Citrus Sinensis ID: 010907

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------
MGRNLSNHSESPVRDQGGPSRRRSLSRKSPSRRERSPVLHRSSHRGSSPAREKERHSSRAKSPKRAQSQSPVSRSPSPRTRRLMRSRDERELGKVTEREQERNHSRKSDRGTHIGKSSSPSPRTRRLARARDEGDAERVTERDHERNNGRENGKGKLGERTRSPVSRSPSPRTKRLRRAHAEKDADKLTEKEHERNHSRTSDKEAHLPVSRSPSPHTKRLRRADAKVTERERENDHSRASDKDIHRERVSERETGSERKERRERDFEGDREGRKLGRNEASNQSSRSRRDRSTSPLDRPPRSRHRSPQSADGSWARHEVMNSGGAEYRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQGTFCMKEVPDFFLEELNSATRVGRCYLSGLFPS
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccEEEccccccccccccccEEEEEEEccccccccEEEcccEEEEEccccEEccccccccccccccEEEEEEEEEEccccccccccEEEEEEEEccccccccccccccEEEEEccccEEEcccccccccc
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccHHHHHccccEcEEEEEEcccHccccccccEEEEEEcccccccccEEEEccEEEEEccccEEEEcccccccccccEEEEEEEEEEcEcccccccccEEEEEEEEcccccEEccccccHHHHHHHcccEEEEEEEcccccc
mgrnlsnhsespvrdqggpsrrrslsrkspsrrerspvlhrsshrgssparekerhssrakspkraqsqspvsrspsprtrrlMRSRDERELGKVTEREQernhsrksdrgthigkssspsprtRRLARardegdaervterdhernngrengkgklgertrspvsrspsprtKRLRRAHAEKDADKltekehernhsrtsdkeahlpvsrspsphtkrlRRADAKVTererendhsrasdkdihrervseretgserkerrerdfegdregrklgrneasnqssrsrrdrstspldrpprsrhrspqsadgswaRHEVMnsggaeyrnddiDSVAQMKAAEEALQAKekqkpsfelsGKLAaetnrfrgvtllfneppdarkpsvrWRLYVFKAgemlkeplyihrqscylfgrerrvadiptdhpscskqHAVIQFRQVekeqpdaaSMYYCMRTrmidwhqgtfcmkevPDFFLEELNSATRVGRCYLSGLFPS
mgrnlsnhsespvrdqggpsrrrslsrkspsrrerspvlhrsshrgssparekerhssrakspkraqsqspvsrspsprtrrlmrsrderelgkvtereqernhsrksdrgthigkssspsprtrrlarardegdaervterdhernngrengkgklgertrspvsrspsprtkrlrrahaekdadkltekehernhsrtsdkeahlpvsrspsphtkrlrradakvtererendhsrasdkdihrervseretgserkerrerdfegdregrklgrneasnqssrsrrdrstspldrpprsrhrspqsadgswaRHEVMNSGGAEYRNDDIDSVAQMKAAEEALqakekqkpsfeLSGKLAAETNRFRGVTLlfneppdarkpsvRWRLYVFKagemlkeplyIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQGTFCMKEVPDFFLEELNSATRVGRCYLSGLFPS
MGRNLSNHSESPVRDQGGpsrrrslsrkspsrrerspVLHRSSHRGSSPAREKERHSSRAKSPKRAQsqspvsrspsprtrrlmrsrDERELGKVTEREQERNHSRKSDRGTHIGKSSSPSPRTRRLARARDEGDAERVTERDHERNNGRENGKGKLGErtrspvsrspsprtKRLRRAHAEKDADKLTEKEHERNHSRTSDKEAHLPVSRSPSPHTKRLRRADAKVTERERENDHSRASDKDIHRERVSERETGSerkerrerdfegdregrkLGRNEASNQssrsrrdrstspldrpprsrhrspqsADGSWARHEVMNSGGAEYRNDDIDSVaqmkaaeealqakekqkPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQGTFCMKEVPDFFLEELNSATRVGRCYLSGLFPS
*****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************NRFRGVTLLFNE*****KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDH**CSKQHAVIQFRQV*****DAASMYYCMRTRMIDWHQGTFCMKEVPDFFLEELNSATRVGRCYLSGL***
**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQGTFCMKEVPDFFLEELNSATRVGRCYLSGLFP*
***************************************************************************************************************************************************NGRENG**********************************************************************************************************************GRKL****************************************RHEVMNSGGAEYRNDDIDSVAQMKAAE*************ELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQGTFCMKEVPDFFLEELNSATRVGRCYLSGLFPS
******************************************************************************************************************************************************************************************************************************************************************************************************************************************************************FELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQGTFCMKEVPDFFLEELNSATRVGRCYLSGLF*S
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
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MGRNLSNHSESPVRDQGGPSRRRSLSRKSPSRRERSPVLHRSSHRGSSPAREKERHSSRAKSPKRAQSQSPVSRSPSPRTRRLMRSRDERELGKVTEREQERNHSRKSDRGTHIGKSSSPSPRTRRLARARDEGDAERVTERDHERNNGRENGKGKLGERTRSPVSRSPSPRTKRLRRAHAEKDADKLTEKEHERNHSRTSDKEAHLPVSRSPSPHTKRLRRADAKVTERERENDHSRASDKDIHRERVSERETGSERKERRERDFEGDREGRKLGRNEASNQSSRSRRDRSTSPLDRPPRSRHRSPQSADGSWARHEVMNSGGAEYRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMIDWHQGTFCMKEVPDFFLEELNSATRVGRCYLSGLFPS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query497 2.2.26 [Sep-21-2011]
Q8W4D8314 FHA domain-containing pro yes no 0.480 0.761 0.582 9e-57
Q8TAD8396 Smad nuclear-interacting yes no 0.579 0.727 0.350 1e-32
Q5M9G6389 Smad nuclear interacting yes no 0.235 0.300 0.561 5e-32
Q8BIZ6383 Smad nuclear-interacting yes no 0.235 0.305 0.561 5e-32
Q54VU41505 Probable serine/threonine yes no 0.476 0.157 0.256 7e-18
>sp|Q8W4D8|DDL_ARATH FHA domain-containing protein DDL OS=Arabidopsis thaliana GN=DDL PE=1 SV=1 Back     alignment and function desciption
 Score =  221 bits (564), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 149/256 (58%), Positives = 178/256 (69%), Gaps = 17/256 (6%)

Query: 208 PVSRSPSPHTKRLRRADAKVT---EREREND-HSRASDKDIHRERVSERETGSERKERRE 263
           P SRSPSP TKRLRRA  +      RERE+D   R       R+R   R+   ERK   E
Sbjct: 3   PSSRSPSPRTKRLRRARGEKEIGRSREREDDGREREKRNSRERDRDIGRDRDRERKGEGE 62

Query: 264 RDFEGDREGRKLGRNEASNQS---------SRSRRDRSTSPLDRPPRSRHRSPQSADGSW 314
           RD E   + R+ GR +   +          SR R +RSTSP DR  RS  RSP+ A  S 
Sbjct: 63  RDREVGDKRRRSGREDTEKRRRTRTDDERYSRGRHERSTSPSDRSHRSSRRSPERAIAS- 121

Query: 315 ARHEVMNS--GGAEYRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVT 372
            RH+  ++  GG+E  N + DSVA+M+A EEAL AK+K++PSFELSGKLA ETNR+RG+T
Sbjct: 122 -RHDEGSNARGGSEEPNVEEDSVARMRAVEEALAAKKKEEPSFELSGKLAEETNRYRGIT 180

Query: 373 LLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQ 432
           LLFNEPP+ARKPS RWRLYVFK GE L EPL +HRQSCYLFGRERR+ADIPTDHPSCSKQ
Sbjct: 181 LLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQ 240

Query: 433 HAVIQFRQVEKEQPDA 448
           HAVIQ+R++EKE+PD 
Sbjct: 241 HAVIQYREMEKEKPDG 256
Involved in the microRNA (miRNA) and short interfering RNA (siRNA) biogenesis. May facilitate DCL1 to access or recognize primary miRNAs. Binds RNA non-specifically.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8TAD8|SNIP1_HUMAN Smad nuclear-interacting protein 1 OS=Homo sapiens GN=SNIP1 PE=1 SV=1 Back     alignment and function description
>sp|Q5M9G6|SNIP1_RAT Smad nuclear interacting protein 1 OS=Rattus norvegicus GN=Snip1 PE=2 SV=1 Back     alignment and function description
>sp|Q8BIZ6|SNIP1_MOUSE Smad nuclear-interacting protein 1 OS=Mus musculus GN=Snip1 PE=1 SV=1 Back     alignment and function description
>sp|Q54VU4|Y8013_DICDI Probable serine/threonine-protein kinase DDB_G0280133 OS=Dictyostelium discoideum GN=DDB_G0280133 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
449468482353 PREDICTED: FHA domain-containing protein 0.494 0.696 0.603 2e-74
359485662368 PREDICTED: FHA domain-containing protein 0.511 0.690 0.544 3e-67
297739294383 unnamed protein product [Vitis vinifera] 0.511 0.663 0.544 4e-67
356530653392 PREDICTED: uncharacterized protein LOC10 0.577 0.732 0.519 1e-63
357459335326 FHA domain-containing protein DDL [Medic 0.442 0.674 0.627 3e-63
297835002311 hypothetical protein ARALYDRAFT_479579 [ 0.480 0.768 0.588 4e-63
356569853384 PREDICTED: uncharacterized protein LOC10 0.529 0.684 0.493 4e-61
255564007372 nuclear inhibitor of protein phosphatase 0.269 0.360 0.805 8e-60
242090203492 hypothetical protein SORBIDRAFT_09g01716 0.613 0.619 0.437 4e-58
294461652393 unknown [Picea sitchensis] 0.460 0.582 0.540 5e-56
>gi|449468482|ref|XP_004151950.1| PREDICTED: FHA domain-containing protein DDL-like [Cucumis sativus] gi|449489984|ref|XP_004158476.1| PREDICTED: FHA domain-containing protein DDL-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/265 (60%), Positives = 185/265 (69%), Gaps = 19/265 (7%)

Query: 218 KRLRRADAKVTERERENDH----SRASDKDIHRERVSERETGSERKERRERDFEGDREGR 273
           KRLRRA  K  E+  + DH     R SDK+ H+ERVS+RE G ERKER  R    D    
Sbjct: 73  KRLRRAAEKAPEKSSDRDHERNRGRGSDKEAHQERVSDRELGGERKERSSRQEAKD---- 128

Query: 274 KLGRNEASNQSSRSRRDRSTSPLDRPPRSRHRSPQSADGSWARHEVMNSGGAEYRNDDID 333
                    +SSRSR   S+SP +R  R+RHRSP     +    E  NS   E R+DD D
Sbjct: 129 --------GKSSRSRHGNSSSPSERHQRNRHRSPSPQPDAKNHDEGRNSRRPESRSDDDD 180

Query: 334 SVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVF 393
           SVA+MKAAE+AL+AK+K KPSFELSGKLAAETNR RG+TLLFNEPPDARKP VRWRLYVF
Sbjct: 181 SVAKMKAAEQALEAKQKDKPSFELSGKLAAETNRVRGITLLFNEPPDARKPDVRWRLYVF 240

Query: 394 KAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYY 453
           KAGE+L EPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQ D  ++  
Sbjct: 241 KAGEVLNEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQSD-GTLSK 299

Query: 454 CMRTRMIDWHQGTFCMKEVPDFFLE 478
            +R  ++D   G+     + D  +E
Sbjct: 300 HVRPYLMDL--GSTNKTYINDAAIE 322

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359485662|ref|XP_002273806.2| PREDICTED: FHA domain-containing protein DDL-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297739294|emb|CBI28945.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530653|ref|XP_003533895.1| PREDICTED: uncharacterized protein LOC100812104 [Glycine max] Back     alignment and taxonomy information
>gi|357459335|ref|XP_003599948.1| FHA domain-containing protein DDL [Medicago truncatula] gi|355488996|gb|AES70199.1| FHA domain-containing protein DDL [Medicago truncatula] Back     alignment and taxonomy information
>gi|297835002|ref|XP_002885383.1| hypothetical protein ARALYDRAFT_479579 [Arabidopsis lyrata subsp. lyrata] gi|297331223|gb|EFH61642.1| hypothetical protein ARALYDRAFT_479579 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356569853|ref|XP_003553109.1| PREDICTED: uncharacterized protein LOC100780414 [Glycine max] Back     alignment and taxonomy information
>gi|255564007|ref|XP_002523003.1| nuclear inhibitor of protein phosphatase-1, putative [Ricinus communis] gi|223537815|gb|EEF39433.1| nuclear inhibitor of protein phosphatase-1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242090203|ref|XP_002440934.1| hypothetical protein SORBIDRAFT_09g017160 [Sorghum bicolor] gi|241946219|gb|EES19364.1| hypothetical protein SORBIDRAFT_09g017160 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|294461652|gb|ADE76386.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query497
TAIR|locus:2085740314 DDL "AT3G20550" [Arabidopsis t 0.267 0.423 0.674 1.6e-53
UNIPROTKB|F1P3G6373 SNIP1 "Uncharacterized protein 0.189 0.252 0.642 1e-36
UNIPROTKB|Q8TAD8396 SNIP1 "Smad nuclear-interactin 0.189 0.237 0.642 3.5e-36
MGI|MGI:2156003383 Snip1 "Smad nuclear interactin 0.189 0.245 0.642 5.7e-36
UNIPROTKB|E2R797397 SNIP1 "Uncharacterized protein 0.223 0.279 0.575 3.1e-35
RGD|1359268389 Snip1 "Smad nuclear interactin 0.189 0.241 0.642 3.1e-35
UNIPROTKB|E1BNB3399 SNIP1 "Uncharacterized protein 0.189 0.235 0.642 5e-35
FB|FBgn0039943421 CG17168 [Drosophila melanogast 0.223 0.263 0.504 1.9e-33
WB|WBGene00016323299 C32E8.5 [Caenorhabditis elegan 0.239 0.397 0.512 6.9e-32
UNIPROTKB|I3LQU1261 SNIP1 "Uncharacterized protein 0.189 0.360 0.642 1.1e-31
TAIR|locus:2085740 DDL "AT3G20550" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 467 (169.5 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 91/135 (67%), Positives = 104/135 (77%)

Query:   315 ARH-EVMNS-GGAEYRNDDIDSVXXXXXXXXXXXXXXXXXPSFELSGKLAAETNRFRGVT 372
             +RH E  N+ GG+E  N + DSV                 PSFELSGKLA ETNR+RG+T
Sbjct:   121 SRHDEGSNARGGSEEPNVEEDSVARMRAVEEALAAKKKEEPSFELSGKLAEETNRYRGIT 180

Query:   373 LLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQ 432
             LLFNEPP+ARKPS RWRLYVFK GE L EPL +HRQSCYLFGRERR+ADIPTDHPSCSKQ
Sbjct:   181 LLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSKQ 240

Query:   433 HAVIQFRQVEKEQPD 447
             HAVIQ+R++EKE+PD
Sbjct:   241 HAVIQYREMEKEKPD 255
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0008283 "cell proliferation" evidence=IMP
GO:0048638 "regulation of developmental growth" evidence=IMP
GO:0005829 "cytosol" evidence=IDA
GO:0003723 "RNA binding" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP;IDA
GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
GO:0006306 "DNA methylation" evidence=RCA
GO:0006342 "chromatin silencing" evidence=RCA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA
GO:0007267 "cell-cell signaling" evidence=RCA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010048 "vernalization response" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0016569 "covalent chromatin modification" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0030422 "production of siRNA involved in RNA interference" evidence=RCA
GO:0031047 "gene silencing by RNA" evidence=RCA
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
GO:0048573 "photoperiodism, flowering" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
UNIPROTKB|F1P3G6 SNIP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TAD8 SNIP1 "Smad nuclear-interacting protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2156003 Snip1 "Smad nuclear interacting protein 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R797 SNIP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1359268 Snip1 "Smad nuclear interacting protein 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BNB3 SNIP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0039943 CG17168 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00016323 C32E8.5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|I3LQU1 SNIP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
cd00060102 cd00060, FHA, Forkhead associated domain (FHA); fo 2e-08
PRK12678 672 PRK12678, PRK12678, transcription termination fact 3e-06
PRK12678 672 PRK12678, PRK12678, transcription termination fact 7e-05
PRK12678 672 PRK12678, PRK12678, transcription termination fact 1e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 4e-04
PRK12678672 PRK12678, PRK12678, transcription termination fact 8e-04
PRK12678 672 PRK12678, PRK12678, transcription termination fact 0.001
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 0.001
pfam10243506 pfam10243, MIP-T3, Microtubule-binding protein MIP 0.002
smart0024052 smart00240, FHA, Forkhead associated domain 0.003
TIGR01622 457 TIGR01622, SF-CC1, splicing factor, CC1-like famil 0.003
TIGR01642 509 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, la 0.004
pfam0049867 pfam00498, FHA, FHA domain 0.004
>gnl|CDD|238017 cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information 
 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 387 RWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFR 439
             RL V           Y+     Y  GR+    DI  D PS S++HAVI++ 
Sbjct: 1   VPRLVVLSGDA-SGRRYYLDPGGTYTIGRDSDNCDIVLDDPSVSRRHAVIRYD 52

Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation). Length = 102
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 Back     alignment and domain information
>gnl|CDD|214578 smart00240, FHA, Forkhead associated domain Back     alignment and domain information
>gnl|CDD|233496 TIGR01622, SF-CC1, splicing factor, CC1-like family Back     alignment and domain information
>gnl|CDD|233503 TIGR01642, U2AF_lg, U2 snRNP auxilliary factor, large subunit, splicing factor Back     alignment and domain information
>gnl|CDD|215951 pfam00498, FHA, FHA domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 497
KOG1882293 consensus Transcriptional regulator SNIP1, contain 100.0
KOG1881 793 consensus Anion exchanger adaptor protein Kanadapt 99.58
PF0049868 FHA: FHA domain; InterPro: IPR000253 The forkhead- 99.54
cd00060102 FHA Forkhead associated domain (FHA); found in euk 99.35
KOG1880 337 consensus Nuclear inhibitor of phosphatase-1 [Gene 99.32
smart0024052 FHA Forkhead associated domain. Found in eukaryoti 99.17
TIGR03354 396 VI_FHA type VI secretion system FHA domain protein 99.16
PLN02927668 antheraxanthin epoxidase/zeaxanthin epoxidase 99.09
COG1716191 FOG: FHA domain [Signal transduction mechanisms] 99.04
COG3456 430 Predicted component of the type VI protein secreti 98.64
KOG0615 475 consensus Serine/threonine protein kinase Chk2 and 97.56
TIGR02500 410 type_III_yscD type III secretion apparatus protein 97.44
KOG0245 1221 consensus Kinesin-like protein [Cytoskeleton] 90.96
KOG2293547 consensus Daxx-interacting protein MSP58/p78, cont 80.86
>KOG1882 consensus Transcriptional regulator SNIP1, contains FHA domain [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-40  Score=323.69  Aligned_cols=164  Identities=49%  Similarity=0.767  Sum_probs=145.7

Q ss_pred             ccCCCCCcccCCCcchHHhhhHHHHHHhhhhccCCCcccccchhhhcccccccccccCCCCCCCCCCcceEEEEeecCcc
Q 010907          319 VMNSGGAEYRNDDIDSVAQMKAAEEALQAKEKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEM  398 (497)
Q Consensus       319 ~~n~~~~~~~~~~DDSi~~~~~~ee~~eEkeKekPnFepSG~La~eSNtv~GVtLKYsEPpdArkP~~~WrLyVfKGGe~  398 (497)
                      +.|++..+.+.-- ++  .+..+.++.+.+.|++|+|++||+|++++|++.||+|+|++|++|.+|...|.||+||+++.
T Consensus       108 ~~~~r~~e~~~nn-~~--k~~~~~k~~~~~dke~p~f~lsg~l~E~tn~~~gv~v~y~eppearkP~kRwrLy~fk~~e~  184 (293)
T KOG1882|consen  108 FSNARLRELESNN-GG--KEGIALKEVEPQDKEKPSFELSGALLEDTNRFRGVVVKYNEPPEARKPKKRWRLYPFKCYEV  184 (293)
T ss_pred             ccchhhhhhcccc-cC--CccccccccCchhccCCchhhchhhhhhhcceeeEEEEecCCchhcCchhheecccccCCcc
Confidence            6777776533222 22  45555566667789999999999999999999999999999999999999999999999998


Q ss_pred             ccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCC-C
Q 010907          399 LKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPD-F  475 (497)
Q Consensus       399 l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~-~  475 (497)
                      + ++++||.++||||||+..++||.|+||+||+|||||||+.++.+-++|+ ++..|++||||  |+||||||+.+|. .
T Consensus       185 l-~~l~iHrqs~yL~gRerkIaDi~idhpScSKQHaviQyR~v~~~r~dGt-~grrvkpYiiDLgS~NgTfLNnk~Iepq  262 (293)
T KOG1882|consen  185 L-PVLYIHRQSCYLDGRERKIADIPIDHPSCSKQHAVIQYRLVEFTRADGT-VGRRVKPYIIDLGSGNGTFLNNKVIEPQ  262 (293)
T ss_pred             c-chheeeeeeeeecCceeeeeccCCCCccccccceeeeeeecccccCCCc-cceeeeeEEEecCCCCcceecCcccCch
Confidence            8 6899999999999999999999999999999999999999988888997 88899999999  9999999999986 7


Q ss_pred             ceeccCCCCEEe
Q 010907          476 FLEELNSATRVG  487 (497)
Q Consensus       476 ~yleLrdGDrIG  487 (497)
                      .|++|..+|+|-
T Consensus       263 RYyEL~ekDvlk  274 (293)
T KOG1882|consen  263 RYYELREKDVLK  274 (293)
T ss_pred             heeeeecCceee
Confidence            899999998754

>KOG1881 consensus Anion exchanger adaptor protein Kanadaptin, contains FHA domain [General function prediction only] Back     alignment and domain information
>PF00498 FHA: FHA domain; InterPro: IPR000253 The forkhead-associated (FHA) domain [] is a phosphopeptide recognition domain found in many regulatory proteins Back     alignment and domain information
>cd00060 FHA Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins Back     alignment and domain information
>KOG1880 consensus Nuclear inhibitor of phosphatase-1 [General function prediction only] Back     alignment and domain information
>smart00240 FHA Forkhead associated domain Back     alignment and domain information
>TIGR03354 VI_FHA type VI secretion system FHA domain protein Back     alignment and domain information
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase Back     alignment and domain information
>COG1716 FOG: FHA domain [Signal transduction mechanisms] Back     alignment and domain information
>COG3456 Predicted component of the type VI protein secretion system, contains a FHA domain [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms] Back     alignment and domain information
>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR02500 type_III_yscD type III secretion apparatus protein, YscD/HrpQ family Back     alignment and domain information
>KOG0245 consensus Kinesin-like protein [Cytoskeleton] Back     alignment and domain information
>KOG2293 consensus Daxx-interacting protein MSP58/p78, contains FHA domain [Transcription; Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
3vpy_A145 Crystal Structure Of Arabidopsis Ddl Fha Domain Len 2e-34
3elv_A205 Crystal Structure Of Full-Length Yeast Pml1p Length 6e-06
2jkd_A187 Structure Of The Yeast Pml1 Splicing Factor And Its 8e-06
2jpe_A140 Fha Domain Of Nipp1 Length = 140 2e-04
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain Length = 145 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (361), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 64/77 (83%), Positives = 70/77 (90%)
Query: 372 TLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSK 431
           TLLFNEPP+ARKPS RWRLYVFK GE L EPL +HRQSCYLFGRERR+ADIPTDHPSCSK
Sbjct: 1   TLLFNEPPEARKPSERWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSK 60
Query: 432 QHAVIQFRQVEKEQPDA 448
           QHAVIQ+R+ EKE+PD 
Sbjct: 61  QHAVIQYREXEKEKPDG 77
>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p Length = 205 Back     alignment and structure
>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its Integration Into The Res Complex Length = 187 Back     alignment and structure
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1 Length = 140 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query497
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 2e-26
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 7e-22
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 7e-18
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Length = 140 Back     alignment and structure
 Score =  103 bits (258), Expect = 2e-26
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 355 FELSGKLAAETNRFRGVTLLFNEPPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFG 414
                 +AA  N    +  LF+ P  A KP     L V K  +++ E L I  +  YLFG
Sbjct: 3   LGSPNSMAAAVNSGSSL-PLFDCPTWAGKPPPGLHLDVVKGDKLI-EKLIIDEKKYYLFG 60

Query: 415 RERRVADIPTDHPSCSKQHAVIQFRQVEK 443
           R   + D   DH SCS+ HA + + +  K
Sbjct: 61  RNPDLCDFTIDHQSCSRVHAALVYHKHLK 89
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Length = 205 Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Length = 158 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
3elv_A205 PRE-mRNA leakage protein 1; intrinsically unstruct 100.0
4h87_A130 Kanadaptin; FHA domain of PF00498, mRNA processing 99.94
3els_A158 PRE-mRNA leakage protein 1; intrinsically unstruct 99.93
2jpe_A140 Nuclear inhibitor of protein phosphatase 1; FHA do 99.87
3gqs_A106 Adenylate cyclase-like protein; FHA domain, struct 99.79
2kfu_A162 RV1827 PThr 22; FHA domain, phosphorylation, intra 99.73
1uht_A118 Expressed protein; FHA domain, beta-sandwich, anti 99.71
1g3g_A164 Protien kinase SPK1; FHA domain, RAD53, phosphopep 99.7
2xt9_B115 Putative signal transduction protein GARA; lyase-s 99.7
2jqj_A151 DNA damage response protein kinase DUN1; protein/p 99.69
2kb3_A143 Oxoglutarate dehydrogenase inhibitor; forkhead-ass 99.69
1r21_A128 Antigen KI-67; beta sandwich, cell cycle; NMR {Hom 99.68
3va4_A132 Mediator of DNA damage checkpoint protein 1; cell 99.68
1gxc_A149 CHK2, CDS1, serine/threonine-protein kinase CHK2; 99.66
1mzk_A139 Kinase associated protein phosphatase; beta sandwi 99.65
1lgp_A116 Cell cycle checkpoint protein CHFR; FHA, tungstate 99.64
2csw_A145 Ubiquitin ligase protein RNF8; 11-stranded beta sa 99.64
3hx1_A131 SLR1951 protein; P74513_SYNY3, adenylate cyclase-l 99.64
3po8_A100 RV0020C protein, putative uncharacterized protein 99.63
1dmz_A158 Protein (protein kinase SPK1); beta-sandwich, anti 99.61
1qu5_A182 Protein kinase SPK1; FHA, RAD53, transferase; NMR 99.6
2pie_A138 E3 ubiquitin-protein ligase RNF8; FHA domain, comp 99.6
3oun_A157 Putative uncharacterized protein TB39.8; peptidogl 99.58
1wln_A120 Afadin; beta sandwich, FHA domain, structural geno 99.56
4ejq_A154 Kinesin-like protein KIF1A; homodimer, FHA domain, 99.55
1g6g_A127 Protein kinase RAD53; beta-sandwich, phosphopeptid 99.54
2ff4_A388 Probable regulatory protein EMBR; winged-helix, te 99.52
3huf_A 325 DNA repair and telomere maintenance protein NBS1; 99.48
3fm8_A124 Kinesin-like protein KIF13B; kinesin, GAP, GTPase 99.46
4a0e_A123 YSCD, type III secretion protein; transport protei 99.31
3uv0_A102 Mutator 2, isoform B; FHA, protein binding, dimeri 99.24
3i6u_A 419 CDS1, serine/threonine-protein kinase CHK2; Ser/Th 99.18
4egx_A184 Kinesin-like protein KIF1A; FHA domain, transport 98.76
3kt9_A102 Aprataxin; FHA domain, beta sandwich, beta sheet, 98.68
2brf_A110 Bifunctional polynucleotide phosphatase/kinase; hy 98.62
1yj5_C143 5' polynucleotide kinase-3' phosphatase FHA domai; 98.55
1wv3_A238 Similar to DNA segregation ATPase and related prot 98.37
1ujx_A119 Polynucleotide kinase 3'-phosphatase; DNA repair, 98.36
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A Back     alignment and structure
Probab=100.00  E-value=6e-34  Score=269.48  Aligned_cols=130  Identities=33%  Similarity=0.436  Sum_probs=87.4

Q ss_pred             hccCCCcccccchhhhcccccccccccCCCCCCCCCCcc-------------eEEEEeecCcc---ccceEEeeccceee
Q 010907          349 EKQKPSFELSGKLAAETNRFRGVTLLFNEPPDARKPSVR-------------WRLYVFKAGEM---LKEPLYIHRQSCYL  412 (497)
Q Consensus       349 eKekPnFepSG~La~eSNtv~GVtLKYsEPpdArkP~~~-------------WrLyVfKGGe~---l~eti~L~rqs~Yl  412 (497)
                      .|++|||++||+|+.++|+++||+|+|+||+||++|...             |.|+|||+|..   ..+.|.|..+++|+
T Consensus        27 ~~~~pnf~~sg~L~~~~n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~~~s~y~  106 (205)
T 3elv_A           27 IDIMPDFSPSGLLELESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYL  106 (205)
T ss_dssp             -------------------------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECSSCSEEE
T ss_pred             ccccCCCcccccchhhhcccccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEecCCCcee
Confidence            369999999999999999999999999999999999653             66999998862   22589998889999


Q ss_pred             ecCCC--------------CccceecCCCccccCceEEEEecccccCCccccccccceeEEEe--CCCCeeecCccCC-C
Q 010907          413 FGRER--------------RVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMID--WHQGTFCMKEVPD-F  475 (497)
Q Consensus       413 IGRd~--------------~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLiD--STNGTFVNGeRI~-~  475 (497)
                      |||++              .+|||+|+||+||++||+|+|...     .+     .+.|||+|  |||||||||++|. .
T Consensus       107 IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~-----~~-----~~~~~l~DLgStNGTfVNG~rI~~~  176 (205)
T 3elv_A          107 VGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNV-----RG-----ILKCYVMDLDSSNGTCLNNVVIPGA  176 (205)
T ss_dssp             EEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEE-----TT-----EEEEEEEECSCSSCCEETTEECCBT
T ss_pred             ecccccccccccccccccCccceEEeCCCCCCcccEEEEEecC-----CC-----ceeEEEEeCCCCCCCeECCEECCCC
Confidence            99995              369999999999999999999752     11     23589999  9999999999987 4


Q ss_pred             ceeccCCCCEEec
Q 010907          476 FLEELNSATRVGR  488 (497)
Q Consensus       476 ~yleLrdGDrIG~  488 (497)
                      .++.|.+||+|-.
T Consensus       177 ~~~~L~~GD~I~f  189 (205)
T 3elv_A          177 RYIELRSGDVLTL  189 (205)
T ss_dssp             SCEECCTTCEEES
T ss_pred             ceeECCCCCEEEE
Confidence            6688999987543
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens} Back     alignment and structure
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae} Back     alignment and structure
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus} Back     alignment and structure
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis} Back     alignment and structure
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A Back     alignment and structure
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2 Back     alignment and structure
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A* Back     alignment and structure
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis} Back     alignment and structure
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A* Back     alignment and structure
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A Back     alignment and structure
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A* Back     alignment and structure
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B Back     alignment and structure
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A Back     alignment and structure
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP} Back     alignment and structure
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A Back     alignment and structure
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A* Back     alignment and structure
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2 Back     alignment and structure
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Back     alignment and structure
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A Back     alignment and structure
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2 Back     alignment and structure
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Back     alignment and structure
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A* Back     alignment and structure
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A* Back     alignment and structure
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A Back     alignment and structure
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster} Back     alignment and structure
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Back     alignment and structure
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens} Back     alignment and structure
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0 Back     alignment and structure
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A* Back     alignment and structure
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4 Back     alignment and structure
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 497
d1uhta_118 b.26.1.2 (A:) FHA domain containing protein At4G14 1e-06
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 15/78 (19%), Positives = 22/78 (28%), Gaps = 1/78 (1%)

Query: 378 PPDARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQ 437
              +   +   RL   K G    + L     S    GR  R  +I       S +H  I+
Sbjct: 3   SGSSGMVTPSLRLVFVK-GPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIE 61

Query: 438 FRQVEKEQPDAASMYYCM 455
                    D  S    +
Sbjct: 62  SDSGNWVIQDLGSSNGTL 79

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query497
d1uhta_118 FHA domain containing protein At4G14490 {Thale cre 99.74
d2ff4a399 Probable regulatory protein EmbR, C-terminal domai 99.65
d1lgpa_113 Cell cycle checkpoint protein Chfr {Human (Homo sa 99.65
d1gxca_116 Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} 99.63
d1mzka_122 Kinase associated protein phosphatase {Thale cress 99.62
d1dmza_158 Phosphotyrosine binding domain of Rad53 {Baker's y 99.59
d2piea1127 Ubiquitin ligase protein RNF8 {Human (Homo sapiens 99.56
d2affa198 Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} 99.54
d1g6ga_127 Phosphotyrosine binding domain of Rad53 {Baker's y 99.51
d2g1la1102 Kinesin-like protein kif1c {Human (Homo sapiens) [ 99.47
d2brfa1101 Polynucleotide kinase 3'-phosphatase {Human (Homo 99.45
d1wlna1107 Afadin {Mouse (Mus musculus) [TaxId: 10090]} 99.36
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All beta proteins
fold: SMAD/FHA domain
superfamily: SMAD/FHA domain
family: FHA domain
domain: FHA domain containing protein At4G14490
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.74  E-value=1.8e-18  Score=147.22  Aligned_cols=97  Identities=19%  Similarity=0.122  Sum_probs=77.0

Q ss_pred             CCCCCcceEEEEeecCccccceEEeeccceeeecCCCCccceecCCCccccCceEEEEecccccCCccccccccceeEEE
Q 010907          381 ARKPSVRWRLYVFKAGEMLKEPLYIHRQSCYLFGRERRVADIPTDHPSCSKQHAVIQFRQVEKEQPDAASMYYCMRTRMI  460 (497)
Q Consensus       381 ArkP~~~WrLyVfKGGe~l~eti~L~rqs~YlIGRd~~vcDIvLdhPSVSRqHAVIQfr~~eken~dG~~~~~~IrpYLi  460 (497)
                      +....+.++|.+..+.... ..+.|.....|+|||+...|||+|+|++||++||.|.|..       +       .|||.
T Consensus         6 ~g~~~p~l~L~v~~Gp~~g-~~~~l~~~~~~~iGR~~~~~di~l~d~~VSr~Ha~i~~~~-------~-------~~~i~   70 (118)
T d1uhta_           6 SGMVTPSLRLVFVKGPREG-DALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-------G-------NWVIQ   70 (118)
T ss_dssp             CCCCSCEEEEEESSSTTTT-CBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEECS-------S-------SEEEE
T ss_pred             CCCCCCcEEEEEEeCCCCC-cEEEeCCCCEEEECCCCcCCeEEeCccCcchheeEEEEEC-------C-------EEEEE
Confidence            3344456889998876544 5788877777999998546999999999999999999863       3       48999


Q ss_pred             e--CCCCeeecCccCC-CceeccCCCC--EEeceEee
Q 010907          461 D--WHQGTFCMKEVPD-FFLEELNSAT--RVGRCYLS  492 (497)
Q Consensus       461 D--STNGTFVNGeRI~-~~yleLrdGD--rIG~t~Ls  492 (497)
                      |  |+|||||||++|. ...+.|.+||  .||.+.+-
T Consensus        71 Dl~S~nGT~vng~~l~~~~~~~L~~Gd~i~lG~~~~~  107 (118)
T d1uhta_          71 DLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSI  107 (118)
T ss_dssp             CCCCSSCCEESSSBCCTTCEEECCTTEEEEETTTEEE
T ss_pred             ECCCcceeEECCEEcCCCcEEECCCCCEEEECCEEEE
Confidence            9  9999999999975 4567799997  57766553
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR, C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlna1 b.26.1.2 (A:8-114) Afadin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure