHHHHH--hcC---ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh---cC-----C--
Q 010881          284 RDVFAYTSLISGLA--NHD---QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR---AG-----M--  348 (498)
Q Consensus       284 ~~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~---~g-----~--  348 (498)
                      .+...|...+++..  ..+   ...+|..+|++..+.  .|+           ....|..+..+|..   .+     .  
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~-----------~a~A~A~la~a~~~~~~~~~~~~~~~~  258 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPE-----------FTYARAEKALVDIVRHSQHPLDEKQLA  258 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHHhccCCCchhhHH
Confidence            35666666665533  222   346788888888774  444           24455444444321   11     0  


Q ss_pred             -HHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          349 -LEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       349 -~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                       ...+.+....+ ....++.+|..+...+...|++++|...+++++.++|+ ...|..++.++.-.|++++|.+.+++..
T Consensus       259 ~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~Al  337 (372)
T 3ly7_A          259 ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAF  337 (372)
T ss_dssp             HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence             11222222223 22447888888877777789999999999999999864 4567788899999999999999998877


Q ss_pred             hCC
Q 010881          427 DNE  429 (498)
Q Consensus       427 ~~~  429 (498)
                      ..+
T Consensus       338 rL~  340 (372)
T 3ly7_A          338 NLR  340 (372)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.93  E-value=0.0039  Score=56.86  Aligned_cols=69  Identities=7%  Similarity=-0.103  Sum_probs=61.8

Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      .+..+|..+...+...|++++|...++++ .+.|+...|..+...+.-.|++++|.+.|++++.++|..+
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            36888988888888889999999999998 5568888888888899999999999999999999999875

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.93  E-value=0.071  Score=55.33  Aligned_cols=152  Identities=13%  Similarity=0.076  Sum_probs=95.2

Q ss_pred             HHccCCcHHHHH-HHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010881           98 CADTSCLFVGLI-CHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQM  176 (498)
Q Consensus        98 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~  176 (498)
                      ....++++.|.+ ++..     + ++......++..+.+.|..+.|.++.+.     .   ..-.......|+++.|.++
T Consensus       609 ~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~  674 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDL  674 (814)
T ss_dssp             HHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHH
Confidence            344566666655 3311     1 1022225666777778888888776642     1   1112334567888888888


Q ss_pred             HhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh
Q 010881          177 FDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII  256 (498)
Q Consensus       177 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  256 (498)
                      .+.+.  +...|..+...+.+.++++.|.+.|.++..         |..+...+...++.+....+-+.....|      
T Consensus       675 ~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------  737 (814)
T 3mkq_A          675 LTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------  737 (814)
T ss_dssp             HTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------
T ss_pred             HHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------
Confidence            87774  557888899999999999999999887743         3344444555666666666555555544      


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhh
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDS  280 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~  280 (498)
                      -++....+|.+.|++++|.+++.+
T Consensus       738 ~~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          738 KFNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCHHHHHHHHHH
Confidence            223444556667888887776544

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.90  E-value=0.004  Score=54.37  Aligned_cols=88  Identities=15%  Similarity=0.191  Sum_probs=73.5

Q ss_pred             HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-chHHHHHHHHhHhc-CCcch
Q 010881          349 LEAAKKVVREM-PIEPD---NYVLGALLNACRV-----HGDVDLGKETVESLVERSLDH-EGVHVLLSNIYAST-EQWNG  417 (498)
Q Consensus       349 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~  417 (498)
                      ..+|...+++. .+.|+   ...|..|...|..     -|+.++|.+.|+++++++|+. ..+++.++..++.. |+.++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            45667777776 55676   6688888888888     499999999999999999975 99999999999985 99999


Q ss_pred             HHHHHHhhhhCCccccCce
Q 010881          418 VEKVRRGMEDNEVRKVPGC  436 (498)
Q Consensus       418 a~~~~~~m~~~~~~~~~~~  436 (498)
                      +.+.+++......+..|+.
T Consensus       259 a~~~L~kAL~a~p~~~P~~  277 (301)
T 3u64_A          259 FDEALDRALAIDPESVPHN  277 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSSC
T ss_pred             HHHHHHHHHcCCCCCCCCh
Confidence            9999999998777654553

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.81  E-value=0.029  Score=58.32  Aligned_cols=125  Identities=14%  Similarity=0.076  Sum_probs=74.5

Q ss_pred             HHccCCHHHHHH-HHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 010881          164 YAKSGQISIARQ-MFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWI  242 (498)
Q Consensus       164 ~~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  242 (498)
                      ....+++++|.+ ++..++.  ......++..+.+.|.+++|+++.+.-.        .-    .......|+++.|.++
T Consensus       609 ~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~--------~~----f~~~l~~~~~~~A~~~  674 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQD--------QK----FELALKVGQLTLARDL  674 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHH--------HH----HHHHHHHTCHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcc--------hh----eehhhhcCCHHHHHHH
Confidence            345677888777 5544431  1223666777777888888776653211        11    2233556788887777


Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010881          243 HAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQ  313 (498)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  313 (498)
                      .+.      ..+...|..+.+.+.+.++++.|.+.|.++..     |..+...+...|+.+....+.+...
T Consensus       675 ~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d-----~~~l~~l~~~~~~~~~~~~~~~~a~  734 (814)
T 3mkq_A          675 LTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD-----LESLFLLHSSFNNKEGLVTLAKDAE  734 (814)
T ss_dssp             HTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC-----HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC-----hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence            543      24567888888888888888888888776643     3333334444555554444443333

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.78  E-value=0.012  Score=43.19  Aligned_cols=74  Identities=16%  Similarity=0.035  Sum_probs=61.9

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-----P----IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                      +..-...|...+...|++..|...|+..     +    -.+....+..|..++.+.|+++.|...++++++..|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            4556678899999999999999999876     1    123577888999999999999999999999999999998765


Q ss_pred             HHH
Q 010881          403 VLL  405 (498)
Q Consensus       403 ~~l  405 (498)
                      ..+
T Consensus        84 ~n~   86 (104)
T 2v5f_A           84 GNL   86 (104)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.71  E-value=0.009  Score=42.79  Aligned_cols=69  Identities=10%  Similarity=0.045  Sum_probs=58.5

Q ss_pred             CChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          331 PGVQHYGCLVDLLGRAGM---LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      .+...+..+..++...++   .++|..++++. ...| +...+..+...+...|++++|+..|+++++.+|.++
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~   77 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL   77 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            367888888888875555   79999999998 5556 678888888999999999999999999999998844

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.46  E-value=0.015  Score=45.48  Aligned_cols=88  Identities=10%  Similarity=-0.017  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHH
Q 010881          303 ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG---MLEAAKKVVREM-PIE-P--DNYVLGALLNAC  375 (498)
Q Consensus       303 ~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~  375 (498)
                      ..+.+-|.+....+             .++..+...+.-++++.+   +++++..+|++. ... |  +...+-.+.-+|
T Consensus        15 ~~~~~~y~~e~~~~-------------~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~   81 (152)
T 1pc2_A           15 LKFEKKFQSEKAAG-------------SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   81 (152)
T ss_dssp             HHHHHHHHHHHHTT-------------CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC-------------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHH
Confidence            44555666655543             246788888999999988   677999999988 323 5  356677778889


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881          376 RVHGDVDLGKETVESLVERSLDHEGVHV  403 (498)
Q Consensus       376 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~  403 (498)
                      .+.|++++|++.++.+++.+|++..+..
T Consensus        82 ~kl~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           82 YRLKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            9999999999999999999999865433

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.32  E-value=0.088  Score=39.70  Aligned_cols=65  Identities=9%  Similarity=0.058  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881          367 VLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       367 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  431 (498)
                      .....+..+..+|+-++-.+++..++...+.++.....++.+|.+.|+..+|.+++++.-++|++
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            33444455555555555555555544444444455555555555555555555555555555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.17  E-value=0.089  Score=42.27  Aligned_cols=100  Identities=12%  Similarity=0.075  Sum_probs=66.2

Q ss_pred             HHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHH
Q 010881           28 GFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVG  107 (498)
Q Consensus        28 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a  107 (498)
                      .....+  |+++.|.++.+.+  .+...|..|.....++|+++-|..+|.+...         |..+.-.|...|+.+..
T Consensus        13 ~LAL~l--g~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           13 DLALEY--GNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHHHT--TCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHHHhc--CCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            444566  8999999988776  4566899999999999999999999988654         45566666667777766


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHh
Q 010881          108 LICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLF  146 (498)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  146 (498)
                      .++-+.....| .     ++.....+...|+++++.++|
T Consensus        80 ~kla~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL  112 (177)
T 3mkq_B           80 SKMQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIF  112 (177)
T ss_dssp             HHHHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHH
Confidence            65555554443 1     223333344445555555444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.09  E-value=0.033  Score=41.87  Aligned_cols=80  Identities=13%  Similarity=-0.024  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCchHHHHHHHHhHhcCCcchHHH
Q 010881          348 MLEAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDL---GKETVESLVERS-L-DHEGVHVLLSNIYASTEQWNGVEK  420 (498)
Q Consensus       348 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~a~~  420 (498)
                      .+..+.+-|.+.  .-.|+..+-..+..++.+..+...   ++.+++.+...+ | ......+.|+-++.+.|++++|.+
T Consensus        16 ~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            344444444443  113677777777778877776555   778888877766 4 344556678888888888888888


Q ss_pred             HHHhhhh
Q 010881          421 VRRGMED  427 (498)
Q Consensus       421 ~~~~m~~  427 (498)
                      +++.+.+
T Consensus        96 ~~~~lL~  102 (126)
T 1nzn_A           96 YVRGLLQ  102 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888865

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.97  E-value=0.027  Score=41.24  Aligned_cols=65  Identities=11%  Similarity=-0.045  Sum_probs=54.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERS-------LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      +..-...+...+...|++..|..+++.+++..       +....++..|+.++.+.|++++|..++++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            45556678889999999999999999999853       334567889999999999999999999998764

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.44  E-value=0.069  Score=41.22  Aligned_cols=99  Identities=8%  Similarity=0.050  Sum_probs=75.2

Q ss_pred             ChHHHHHHHHHHhhcCCH------HHHHHHHHhC--CCCCCH-HHHHHHHH------HHHhcCCHHHHHHHHHHHHhcCC
Q 010881          332 GVQHYGCLVDLLGRAGML------EAAKKVVREM--PIEPDN-YVLGALLN------ACRVHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~--~~~p~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~~~~~~  396 (498)
                      |..+|-..+...-+.|+.      ++..++|++.  .++|+. ..|...+.      .+...++.++|.++|+.++....
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~hK   91 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANCK   91 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhH
Confidence            688999999998888998      8888888887  444532 11222111      23445899999999999998755


Q ss_pred             CCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          397 DHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       397 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      .-...+...+..-.++|+.+.|.+++.+....+.
T Consensus        92 kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           92 KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            5566777888888899999999999988877554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.38  E-value=0.13  Score=39.73  Aligned_cols=113  Identities=12%  Similarity=0.075  Sum_probs=78.9

Q ss_pred             CCChhHHHHHHHHHHhcCCh------HHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH---HHhhcCCHHHHH
Q 010881          283 NRDVFAYTSLISGLANHDQS------ASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD---LLGRAGMLEAAK  353 (498)
Q Consensus       283 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~  353 (498)
                      ..|..+|-..+...-+.|+.      ++..++|++.... +.|+.        .-.-..|-.|--   .+...++.++|.
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k--------~~~wrrYI~LWIrYA~~~ei~D~d~aR   80 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDK--------YGQNESFARIQVRFAELKAIQEPDDAR   80 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGG--------GTTCHHHHHHHHHHHHHHHHHCGGGCH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccc--------cccHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            34777888888888777888      8888899988874 44441        001111111111   123458999999


Q ss_pred             HHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          354 KVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       354 ~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                      ++|+.+   .-+- ...|-....--.++|+++.|.+++.+++...|.+.......
T Consensus        81 ~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a  134 (161)
T 4h7y_A           81 DYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA  134 (161)
T ss_dssp             HHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred             HHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence            999988   2122 77887788888999999999999999999999876544443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.26  E-value=0.91  Score=36.42  Aligned_cols=45  Identities=18%  Similarity=0.051  Sum_probs=22.9

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881          232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP  282 (498)
Q Consensus       232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  282 (498)
                      ..|+++.|.++.+.+      .+...|..|.+.....|+++-|.+.|.+..
T Consensus        17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            345555555444332      134455555555555555555555555544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.14  E-value=0.54  Score=35.99  Aligned_cols=104  Identities=8%  Similarity=-0.035  Sum_probs=71.9

Q ss_pred             HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchHHHHHHHHhHhcCCcchHHHHHHh
Q 010881          350 EAAKKVVREM-PIEPDNYVLGALLNACRVHGD---VDLGKETVESLVERSLD-HEGVHVLLSNIYASTEQWNGVEKVRRG  424 (498)
Q Consensus       350 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~  424 (498)
                      ....+-|.+- +-.|+..+-..+..++.+..+   ..+++.+++.+...+|. .....+.|+-++.+.|++++|.++.+.
T Consensus        23 ~~lr~qY~~E~~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~  102 (144)
T 1y8m_A           23 EILRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDT  102 (144)
T ss_dssp             HHHHHHHHHTTSTTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            3344444333 335777777777778877764   45788888888887775 344566888899999999999999988


Q ss_pred             hhhCCccccCceeEEEECCEEEEEeeCCCCCcchHHHHHHHHHHHHHHHhcCccc
Q 010881          425 MEDNEVRKVPGCSLIEVDGVVCEFVSGERTNVLMEEIVLLLFGIDKHLKSLCFFD  479 (498)
Q Consensus       425 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~  479 (498)
                      +.+..                          |+.+++.+.-..+.+++.+.|.+-
T Consensus       103 lL~~e--------------------------P~n~QA~~Lk~~Ie~~i~kdGliG  131 (144)
T 1y8m_A          103 LFEHE--------------------------RNNKQVGALKSMVEDKIQKETLKG  131 (144)
T ss_dssp             HHHTC--------------------------CCCHHHHHHHHHHHHHHHHTTTTT
T ss_pred             HHhcC--------------------------CCcHHHHHHHHHHHHHHHHhchhh
Confidence            87643                          333444555555578888877654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.88  E-value=0.43  Score=35.83  Aligned_cols=90  Identities=10%  Similarity=-0.024  Sum_probs=65.7

Q ss_pred             ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHH
Q 010881          301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEA---AKKVVREM-PIE-P--DNYVLGALLN  373 (498)
Q Consensus       301 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~  373 (498)
                      ....+..-|.+....|             .|+..+-..+.-++.+..+...   ++.++++. ... |  .....-.|.-
T Consensus        16 ~l~~~~~~y~~e~~~~-------------~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAv   82 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAG-------------SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV   82 (126)
T ss_dssp             HHHHHHHHHHHHHHHS-------------CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-------------CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            3445555565555543             2467788888888988887665   88888887 323 4  3445556777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881          374 ACRVHGDVDLGKETVESLVERSLDHEGVHV  403 (498)
Q Consensus       374 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  403 (498)
                      ++.+.|++++|.+.++.+++..|++..+..
T Consensus        83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            899999999999999999999999875443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.41  E-value=0.11  Score=45.41  Aligned_cols=113  Identities=8%  Similarity=-0.043  Sum_probs=71.4

Q ss_pred             CChhHHHHHhhhcCCCCcc--hHHHHHH-HHHhC--CCc------hHHHHHHHHhHHCCCCCC---cchHHHHHHHHHc-
Q 010881           36 GDLSHGYRLFVCLQYRTTF--IWNTMIR-GFAEK--NEP------IKAFALYKQMLRSDFLPN---NYTFSFILRACAD-  100 (498)
Q Consensus        36 g~~~~A~~~~~~~~~~~~~--~~~~li~-~~~~~--~~~------~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~-  100 (498)
                      ++...-...+.+....++.  .|..++. .+...  |++      ..|...+++..+  +.|+   -..|..+...|.. 
T Consensus       135 ~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~v  212 (301)
T 3u64_A          135 GDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAA  212 (301)
T ss_dssp             SCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHS
T ss_pred             cchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhC
Confidence            4444445555555544443  3544443 23332  333      566777777776  4465   4467777777777 


Q ss_pred             ----cCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhC-CChhhHHHHhhccC
Q 010881          101 ----TSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATC-NCMDPARKLFDMSV  150 (498)
Q Consensus       101 ----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~  150 (498)
                          .|+.++|.+.|++.++..+.-+..++......++.. |+.+++.+.+++..
T Consensus       213 Pp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL  267 (301)
T 3u64_A          213 PESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRAL  267 (301)
T ss_dssp             CTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence                388888888888888887654566666777777774 77888888877654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.40  E-value=1.2  Score=33.69  Aligned_cols=136  Identities=18%  Similarity=0.100  Sum_probs=86.9

Q ss_pred             ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC-CChhHHHHHHHHHHhcCChHHHHHHHH
Q 010881          232 FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN-RDVFAYTSLISGLANHDQSASAIELFM  310 (498)
Q Consensus       232 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~  310 (498)
                      ..|..++..++..+.....   +..-+|.++--....-+-+-..++++.+-+ -|.          ...|+.......+-
T Consensus        19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi----------s~C~NlKrVi~C~~   85 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL----------DKCQNLKSVVECGV   85 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG----------GGCSCTHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCc----------HhhhcHHHHHHHHH
Confidence            3466666666666665543   334444444433344444444555544332 011          12344444444444


Q ss_pred             HHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010881          311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVRE-M-PIEPDNYVLGALLNACRVHGDVDLGKETV  388 (498)
Q Consensus       311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  388 (498)
                      .+-.                 +.......++.+...|.-++-.+++.. . ..+|++...-.+..+|.+.|+..+|.+++
T Consensus        86 ~~n~-----------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl  148 (172)
T 1wy6_A           86 INNT-----------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLL  148 (172)
T ss_dssp             HTTC-----------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             Hhcc-----------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHH
Confidence            4322                 356677778888899999999999998 4 55678888899999999999999999999


Q ss_pred             HHHHhcCCC
Q 010881          389 ESLVERSLD  397 (498)
Q Consensus       389 ~~~~~~~~~  397 (498)
                      .++.+.+..
T Consensus       149 ~~AC~kG~k  157 (172)
T 1wy6_A          149 IEACKKGEK  157 (172)
T ss_dssp             HHHHHTTCH
T ss_pred             HHHHHhhhH
Confidence            999887743

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=93.98  E-value=0.27  Score=37.07  Aligned_cols=66  Identities=6%  Similarity=-0.062  Sum_probs=39.0

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          362 EPDNYVLGALLNACRVHGD---VDLGKETVESLVERSLD-HEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       362 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .|+..+--.+..++.+..+   ..+++.+++.+.+.+|. .......|+-++.+.|++++|.++.+.+.+
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3555555555555555543   34566666666665553 234455666677777777777777666654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=93.86  E-value=5.6  Score=39.37  Aligned_cols=119  Identities=7%  Similarity=-0.024  Sum_probs=65.4

Q ss_pred             CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 010881          300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVH  378 (498)
Q Consensus       300 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~  378 (498)
                      .+.+.|...+........ .+.        .-....+..++..+...+...++...+... ...++.....-.+....+.
T Consensus       228 ~d~~~A~~~~~~~~~~~~-~~~--------~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~  298 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQQ-LNE--------DQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGT  298 (618)
T ss_dssp             HCHHHHHHHHHHHHHHTT-CCH--------HHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHhhhhccC-CCH--------HHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHC
Confidence            367888888887765421 110        001122233333344445344555555444 2223333333344444566


Q ss_pred             CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          379 GDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       379 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      |+++.|...|+.+-...+..+...+-++.++...|+.++|..+|+.+.+
T Consensus       299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            8888888888776553334444566677777777888888877777653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.20  E-value=0.0042  Score=58.01  Aligned_cols=252  Identities=10%  Similarity=0.087  Sum_probs=185.1

Q ss_pred             CChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHH
Q 010881           36 GDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVI  115 (498)
Q Consensus        36 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~  115 (498)
                      ++++.|.+.-++...|.  .|..|..+....+...+|++.|-+.      -|+..|..++.+..+.|.++.-..++....
T Consensus        39 ~~ldRa~eyA~~~n~p~--VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaR  110 (624)
T 3lvg_A           39 GNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMAR  110 (624)
T ss_dssp             CCSTTTTTSSSSCCCCC--CSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTS
T ss_pred             cccHHHHHHHHHhCCcc--HHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            56788888777766665  4778999999999999998776432      366778999999999999999999888777


Q ss_pred             HhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCC-------------
Q 010881          116 RLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPE-------------  182 (498)
Q Consensus       116 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~-------------  182 (498)
                      +..-  ++.+=+.|+-+|++.++..+..+++.   .||..-...+..-|...|.++.|.-+|..+..             
T Consensus       111 k~~k--e~~IDteLi~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~  185 (624)
T 3lvg_A          111 KKAR--ESYVETELIFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGE  185 (624)
T ss_dssp             TTCC--STTTTHHHHHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSG
T ss_pred             HHhc--ccccHHHHHHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            6543  34455689999999999887766654   35666667777778888888888877776653             


Q ss_pred             -----------CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881          183 -----------KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI  251 (498)
Q Consensus       183 -----------~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  251 (498)
                                 .++.||-.+-.+|...+.+.-|.-.--.+.   +.||  ....++..|-..|.+++-+.+++.-.... 
T Consensus       186 yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglglE-  259 (624)
T 3lvg_A          186 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGLE-  259 (624)
T ss_dssp             GGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-
T ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence                       378899999999999999987765544443   2222  22345667788899998888887765332 


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC----C-------ChhHHHHHHHHHHhcCChHHHHH
Q 010881          252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPN----R-------DVFAYTSLISGLANHDQSASAIE  307 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-------~~~~~~~li~~~~~~~~~~~a~~  307 (498)
                      ......|+.|.-.|++- +.++..+.++....    |       ....|.-++-.|.+-.+++.|..
T Consensus       260 rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          260 RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            45678888888888875 44555544443322    2       45678888888888888887653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.20  E-value=0.95  Score=45.76  Aligned_cols=55  Identities=18%  Similarity=0.099  Sum_probs=51.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          372 LNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       372 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      ..-|...|+++.|+.+.++++..-|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            3456788999999999999999999999999999999999999999999999985

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.49  E-value=0.45  Score=37.55  Aligned_cols=92  Identities=11%  Similarity=0.043  Sum_probs=68.0

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCC---
Q 010881          336 YGCLVDLLGRAGMLEAAKKVVREM----PIEPD-------NYVLGALLNACRVHGDVDLGKETVESLVERS---LDH---  398 (498)
Q Consensus       336 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~---  398 (498)
                      +..-+..+...|.++.|+-+.+.+    +..|+       ..++..+..++...+++.+|...|++++...   +..   
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            344477788899999998887765    22344       2356677889999999999999999986521   111   


Q ss_pred             -------------------chHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          399 -------------------EGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       399 -------------------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                                         ...-+.++.+|.+.+++++|+.+++.+..
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence                               13556789999999999999999987643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.38  E-value=9.8  Score=35.97  Aligned_cols=94  Identities=13%  Similarity=0.124  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCc---
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM-----PIEPD---NYVLGALLNACRVHGDVDLGKETVESLVE---RSLDHE---  399 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~---  399 (498)
                      .....|...+...|++.+|..++.++     +..+.   ...+..-++.|...+++.+|..+++++..   ..+.++   
T Consensus       138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk  217 (445)
T 4b4t_P          138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLK  217 (445)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHH
Confidence            34466889999999999999999987     22221   34566677889999999999999999753   223333   


Q ss_pred             -hHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          400 -GVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       400 -~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                       ..+...+..+...++|.+|.+.|....+
T Consensus       218 ~~~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          218 LEYYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence             3456788888999999999988777643

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.16  E-value=7.7  Score=41.87  Aligned_cols=167  Identities=13%  Similarity=0.085  Sum_probs=108.8

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCC--------------------------ChhHHHHHHHHHHhcCChHHH
Q 010881          252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNR--------------------------DVFAYTSLISGLANHDQSASA  305 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~a  305 (498)
                      +.+....-.+..+|..+|++++|...|++....                          -..-|..++..+-+.+.++.+
T Consensus       839 ~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~v  918 (1139)
T 4fhn_B          839 NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDA  918 (1139)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHH
T ss_pred             cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHH
Confidence            344444455677889999999999999887420                          012477788888999999999


Q ss_pred             HHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 010881          306 IELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLG  384 (498)
Q Consensus       306 ~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A  384 (498)
                      .++-....+.. .++.       .......|..+...+...|++++|...+-.+ ...--...+..|+..++..|..+.-
T Consensus       919 i~fa~lAi~~~-~~~~-------~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L  990 (1139)
T 4fhn_B          919 LEFSLLADASK-ETDD-------EDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQL  990 (1139)
T ss_dssp             HHHHHHHHHHC-CSCC-------HHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHhc-cCCC-------hhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhh
Confidence            98888777642 1220       0001236888999999999999999999877 2223466788888877777765444


Q ss_pred             HH--------HHHHHH-----hc-CCCC-chHHHHHHHHhHhcCCcchHHHH-HHhhh
Q 010881          385 KE--------TVESLV-----ER-SLDH-EGVHVLLSNIYASTEQWNGVEKV-RRGME  426 (498)
Q Consensus       385 ~~--------~~~~~~-----~~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~-~~~m~  426 (498)
                      ..        .++.++     .. .+.+ +..|..|=..+...|++..|..+ |+...
T Consensus       991 ~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B          991 LNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp             HHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             hCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence            22        222222     22 3333 33445555556677888877664 55443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.11  E-value=0.56  Score=43.65  Aligned_cols=68  Identities=15%  Similarity=0.045  Sum_probs=52.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh-----CCccccCc
Q 010881          368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED-----NEVRKVPG  435 (498)
Q Consensus       368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~  435 (498)
                      ...++.++...|++++|...+..++..+|-+...+..++.+|.+.|+..+|++.|++..+     .|+.|.|.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            445667777888888888888888888888888888888888888888888888887753     36665543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.68  E-value=0.77  Score=46.42  Aligned_cols=122  Identities=12%  Similarity=0.046  Sum_probs=76.9

Q ss_pred             HHHHHHHhCCC-chHHHHHHHHhHHCCCCCCcchHH--HHHHHHHccCC-cHHHHHHHHHHHHh------CCCC-c----
Q 010881           58 TMIRGFAEKNE-PIKAFALYKQMLRSDFLPNNYTFS--FILRACADTSC-LFVGLICHAQVIRL------GWES-Y----  122 (498)
Q Consensus        58 ~li~~~~~~~~-~~~A~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~g~-~~~a~~~~~~~~~~------~~~~-~----  122 (498)
                      .++..+...++ .+.|+.+|+++.+..  |...++.  .++..+...++ --+|.+++.+.++.      ...+ +    
T Consensus       253 ~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          253 SLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            34444444556 478999999998743  5444332  23333333322 22344444444321      1111 1    


Q ss_pred             ------hhHHHHHHHHHHhCCChhhHHHHhhccC---CCChhhHHHHHHHHHccCCHHHHHHHHhhCC
Q 010881          123 ------DFVLNGLLHLYATCNCMDPARKLFDMSV---NRDVISWTSLINGYAKSGQISIARQMFDKMP  181 (498)
Q Consensus       123 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~  181 (498)
                            ......-...+...|+++.|+++-++.+   ..+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                  1123333456778899999999998865   3467899999999999999999999999886

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=89.78  E-value=11  Score=33.82  Aligned_cols=25  Identities=16%  Similarity=0.167  Sum_probs=12.6

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHH
Q 010881          153 DVISWTSLINGYAKSGQISIARQMF  177 (498)
Q Consensus       153 ~~~~~~~li~~~~~~~~~~~A~~~~  177 (498)
                      |+.....+...|.+.+++.+|+.-|
T Consensus       135 dp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          135 DPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHccCCHHHHHHHH
Confidence            3444444445555555555555554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=89.57  E-value=7.8  Score=31.93  Aligned_cols=124  Identities=7%  Similarity=-0.046  Sum_probs=48.1

Q ss_pred             hhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHh
Q 010881           38 LSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRL  117 (498)
Q Consensus        38 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~  117 (498)
                      .+....+.+.+..++...-...+..+.+.++.+ +...+.++..   .+|...-...+.++...++.+.... +..++  
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~~~~~~~~~~~-L~~~l--   90 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER-AVEPLIKALK---DEDAWVRRAAADALGQIGDERAVEP-LIKAL--   90 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSCHHHHHHHHHHHHHHCCGGGHHH-HHHHT--
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCcc-HHHHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHH-HHHHH--
Confidence            333334444444444444444455555544422 2233333322   1343333344444444444322221 11111  


Q ss_pred             CCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCC
Q 010881          118 GWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ  169 (498)
Q Consensus       118 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~  169 (498)
                       -.++..+....+.++.+.++.+....+.+.+..++...-...+.++.+.++
T Consensus        91 -~~~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~  141 (211)
T 3ltm_A           91 -KDEDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGD  141 (211)
T ss_dssp             -TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred             -cCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence             123444444444444444443333333333333344333333444443333

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.43  E-value=14  Score=34.80  Aligned_cols=26  Identities=4%  Similarity=0.178  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQ  212 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~  212 (498)
                      ....++..|...|+++...+.+.-+.
T Consensus        58 ~l~~iv~l~~~~~~~~~l~e~i~~Ls   83 (445)
T 4b4t_P           58 VLAKIVDLLASRNKWDDLNEQLTLLS   83 (445)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34555666666666666655554443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.98  E-value=10  Score=35.02  Aligned_cols=157  Identities=8%  Similarity=0.006  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881          256 ILGTAIIDMYAKCGCIETACSVFDSMPN--------RDVFAYTSLISGLANHD-QSASAIELFMRMQLEGVVPNESMSEI  326 (498)
Q Consensus       256 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~  326 (498)
                      .....|...|.+.|+.++..+++.....        +.......++..+.... ..+.-.++..+..+...         
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~---------   90 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK---------   90 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH---------
Confidence            4556788888899999888888887764        23445667777776643 33334444444433100         


Q ss_pred             hCCCCChHHH------HHHHHHHhhcCCHHHHHHHHHhC-----CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010881          327 YGIEPGVQHY------GCLVDLLGRAGMLEAAKKVVREM-----PIEPD---NYVLGALLNACRVHGDVDLGKETVESLV  392 (498)
Q Consensus       327 ~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~  392 (498)
                          -...+|      ..++..|...|++.+|..++.++     .....   ...+..-+..|...+++.++...+..+.
T Consensus        91 ----~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~  166 (394)
T 3txn_A           91 ----QEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR  166 (394)
T ss_dssp             ----HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence                012333      26889999999999999998887     22211   2344555667899999999999999987


Q ss_pred             hcC---CCCchH----HHHHHHHhH-hcCCcchHHHHHHhh
Q 010881          393 ERS---LDHEGV----HVLLSNIYA-STEQWNGVEKVRRGM  425 (498)
Q Consensus       393 ~~~---~~~~~~----~~~l~~~~~-~~g~~~~a~~~~~~m  425 (498)
                      ...   +.+|..    ...-+..+. ..++|.+|...|-+.
T Consensus       167 ~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          167 TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             hhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence            632   233322    223445566 789999998877554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=88.59  E-value=20  Score=37.23  Aligned_cols=218  Identities=7%  Similarity=-0.035  Sum_probs=93.8

Q ss_pred             HHHHHHHHccCCcH-HHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccCCC----Chh--hHHHHHHHH
Q 010881           92 SFILRACADTSCLF-VGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSVNR----DVI--SWTSLINGY  164 (498)
Q Consensus        92 ~~ll~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~li~~~  164 (498)
                      .++.+++...|--. .........+... .+....-....-+....|+.+++..+++.....    +..  .-..+.-+.
T Consensus       343 ~~f~Naf~naG~~~D~~l~~~~~Wl~k~-~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGl  421 (963)
T 4ady_A          343 VSVANGFMHAGTTDNSFIKANLPWLGKA-QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGL  421 (963)
T ss_dssp             HHHHHHHHTTTTCCCHHHHHCHHHHHHC-CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCcchhhhcchhhhhcc-chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence            35566777776432 2122222222221 222222223333456678888888888776541    222  222333444


Q ss_pred             HccCCHHHHHHHHhhCCC-CC----------hhHHHHHHHHHHhCCC-HhHHHHHHHHHHHcCCCCCHHHHH--HHHHHH
Q 010881          165 AKSGQISIARQMFDKMPE-KN----------AVSWSAMINGYVQVDL-FKEALEHFNYMQLCGFRPNHAGIV--GALTAC  230 (498)
Q Consensus       165 ~~~~~~~~A~~~~~~~~~-~~----------~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~  230 (498)
                      ...|.-+++...+..... ++          ...-..+.-+++-.|. -+++...+..+....- +......  .+...+
T Consensus       422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~  500 (963)
T 4ady_A          422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCM  500 (963)
T ss_dssp             HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhh
Confidence            555554455555544321 11          1111222222322232 1345555555544211 1111111  222233


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCChhHHHHHHHH--HHhcCCHHHHHHHHhhCCC-CChh-HHH---HHHHHHHhcCChH
Q 010881          231 AFLGALDQGRWIHAYVDRNGIELDIILGTAIIDM--YAKCGCIETACSVFDSMPN-RDVF-AYT---SLISGLANHDQSA  303 (498)
Q Consensus       231 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~-~~~~-~~~---~li~~~~~~~~~~  303 (498)
                      .-.|+.+....++..+.+..   +..+...+.-+  +...|+.+.+..+++.+.. .+.. -|.   ++.-+|+..|+..
T Consensus       501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~  577 (963)
T 4ady_A          501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS  577 (963)
T ss_dssp             TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred             cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence            45566666666666555421   22333323332  3345665555555554432 2222 222   2333455666665


Q ss_pred             HHHHHHHHHHH
Q 010881          304 SAIELFMRMQL  314 (498)
Q Consensus       304 ~a~~~~~~m~~  314 (498)
                      ....++..+..
T Consensus       578 aIq~LL~~~~~  588 (963)
T 4ady_A          578 AVKRLLHVAVS  588 (963)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHhcc
Confidence            55556666554

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=88.49  E-value=4  Score=31.24  Aligned_cols=72  Identities=17%  Similarity=0.124  Sum_probs=54.7

Q ss_pred             CCChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH
Q 010881          330 EPGVQHYGCLVDLLGRAGM---LEAAKKVVREM-PIEP--DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV  401 (498)
Q Consensus       330 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  401 (498)
                      .|+..+-..+.-++.+..+   ..+++.+++++ ...|  .....-.|.-++.+.|++++|.+..+.+++.+|++..+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            3567777777888887765   45677888877 2234  34455566778999999999999999999999998643

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=88.02  E-value=14  Score=32.82  Aligned_cols=25  Identities=12%  Similarity=0.125  Sum_probs=12.5

Q ss_pred             chhHHHHHHHHHHhCCChhhHHHHh
Q 010881          122 YDFVLNGLLHLYATCNCMDPARKLF  146 (498)
Q Consensus       122 ~~~~~~~l~~~~~~~g~~~~a~~~~  146 (498)
                      ++..+..+...|.+.|++.+|+..|
T Consensus       133 dp~LH~~~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A          133 DPYLHNTIGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            4444555555555555555555444

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.95  E-value=4.5  Score=43.64  Aligned_cols=125  Identities=8%  Similarity=-0.074  Sum_probs=88.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCC---
Q 010881          289 YTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEP---  363 (498)
Q Consensus       289 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p---  363 (498)
                      ...++..+...+.++-+.++..-..                 .+...--.+..+|...|++++|.+.|++.  ++..   
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~~-----------------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~  877 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWLN-----------------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTS  877 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHSC-----------------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcc-----------------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccch
Confidence            3345666777777776665443221                 13444456778899999999999999988  2211   


Q ss_pred             --------------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCch----HHHHHHHHhHhcCCcchH
Q 010881          364 --------------------DNYVLGALLNACRVHGDVDLGKETVESLVERSL-DHEG----VHVLLSNIYASTEQWNGV  418 (498)
Q Consensus       364 --------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~g~~~~a  418 (498)
                                          -..-|..++..+.+.+.++.+.++...+++..+ +++.    .|..+...+...|++++|
T Consensus       878 l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A  957 (1139)
T 4fhn_B          878 QFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA  957 (1139)
T ss_dssp             SCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred             hhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence                                123467778888899999999999999988654 3332    466788889999999999


Q ss_pred             HHHHHhhhhCCc
Q 010881          419 EKVRRGMEDNEV  430 (498)
Q Consensus       419 ~~~~~~m~~~~~  430 (498)
                      ...+-.+.+...
T Consensus       958 y~aL~~~pd~~~  969 (1139)
T 4fhn_B          958 HVALMVLSTTPL  969 (1139)
T ss_dssp             GHHHHHHHHSSS
T ss_pred             HHHHHhCCCHHH
Confidence            988877665443

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=87.48  E-value=2.9  Score=31.52  Aligned_cols=73  Identities=16%  Similarity=0.116  Sum_probs=55.3

Q ss_pred             CCChHHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          330 EPGVQHYGCLVDLLGRAGM---LEAAKKVVREM-PIEP--DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       330 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                      .|+..+-..+.-++.+..+   ..+++.+++++ ...|  ....+-.|.-++.+.|++++|.+..+.+++..|++..+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            3566777777777777665   45678888777 2234  355666777899999999999999999999999987543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.44  E-value=6.1  Score=28.07  Aligned_cols=67  Identities=16%  Similarity=0.265  Sum_probs=50.0

Q ss_pred             HHHHhhcC-CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          340 VDLLGRAG-MLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       340 ~~~~~~~g-~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      ...+-+.. |.=+..+-++.+   .+.|++....+.+.+|.+.+++..|.++++-+...-.+....|..++
T Consensus        16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l   86 (109)
T 1v54_E           16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI   86 (109)
T ss_dssp             HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence            33344444 555666666665   78899999999999999999999999999998876544444566553

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=87.44  E-value=4.6  Score=33.01  Aligned_cols=80  Identities=8%  Similarity=0.051  Sum_probs=54.5

Q ss_pred             HHHHHHHhC-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHhHhcCCcchHHHHHHhh
Q 010881          351 AAKKVVREM-PIEPDNYVLGALLNACRV--HGDVDLGKETVESLVERS--LDHEGVHVLLSNIYASTEQWNGVEKVRRGM  425 (498)
Q Consensus       351 ~A~~~~~~~-~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m  425 (498)
                      .+...|... ..+-|+......+..-..  .++..++.++|..+...+  -..+..|...+..+...|++.+|.++|+.-
T Consensus        62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~G  141 (202)
T 3esl_A           62 RCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELG  141 (202)
T ss_dssp             HHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344444444 445566655554443222  455778999999988755  445667888999999999999999999777


Q ss_pred             hhCCc
Q 010881          426 EDNEV  430 (498)
Q Consensus       426 ~~~~~  430 (498)
                      .+.+-
T Consensus       142 I~~~A  146 (202)
T 3esl_A          142 AENNC  146 (202)
T ss_dssp             HHTTC
T ss_pred             HHcCC
Confidence            66554

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=87.29  E-value=15  Score=32.53  Aligned_cols=130  Identities=12%  Similarity=0.065  Sum_probs=71.9

Q ss_pred             HHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHH----HHHHHHcCCCCCHHHHHHHHHHHhccC
Q 010881          159 SLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEH----FNYMQLCGFRPNHAGIVGALTACAFLG  234 (498)
Q Consensus       159 ~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~g~~p~~~~~~~ll~~~~~~~  234 (498)
                      ++..-|.+.+++++|++++..           -...+.+.|+...|-++    .+...+.+++++......++..+....
T Consensus        38 tl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p  106 (312)
T 2wpv_A           38 TIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELD  106 (312)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence            444445555566666555332           12234455655544443    444455667777777776666654432


Q ss_pred             --Ch---HHHHHHHHHHHHhCC--CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhc
Q 010881          235 --AL---DQGRWIHAYVDRNGI--ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANH  299 (498)
Q Consensus       235 --~~---~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~  299 (498)
                        ..   .-..+....-.+.|-  .-++.....+...|.+.|++.+|+..|-.-...+...+..++--+...
T Consensus       107 ~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~  178 (312)
T 2wpv_A          107 PSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQ  178 (312)
T ss_dssp             TTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHh
Confidence              11   122222333333332  236678888999999999999999987633323555565555544444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=86.98  E-value=9  Score=30.20  Aligned_cols=62  Identities=8%  Similarity=-0.061  Sum_probs=31.2

Q ss_pred             hHHHHHHHHHhCCCchHHHHHHHHhHHC-CCCCCc-------chHHHHHHHHHccCCcHHHHHHHHHHHH
Q 010881           55 IWNTMIRGFAEKNEPIKAFALYKQMLRS-DFLPNN-------YTFSFILRACADTSCLFVGLICHAQVIR  116 (498)
Q Consensus        55 ~~~~li~~~~~~~~~~~A~~~~~~m~~~-~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~  116 (498)
                      .+-.-+..+...+.++.|+-+.+.+... +..|+.       .++..+..++...|++.+|...|++.++
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3334445555556666665555554332 122222       1334455556666666666666666543

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.08  E-value=2.9  Score=38.79  Aligned_cols=65  Identities=14%  Similarity=0.118  Sum_probs=50.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--------CC
Q 010881          290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--------PI  361 (498)
Q Consensus       290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~  361 (498)
                      ..++..+...|++.+|...+..+...  .|           -+...|..+|.++.+.|+..+|++.|++.        |+
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P-----------~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~  241 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFE--HP-----------YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI  241 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--ST-----------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CC-----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence            34566777888888888888888764  22           25678899999999999999999888765        77


Q ss_pred             CCCHHH
Q 010881          362 EPDNYV  367 (498)
Q Consensus       362 ~p~~~~  367 (498)
                      .|+..+
T Consensus       242 ~P~~~l  247 (388)
T 2ff4_A          242 DPGPTL  247 (388)
T ss_dssp             CCCHHH
T ss_pred             CCCHHH
Confidence            787654

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=85.76  E-value=13  Score=30.23  Aligned_cols=181  Identities=5%  Similarity=-0.046  Sum_probs=97.1

Q ss_pred             HHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCC
Q 010881           41 GYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWE  120 (498)
Q Consensus        41 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~  120 (498)
                      -..+++.+..+|...-...+.++.+.++.+.. ..+.++..   .++...-...+.++...++.+....+. .++.   .
T Consensus        16 ~~~~i~~L~~~~~~vr~~A~~~L~~~~~~~~~-~~L~~~l~---~~~~~vr~~a~~~L~~~~~~~~~~~L~-~~l~---d   87 (201)
T 3ltj_A           16 VEMYIKNLQDDSYYVRRAAAYALGKIGDERAV-EPLIKALK---DEDAWVRRAAADALGQIGDERAVEPLI-KALK---D   87 (201)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCGGGHHHHH-HHTT---C
T ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHc---CCCHHHHHHHHHHHHhhCCHHHHHHHH-HHHc---C
Confidence            33344444445555445555555555543332 33333332   234444444555555555543332222 2222   3


Q ss_pred             CchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCC
Q 010881          121 SYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDL  200 (498)
Q Consensus       121 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~  200 (498)
                      ++..+....+.++.+.++.+....+.+.+..++...-...+.++.+.++.+....+...+..++...-...+.++.+.|.
T Consensus        88 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~  167 (201)
T 3ltj_A           88 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG  167 (201)
T ss_dssp             SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS
T ss_pred             CCHHHHHHHHHHHHHhCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence            56666666677777777665555555555566666666667777777765544445555556666666666777777765


Q ss_pred             HhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcc
Q 010881          201 FKEALEHFNYMQLCGFRPNHAGIVGALTACAFL  233 (498)
Q Consensus       201 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  233 (498)
                       .++...+..+.+.   ++...-...+.++.+.
T Consensus       168 -~~~~~~L~~~l~d---~~~~vr~~A~~aL~~l  196 (201)
T 3ltj_A          168 -ERVRAAMEKLAET---GTGFARKVAVNYLETH  196 (201)
T ss_dssp             -HHHHHHHHHHHHH---CCHHHHHHHHHHHHHC
T ss_pred             -hhHHHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence             4566666666653   4444444455554443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=85.53  E-value=14  Score=30.35  Aligned_cols=62  Identities=10%  Similarity=0.077  Sum_probs=32.6

Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010881          252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQL  314 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  314 (498)
                      .++..+-...+.++.+.|..+....+.+.+..++...-...+.++.+.+. .++...+..+..
T Consensus       123 d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~~l~  184 (211)
T 3ltm_A          123 DEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEKLAE  184 (211)
T ss_dssp             CSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHHHHh
Confidence            34555555555666655554433334444445565555555666666554 445555555544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=85.49  E-value=7.9  Score=27.50  Aligned_cols=63  Identities=19%  Similarity=0.090  Sum_probs=35.1

Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHH
Q 010881          200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIID  263 (498)
Q Consensus       200 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  263 (498)
                      +.-+..+-++.+....+.|+.......+.+|.+.+++..|.++++-++..- .....+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            334455555555555566666666666666666666666666666555442 222344554443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=85.48  E-value=37  Score=35.26  Aligned_cols=220  Identities=10%  Similarity=-0.044  Sum_probs=115.2

Q ss_pred             HHHHHHHHHhCCChhhH-HHHh-hccCC-CCh-hhHHHHHHHHHccCCHHHHHHHHhhCCCC----Chh--HHHHHHHHH
Q 010881          126 LNGLLHLYATCNCMDPA-RKLF-DMSVN-RDV-ISWTSLINGYAKSGQISIARQMFDKMPEK----NAV--SWSAMINGY  195 (498)
Q Consensus       126 ~~~l~~~~~~~g~~~~a-~~~~-~~~~~-~~~-~~~~~li~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~li~~~  195 (498)
                      -.++.+++..+|--.+. .+.. +++.+ .+- ..-...--+....|+.+++...++.....    +..  .=..+.-+.
T Consensus       342 A~~f~Naf~naG~~~D~~l~~~~~Wl~k~~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGl  421 (963)
T 4ady_A          342 AVSVANGFMHAGTTDNSFIKANLPWLGKAQNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGL  421 (963)
T ss_dssp             HHHHHHHHHTTTTCCCHHHHHCHHHHHHCCTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCcchhhhcchhhhhccchHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHH
Confidence            34567778877754333 2211 11211 121 12223334567789999999999987751    222  222333445


Q ss_pred             HhCCCHhHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCCh--hHHHHHHHHH
Q 010881          196 VQVDLFKEALEHFNYMQLCGF-------RPNHAGIVGALTACAFLGA-LDQGRWIHAYVDRNGIELDI--ILGTAIIDMY  265 (498)
Q Consensus       196 ~~~g~~~~a~~~~~~m~~~g~-------~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~  265 (498)
                      ...|..+++..++...+...-       .+....-..+.-+.+..|. -+++...+..+.... .+..  ...-++...+
T Consensus       422 i~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~~~~~~~AalALGli~  500 (963)
T 4ady_A          422 IYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-SATSGEAAALGMGLCM  500 (963)
T ss_dssp             HTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-CHHHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-CHHHHHHHHHHHhhhh
Confidence            566666678887777665321       1112222233333333442 345555555555432 1111  1222344445


Q ss_pred             HhcCCHHHHHHHHhhCCC-CC--hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHH--HHHH
Q 010881          266 AKCGCIETACSVFDSMPN-RD--VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHY--GCLV  340 (498)
Q Consensus       266 ~~~g~~~~A~~~~~~~~~-~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~--~~l~  340 (498)
                      +-.|+-+....++..+.+ .+  +.-.-.+.-++...|+.+.+..+.+.+....             .|....-  ..+.
T Consensus       501 vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-------------dp~vRygaa~alg  567 (963)
T 4ady_A          501 LGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-------------ESLLRYGGAFTIA  567 (963)
T ss_dssp             TTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-------------CHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-------------CHHHHHHHHHHHH
Confidence            567787777777665443 22  2223333445567899998888888887631             1212221  2345


Q ss_pred             HHHhhcCCHHHHHHHHHhC
Q 010881          341 DLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       341 ~~~~~~g~~~~A~~~~~~~  359 (498)
                      -+|+..|+.....+++..+
T Consensus       568 lAyaGTGn~~aIq~LL~~~  586 (963)
T 4ady_A          568 LAYAGTGNNSAVKRLLHVA  586 (963)
T ss_dssp             HHTTTSCCHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHh
Confidence            5677778877666677766

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.56  E-value=8.6  Score=27.14  Aligned_cols=58  Identities=16%  Similarity=0.097  Sum_probs=36.9

Q ss_pred             HHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHH
Q 010881          163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGI  223 (498)
Q Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  223 (498)
                      .+...|++++|..+.+...-||...|-.|.  -.+.|.-+++..-+.++...| .|....|
T Consensus        48 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALc--e~rlGl~s~le~rL~~la~sg-~p~~q~F  105 (115)
T 2uwj_G           48 SLANQGRYQEALAFAHGNPWPALEPWFALC--EWHLGLGAALDRRLAGLGGSS-DPALADF  105 (115)
T ss_dssp             HHHHTTCHHHHHGGGTTCCCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTCS-SHHHHHH
T ss_pred             HHHcchhHHHHHHhcCCCCCchHHHHHHHH--HHhcccHHHHHHHHHHHHhCC-CHHHHHH
Confidence            455667777777777777777777776553  346677777777666666554 3443333

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=84.04  E-value=9.2  Score=27.05  Aligned_cols=51  Identities=16%  Similarity=0.174  Sum_probs=29.0

Q ss_pred             HHHccCCHHHHHHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 010881          163 GYAKSGQISIARQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG  215 (498)
Q Consensus       163 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  215 (498)
                      .+...|++++|..+.+...-||...|-.|..  .+.|.-+++..-+.++...|
T Consensus        49 SLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg   99 (116)
T 2p58_C           49 SLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ   99 (116)
T ss_dssp             HHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred             HHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence            3445566666666666666666666655432  35555566655555555443

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=81.75  E-value=9.2  Score=29.68  Aligned_cols=79  Identities=10%  Similarity=-0.006  Sum_probs=53.7

Q ss_pred             HHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCchHHHHHHHHhHhcCCcchHHHHHHhhh
Q 010881          350 EAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERS--LDHEGVHVLLSNIYASTEQWNGVEKVRRGME  426 (498)
Q Consensus       350 ~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~  426 (498)
                      +.+...|..- ..+-|+......+..-...   +++.++|..+...+  -..+..|...+..+...|++++|.++|+.-.
T Consensus        52 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi  128 (152)
T 4a1g_A           52 EHLMKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI  128 (152)
T ss_dssp             HHHHHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3445555544 4555666555555433333   34888898888755  4456668889999999999999999997777


Q ss_pred             hCCcc
Q 010881          427 DNEVR  431 (498)
Q Consensus       427 ~~~~~  431 (498)
                      +.+-+
T Consensus       129 ~~~A~  133 (152)
T 4a1g_A          129 QNQAE  133 (152)
T ss_dssp             HTTCB
T ss_pred             HcCCc
Confidence            66543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=81.61  E-value=15  Score=27.72  Aligned_cols=59  Identities=17%  Similarity=0.250  Sum_probs=45.5

Q ss_pred             CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHH
Q 010881          348 MLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLS  406 (498)
Q Consensus       348 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  406 (498)
                      |.=+..+-++.+   .+-|++......+.+|.+.+|+..|.++++-+...-.+....|..++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l  129 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI  129 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence            444555555555   78899999999999999999999999999998875544444566553

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=80.89  E-value=20  Score=30.88  Aligned_cols=53  Identities=17%  Similarity=0.063  Sum_probs=37.2

Q ss_pred             HHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881          229 ACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP  282 (498)
Q Consensus       229 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  282 (498)
                      ...+.|++++++.....-++.. +.|...-..|++.+|-.|+++.|.+-++...
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a   58 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI   58 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3445667777777666666654 6677777778888888888888877766554

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=80.88  E-value=21  Score=28.94  Aligned_cols=48  Identities=10%  Similarity=0.007  Sum_probs=18.5

Q ss_pred             chhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCC
Q 010881          122 YDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQ  169 (498)
Q Consensus       122 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~  169 (498)
                      +..+....+.++...++.+....+.+.+..++...-...+.++.+.++
T Consensus        58 ~~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~  105 (201)
T 3ltj_A           58 DAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD  105 (201)
T ss_dssp             SHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence            333333344444444443333333333333343333334444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	498
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.66
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.6
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.26
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.22
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.2
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.18
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.13
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.08
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.08
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.06
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.97
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.94
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.76
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.75
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.72
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.71
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.66
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.65
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.59
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.55
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.48
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.41
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.4
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.36
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.35
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.33
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.29
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.23
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.2
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.2
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.13
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.03
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.97
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.96
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.92
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.89
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.82
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.77
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.72
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.62
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.46
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.39
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.38
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.32
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.3
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.58
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.44
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.96
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.84
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.81
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.34
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.79
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	88.93
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	85.35
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	84.66

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=9.9e-22  Score=184.91  Aligned_cols=368  Identities=13%  Similarity=0.050  Sum_probs=293.9

Q ss_pred             HHHhhcCCCCChhHHHHHhhhcC--C-CCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccC
Q 010881           27 IGFCSASDIGDLSHGYRLFVCLQ--Y-RTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTS  102 (498)
Q Consensus        27 ~~~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g  102 (498)
                      ...+-+.  |++++|.+.++++.  . .++.++..+...+.+.|++++|+..|+++.+.  .| +..++..+..++...|
T Consensus         6 a~~~~~~--G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           6 AHREYQA--GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHH--TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHhhhhc
Confidence            3445566  99999999998865  2 36778888999999999999999999999874  34 4567888889999999


Q ss_pred             CcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhcc---CCCChhhHHHHHHHHHccCCHHHHHHHHhh
Q 010881          103 CLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMS---VNRDVISWTSLINGYAKSGQISIARQMFDK  179 (498)
Q Consensus       103 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~A~~~~~~  179 (498)
                      ++++|...+....+..+. +..............+....+.......   ..................+....+...+..
T Consensus        82 ~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence            999999999999988754 3334444444455555555554444332   234555566666667777777777777665


Q ss_pred             CCC---CChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChh
Q 010881          180 MPE---KNAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDII  256 (498)
Q Consensus       180 ~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  256 (498)
                      ...   .+...+..+...+...|++++|...+++..+.. +-+...+..+...+...|++++|...+....... +.+..
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  238 (388)
T d1w3ba_         161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV  238 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred             hhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence            542   256778888889999999999999999988753 2345577888888999999999999999988876 56777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881          257 LGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV  333 (498)
Q Consensus       257 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~  333 (498)
                      .+..+..+|.+.|++++|...|+++.+   .+..+|..+...+...|++++|...++.....  .|           .+.
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-----------~~~  305 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CP-----------THA  305 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CT-----------TCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc--CC-----------ccc
Confidence            888899999999999999999987643   46678899999999999999999999998774  22           357


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      ..+..+..++...|++++|...|++. ...| +..++..+...|...|++++|+..|+++++++|+++.++..++.+|.+
T Consensus       306 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         306 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            88899999999999999999999987 6667 577888899999999999999999999999999999999999999988


Q ss_pred             cCC
Q 010881          412 TEQ  414 (498)
Q Consensus       412 ~g~  414 (498)
                      .|+
T Consensus       386 ~~D  388 (388)
T d1w3ba_         386 MQD  388 (388)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            775

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-21  Score=182.73  Aligned_cols=350  Identities=11%  Similarity=0.001  Sum_probs=286.3

Q ss_pred             HHHHHhCCCchHHHHHHHHhHHCCCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCC
Q 010881           60 IRGFAEKNEPIKAFALYKQMLRSDFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNC  138 (498)
Q Consensus        60 i~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  138 (498)
                      ...+.+.|++++|++.|+++.+.  .| +...+..+..++...|++++|...++++++..+. +..++..+..+|...|+
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhcc
Confidence            44566789999999999999884  35 4667888889999999999999999999998744 67788899999999999


Q ss_pred             hhhHHHHhhccCC---CChhhHHHHHHHHHccCCHHHHHHHHhhC---CCCChhHHHHHHHHHHhCCCHhHHHHHHHHHH
Q 010881          139 MDPARKLFDMSVN---RDVISWTSLINGYAKSGQISIARQMFDKM---PEKNAVSWSAMINGYVQVDLFKEALEHFNYMQ  212 (498)
Q Consensus       139 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~  212 (498)
                      +++|.+.+.....   .+...+..........+....+.......   ..................+....+...+....
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhh
Confidence            9999999987653   23344444444444444443333333222   23344555666677778888999998888887


Q ss_pred             HcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHH
Q 010881          213 LCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAY  289 (498)
Q Consensus       213 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~  289 (498)
                      ... +-+...+..+...+...|+++.|...+....+.. +.+..++..+..++...|++++|...++....   .+...+
T Consensus       163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  240 (388)
T d1w3ba_         163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVH  240 (388)
T ss_dssp             HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHH
Confidence            653 3345677777888899999999999999988875 56678899999999999999999999987653   466788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHH
Q 010881          290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYV  367 (498)
Q Consensus       290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~  367 (498)
                      ..+...+...|++++|...|++..+.  .|+           +..++..+..++...|++++|.+.++..  ..+.+...
T Consensus       241 ~~l~~~~~~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  307 (388)
T d1w3ba_         241 GNLACVYYEQGLIDLAIDTYRRAIEL--QPH-----------FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADS  307 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT--CSS-----------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchh
Confidence            88999999999999999999999874  454           5789999999999999999999999988  33457888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          368 LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       368 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      +..+...+...|++++|+..++++++..|+++.++..++.+|.+.|++++|.+.|++..+
T Consensus       308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999999998865

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.2e-15  Score=133.72  Aligned_cols=224  Identities=10%  Similarity=-0.079  Sum_probs=148.4

Q ss_pred             HHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCH
Q 010881          192 INGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCI  271 (498)
Q Consensus       192 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  271 (498)
                      ...+.+.|++++|+..|+++.+.. +-+..++..+..++...|++++|...+..+.+.. +-+...+..+..+|...|++
T Consensus        26 g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~  103 (323)
T d1fcha_          26 GLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ  103 (323)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence            334444555555555555554431 1123344444444455555555555555544443 33344444555555555555


Q ss_pred             HHHHHHHhhCCC--C----------------ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881          272 ETACSVFDSMPN--R----------------DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV  333 (498)
Q Consensus       272 ~~A~~~~~~~~~--~----------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~  333 (498)
                      ++|.+.++.+..  |                +.......+..+...+...+|...+.+....  .|+         .++.
T Consensus       104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~--~p~---------~~~~  172 (323)
T d1fcha_         104 RQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL--DPT---------SIDP  172 (323)
T ss_dssp             HHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHH--STT---------SCCH
T ss_pred             cccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH--hhc---------cccc
Confidence            555555444321  0                0111111223344556678888888887764  333         2356


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS  411 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  411 (498)
                      .++..+...+...|++++|...|++. ...| +...|..+...|...|++++|++.|+++++.+|+++.++..++.+|.+
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            78889999999999999999999997 4445 688899999999999999999999999999999999999999999999


Q ss_pred             cCCcchHHHHHHhhhhC
Q 010881          412 TEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       412 ~g~~~~a~~~~~~m~~~  428 (498)
                      .|++++|++.|++..+.
T Consensus       253 ~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         253 LGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHh
Confidence            99999999999988764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.7e-14  Score=130.23  Aligned_cols=260  Identities=15%  Similarity=0.044  Sum_probs=158.8

Q ss_pred             HHHHHHhCCChhhHHHHhhccCC--C-ChhhHHHHHHHHHccCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhCCCHh
Q 010881          129 LLHLYATCNCMDPARKLFDMSVN--R-DVISWTSLINGYAKSGQISIARQMFDKMPE--K-NAVSWSAMINGYVQVDLFK  202 (498)
Q Consensus       129 l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~  202 (498)
                      ....+.+.|++++|...|++..+  | +..+|..+..++...|++++|...|++..+  | +...|..+...|...|+++
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~  104 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR  104 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccccccc
Confidence            33445555555555555555432  1 334455555555555555555555554431  1 3444555555555555555


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCC
Q 010881          203 EALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMP  282 (498)
Q Consensus       203 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  282 (498)
                      +|.+.+++....  .|+............                   ...+.......+..+...+.+.+|...|.+..
T Consensus       105 ~A~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  163 (323)
T d1fcha_         105 QACEILRDWLRY--TPAYAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAV  163 (323)
T ss_dssp             HHHHHHHHHHHT--STTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhHHHh--ccchHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence            555555555442  222110000000000                   00000011112223334456677777776554


Q ss_pred             C-----CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHH
Q 010881          283 N-----RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVR  357 (498)
Q Consensus       283 ~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  357 (498)
                      .     .+...+..+...+...|++++|+..|++....  .|+           +..+|..+..+|...|++++|.+.|+
T Consensus       164 ~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~g~~~~A~~~~~  230 (323)
T d1fcha_         164 RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPN-----------DYLLWNKLGATLANGNQSEEAVAAYR  230 (323)
T ss_dssp             HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccc-----------cccchhhhhhcccccccchhHHHHHH
Confidence            2     35567888888999999999999999998874  344           57889999999999999999999999


Q ss_pred             hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchH-----------HHHHHHHhHhcCCcchHHHHH
Q 010881          358 EM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGV-----------HVLLSNIYASTEQWNGVEKVR  422 (498)
Q Consensus       358 ~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~a~~~~  422 (498)
                      +. ...| +..+|..+..+|...|++++|+..|++++++.|++...           +..+..++...|+.+.+....
T Consensus       231 ~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~  308 (323)
T d1fcha_         231 RALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD  308 (323)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88 5556 67889999999999999999999999999988876543           345666777777776655443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.26  E-value=2.1e-09  Score=98.08  Aligned_cols=186  Identities=10%  Similarity=-0.064  Sum_probs=106.8

Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhCC----CCChhHHHHHHHHHHhcCCHHHHHHHHhhCC-------CC---ChhHHHH
Q 010881          226 ALTACAFLGALDQGRWIHAYVDRNGI----ELDIILGTAIIDMYAKCGCIETACSVFDSMP-------NR---DVFAYTS  291 (498)
Q Consensus       226 ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~---~~~~~~~  291 (498)
                      +...+...|+++.+...+........    ......+......+...++...+...+....       ..   ....+..
T Consensus       139 la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~  218 (366)
T d1hz4a_         139 RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKV  218 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred             HHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHH
Confidence            33444455555555555554443321    1112233334444555555555554443322       11   1234455


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCC-
Q 010881          292 LISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------PIEP-  363 (498)
Q Consensus       292 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-  363 (498)
                      +...+...|+.++|...+.+.....  |.       ........+..+..++...|++++|...+++.       +..| 
T Consensus       219 ~~~~~~~~~~~~~a~~~~~~~~~~~--~~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  289 (366)
T d1hz4a_         219 RVIYWQMTGDKAAAANWLRHTAKPE--FA-------NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSD  289 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHSCCCC--CT-------TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHhc--cc-------cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChH
Confidence            5566777788888888777765432  21       01223455666778888888888888887765       3334 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--C-------chHHHHHHHHhHhcCCcchHHH
Q 010881          364 DNYVLGALLNACRVHGDVDLGKETVESLVERSLD--H-------EGVHVLLSNIYASTEQWNGVEK  420 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~-------~~~~~~l~~~~~~~g~~~~a~~  420 (498)
                      ...++..+...|...|++++|.+.+++++++.+.  .       ......+...+...++.+++.+
T Consensus       290 ~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         290 LNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            3456777788889999999999999988875432  1       1123345555666677777654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=4.7e-10  Score=102.64  Aligned_cols=235  Identities=12%  Similarity=-0.049  Sum_probs=162.9

Q ss_pred             HHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCCCC---
Q 010881          187 SWSAMINGYVQVDLFKEALEHFNYMQLCGF-RPN----HAGIVGALTACAFLGALDQGRWIHAYVDRN----GIELD---  254 (498)
Q Consensus       187 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~---  254 (498)
                      .+..+..++...|++++|...|++..+... .++    ...+..+...+...|++..+...+......    +....   
T Consensus        53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~  132 (366)
T d1hz4a_          53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  132 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence            455666777777888888777777654211 111    223445556667778888888777665432    21211   


Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCC--------CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhh
Q 010881          255 IILGTAIIDMYAKCGCIETACSVFDSMPN--------RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEI  326 (498)
Q Consensus       255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  326 (498)
                      ...+..+...+...|+++.+...+.....        ....++..+...+...+...++...+.+.........      
T Consensus       133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~------  206 (366)
T d1hz4a_         133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGK------  206 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC------
T ss_pred             HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhc------
Confidence            23455677888999999999998876542        1234566666778889999999988887765321111      


Q ss_pred             hCCCC-ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----
Q 010881          327 YGIEP-GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-----DNYVLGALLNACRVHGDVDLGKETVESLVER-----  394 (498)
Q Consensus       327 ~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----  394 (498)
                       ...+ ....+..+...+...|++++|...+++. ...|     ....+..+...+...|++++|...+++++..     
T Consensus       207 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  285 (366)
T d1hz4a_         207 -YHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLR  285 (366)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             -ccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcc
Confidence             0011 2445667778889999999999999987 2222     2445667788999999999999999998753     


Q ss_pred             -CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          395 -SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       395 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                       .|....++..++.+|...|++++|.+.+++..+.
T Consensus       286 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         286 LMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence             2444567888999999999999999999987653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=6.6e-10  Score=99.80  Aligned_cols=225  Identities=8%  Similarity=-0.024  Sum_probs=173.4

Q ss_pred             hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 010881          185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHA-GIVGALTACAFLG-ALDQGRWIHAYVDRNGIELDIILGTAII  262 (498)
Q Consensus       185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~  262 (498)
                      ...|+.+...+.+.+.+++|+..++++.+.  .|+.. .|+....++...+ ++++|...++.+.+.. +-+..+|..+.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~  119 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR  119 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHh
Confidence            345667777788889999999999999885  56544 5666666666665 5899999999988876 67788999999


Q ss_pred             HHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHH
Q 010881          263 DMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCL  339 (498)
Q Consensus       263 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l  339 (498)
                      ..+.+.|++++|+..++++.+   .+...|..+...+...|++++|+..++++++.  .|+           +...|+.+
T Consensus       120 ~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~-----------n~~a~~~r  186 (315)
T d2h6fa1         120 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVR-----------NNSVWNQR  186 (315)
T ss_dssp             HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT-----------CHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCc-----------cHHHHHHH
Confidence            999999999999999998874   46789999999999999999999999999885  344           57888888


Q ss_pred             HHHHhhcCC------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch--HHHHHHHHh
Q 010881          340 VDLLGRAGM------LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG--VHVLLSNIY  409 (498)
Q Consensus       340 ~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~  409 (498)
                      ..++.+.+.      +++|.+.+.+. ...| +...|..+...+. ....+++.+.++.++++.|+...  .+..++.+|
T Consensus       187 ~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y  265 (315)
T d2h6fa1         187 YFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY  265 (315)
T ss_dssp             HHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence            777766655      67888888877 4456 6777777766554 44578899999999998887544  345667776


Q ss_pred             Hhc--CCcchHHHHHHhhh
Q 010881          410 AST--EQWNGVEKVRRGME  426 (498)
Q Consensus       410 ~~~--g~~~~a~~~~~~m~  426 (498)
                      ...  +..+.+...+++..
T Consensus       266 ~~~~~~~~~~~~~~~~ka~  284 (315)
T d2h6fa1         266 EDMLENQCDNKEDILNKAL  284 (315)
T ss_dssp             HHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHH
Confidence            543  55566666555543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=4.7e-10  Score=100.79  Aligned_cols=192  Identities=4%  Similarity=-0.069  Sum_probs=161.8

Q ss_pred             HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC-CHHHHHHHHhhCCC---CChhHHHHHHHHHH
Q 010881          222 GIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCG-CIETACSVFDSMPN---RDVFAYTSLISGLA  297 (498)
Q Consensus       222 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~  297 (498)
                      .++.+...+.+.+..++|...++.+.+.. |-+..+|+....++...| ++++|...++.+.+   .+..+|..+...+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            45555566778889999999999999986 677788899998988876 59999999998764   46789999999999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010881          298 NHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNAC  375 (498)
Q Consensus       298 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  375 (498)
                      ..|++++|+..++++.+.  .|+           +...|..+..++...|++++|++.++++ .+.| +...|+.+...+
T Consensus       124 ~l~~~~eAl~~~~kal~~--dp~-----------n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l  190 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQ--DAK-----------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVI  190 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhccHHHHHHHHhhhhhh--hhc-----------chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHH
Confidence            999999999999999884  444           6899999999999999999999999998 5566 677888777776


Q ss_pred             HhcCC------HHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          376 RVHGD------VDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       376 ~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ...+.      +++|++.+.++++.+|++..++..++.++...| .+++.+.++...+.
T Consensus       191 ~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         191 SNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDL  248 (315)
T ss_dssp             HHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHH
T ss_pred             HHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHh
Confidence            66554      689999999999999999999998888776655 57788888777654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=1.5e-10  Score=105.49  Aligned_cols=228  Identities=9%  Similarity=-0.096  Sum_probs=159.9

Q ss_pred             CCHHHHHHHHhhCCC---CChhHHHHHHHHHHhCC--CHhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHhccCChHHHHH
Q 010881          168 GQISIARQMFDKMPE---KNAVSWSAMINGYVQVD--LFKEALEHFNYMQLCGFRPNHAGIV-GALTACAFLGALDQGRW  241 (498)
Q Consensus       168 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~-~ll~~~~~~~~~~~a~~  241 (498)
                      |++++|+.+++...+   .+...|..+..++...+  ++++|...++++.+.. +++...+. .....+...+..+.|..
T Consensus        87 ~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~  165 (334)
T d1dcea1          87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA  165 (334)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence            445556666655532   25556666666655554  4788888888887753 23344433 34455666788888888


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc
Q 010881          242 IHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNE  321 (498)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  321 (498)
                      .++.+.+.. +-+...++.+..++.+.|++++|...++...+-..... .+...+...+..+++...+.......  |+ 
T Consensus       166 ~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~a~~~~~~~l~~~--~~-  240 (334)
T d1dcea1         166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL-ELVQNAFFTDPNDQSAWFYHRWLLGR--AE-  240 (334)
T ss_dssp             HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH-HHHHHHHHHCSSCSHHHHHHHHHHSC--CC-
T ss_pred             HHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH-HHHHHHHHhcchhHHHHHHHHHHHhC--cc-
Confidence            888877765 56778888888889898888877666655443222221 22334555677778888888877642  22 


Q ss_pred             hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          322 SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       322 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                                +...+..++..+...|+.++|...+.+. ...| +..+|..+...+...|++++|.+.++++++++|...
T Consensus       241 ----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~  310 (334)
T d1dcea1         241 ----------PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA  310 (334)
T ss_dssp             ----------CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGH
T ss_pred             ----------hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccH
Confidence                      3455666778888889999999999887 6566 567788888899999999999999999999999988


Q ss_pred             hHHHHHHHHhHh
Q 010881          400 GVHVLLSNIYAS  411 (498)
Q Consensus       400 ~~~~~l~~~~~~  411 (498)
                      ..|..|...+.-
T Consensus       311 ~y~~~L~~~~~~  322 (334)
T d1dcea1         311 AYLDDLRSKFLL  322 (334)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhH
Confidence            778877666553

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=5.4e-10  Score=97.48  Aligned_cols=200  Identities=12%  Similarity=-0.112  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHH
Q 010881          186 VSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMY  265 (498)
Q Consensus       186 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  265 (498)
                      .+|..+..+|.+.|++++|+..|++.++.. +-+..+|..+..++...|++++|...|+.+.+.. +.+..++..+..+|
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence            456666777777788888888887777642 2244566677777777777777777777777764 44556677777777


Q ss_pred             HhcCCHHHHHHHHhhCCC--C-ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881          266 AKCGCIETACSVFDSMPN--R-DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL  342 (498)
Q Consensus       266 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~  342 (498)
                      ...|++++|...|+...+  | +......+..++.+.+..+.+..+........  +            +...+. ++..
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------------~~~~~~-~~~~  180 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--K------------EQWGWN-IVEF  180 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--C------------CSTHHH-HHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--h------------hhhhhh-HHHH
Confidence            777777777777776553  2 23333333334444444444444444433321  1            111121 1222


Q ss_pred             HhhcCC----HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          343 LGRAGM----LEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       343 ~~~~g~----~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                      +.....    .+.+...+... ...| ...+|..+...|...|++++|.+.|++++..+|++...|
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  246 (259)
T d1xnfa_         181 YLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEH  246 (259)
T ss_dssp             HTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHH
Confidence            221111    22222211111 1122 233455566677777777777777777777777664333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.6e-09  Score=94.44  Aligned_cols=89  Identities=12%  Similarity=-0.073  Sum_probs=41.2

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCC
Q 010881          225 GALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQ  301 (498)
Q Consensus       225 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~  301 (498)
                      .+...+...|++++|...|+...+.. +-+..+++.+..+|.+.|++++|...|+++.+   .+..++..+...|...|+
T Consensus        42 ~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  120 (259)
T d1xnfa_          42 ERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  120 (259)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence            33444444455555555554444443 33444444444445555555555554444432   123344444444444455


Q ss_pred             hHHHHHHHHHHHH
Q 010881          302 SASAIELFMRMQL  314 (498)
Q Consensus       302 ~~~a~~~~~~m~~  314 (498)
                      +++|...|++..+
T Consensus       121 ~~~A~~~~~~al~  133 (259)
T d1xnfa_         121 DKLAQDDLLAFYQ  133 (259)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            5555555544444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=1.3e-08  Score=91.09  Aligned_cols=181  Identities=10%  Similarity=-0.011  Sum_probs=136.2

Q ss_pred             ChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCC--C-C-hhHHHHHHHHHHhcCChHHHHHHHH
Q 010881          235 ALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPN--R-D-VFAYTSLISGLANHDQSASAIELFM  310 (498)
Q Consensus       235 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~~~~~~a~~~~~  310 (498)
                      ..++|..+++...+...+.+...+...+..+.+.|+++.|..+|+++.+  | + ...|...+..+.+.|+.+.|..+|.
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            4567778888877655556667788888888889999999999987654  2 2 3468888888888899999999999


Q ss_pred             HHHHcCCCCCchhhhhhCCCCChHHHHHHHHH-HhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHH
Q 010881          311 RMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL-LGRAGMLEAAKKVVREM-PIE-PDNYVLGALLNACRVHGDVDLGKET  387 (498)
Q Consensus       311 ~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~A~~~  387 (498)
                      ++...+  |+           +...|...+.. +...|+.+.|..+|+.+ ... .+...|...+..+...|+++.|..+
T Consensus       159 ~al~~~--~~-----------~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~  225 (308)
T d2onda1         159 KAREDA--RT-----------RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL  225 (308)
T ss_dssp             HHHTST--TC-----------CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHhC--CC-----------cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHH
Confidence            887642  22           34455544443 34468889999999888 223 3677888888888999999999999


Q ss_pred             HHHHHhcCCCCc----hHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          388 VESLVERSLDHE----GVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       388 ~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      |+++++..|.++    ..|...+..-...|+.+.+..+++++.+.
T Consensus       226 fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999988776543    25667777777789999999998888653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.97  E-value=1.1e-09  Score=99.52  Aligned_cols=215  Identities=7%  Similarity=-0.162  Sum_probs=161.4

Q ss_pred             HhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCChhHHH-HHHHHHHhcCCHH
Q 010881          196 VQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLG--ALDQGRWIHAYVDRNGIELDIILGT-AIIDMYAKCGCIE  272 (498)
Q Consensus       196 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~  272 (498)
                      ...|++++|+..++...+.. +-+...+..+..++...+  +.+++...+..+.+.. +++...+. .....+...+.++
T Consensus        84 ~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~  161 (334)
T d1dcea1          84 ESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPA  161 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccH
Confidence            34566889999999998753 234445555655665554  5889999999998875 55566554 4556777889999


Q ss_pred             HHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCH
Q 010881          273 TACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGML  349 (498)
Q Consensus       273 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  349 (498)
                      .|...++.+.+   .+..+|+.+...+...|++++|...+......                 ......+...+...+..
T Consensus       162 ~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~-----------------~~~~~~~~~~~~~l~~~  224 (334)
T d1dcea1         162 EELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV-----------------LLKELELVQNAFFTDPN  224 (334)
T ss_dssp             HHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH-----------------HHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh-----------------HHHHHHHHHHHHHhcch
Confidence            99999999886   36678988999999999998887666554442                 11112233445566777


Q ss_pred             HHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          350 EAAKKVVREM--PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       350 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      +++...+...  ...++...+..+...+...++.++|...+.+.+..+|.+..++..++.++...|++++|.+.+++..+
T Consensus       225 ~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~  304 (334)
T d1dcea1         225 DQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  304 (334)
T ss_dssp             CSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            7777777765  22335556666777788889999999999999999999999999999999999999999999999876


Q ss_pred             CC
Q 010881          428 NE  429 (498)
Q Consensus       428 ~~  429 (498)
                      .+
T Consensus       305 ld  306 (334)
T d1dcea1         305 VD  306 (334)
T ss_dssp             HC
T ss_pred             HC
Confidence            43

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=6.4e-08  Score=86.38  Aligned_cols=187  Identities=8%  Similarity=-0.032  Sum_probs=141.3

Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHh
Q 010881          200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFD  279 (498)
Q Consensus       200 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  279 (498)
                      ..++|..+|++.++...+.+...+...+......|+.+.|..+++.+.+........+|...+..+.+.|+++.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            45777888888876544444556666677777888888888888888765422234468888888888899999999998


Q ss_pred             hCCCC---ChhHHHHHHHH-HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHH
Q 010881          280 SMPNR---DVFAYTSLISG-LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKV  355 (498)
Q Consensus       280 ~~~~~---~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  355 (498)
                      ++.+.   +...|...... +...|+.+.|..+|+.+...  .|+           +...|...++.+.+.|++++|..+
T Consensus       159 ~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~-----------~~~~w~~y~~~~~~~g~~~~aR~~  225 (308)
T d2onda1         159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGD-----------IPEYVLAYIDYLSHLNEDNNTRVL  225 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTT-----------CHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhh-----------hHHHHHHHHHHHHHcCChHHHHHH
Confidence            87642   33333333332 34468899999999999875  333           578899999999999999999999


Q ss_pred             HHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          356 VREM----PIEP--DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       356 ~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      |++.    +..|  ....|...+..-...|+.+.+..+++++.+.-|...
T Consensus       226 fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~  275 (308)
T d2onda1         226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEY  275 (308)
T ss_dssp             HHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTT
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcccc
Confidence            9987    3444  255788888888899999999999999999887754

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=4.1e-08  Score=73.36  Aligned_cols=103  Identities=12%  Similarity=0.033  Sum_probs=75.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010881          293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGA  370 (498)
Q Consensus       293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  370 (498)
                      ...+...|++++|+..|.+.++.  .|+           +...|..+..+|...|++++|+..+.+. .+.| +...|..
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~--~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   76 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKL--DPH-----------NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR   76 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhc--CCc-----------chhhhhcccccccccccccccchhhhhHHHhccchhhHHHH
Confidence            45567778888888888887764  343           5777777888888888888888887777 3334 6777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          371 LLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                      +..++...|++++|+..|+++++.+|+++.++..+..+
T Consensus        77 ~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          77 KAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            77788888888888888888888888877666666544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=4.7e-07  Score=74.16  Aligned_cols=124  Identities=11%  Similarity=-0.052  Sum_probs=105.0

Q ss_pred             HHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHH
Q 010881          262 IDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVD  341 (498)
Q Consensus       262 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~  341 (498)
                      ...+...|+++.|.+.|+++..++..+|..+..+|...|++++|+..|++.++.  .|+           +...|..+..
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~-----------~~~a~~~~g~   78 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKH-----------LAVAYFQRGM   78 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhh-----------hhhhHHHHHH
Confidence            455678899999999999998889999999999999999999999999999884  455           5889999999


Q ss_pred             HHhhcCCHHHHHHHHHhC--CCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881          342 LLGRAGMLEAAKKVVREM--PIEPD----------------NYVLGALLNACRVHGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       342 ~~~~~g~~~~A~~~~~~~--~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  398 (498)
                      +|.+.|++++|...|++.  -.+++                ..++..+..++...|++++|.+.++.+++..|..
T Consensus        79 ~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          79 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            999999999999988875  11111                3456677888999999999999999999988874

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=1.9e-08  Score=83.68  Aligned_cols=98  Identities=9%  Similarity=-0.056  Sum_probs=90.2

Q ss_pred             CChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          331 PGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                      |+...+......|.+.|++++|+..|++. ...| ++..|..+..+|.+.|++++|+..|+++++++|+++.+|..++.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            56777888899999999999999999987 4455 788899999999999999999999999999999999999999999


Q ss_pred             hHhcCCcchHHHHHHhhhhC
Q 010881          409 YASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       409 ~~~~g~~~~a~~~~~~m~~~  428 (498)
                      |...|++++|+..|++..+.
T Consensus        82 ~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHh
Confidence            99999999999999988753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=8.3e-08  Score=76.23  Aligned_cols=118  Identities=8%  Similarity=-0.012  Sum_probs=99.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 010881          291 SLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVL  368 (498)
Q Consensus       291 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~  368 (498)
                      .....|.+.|++++|+..|++..+.  .|+           +...|..+..+|...|++++|...|++. .+.| +..+|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~   81 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIEL--NPS-----------NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   81 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHhhhcccc--chh-----------hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHH
Confidence            3456788999999999999999885  455           6899999999999999999999999998 5556 67899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh--HhcCCcchHHHH
Q 010881          369 GALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY--ASTEQWNGVEKV  421 (498)
Q Consensus       369 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a~~~  421 (498)
                      ..+..++...|++++|...+++++.+.|+++..+..+..+.  ...+.+++|...
T Consensus        82 ~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          82 YRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999988877766553  344556666554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.72  E-value=2e-06  Score=75.56  Aligned_cols=246  Identities=9%  Similarity=-0.026  Sum_probs=137.4

Q ss_pred             chHhHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHH
Q 010881            2 KQIKQIQSHLTVSGTLWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLR   81 (498)
Q Consensus         2 ~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~   81 (498)
                      ..+.++.....+.+.+-. ..+.    .+.....++++.|.+++.           .....|...+++++|.+.|.++.+
T Consensus         2 ~~~~~~l~~aek~~~~~~-~~~~----~~~~~~~~~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~   65 (290)
T d1qqea_           2 SDPVELLKRAEKKGVPSS-GFMK----LFSGSDSYKFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAAD   65 (290)
T ss_dssp             CCHHHHHHHHHHHSSCCC-THHH----HHSCCSHHHHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhcCcch-hHHH----HhcCCccccHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHH
Confidence            345566666666664322 2221    222221134666766544           456778888888888888888765


Q ss_pred             C----CCCC-CcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCC-----chhHHHHHHHHHHh-CCChhhHHHHhhccC
Q 010881           82 S----DFLP-NNYTFSFILRACADTSCLFVGLICHAQVIRLGWES-----YDFVLNGLLHLYAT-CNCMDPARKLFDMSV  150 (498)
Q Consensus        82 ~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~  150 (498)
                      .    +-.+ -..+|..+..+|.+.|++++|...++...+.....     ...++..+...|.. .|++++|.+.+++  
T Consensus        66 ~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~--  143 (290)
T d1qqea_          66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYEL--  143 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH--
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHH--
Confidence            2    1111 12356667777777778877777777665431111     12233334444432 3555555555432  


Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHhhCCCC--ChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC-----CH-HH
Q 010881          151 NRDVISWTSLINGYAKSGQISIARQMFDKMPEK--NAVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRP-----NH-AG  222 (498)
Q Consensus       151 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~-~~  222 (498)
                                            |.+++.....+  -..++..+...+...|++++|+..|++........     .. ..
T Consensus       144 ----------------------A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  201 (290)
T d1qqea_         144 ----------------------AGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (290)
T ss_dssp             ----------------------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             ----------------------HHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence                                  22222222111  13456777888888888888888888877643211     11 12


Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHhCCC-C---ChhHHHHHHHHHHh--cCCHHHHHHHHhhCCCCChh
Q 010881          223 IVGALTACAFLGALDQGRWIHAYVDRNGIE-L---DIILGTAIIDMYAK--CGCIETACSVFDSMPNRDVF  287 (498)
Q Consensus       223 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~---~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~  287 (498)
                      +...+..+...++++.|...+....+.... +   .......++.++-.  .+.+++|...|+.+.+-|..
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~~  272 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW  272 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCHH
Confidence            233444556678888888888776544211 1   12344556666655  34688888888887776644

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.4e-08  Score=72.68  Aligned_cols=92  Identities=12%  Similarity=0.041  Sum_probs=84.2

Q ss_pred             HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCc
Q 010881          338 CLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQW  415 (498)
Q Consensus       338 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  415 (498)
                      .-...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++.+|+++..|..++.++...|++
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            3567888999999999999998 4456 7888999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHhhhhCC
Q 010881          416 NGVEKVRRGMEDNE  429 (498)
Q Consensus       416 ~~a~~~~~~m~~~~  429 (498)
                      ++|+..+++..+..
T Consensus        88 ~~A~~~~~~a~~~~  101 (117)
T d1elwa_          88 EEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999887643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=6.4e-08  Score=80.30  Aligned_cols=102  Identities=10%  Similarity=-0.099  Sum_probs=70.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 010881          285 DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP  363 (498)
Q Consensus       285 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  363 (498)
                      +...+......+.+.|++++|+..|.+.+..  .|+           +...|..+..+|.+.|++++|+..|++. .+.|
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~-----------~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p   69 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPL-----------VAVYYTNRALCYLKMQQPEQALADCRRALELDG   69 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC-----------CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC
Confidence            3344445566677777777777777777664  343           5677777777777777777777777776 5566


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          364 -DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       364 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                       +..+|..+..+|...|++++|+..|++++++.|++.
T Consensus        70 ~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          70 QSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence             566777777777777777777777777777666543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.65  E-value=4.9e-08  Score=72.27  Aligned_cols=90  Identities=12%  Similarity=-0.072  Sum_probs=82.6

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcC
Q 010881          336 YGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTE  413 (498)
Q Consensus       336 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  413 (498)
                      +..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|+++.++..++.+|...|
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            345677889999999999999998 4456 68899999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHhh
Q 010881          414 QWNGVEKVRRGM  425 (498)
Q Consensus       414 ~~~~a~~~~~~m  425 (498)
                      ++++|.+.+++.
T Consensus        99 ~~~~A~~~l~~~  110 (112)
T d1hxia_          99 NANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHH
Confidence            999999999875

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=3.6e-07  Score=80.53  Aligned_cols=200  Identities=10%  Similarity=-0.051  Sum_probs=128.1

Q ss_pred             HHHHHHHhCCCHhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC---C--CChhHHH
Q 010881          190 AMINGYVQVDLFKEALEHFNYMQLC----GFRPN-HAGIVGALTACAFLGALDQGRWIHAYVDRNGI---E--LDIILGT  259 (498)
Q Consensus       190 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~--~~~~~~~  259 (498)
                      .....|...|++++|...|.+..+.    +-.++ ..+|..+..+|...|++++|...++...+...   .  ....++.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            3456677777777777777776542    11121 24566777777778888888877776554311   1  1134455


Q ss_pred             HHHHHHHh-cCCHHHHHHHHhhCCC-----C----ChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCC
Q 010881          260 AIIDMYAK-CGCIETACSVFDSMPN-----R----DVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGI  329 (498)
Q Consensus       260 ~l~~~~~~-~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~  329 (498)
                      .+...|.. .|++++|...+++..+     .    ...++..+...+...|++++|...|+++........       ..
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~-------~~  194 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-------LS  194 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-------TT
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch-------hh
Confidence            56666644 5899999888877642     1    134578888999999999999999999887531111       01


Q ss_pred             CCC-hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC------HHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCC
Q 010881          330 EPG-VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD------NYVLGALLNACRV--HGDVDLGKETVESLVERSL  396 (498)
Q Consensus       330 ~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~  396 (498)
                      ... ...+...+..+...|+++.|...+++. .+.|.      ......++.++..  .+.+++|+..|+.+.+++|
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD~  271 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDK  271 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCH
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCH
Confidence            111 233455666778899999999999998 44442      2345566666654  2457888888876665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.4e-07  Score=74.29  Aligned_cols=121  Identities=12%  Similarity=0.030  Sum_probs=102.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 010881          293 ISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGA  370 (498)
Q Consensus       293 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  370 (498)
                      ...+...|++++|++.|.++     .           +|+..+|..+..+|...|++++|++.|++. .+.| +...|..
T Consensus        12 g~~~~~~~d~~~Al~~~~~i-----~-----------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~   75 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV-----Q-----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQ   75 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS-----S-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhc-----C-----------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHH
Confidence            45678899999999999764     1           235788999999999999999999999998 5556 6889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCc----------------hHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          371 LLNACRVHGDVDLGKETVESLVERSLDHE----------------GVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       371 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      +..+|.+.|++++|+..|++++...+.+.                .++..++.++.+.|++++|.+.++...+..
T Consensus        76 ~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          76 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999987654432                346688999999999999999998877644

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2e-07  Score=74.00  Aligned_cols=95  Identities=8%  Similarity=-0.073  Sum_probs=85.6

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhc
Q 010881          335 HYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYAST  412 (498)
Q Consensus       335 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  412 (498)
                      .+......|.+.|++++|...|++. .+.| +...|..+...|...|++++|...|+++++.+|.+..++..++.++...
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            3444577888999999999999998 4456 7888999999999999999999999999999999999999999999999


Q ss_pred             CCcchHHHHHHhhhhCC
Q 010881          413 EQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       413 g~~~~a~~~~~~m~~~~  429 (498)
                      |++++|...+++..+..
T Consensus        92 g~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          92 GKFRAALRDYETVVKVK  108 (159)
T ss_dssp             TCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHcC
Confidence            99999999999887643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=6.6e-07  Score=66.82  Aligned_cols=106  Identities=10%  Similarity=-0.004  Sum_probs=86.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCCCH
Q 010881          290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAG---MLEAAKKVVREM-PIEPDN  365 (498)
Q Consensus       290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p~~  365 (498)
                      ..++..+...+++++|.+.|++.+..  .|+           +..++..+..++.+.+   ++++|+.+|+++ ...|+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~-----------~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~   69 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA--GSV-----------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE   69 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH--SCC-----------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh--CCC-----------CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc
Confidence            45778888899999999999999885  343           6899999999998755   455799999987 545543


Q ss_pred             ---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 010881          366 ---YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNI  408 (498)
Q Consensus       366 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  408 (498)
                         .+|..+..+|...|++++|++.|+++++.+|++..+......+
T Consensus        70 ~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          70 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence               3677889999999999999999999999999998766555433

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.42  E-value=0.00016  Score=61.91  Aligned_cols=224  Identities=10%  Similarity=-0.096  Sum_probs=130.6

Q ss_pred             hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCChhHHHH
Q 010881          185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAF----LGALDQGRWIHAYVDRNGIELDIILGTA  260 (498)
Q Consensus       185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~  260 (498)
                      +..+..|...+.+.+++++|++.|++..+.|   +...+..+...+..    ..+...+...+....+.+   +......
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~   75 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   75 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence            3445555566666667777777777666654   23333334444433    346666666666666554   2233333


Q ss_pred             HHHHHHh----cCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCC
Q 010881          261 IIDMYAK----CGCIETACSVFDSMPNR-DVFAYTSLISGLAN----HDQSASAIELFMRMQLEGVVPNESMSEIYGIEP  331 (498)
Q Consensus       261 l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~  331 (498)
                      +...+..    ..+.+.|...++...+. .......+...+..    ......+...+......+               
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---------------  140 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---------------  140 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---------------
T ss_pred             cccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---------------
Confidence            3333332    34566666666654432 22233333333332    334556666666655532               


Q ss_pred             ChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881          332 GVQHYGCLVDLLGR----AGMLEAAKKVVREMPIEPDNYVLGALLNACRV----HGDVDLGKETVESLVERSLDHEGVHV  403 (498)
Q Consensus       332 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~  403 (498)
                      +...+..|...|..    ..+...+...++...-..+......+...|..    ..+++.|+.+|+++.+.+  ++..+.
T Consensus       141 ~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~  218 (265)
T d1ouva_         141 DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCF  218 (265)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             ccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHH
Confidence            45666667666664    45666777776665212355555556555554    568999999999988875  455778


Q ss_pred             HHHHHhHh----cCCcchHHHHHHhhhhCCcc
Q 010881          404 LLSNIYAS----TEQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       404 ~l~~~~~~----~g~~~~a~~~~~~m~~~~~~  431 (498)
                      .|+.+|.+    ..+.++|.+.|++..+.|..
T Consensus       219 ~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         219 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            88888876    34788899999888877753

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3e-06  Score=67.63  Aligned_cols=97  Identities=7%  Similarity=-0.118  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM----PIEPD-------------NYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                      ...+......+.+.|++++|+..|.+.    +..+.             ..+|+.+..+|.+.|++++|+..++++++++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            345556678899999999999999876    21111             3456778888999999999999999999999


Q ss_pred             CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      |+++.++..++.+|...|++++|+..|++..+.+
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  126 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY  126 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999987643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=2.2e-06  Score=68.48  Aligned_cols=127  Identities=7%  Similarity=-0.049  Sum_probs=90.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCC-CCc--hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CH
Q 010881          291 SLISGLANHDQSASAIELFMRMQLEGVV-PNE--SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DN  365 (498)
Q Consensus       291 ~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~  365 (498)
                      .....+.+.|++++|+..|.+.+..--. +..  ..... ....-..+|+.+..+|.+.|++++|+..+++. .+.| +.
T Consensus        18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~-~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~   96 (170)
T d1p5qa1          18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQK-AQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE   96 (170)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhh-hchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccccch
Confidence            3344556666666666666665543100 000  00000 00001356778899999999999999999988 5556 88


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchH
Q 010881          366 YVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGV  418 (498)
Q Consensus       366 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  418 (498)
                      .+|..+..+|...|++++|+..|+++++++|+++.+...+..+..+.+...+.
T Consensus        97 ~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          97 KGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999888888877666555543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.36  E-value=5.4e-06  Score=64.76  Aligned_cols=95  Identities=6%  Similarity=-0.150  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM-------PIEPD-----------NYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                      ..+..-...+.+.|++.+|...|+++       ...++           ..+|..+..+|.+.|++++|++.++++++.+
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~   97 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID   97 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc
Confidence            44555677888999999999999876       11112           2366778889999999999999999999999


Q ss_pred             CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      |.+..+|..++.++...|++++|...|++..+.
T Consensus        98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999888754

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.35  E-value=1.9e-06  Score=67.47  Aligned_cols=121  Identities=10%  Similarity=-0.067  Sum_probs=85.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCc---hhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C
Q 010881          290 TSLISGLANHDQSASAIELFMRMQLEGVVPNE---SMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-D  364 (498)
Q Consensus       290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~  364 (498)
                      ..-...+.+.|++.+|+..|.+.+..-.....   .............+|..+..+|.+.|++++|+..+++. .+.| +
T Consensus        21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~  100 (153)
T d2fbna1          21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN  100 (153)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccchh
Confidence            33445566666666666666666542110000   00000000112457888999999999999999999998 4456 7


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881          365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA  410 (498)
Q Consensus       365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  410 (498)
                      ..+|..+..++...|++++|+..|+++++++|++..+...+..+..
T Consensus       101 ~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  146 (153)
T d2fbna1         101 VKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  146 (153)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999887776655543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=2.4e-06  Score=64.60  Aligned_cols=94  Identities=13%  Similarity=0.083  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCch-------HHHH
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEG-------VHVL  404 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~  404 (498)
                      .-+-.+...+.+.|++++|+..|++. .+.| +..+|..+..+|...|++++|+..++++++++|++..       +|..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            34556788999999999999999998 4455 6889999999999999999999999999999887765       4555


Q ss_pred             HHHHhHhcCCcchHHHHHHhhhh
Q 010881          405 LSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       405 l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ++..+...+++++|++.+++...
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHh
Confidence            66777888899999999977653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.4e-07  Score=65.95  Aligned_cols=93  Identities=13%  Similarity=0.045  Sum_probs=78.3

Q ss_pred             HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--chHHHHHHHHh
Q 010881          337 GCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHG---DVDLGKETVESLVERSLDH--EGVHVLLSNIY  409 (498)
Q Consensus       337 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~  409 (498)
                      ..+++.+...+++++|.+.|++. ...| ++.++..+..++.+.+   ++++|+.+++++++.+|.+  ..++..++.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45788888999999999999998 4445 7888999999987755   4557999999999988765  34788999999


Q ss_pred             HhcCCcchHHHHHHhhhhCC
Q 010881          410 ASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       410 ~~~g~~~~a~~~~~~m~~~~  429 (498)
                      .+.|++++|.+.|+++.+..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHhC
Confidence            99999999999999998643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.29  E-value=3.6e-06  Score=67.16  Aligned_cols=84  Identities=10%  Similarity=0.018  Sum_probs=72.3

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHh
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIY  409 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  409 (498)
                      ....|..+..++.+.|++++|+..+++. .+.| +...|..+..++...|++++|++.|+++++++|++..+...+..+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~  155 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            4667888899999999999999999998 6667 7889999999999999999999999999999999988888777666


Q ss_pred             HhcCCc
Q 010881          410 ASTEQW  415 (498)
Q Consensus       410 ~~~g~~  415 (498)
                      .+....
T Consensus       156 ~~l~~~  161 (169)
T d1ihga1         156 QKIKAQ  161 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            544433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.23  E-value=4.9e-06  Score=66.35  Aligned_cols=93  Identities=6%  Similarity=-0.034  Sum_probs=79.0

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHhC-----------------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          336 YGCLVDLLGRAGMLEAAKKVVREM-----------------PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       336 ~~~l~~~~~~~g~~~~A~~~~~~~-----------------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                      +......+...|++++|+..|+++                 .+.| +...|..+..++.+.|++++|+..++++++++|+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh
Confidence            444566778889999998888765                 1223 4456777888999999999999999999999999


Q ss_pred             CchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          398 HEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       398 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ++.+|..++.+|...|++++|++.|++..+.
T Consensus       110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1         110 NTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999998764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.22  E-value=1.3e-05  Score=63.61  Aligned_cols=94  Identities=10%  Similarity=0.027  Sum_probs=77.4

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA  410 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  410 (498)
                      ...|+.+..+|.+.|++++|+..+++. .+.| +..+|..+..++...|++++|...|+++++++|+++.+...+..+..
T Consensus        64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          64 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            356777889999999999999999998 4445 78899999999999999999999999999999999988888887776


Q ss_pred             hcCCcch-HHHHHHhhh
Q 010881          411 STEQWNG-VEKVRRGME  426 (498)
Q Consensus       411 ~~g~~~~-a~~~~~~m~  426 (498)
                      ..+...+ ..+++..|-
T Consensus       144 ~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         144 KAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            6665543 444554443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.20  E-value=3.4e-06  Score=61.95  Aligned_cols=90  Identities=12%  Similarity=0.026  Sum_probs=67.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 010881          290 TSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEP-DNYV  367 (498)
Q Consensus       290 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~  367 (498)
                      ..+...+.+.|++++|...|++....  .|+           +...|..+..++.+.|++++|+..|++. .+.| +..+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~--~p~-----------~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a   86 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQK--EPE-----------REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV   86 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhccc--ccc-----------cchhhhhhhhhhhhhhhHHHhhcccccccccccccccc
Confidence            34556677788888888888888774  344           5778888888888888888888888877 4445 5777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010881          368 LGALLNACRVHGDVDLGKETVESLV  392 (498)
Q Consensus       368 ~~~l~~~~~~~g~~~~A~~~~~~~~  392 (498)
                      |..+...|...|++++|++.+++.+
T Consensus        87 ~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          87 HAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            7888888888888888888887754

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.20  E-value=0.00049  Score=58.73  Aligned_cols=224  Identities=9%  Similarity=-0.102  Sum_probs=135.5

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHhhCCCC-ChhHHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010881          154 VISWTSLINGYAKSGQISIARQMFDKMPEK-NAVSWSAMINGYVQ----VDLFKEALEHFNYMQLCGFRPNHAGIVGALT  228 (498)
Q Consensus       154 ~~~~~~li~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  228 (498)
                      +..+..|...+.+.+++++|++.|++..+. +..++..|...|..    ..++..|...+......+..   .....+..
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~---~a~~~l~~   78 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS---NGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc---chhhcccc
Confidence            334444555555556666666666655432 45555556666655    45677777777776665421   22222222


Q ss_pred             HHh----ccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHHHHHhhCCC-CChhHHHHHHHHHHh-
Q 010881          229 ACA----FLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK----CGCIETACSVFDSMPN-RDVFAYTSLISGLAN-  298 (498)
Q Consensus       229 ~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-  298 (498)
                      .+.    ...+.+.|...++...+.|.   ......+...+..    ......+...+..... .+...+..|...|.. 
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~~  155 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG  155 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhccC
Confidence            222    24566777777777776652   2222223333332    3456666666665443 466677777777765 


Q ss_pred             ---cCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHH
Q 010881          299 ---HDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGR----AGMLEAAKKVVREMPIEPDNYVLGAL  371 (498)
Q Consensus       299 ---~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l  371 (498)
                         ..+...+...++...+.|               +......+...|..    ..++++|...|++....-++..+..|
T Consensus       156 ~~~~~~~~~~~~~~~~a~~~g---------------~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~~~a~~~L  220 (265)
T d1ouva_         156 RGTPKDLKKALASYDKACDLK---------------DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNL  220 (265)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT---------------CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCcccccccchhhhhcccccc---------------ccccccchhhhcccCcccccchhhhhhhHhhhhcccCHHHHHHH
Confidence               355667777777777654               46666667666665    67899999999988112355666677


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhcCCCC
Q 010881          372 LNACRV----HGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       372 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~  398 (498)
                      ...|..    ..+.++|.++|+++.+.+..+
T Consensus       221 G~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         221 GAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             HHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            776654    347889999999998877543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.13  E-value=2.8e-05  Score=61.69  Aligned_cols=97  Identities=6%  Similarity=-0.112  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC--C-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM----PIEP--D-----------NYVLGALLNACRVHGDVDLGKETVESLVERS  395 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  395 (498)
                      ...+......+.+.|++++|...|++.    +..+  +           ..+|..+..+|.+.|++++|+..++++++++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            345666788899999999999999876    2111  1           2345667778999999999999999999999


Q ss_pred             CCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          396 LDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       396 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      |.+..++..++.++...|++++|...|+++.+..
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN  128 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999987643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=1.5e-05  Score=63.87  Aligned_cols=90  Identities=16%  Similarity=0.027  Sum_probs=76.5

Q ss_pred             HHHHHHhhcCCHHHHHHHHHhC-CCCC-----C------------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010881          338 CLVDLLGRAGMLEAAKKVVREM-PIEP-----D------------------NYVLGALLNACRVHGDVDLGKETVESLVE  393 (498)
Q Consensus       338 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~------------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  393 (498)
                      .........|++++|.+.|.+. .+.+     +                  ...+..+...+...|++++|+..++++++
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al~   95 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTF   95 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            3445678899999999999886 2211     1                  13567788889999999999999999999


Q ss_pred             cCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          394 RSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       394 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      .+|.+...|..++.+|...|++++|++.|+++.+
T Consensus        96 ~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          96 EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999854

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.9e-06  Score=82.04  Aligned_cols=108  Identities=14%  Similarity=-0.054  Sum_probs=41.2

Q ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCCh
Q 010881          255 IILGTAIIDMYAKCGCIETACSVFDSMPNRD-VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGV  333 (498)
Q Consensus       255 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~  333 (498)
                      ...+..+...+.+.|+.+.|...+.....++ ..++..+...+...|++++|...|.+..+.  .|+           +.
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~-----------~~  186 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPS-----------NG  186 (497)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------BS
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCC-----------ch
Confidence            3344444455555555555555444333222 123444555555555555555555555542  233           34


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHH
Q 010881          334 QHYGCLVDLLGRAGMLEAAKKVVREM--PIEPDNYVLGALLNAC  375 (498)
Q Consensus       334 ~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~  375 (498)
                      .+|+.|...+...|+..+|...|.+.  -..|...++..|...+
T Consensus       187 ~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         187 QPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            55555555555555555555555554  1133444555554444

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.96  E-value=0.0048  Score=53.91  Aligned_cols=285  Identities=10%  Similarity=0.028  Sum_probs=154.3

Q ss_pred             CCChhHHHHHHHHhhcCCCCChhHHHHHhhhcCCCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHH
Q 010881           17 LWDPFAVGKIIGFCSASDIGDLSHGYRLFVCLQYRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILR   96 (498)
Q Consensus        17 ~~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~   96 (498)
                      .||..--..+...|-+.  |.++.|..++..+.     -|..++..+.+.++++.|.+++.+.      -+..+|..+..
T Consensus        11 ~~n~~d~~~i~~~c~~~--~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~   77 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDE--KMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF   77 (336)
T ss_dssp             CC------------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHC--CCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence            45555556667777787  89999999998643     5778888888999999988887654      25668888888


Q ss_pred             HHHccCCcHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhCCChhhHHHHhhccC---CCChhhHHHHHHHHHccCCHHHH
Q 010881           97 ACADTSCLFVGLICHAQVIRLGWESYDFVLNGLLHLYATCNCMDPARKLFDMSV---NRDVISWTSLINGYAKSGQISIA  173 (498)
Q Consensus        97 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A  173 (498)
                      .|.+......+     .+.......+......++..|-..|.+++...+++...   ..+...++.++..|++.+. ++-
T Consensus        78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~kl  151 (336)
T d1b89a_          78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKM  151 (336)
T ss_dssp             HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHH
T ss_pred             HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HHH
Confidence            88877665443     22223334455666778899999999999999998754   3466678888888888653 444


Q ss_pred             HHHHhhCCCCChhHHHHHHHHHHhCCCHhHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 010881          174 RQMFDKMPEKNAVSWSAMINGYVQVDLFKEALEHFNYMQLCG--------FRPNHAGIVGALTACAFLGALDQGRWIHAY  245 (498)
Q Consensus       174 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  245 (498)
                      .+.+....  +......++..|-+.+-++++.-++.++....        -.++..-....+..+.+..+.+...++...
T Consensus       152 ~e~l~~~s--~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~  229 (336)
T d1b89a_         152 REHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQF  229 (336)
T ss_dssp             HHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred             HHHHHhcc--ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHH
Confidence            44444322  11222334445555555555554444432100        012221222223333344444433333333


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhh
Q 010881          246 VDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSE  325 (498)
Q Consensus       246 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  325 (498)
                      ..+.  .  +...+.++......-+...                  ++.-+-+.++..-....++.....|         
T Consensus       230 yL~~--~--p~~i~~lL~~v~~~~d~~r------------------~V~~~~k~~~l~li~p~Le~v~~~n---------  278 (336)
T d1b89a_         230 YLEF--K--PLLLNDLLMVLSPRLDHTR------------------AVNYFSKVKQLPLVKPYLRSVQNHN---------  278 (336)
T ss_dssp             HHHH--C--GGGHHHHHHHHGGGCCHHH------------------HHHHHHHTTCTTTTHHHHHHHHTTC---------
T ss_pred             HHHc--C--HHHHHHHHHHhccCCCHHH------------------HHHHHHhcCCcHHHHHHHHHHHHcC---------
Confidence            3321  1  1222333333332333333                  3333444555555666666654433         


Q ss_pred             hhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          326 IYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       326 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                            +..+.+++...|...++++.-.+..+.-
T Consensus       279 ------~~~vn~al~~lyie~~d~~~l~~~i~~~  306 (336)
T d1b89a_         279 ------NKSVNESLNNLFITEEDYQALRTSIDAY  306 (336)
T ss_dssp             ------CHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred             ------hHHHHHHHHHHHhCcchhHHHHHHHHHh
Confidence                  3567888888888888877666666543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=5.9e-05  Score=56.55  Aligned_cols=98  Identities=5%  Similarity=-0.014  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCC---C
Q 010881          288 AYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIE---P  363 (498)
Q Consensus       288 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p  363 (498)
                      .+-.+...+...|++++|+..|.+.++.  .|+           +..++..+..+|.+.|++++|+..++++ .+.   +
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~-----------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~   72 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPT-----------NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc-----------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH
Confidence            3456778899999999999999999885  444           6889999999999999999999999987 211   2


Q ss_pred             C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010881          364 D-----NYVLGALLNACRVHGDVDLGKETVESLVERSLDH  398 (498)
Q Consensus       364 ~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  398 (498)
                      .     ..+|..+...+...+++++|++.|++.+...+..
T Consensus        73 ~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~  112 (128)
T d1elra_          73 EDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP  112 (128)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence            1     3467778888899999999999999999877654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.89  E-value=8.1e-06  Score=62.98  Aligned_cols=115  Identities=12%  Similarity=0.044  Sum_probs=87.5

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhc----------CCHHHHHHHHHhC-CCCC-
Q 010881          296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRA----------GMLEAAKKVVREM-PIEP-  363 (498)
Q Consensus       296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~p-  363 (498)
                      |-+.+.+++|...|+...+.  .|+           +..++..+..+|...          +.+++|+..|++. .+.| 
T Consensus         7 ~~r~~~fe~A~~~~e~al~~--~P~-----------~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~   73 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS--NPL-----------DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK   73 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CTT-----------CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHccHHHHHHHHHHHHhh--CCc-----------chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch
Confidence            44566789999999999884  455           688898888888744          4567899999888 5566 


Q ss_pred             CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCc
Q 010881          364 DNYVLGALLNACRVHG-----------DVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEV  430 (498)
Q Consensus       364 ~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~  430 (498)
                      +..+|..+..+|...|           ++++|.+.|+++++++|++...+..|...       ..|.+++.+..+.|+
T Consensus        74 ~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          74 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred             hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence            6888988888887654           46899999999999999998666666544       356666666665553

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=6.5e-05  Score=52.83  Aligned_cols=75  Identities=17%  Similarity=0.043  Sum_probs=62.8

Q ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHH
Q 010881          333 VQHYGCLVDLLGRAGMLEAAKKVVREM----P----IEPD-NYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHV  403 (498)
Q Consensus       333 ~~~~~~l~~~~~~~g~~~~A~~~~~~~----~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  403 (498)
                      ...+..+...+.+.|++++|...|++.    +    ..++ ..++..+..++.+.|++++|+..++++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            445567889999999999999999877    1    1222 568899999999999999999999999999999998887


Q ss_pred             HHHH
Q 010881          404 LLSN  407 (498)
Q Consensus       404 ~l~~  407 (498)
                      .+..
T Consensus        85 Nl~~   88 (95)
T d1tjca_          85 NLKY   88 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7744

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.77  E-value=5.5e-05  Score=59.03  Aligned_cols=96  Identities=11%  Similarity=-0.022  Sum_probs=76.2

Q ss_pred             hHHHHHH--HHHHhhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010881          333 VQHYGCL--VDLLGRAGMLEAAKKVVREM----PIEPD----------NYVLGALLNACRVHGDVDLGKETVESLVERSL  396 (498)
Q Consensus       333 ~~~~~~l--~~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  396 (498)
                      ..+|..+  ...+...|++++|+..|++.    +-.|+          ..+|+.+..+|...|++++|...++++++..|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~   86 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   86 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence            4566666  55667889999999999987    22232          46788899999999999999999999987543


Q ss_pred             C-----------CchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          397 D-----------HEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       397 ~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      .           ...++..++.+|...|++++|++.|++..+.
T Consensus        87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2           1225778999999999999999999998764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2.9e-06  Score=80.65  Aligned_cols=97  Identities=8%  Similarity=-0.151  Sum_probs=57.7

Q ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881          332 GVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYA  410 (498)
Q Consensus       332 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  410 (498)
                      +...+..+...+.+.|+.++|...+.+. ...| ..++..+...+...|++++|+..|++++++.|++..+|..|+.++.
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~  197 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS  197 (497)
T ss_dssp             ------------------------CCHHHHHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence            4666777788888888888887766554 2112 3466777888888899999999999999999999889999999999


Q ss_pred             hcCCcchHHHHHHhhhhCC
Q 010881          411 STEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       411 ~~g~~~~a~~~~~~m~~~~  429 (498)
                      ..|+..+|...|.+.....
T Consensus       198 ~~~~~~~A~~~y~ral~~~  216 (497)
T d1ya0a1         198 SKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HTTCHHHHHHHHHHHHSSS
T ss_pred             HcCCHHHHHHHHHHHHhCC
Confidence            9999999988887776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.62  E-value=2.1e-05  Score=60.61  Aligned_cols=87  Identities=11%  Similarity=0.056  Sum_probs=70.1

Q ss_pred             HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCchHHHHHHHHhH
Q 010881          343 LGRAGMLEAAKKVVREM-PIEP-DNYVLGALLNACRVH----------GDVDLGKETVESLVERSLDHEGVHVLLSNIYA  410 (498)
Q Consensus       343 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  410 (498)
                      |-+.+.+++|...|+.. ...| ++.++..+..+|...          +.+++|+..|+++++++|+++.+|..++.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            44667799999999998 5556 677888888777643          45689999999999999999999999999998


Q ss_pred             hcCC-----------cchHHHHHHhhhhCC
Q 010881          411 STEQ-----------WNGVEKVRRGMEDNE  429 (498)
Q Consensus       411 ~~g~-----------~~~a~~~~~~m~~~~  429 (498)
                      ..|+           +++|.+.|++..+..
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~  116 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQ  116 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhcccccC
Confidence            8764           577888887776543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.46  E-value=0.00049  Score=53.34  Aligned_cols=105  Identities=14%  Similarity=0.032  Sum_probs=75.3

Q ss_pred             HHHHH--HHHHHhcCChHHHHHHHHHHHHcCC-CCCchhhhhhCCC--C-ChHHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 010881          288 AYTSL--ISGLANHDQSASAIELFMRMQLEGV-VPNESMSEIYGIE--P-GVQHYGCLVDLLGRAGMLEAAKKVVREM--  359 (498)
Q Consensus       288 ~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--  359 (498)
                      +|..+  ...+...|++++|+..|++.++... .|+.     ....  + ...+|+.+..+|...|++++|...+++.  
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~-----~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~   83 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-----EAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH   83 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-----SCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhh-----hhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhh
Confidence            45555  4456677999999999999887321 1110     0000  0 2467889999999999999999888876  


Q ss_pred             ------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010881          360 ------PIEPD-----NYVLGALLNACRVHGDVDLGKETVESLVERSLD  397 (498)
Q Consensus       360 ------~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  397 (498)
                            ...++     ...+..+..+|...|++++|+..|++++++.|.
T Consensus        84 ~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          84 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence                  22232     235677888999999999999999999987654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.39  E-value=0.00077  Score=53.46  Aligned_cols=68  Identities=15%  Similarity=0.132  Sum_probs=49.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-------
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-------  359 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------  359 (498)
                      ..+..+...+...|++++|+..+++++..  .|.           +...|..++.+|.+.|+..+|++.|+++       
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~--~P~-----------~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e  134 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFE--HPY-----------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD  134 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT-----------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHh--CCc-----------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            45666777777888888888888887774  333           5777888888888888888888777764       


Q ss_pred             -CCCCCHHH
Q 010881          360 -PIEPDNYV  367 (498)
Q Consensus       360 -~~~p~~~~  367 (498)
                       |+.|+..+
T Consensus       135 LG~~P~~~l  143 (179)
T d2ff4a2         135 LGIDPGPTL  143 (179)
T ss_dssp             HSCCCCHHH
T ss_pred             hCCCcCHHH
Confidence             66776544

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.38  E-value=0.00011  Score=62.52  Aligned_cols=124  Identities=15%  Similarity=0.004  Sum_probs=78.2

Q ss_pred             HhcCCHHHHHHHHhhCCC---CChhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHH
Q 010881          266 AKCGCIETACSVFDSMPN---RDVFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDL  342 (498)
Q Consensus       266 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~  342 (498)
                      .+.|++++|...+++..+   .|...+..+...++..|++++|...|+...+.  .|+           +...+..+...
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~-----------~~~~~~~l~~l   73 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPE-----------YLPGASQLRHL   73 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGG-----------GHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC-----------cHHHHHHHHHH
Confidence            345677777777766543   35567777777777777777777777777663  333           35555555555


Q ss_pred             HhhcCCHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHH
Q 010881          343 LGRAGMLEAAKKVVREM--PIEP-DNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVH  402 (498)
Q Consensus       343 ~~~~g~~~~A~~~~~~~--~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  402 (498)
                      +...+..+++..-....  ...| +...+......+...|+.++|.+.++++.+..|..+..+
T Consensus        74 l~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          74 VKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             HHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            55444444443332222  1123 333444455667888999999999999999888876543

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.32  E-value=0.042  Score=47.68  Aligned_cols=248  Identities=11%  Similarity=0.009  Sum_probs=118.4

Q ss_pred             CCCcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHHHHhCCCCchhHHHHH
Q 010881           50 YRTTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQVIRLGWESYDFVLNGL  129 (498)
Q Consensus        50 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  129 (498)
                      .+|..--..+..-|.+.|.++.|..+|..+..         |..++..+.+.++++.|..+....   +   +..+|..+
T Consensus        11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~---~---~~~~~k~~   75 (336)
T d1b89a_          11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA---N---STRTWKEV   75 (336)
T ss_dssp             CC----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH---T---CHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc---C---CHHHHHHH
Confidence            34544445566777788888888888876543         667777777788877776665433   1   45566666


Q ss_pred             HHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHHhhCC---CCChhHHHHHHHHHHhCCCHhHHHH
Q 010881          130 LHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMFDKMP---EKNAVSWSAMINGYVQVDLFKEALE  206 (498)
Q Consensus       130 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~  206 (498)
                      ...+........+.- .......++.....++..|-..|.+++...+++...   ..+...++.++..|++.+ .++..+
T Consensus        76 ~~~l~~~~e~~la~i-~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e  153 (336)
T d1b89a_          76 CFACVDGKEFRLAQM-CGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE  153 (336)
T ss_dssp             HHHHHHTTCHHHHHH-TTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             HHHHHhCcHHHHHHH-HHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence            666666655443322 222222344444556666666777777666666432   234455666666666543 333333


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCCh
Q 010881          207 HFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAKCGCIETACSVFDSMPNRDV  286 (498)
Q Consensus       207 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  286 (498)
                      .++..   +..-|   ...++..|...+                      .|..++-.|.+.|+++.|..+.-.-. +++
T Consensus       154 ~l~~~---s~~y~---~~k~~~~c~~~~----------------------l~~elv~Ly~~~~~~~~A~~~~i~~~-~~~  204 (336)
T d1b89a_         154 HLELF---WSRVN---IPKVLRAAEQAH----------------------LWAELVFLYDKYEEYDNAIITMMNHP-TDA  204 (336)
T ss_dssp             HHHHH---STTSC---HHHHHHHHHTTT----------------------CHHHHHHHHHHTTCHHHHHHHHHHST-TTT
T ss_pred             HHHhc---cccCC---HHHHHHHHHHcC----------------------ChHHHHHHHHhcCCHHHHHHHHHHcc-hhh
Confidence            32221   11111   111222222222                      23445555666666666655433211 122


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC
Q 010881          287 FAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM  359 (498)
Q Consensus       287 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  359 (498)
                      .-....+..+.+..+.+...++.....+.  .              +...+.++......-+..+..+.+++-
T Consensus       205 ~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~--------------p~~i~~lL~~v~~~~d~~r~V~~~~k~  261 (336)
T d1b89a_         205 WKEGQFKDIITKVANVELYYRAIQFYLEF--K--------------PLLLNDLLMVLSPRLDHTRAVNYFSKV  261 (336)
T ss_dssp             CCHHHHHHHHHHCSSTHHHHHHHHHHHHH--C--------------GGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHccCChHHHHHHHHHHHHc--C--------------HHHHHHHHHHhccCCCHHHHHHHHHhc
Confidence            23344455566666666555555544442  1              223344555555555555555555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.30  E-value=6.7e-05  Score=64.01  Aligned_cols=120  Identities=13%  Similarity=0.107  Sum_probs=85.3

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHH
Q 010881          296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPD-NYVLGALLN  373 (498)
Q Consensus       296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~  373 (498)
                      ..+.|++++|+..+++.++.  .|+           +...+..++..|+..|++++|...|+.. ...|+ ...+..+..
T Consensus         6 aL~~G~l~eAl~~l~~al~~--~P~-----------d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~   72 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA--SPK-----------DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRH   72 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--CTT-----------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH--CCC-----------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            45679999999999999985  455           7999999999999999999999999998 55674 445555554


Q ss_pred             HHHhcCCHHHHHHHHHHHHhc-CCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          374 ACRVHGDVDLGKETVESLVER-SLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       374 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      .+...+..+++.......... .|++...+...+..+...|++++|.+.+++..+.
T Consensus        73 ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          73 LVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            444444333332222211112 2333344556677888999999999999988764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00089  Score=46.67  Aligned_cols=64  Identities=9%  Similarity=-0.105  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------chHHHHHHHHhHhcCCcchHHHHHHhhhhC
Q 010881          365 NYVLGALLNACRVHGDVDLGKETVESLVERSLDH-------EGVHVLLSNIYASTEQWNGVEKVRRGMEDN  428 (498)
Q Consensus       365 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~  428 (498)
                      ...+..+...+.+.|++++|...|+++++..|.+       ..++..++.++.+.|++++|+..++++.+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            3344567888999999999999999999875543       346889999999999999999999999764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.58  E-value=0.082  Score=38.76  Aligned_cols=112  Identities=7%  Similarity=-0.114  Sum_probs=80.7

Q ss_pred             ChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 010881          301 QSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPDNYVLGALLNACRV---  377 (498)
Q Consensus       301 ~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~---  377 (498)
                      ++++|+.+|++..+.|               +......|.  .....+.++|...+++.--.-++.....|...|..   
T Consensus         8 d~~~A~~~~~kaa~~g---------------~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~   70 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---------------EMFGCLSLV--SNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKY   70 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---------------CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSS
T ss_pred             CHHHHHHHHHHHHHCC---------------Chhhhhhhc--cccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccc
Confidence            5788999999988876               223333333  34557889999999987112345555556665544   


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHh----cCCcchHHHHHHhhhhCCcc
Q 010881          378 -HGDVDLGKETVESLVERSLDHEGVHVLLSNIYAS----TEQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       378 -~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~  431 (498)
                       ..+.++|.++|+++.+.+  ++.....|+.+|..    ..+.++|.+++++..+.|..
T Consensus        71 ~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          71 VKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             SCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             cchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence             457899999999998865  44567788888876    45788999999999888754

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.44  E-value=0.25  Score=34.88  Aligned_cols=121  Identities=8%  Similarity=0.034  Sum_probs=84.9

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCchhhhhhCCCCChHHHHHHHHHHhhcCCHHHHHHHHHhCC---------------
Q 010881          296 LANHDQSASAIELFMRMQLEGVVPNESMSEIYGIEPGVQHYGCLVDLLGRAGMLEAAKKVVREMP---------------  360 (498)
Q Consensus       296 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------------  360 (498)
                      +.-.|..++..+++.+.....               +..-||-+|--....-+-+-..++++..|               
T Consensus        12 ~ildG~ve~Gveii~k~~~ss---------------~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv   76 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS---------------TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVV   76 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---------------CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHH
T ss_pred             HHHhhhHHhHHHHHHHHcccC---------------CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHH
Confidence            455678888888888776642               33444444444444444444444444441               


Q ss_pred             -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhhCCcc
Q 010881          361 -----IEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMEDNEVR  431 (498)
Q Consensus       361 -----~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~  431 (498)
                           ...+....+..+.....+|+-+.-.++++.+.+.+..++.....++.+|.+-|...++-+++++.-++|++
T Consensus        77 ~C~~~~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          77 ECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence                 11233455667788889999999999999988877667778899999999999999999999999999875

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.96  E-value=0.11  Score=37.18  Aligned_cols=69  Identities=16%  Similarity=0.118  Sum_probs=32.0

Q ss_pred             CChHHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 010881          331 PGVQHYGCLVDLLGRAG---MLEAAKKVVREM-PIEP-DN-YVLGALLNACRVHGDVDLGKETVESLVERSLDHE  399 (498)
Q Consensus       331 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  399 (498)
                      |+..+-....-++.+..   +.++++.++++. ...| +. ..+-.|.-+|.+.|++++|.+.++.+++.+|++.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            33444444444444332   334555555554 1122 21 2344444455555555555555555555555554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.84  E-value=0.22  Score=35.19  Aligned_cols=66  Identities=9%  Similarity=-0.111  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 010881          185 AVSWSAMINGYVQVDLFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGI  251 (498)
Q Consensus       185 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  251 (498)
                      ....+..++....+|+-++-.++++.+.+. -+|++.....+..+|.+.|+..++..++.++-+.|+
T Consensus        86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          86 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            344556667777888888888888776664 367777777777888888888888888777777764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.81  E-value=0.23  Score=36.14  Aligned_cols=109  Identities=10%  Similarity=-0.091  Sum_probs=69.3

Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCCHHHHH
Q 010881          200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAIIDMYAK----CGCIETAC  275 (498)
Q Consensus       200 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  275 (498)
                      |+++|+..|++..+.|.. .  ....+.  .....+.++|...++...+.|   ++.....|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            567777777777766522 1  111121  233456777888877777766   34455555555554    34678888


Q ss_pred             HHHhhCCC-CChhHHHHHHHHHHh----cCChHHHHHHHHHHHHcC
Q 010881          276 SVFDSMPN-RDVFAYTSLISGLAN----HDQSASAIELFMRMQLEG  316 (498)
Q Consensus       276 ~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~  316 (498)
                      +.|++..+ .++.....|...|..    ..+..+|..+|++..+.|
T Consensus        80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            88887654 456666666666655    357888888888887776

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.34  E-value=1.7  Score=39.00  Aligned_cols=117  Identities=5%  Similarity=-0.027  Sum_probs=69.1

Q ss_pred             CChHHHHHHHHHHHHcCCCCCchhhhhhCCCCC--hHHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH
Q 010881          300 DQSASAIELFMRMQLEGVVPNESMSEIYGIEPG--VQHYGCLVDLLGRAGMLEAAKKVVREM-PIEPDNYVLGALLNACR  376 (498)
Q Consensus       300 ~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~  376 (498)
                      .+.+.|..++.........           .++  ......+...+...+..+.+...+... ....+.....-.+....
T Consensus       228 ~d~~~a~~~l~~~~~~~~~-----------~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al  296 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQL-----------NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMAL  296 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred             cChhHHHHHHHhhhhcccc-----------cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHHHHHHHHH
Confidence            4677777777776553211           111  111122223334456667777776665 22344544445555566


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCchHHHHHHHHhHhcCCcchHHHHHHhhhh
Q 010881          377 VHGDVDLGKETVESLVERSLDHEGVHVLLSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       377 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ..+++..+...++.+-......+...+=++.++...|+.++|...|.....
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            677888888877766433333445566778888888888888888877653

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.2  Score=35.71  Aligned_cols=68  Identities=7%  Similarity=-0.037  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCc-hHHHHHHHHhHhcCCcchHHHHHHhhhhCC
Q 010881          362 EPDNYVLGALLNACRVHG---DVDLGKETVESLVERSLDHE-GVHVLLSNIYASTEQWNGVEKVRRGMEDNE  429 (498)
Q Consensus       362 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~  429 (498)
                      .|...+--....++.+..   +.++|+.+++.+.+.+|.+. ..++.|+-+|.+.|++++|.+.++++.+..
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            456666666677776654   56799999999999888654 578899999999999999999999998754

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=88.93  E-value=7.4  Score=34.56  Aligned_cols=356  Identities=8%  Similarity=-0.076  Sum_probs=186.4

Q ss_pred             ChhHHHHHhhhcCCC--CcchHHHHHHHHHhCCCchHHHHHHHHhHHCCCCCCcchHHHHHHHHHccCCcHHHHHHHHHH
Q 010881           37 DLSHGYRLFVCLQYR--TTFIWNTMIRGFAEKNEPIKAFALYKQMLRSDFLPNNYTFSFILRACADTSCLFVGLICHAQV  114 (498)
Q Consensus        37 ~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~  114 (498)
                      ..++...+++.-+.-  ....-...+..+.+.+++...+..+.     ..+++...-.....+....|+.+.|......+
T Consensus        54 ~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~l  128 (450)
T d1qsaa1          54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKEL  128 (450)
T ss_dssp             CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            455555555543321  01112223445556666555433221     11122322234445555566666655554444


Q ss_pred             HHhCC-----------------CCchhHHHHHHHHHHhCCChhhHHHHhhccCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 010881          115 IRLGW-----------------ESYDFVLNGLLHLYATCNCMDPARKLFDMSVNRDVISWTSLINGYAKSGQISIARQMF  177 (498)
Q Consensus       115 ~~~~~-----------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~  177 (498)
                      -..|.                 ..+...+-.-+......|+...|..+...+...........+.....-..+..   ..
T Consensus       129 W~~~~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~---~~  205 (450)
T d1qsaa1         129 WLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLT---FA  205 (450)
T ss_dssp             HSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHH---HH
T ss_pred             HhcCCCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHH---HH
Confidence            33331                 12222222334444455666666666655443333444444444433333322   22


Q ss_pred             hhCCCCChhHHHHHHHHHHh--CCCHhHHHHHHHHHHHcCCCCCHHHHHHHHH----HHhccCChHHHHHHHHHHHHhCC
Q 010881          178 DKMPEKNAVSWSAMINGYVQ--VDLFKEALEHFNYMQLCGFRPNHAGIVGALT----ACAFLGALDQGRWIHAYVDRNGI  251 (498)
Q Consensus       178 ~~~~~~~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~----~~~~~~~~~~a~~~~~~~~~~~~  251 (498)
                      .... .+......+..++.+  ..+.+.+..++........ .+......+-.    .....+..+.+...+......+ 
T Consensus       206 ~~~~-~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~-  282 (450)
T d1qsaa1         206 RTTG-ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS-  282 (450)
T ss_dssp             HHSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC-
T ss_pred             hcCC-CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc-
Confidence            2222 222332333333333  3578888888888766432 22222222222    2234566777877777666554 


Q ss_pred             CCChhHHHHHHHHHHhcCCHHHHHHHHhhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCchhhhhhC
Q 010881          252 ELDIILGTAIIDMYAKCGCIETACSVFDSMPNRD---VFAYTSLISGLANHDQSASAIELFMRMQLEGVVPNESMSEIYG  328 (498)
Q Consensus       252 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~  328 (498)
                       .+.......+......+++..+...+..+....   ..-.--+..++...|+.++|...|..+...             
T Consensus       283 -~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-------------  348 (450)
T d1qsaa1         283 -QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-------------  348 (450)
T ss_dssp             -CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------------
T ss_pred             -cchHHHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-------------
Confidence             344444555666677899999999999997532   223344678889999999999999998542             


Q ss_pred             CCCChHHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHH
Q 010881          329 IEPGVQHYGCLVDLLGRAGMLEAAKKVVREMPIEPD-NYV---LGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVL  404 (498)
Q Consensus       329 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  404 (498)
                          ...|..|...-... .+.-.   ....+..+. ...   -..-+..+...|....|...+..+....  ++.-...
T Consensus       349 ----~~fYG~LAa~~Lg~-~~~~~---~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~  418 (450)
T d1qsaa1         349 ----RGFYPMVAAQRIGE-EYELK---IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQ  418 (450)
T ss_dssp             ----CSHHHHHHHHHTTC-CCCCC---CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHH
T ss_pred             ----CChHHHHHHHHcCC-CCCCC---cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHH
Confidence                12344333222111 10000   000111111 111   1123456778899999999998887543  3446778


Q ss_pred             HHHHhHhcCCcchHHHHHHhhhh
Q 010881          405 LSNIYASTEQWNGVEKVRRGMED  427 (498)
Q Consensus       405 l~~~~~~~g~~~~a~~~~~~m~~  427 (498)
                      ++....+.|.++.|+....+...
T Consensus       419 la~lA~~~g~~~~aI~a~~~~~~  441 (450)
T d1qsaa1         419 LARYAFNNQWWDLSVQATIAGKL  441 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCChhHHHHHHHHHHc
Confidence            88888999999999988777653

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.35  E-value=3.6  Score=27.28  Aligned_cols=64  Identities=16%  Similarity=0.269  Sum_probs=47.7

Q ss_pred             HHhhcC-CHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCchHHHHH
Q 010881          342 LLGRAG-MLEAAKKVVREM---PIEPDNYVLGALLNACRVHGDVDLGKETVESLVERSLDHEGVHVLL  405 (498)
Q Consensus       342 ~~~~~g-~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  405 (498)
                      .+-+.+ |.=++.+-++.+   .+.|++....+.+.+|.+.+++..|.++++-+....-.+...|..+
T Consensus        14 ~F~~~~iD~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi   81 (105)
T d1v54e_          14 YFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV   81 (105)
T ss_dssp             HHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             HhcCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            333443 555666666665   7789999999999999999999999999999887553334455554

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.66  E-value=4  Score=27.11  Aligned_cols=62  Identities=19%  Similarity=0.087  Sum_probs=36.1

Q ss_pred             CHhHHHHHHHHHHHcCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCChhHHHHHH
Q 010881          200 LFKEALEHFNYMQLCGFRPNHAGIVGALTACAFLGALDQGRWIHAYVDRNGIELDIILGTAII  262 (498)
Q Consensus       200 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  262 (498)
                      +.-++.+-+..+....+.|+.....+.+.+|.+.+++..|.++++-++... .++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            344555555555555666666666666666666666666666666655442 23344554444