Citrus Sinensis ID: 010974

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDEQNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQIKNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENSNSISVHAKSFCKKRKRAARYKKSRIRNFPDQVAQTTQKSDISSTTLLNAVDNYVKHKEESKIFGNNIQMTPASLSALNSPSDTTEMILQSGCEEVPKSDTVQTTTNNDDLLIDRLKLTRQESGPAELTEMSACKTDLEAVNLSPLNSNVKSSNLTEGVSSQSLNDKFLKYTFQRKRKKESLSSPDGYSSLEEGVMKRRMVVNPNGSVESENPSLITESS
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccHHHccccHHHHHHHHHHHcccccccccHHHHHHHcccccHHHHHHHHccccccccccccccccccHHHHccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHcccccccccccccccccccHHccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEcccccccccccccccccccccccccEEEcccccccccccccccEEcccccccccccccccccHHHHHHcccccHHHcccHHHHHHHHHHccccccccccccHHHHcccccEEEccHHHHHHccccccccccccccccccccEcccccccEEEEEEEEcccccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccEEEEcccEEcccccHHHHHccccHHHHHHHHcccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEEHHHHHHHHHcccccccccccccccHHcccccccccccccccccccccc
Coil and Loop (DISEMBL)
MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLldeqnstgdvatvmtpslenrlntseaampclpdvqpdsvmasdvgnstlngtyenkmcysengshkdncyfcnsSFASIVmrrkepklyrngCTQRIHAFERNIlegnlslpgqveqqikngsctqeDEELCKNLDrganqtcriednpnesrlkqensnSISVHAKSFCKKRKRAARYKKSrirnfpdqvaqttqksdissttLLNAVDNYVKHKEeskifgnniqmtpaslsalnspsdtTEMILQSgceevpksdtvqtttnndDLLIDRLKltrqesgpaelteMSACktdleavnlsplnsnvkssnltegvssqslnDKFLKYTFQrkrkkeslsspdgyssleEGVMKRRmvvnpngsvesenpslitess
Flexible Loop (DISEMBL)
MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATynekqlldeqnstgdVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQIKNGSCTQEDEELCKNLDRGANQtcriednpnesrlkqensnsisvhaksfckkRKRAarykksrirnfpdqvaqttqksdissttlLNAVDNYVKHKEESKIFGNNIQMTPASLSALNSPSDTTEMILQSGCeevpksdtvqtttnnddlliDRLKLTRQESGPAELTEMSACKTDLEAVNLSPLNSNVKssnltegvssqslndKFLKYTfqrkrkkeslsspdgyssleegvMKRRMVvnpngsvesenpslitess
Low Complexity Region (SEG)
MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDEQNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQIKNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENSNSISVHAKSFCkkrkraarykksrirNFPDQVAQTTQKSDISSTTLLNAVDNYVKHKEESKIFGNNIQMTPASLSALNSPSDTTEMILQSGCEEVPKSDTVQTTTNNDDLLIDRLKLTRQESGPAELTEMSACKTDLEAVNLSPLNSNVKSSNLTEGVSSQSLNDKFLKYTFQRKRKKESLSSPDGYSSLEEGVMKRRMVVNPNGSVESENPSLITESS
Disordered region (IsUnstruct)
********ALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQL**********************************************************************************GTYENKMCYSENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSL*********************************************************************************************LLNAVDNYVK********************************************************************************************************************************************************************
Disordered Region (DISOPRED)
***********KAYADIILNTAK*AA****VSE**************EDALRMLLRLKQMLD*************************E*EDIVKDLRA**********************************************************************************************SFA**VMRRKEPKLYRNGCT******************************************************************************************************************************************************************************************************************************************YTF***********************************************
Disordered Region (DISEMBL)
********ALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDEQNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQIKNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENSNSISVHAKSFCKKRKRAARYKKSRIRNFPD**********ISSTTLLNAVDNYVKHKEESKIFGNNIQMTPASLSALNSPSDTTEMILQSGCEEVPKSDTVQTTTNNDDLLIDRLKLTRQESGPAELTEMSACKTDLEAVNLSPLNSNVKSSNLTEGVSSQSLNDKFLKYTFQR*************SSLEEGVMKRRMVVNPNG**************
Disordered Region (DISPRO)
****EKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL******GDVATVMTP**********AAMPCLP*V*PDSVMAS***NSTLNGTYENKMCYSENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQIKNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENSNSISVHAKSFCKKR************************************************************SA*NSPSDTTEMILQSGCEEVPKSDTVQTTTNNDDLLIDRLKLTR******ELTEMSACKTDLEAVNLSPL*******************DKFLKYTFQRKRKKE****************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQIKNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENSNSISVHAKSFCKKRKRAARYKKSRIRNFPDQVAQTTQKSDISSTTLLNAVDNYVKHKEESKIFGNNIQMTPASLSALNSPSDTTEMILQSGCEEVPKSDTVQTTTNNDDLLIDRLKLTRQESGPAELTEMSACKTDLEAVNLSPLNSNVKSSNLTEGVSSQSLNDKFLKYTFQRKRKKESLSSPDGYSSLEEGVMKRRMVVNPNGSVESENPSLITESS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
255540823	559	conserved hypothetical protein [Ricinus	0.993	0.881	0.459	1e-106
359491625	531	PREDICTED: uncharacterized protein LOC10	0.989	0.924	0.475	1e-101
356512825	523	PREDICTED: uncharacterized protein LOC10	0.979	0.929	0.433	5e-85
449469677	507	PREDICTED: uncharacterized protein LOC10	0.923	0.903	0.420	2e-76
449487869	487	PREDICTED: uncharacterized protein LOC10	0.893	0.909	0.413	6e-74
297733859	422	unnamed protein product [Vitis vinifera]	0.449	0.528	0.576	8e-63
224055519	616	predicted protein [Populus trichocarpa]	0.620	0.5	0.400	8e-48
224140893	595	predicted protein [Populus trichocarpa]	0.633	0.527	0.416	4e-47
356573435	533	PREDICTED: uncharacterized protein LOC10	0.433	0.403	0.482	2e-44
297839361	401	hypothetical protein ARALYDRAFT_476622 [	0.467	0.578	0.433	2e-40

>gi|255540823|ref|XP_002511476.1| conserved hypothetical protein [Ricinus communis] gi|223550591|gb|EEF52078.1| conserved hypothetical protein [Ricinus communis]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/529 (45%), Positives = 318/529 (60%), Gaps = 36/529 (6%)

Query: 1   MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
           M+DSEKL ALKKAYADIILN+AKEAAARIMVSERK  RYQ+ELFAAK++ALRMLLRLKQM
Sbjct: 1   MADSEKLTALKKAYADIILNSAKEAAARIMVSERKAQRYQRELFAAKDEALRMLLRLKQM 60

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDE 120
           LD+KV+EA++ SL QQR+I+ELEAQLGEAEDIVKDLR++LRE QDELE+   ++ + L+E
Sbjct: 61  LDSKVSEAEMASLNQQRRIEELEAQLGEAEDIVKDLRSELRELQDELEKVANSQMRPLEE 120

Query: 121 QNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSEN 180
           QN  G+  T++T   ENRL+TS + +P  P  Q D V+  +  N TLNGT      YSE 
Sbjct: 121 QNPEGERTTLVTAFEENRLSTSGSVIPSGPASQSDPVITLETKNLTLNGTCAGTRLYSEG 180

Query: 181 GSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQIKNG 240
              KDNC+ CN  FASIVMR KEP+LYRNGCTQRI AFER++L GNLSL GQ +  +KN 
Sbjct: 181 DCRKDNCFVCNPDFASIVMRSKEPELYRNGCTQRIRAFERSLLGGNLSLSGQ-DDDVKNQ 239

Query: 241 SCT---QEDEELCKNLDRGANQTCRIEDNP-----NESRLKQENSNSISVHAKSFCKKRK 292
                 +ED+++ K L    ++ C +E  P     N  R K+  + S+S  A     ++ 
Sbjct: 240 VFIIEDKEDKDIRKQLTAKVDRICDVEKIPGLVKGNSIRKKRRKNPSVSGQADGIKNQKS 299

Query: 293 RAARYKKSRI------------------RNFPDQVAQTTQKSDISSTTLLNAVDNYVKHK 334
                K   I                  R+   + A   ++     + L  AVDN V+  
Sbjct: 300 IREETKDKYIFTCLPVKADSCCHGGYIPRSLKRKRAARYRRHREYRSFLHEAVDNNVQTA 359

Query: 335 EESKIFGNNIQMTPASLSALNSPSDTTEMILQSGCEEV-------PKSDTVQTTTNNDDL 387
           E+S+         P       SPSDT E + QSG  EV        ++ + Q  +NND  
Sbjct: 360 EDSRKIDYISLKDPQPPVLPKSPSDTNEKVNQSGSFEVIGREAEFGRTCSFQNISNNDSF 419

Query: 388 LIDRLKLTRQESGPAELTEMSACKTDLEAVNLSPLNSNVKSSNLTEGVSSQSLNDKFLKY 447
            ID L+L  +++G AE +E  A + D +  ++ P NS++K       VS         KY
Sbjct: 420 PIDELQLAGRDAGTAECSEFPASRNDFQIASVLPSNSHLKEPGTIVAVSPHP--QPLFKY 477

Query: 448 TFQRKRKKESLSSPDGYSSLEEGVMKRRMVVNPNGSVESENPSLITESS 496
           TFQRKRKKE LSS DG +S     +K++M    +GS+ES+N SLI ESS
Sbjct: 478 TFQRKRKKEFLSSSDGETSFGNHTLKKKMGEKQSGSLESDNSSLIAESS 526

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491625|ref|XP_002280572.2| PREDICTED: uncharacterized protein LOC100246721 [Vitis vinifera]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 244/513 (47%), Positives = 321/513 (62%), Gaps = 22/513 (4%)

Query: 1   MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
           M DSEKL ALKKAYA+ ILNTAKEAAARIMVSERK +  QQ+LF AKE+ALRML+RLKQM
Sbjct: 1   MEDSEKLTALKKAYAETILNTAKEAAARIMVSERKALSSQQDLFMAKEEALRMLVRLKQM 60

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDE 120
           +D+K+ EA+++SL QQ+KI+ELEAQL EAEDIV++LR +LRE Q+ LE+ T  + Q LDE
Sbjct: 61  MDSKIGEAKMISLSQQKKIEELEAQLEEAEDIVRELREELREVQNALEKMTKKQLQALDE 120

Query: 121 QNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSEN 180
           ++  G+  T +    E +L+ S + +      +P+ V  SD+ NST N   E   CY  N
Sbjct: 121 KSFKGNAGTEVEAPQEYKLSASASLILPRTGSRPEPVTTSDLKNSTFNKRNEGNKCYGAN 180

Query: 181 GSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQI--- 237
            S+ +NC+  N  FASIV R KEP+LYRNGCTQRI AFE ++LEG LSL GQV+  +   
Sbjct: 181 DSYMENCFVANRDFASIVTRSKEPELYRNGCTQRIRAFESSLLEGKLSLSGQVDGAMNET 240

Query: 238 -KNGSCTQEDEELCKNLDRGANQTCRIEDNPNESR-LKQENSNSISVHA-KSFCKKRKRA 294
                    +     ++ +  N  CR+E NP+E++ ++QE+ N   V A KSF +KRKRA
Sbjct: 241 TIGEEEEGGEGIYMTSIPKDDN-VCRMERNPDEAKEIRQEDGNLYPVQAIKSFRRKRKRA 299

Query: 295 ARY--KKSRIRNFPDQVAQTTQKSDIS-STTLLNAVDNYVKHKE-ESKIFGNNIQMTPAS 350
            RY  K        DQV +T Q SD+S S T   A+ N ++  E  S    N  Q  P S
Sbjct: 300 VRYSNKAPSSTCLLDQVTETHQASDLSFSKTYHYAITNDLQSGETPSNRTANESQKDPES 359

Query: 351 LSALNSPSDTTEMILQSGCEEVPKSD-------TVQTTTNNDDLLIDRLKLTRQESGPAE 403
            +AL  PSD TE   QS C EV ++D       + ++T N + +LID   L+RQESG  E
Sbjct: 360 PAALKLPSDATETSKQSECIEVAENDAEFVKACSARSTLNKNKVLIDDTVLSRQESGSLE 419

Query: 404 LTEMSACKTDLEAVNLSPLNSNVKSSNLTEGVSSQSLNDKFLKYTFQRKRKKESLSSPDG 463
           ++E   C  DLE  N+S +NS++K S  T+ V SQ +    LKYTF+RKRKKE+L   DG
Sbjct: 420 ISEAHNCTMDLETANVSVVNSDLKVSVKTDVVLSQPV----LKYTFRRKRKKETLGHADG 475

Query: 464 YSSLEEGVMKRRMVVNPNGSVESENPSLITESS 496
             SLE+  +KR      NG  E +  SLI ESS
Sbjct: 476 NISLEKNTLKRSTDETQNGPSEPQQASLIPESS 508

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512825|ref|XP_003525116.1| PREDICTED: uncharacterized protein LOC100783348 [Glycine max]

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 221/510 (43%), Positives = 312/510 (61%), Gaps = 24/510 (4%)

Query: 1   MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
           M DSEKL ALKKAYADIILNTAKEAAARIMVSERK  R+QQEL + KE+ALRMLLRLKQM
Sbjct: 1   MEDSEKLTALKKAYADIILNTAKEAAARIMVSERKVTRFQQELVSTKEEALRMLLRLKQM 60

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDE 120
            D+KV+EA+++SL QQ+KI+ELEAQL EAE+IV+DLRA+LRE Q ELE  T ++ Q L E
Sbjct: 61  FDSKVSEAELMSLNQQKKIEELEAQLQEAEEIVRDLRAELRETQAELENVTKHQMQPLVE 120

Query: 121 QNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYE-NKMCYSE 179
           QN+  +VA   +   +NRL+  + ++   P +Q +SV  S+  N  +NG+ + +K C S 
Sbjct: 121 QNTEAEVAAQESFLQKNRLDPYDGSIYSAPGLQFESVSISENRNPIVNGSNDSSKFCGSH 180

Query: 180 NGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQIKN 239
           +  H +NCY  N  FASIV+RRKEPKLYRNGCTQRIHAFER++ +GN+S+ G ++  ++N
Sbjct: 181 D--HTNNCYIHNPDFASIVIRRKEPKLYRNGCTQRIHAFERSLFDGNMSVSGNLD-NVQN 237

Query: 240 GSCTQEDEELCKNLDRGANQTCRI---EDNPNESRLKQENSNSISVHAKSFCKKRKRAAR 296
            +     EE  K +    N    I   ++ P+E ++ +  ++ + V  +   +K  +   
Sbjct: 238 ENLVSVHEE-GKTMTVSTNAKADIISEKEKPDELKVVKAVADLVKVPVQRKKRKFGKRKA 296

Query: 297 YKKSRIRNFPDQVAQTTQKSDIS---STTLLNAVDNYVKHKEESKIFGNNIQMTPASLSA 353
             KS + +  +QV +T ++S +S    +TL+  +DN    +  S +   N          
Sbjct: 297 IIKSILHS--NQVKETNKESHLSCAKDSTLV--LDNDDPSRVSSSMACENEAQKDLMSPF 352

Query: 354 LNSPSDTTEMILQSG-------CEEVPKSDTVQTTTNNDDLLIDRLKLTRQESGPAELTE 406
            + P+DTT    +SG        E   K+ +    T +D   +D+  LTRQES  AE  E
Sbjct: 353 ADVPTDTTATNEKSGPHSNAENGEVFVKAGSAWNITKDDKESLDKSDLTRQESLSAESVE 412

Query: 407 MSACKTDLEAVNLSPLNSNVKSSNLTEGVSSQSLNDKFLKYTFQRKRKKESLSSPDGYSS 466
           + ACK D+EA N S    + K S+L E VS++S  DKF K+TF RKRKKE++S  D   S
Sbjct: 413 VPACK-DVEASNGSLDKMDSKVSDLDEKVSNRSTGDKF-KFTFCRKRKKEAISCDDVDCS 470

Query: 467 LEEGVMKRRMVVNPNGSVESENPSLITESS 496
            +    K++     +  VE +    +TESS
Sbjct: 471 QDNTSSKKKCGEKQDDHVEPQKSCTMTESS 500

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469677|ref|XP_004152545.1| PREDICTED: uncharacterized protein LOC101220716 [Cucumis sativus]

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 220/523 (42%), Positives = 298/523 (56%), Gaps = 65/523 (12%)

Query: 1   MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
           M DSEKL ALKKAYADIILNTAKEAAARIMVSER  IR QQEL   K++A R+LLRLKQM
Sbjct: 1   MEDSEKLTALKKAYADIILNTAKEAAARIMVSERNAIRCQQELSTTKDEAFRILLRLKQM 60

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDE 120
           LD+KV+EA++VSL Q++KI+ELEAQL EAEDIV++LR  L+E QDELE       +  D+
Sbjct: 61  LDSKVSEAEIVSLNQKKKIEELEAQLEEAEDIVRELRVQLQEVQDELEHVRNKNVEPQDK 120

Query: 121 QNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDS---VMASDVGNSTLNGTYENKMCY 177
           QN   ++ +                    P+  P+S   +   D+  STLNGT  +    
Sbjct: 121 QNLANNIVS--------------------PEAFPNSHEKIAPYDIS-STLNGTCLDSWPE 159

Query: 178 SENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQI 237
           S+N S  D     +  FAS+VMR KEP+LYRNGCTQR+ AFER   +G + + GQ E  +
Sbjct: 160 SKNDSQMDKGQV-HRDFASMVMRSKEPELYRNGCTQRVRAFERKSFDGKVCVTGQAE-DV 217

Query: 238 KNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENSNSISVHA------------K 285
           KN  C  ++EE    L R  N T ++++   E    ++NSN I                K
Sbjct: 218 KNKVCNMDEEE--GKLMRKTN-TTKVDNISGE----RKNSNEIKALPKLLSRDTQVPILK 270

Query: 286 SFCKKRKRAARYKKSRIRNFPDQVAQTTQKSDISSTTLLNAVD-----NYVKHKEESKIF 340
           S  +KRKRA RY K ++    D      +  D+  +  L +VD     N++  KE     
Sbjct: 271 SLRRKRKRATRYNKKKVLTVLDDTPNQCKSPDLHCSESL-SVDNDDAGNFLSKKEIDSQN 329

Query: 341 GNNIQMTPASLSALNSPSDTTEMILQSGCEEVPKSD-------TVQTTTNNDDLLIDRLK 393
           G  +  TP  LS +N      E+   SGC +  + D        ++  T++D  ++ +  
Sbjct: 330 GLILLSTPL-LSEIN------EIPTPSGCPDASEGDGAVINDCPLRNMTDHDTAVVGKSD 382

Query: 394 LTRQESGPAELTEMSACKTDLEAVNLSPLNSNVKSSNLTEGVSSQSLNDKFLKYTFQRKR 453
              QES   E  E S  K DL+ V  S +  ++K+S++ + + SQ  N+K LKYTFQRKR
Sbjct: 383 FGSQESLCGENLEASTDKVDLDPVKESSIQLDMKNSDVIDEIPSQQSNNKVLKYTFQRKR 442

Query: 454 KKESLSSPDGYSSLEEGVMKRRMVVNPNGSVESENPSLITESS 496
           KKESLSSPDG SS++E + K+RM    + S ES+  SL+TESS
Sbjct: 443 KKESLSSPDGKSSVDESISKKRMKDKQSVSSESDKFSLMTESS 485

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487869|ref|XP_004157841.1| PREDICTED: uncharacterized protein LOC101224767 [Cucumis sativus]

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 214/518 (41%), Positives = 290/518 (55%), Gaps = 75/518 (14%)

Query: 1   MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
           M DSEKL ALKKAYADIILNTAKEAAARIMVSER  IR QQEL   K++A R+LLRLKQM
Sbjct: 1   MEDSEKLTALKKAYADIILNTAKEAAARIMVSERNAIRCQQELSTTKDEAFRILLRLKQM 60

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDE 120
           LD+KV+EA++VSL Q++KI+ELEAQL EAEDIV++LR  L+E QDELE       +  D+
Sbjct: 61  LDSKVSEAEIVSLNQKKKIEELEAQLEEAEDIVRELRVQLQEVQDELEHVRNKNVEPQDK 120

Query: 121 QNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDS---VMASDVGNSTLNGTYENKMCY 177
           QN   ++ +                    P+  P+S   +   D+  STLNGT  +    
Sbjct: 121 QNLANNIVS--------------------PEAFPNSHEKIAPYDIS-STLNGTCLDSWPE 159

Query: 178 SENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQQI 237
           S+N S  D     +  FAS+VMR KEP+LYRNGCTQR+ AFER   +G + + GQ E  +
Sbjct: 160 SKNDSQMDKGQV-HRDFASMVMRSKEPELYRNGCTQRVRAFERKSFDGKVCVTGQAE-DV 217

Query: 238 KNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENSNSISVHA------------K 285
           KN  C  ++EE    L R  N T ++++   E    ++NSN I                K
Sbjct: 218 KNKVCNMDEEE--GKLMRKTN-TTKVDNISGE----RKNSNEIKALPKLLSRDTQVPILK 270

Query: 286 SFCKKRKRAARYKKSRIRNFPDQVAQTTQKSDISSTTLLNAVDNYVKHKEESKIFGNNIQ 345
           S  +KRKRA RY K ++    D      +  D+  +  L +VDN           GN + 
Sbjct: 271 SLRRKRKRATRYNKKKVLTVLDDTPNQCKSPDLHCSESL-SVDN--------DDAGNFLS 321

Query: 346 MTPASLSALNSPSDTTEMILQSGCEEVPKSD-------TVQTTTNNDDLLIDRLKLTRQE 398
                           E+  Q+GC +  + D        ++  T++D  ++ +     QE
Sbjct: 322 --------------KKEIDSQNGCPDASEGDGAVINDCPLRNMTDHDTAVVGKSDFGSQE 367

Query: 399 SGPAELTEMSACKTDLEAVNLSPLNSNVKSSNLTEGVSSQSLNDKFLKYTFQRKRKKESL 458
           S   E  E S  K DL+ V  S +  ++K+S++ + + SQ  N+K LKYTFQRKRKKESL
Sbjct: 368 SLCGENLEASTDKVDLDPVKESSIQLDMKNSDVIDEIPSQQSNNKVLKYTFQRKRKKESL 427

Query: 459 SSPDGYSSLEEGVMKRRMVVNPNGSVESENPSLITESS 496
           SSPDG SS++E + K+RM    + S ES+  SL+TESS
Sbjct: 428 SSPDGKSSVDESISKKRMKDKQSVSSESDKFSLMTESS 465

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297733859|emb|CBI15106.3| unnamed protein product [Vitis vinifera]

 Score =  247 bits (631), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 135/234 (57%), Positives = 172/234 (73%)

Query: 1   MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
           M DSEKL ALKKAYA+ ILNTAKEAAARIMVSERK +  QQ+LF AKE+ALRML+RLKQM
Sbjct: 1   MEDSEKLTALKKAYAETILNTAKEAAARIMVSERKALSSQQDLFMAKEEALRMLVRLKQM 60

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDE 120
           +D+K+ EA+++SL QQ+KI+ELEAQL EAEDIV++LR +LRE Q+ LE+ T  + Q LDE
Sbjct: 61  MDSKIGEAKMISLSQQKKIEELEAQLEEAEDIVRELREELREVQNALEKMTKKQLQALDE 120

Query: 121 QNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSEN 180
           ++  G+  T +    E +L+ S + +      +P+ V  SD+ NST N   E   CY  N
Sbjct: 121 KSFKGNAGTEVEAPQEYKLSASASLILPRTGSRPEPVTTSDLKNSTFNKRNEGNKCYGAN 180

Query: 181 GSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVE 234
            S+ +NC+  N  FASIV R KEP+LYRNGCTQRI AFE ++LEG LSL GQV+
Sbjct: 181 DSYMENCFVANRDFASIVTRSKEPELYRNGCTQRIRAFESSLLEGKLSLSGQVD 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055519|ref|XP_002298519.1| predicted protein [Populus trichocarpa] gi|222845777|gb|EEE83324.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (502), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 141/352 (40%), Positives = 194/352 (55%), Gaps = 44/352 (12%)

Query: 1   MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
           M++SEKL+ALKKAYADIILNTAKEAA R+M SERK +RY  +L  +K++ALR+LLRLKQM
Sbjct: 1   MAESEKLVALKKAYADIILNTAKEAANRVMESERKALRYHHDLCNSKDEALRLLLRLKQM 60

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDE 120
           +DAK  EA++ S  QQ KIDELEAQL EAE ++ DLR +LR  +DELE+   ++      
Sbjct: 61  IDAKTIEAEITSSRQQSKIDELEAQLQEAEGVIIDLRDELRWLRDELEKVRNSQG----- 115

Query: 121 QNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYS-- 178
           Q S G +      S +N   TSE  +  + D+ P +V  SDV ++ L+    N  C +  
Sbjct: 116 QPSNGKLVKENESSNQNL--TSEPIILSMTDLSPQTVATSDVKSAQLDQRNFNDKCRNTT 173

Query: 179 -----------ENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNL 227
                      EN S  D      +  A+I+M  KEP+LYRNGCTQRI A E N+    L
Sbjct: 174 EDIEQLTVLNFENYSSHD------ADLAAIMMTNKEPELYRNGCTQRIRALEGNLFASRL 227

Query: 228 SLPGQVEQQ---IKNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENSNSISVHA 284
           + PG V +Q   IKN   ++       N+D G    C +   P+      E +N +    
Sbjct: 228 TPPGVVAEQESLIKNEVISK-----ASNMDEGK---CSV---PSPKTKALEKTNFLGEEG 276

Query: 285 K---SFCKKRKRAARYKKSRI-RNFPDQVAQTTQKSDISSTTLLNAVDNYVK 332
           +     C  R+R +R  K+++ R     V +  Q   I S    N+V+  VK
Sbjct: 277 RKRVKVCPSRRRKSRSAKAKVKRKSCLNVKKPYQPPSIVSRCKTNSVNGTVK 328

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140893|ref|XP_002323812.1| predicted protein [Populus trichocarpa] gi|222866814|gb|EEF03945.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (496), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 143/343 (41%), Positives = 194/343 (56%), Gaps = 29/343 (8%)

Query: 1   MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
           M++SEKL+ALKKAYADIILNTAKEAA+R+M SERK +RY  +L ++K++ALR+LLRLKQM
Sbjct: 1   MAESEKLVALKKAYADIILNTAKEAASRVMESERKGLRYHHDLCSSKDEALRLLLRLKQM 60

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDE 120
           +DAK  EA++ S  QQ KIDEL+AQL EAE ++ DLRA+LR  +DELE+   ++      
Sbjct: 61  IDAKAIEAEITSASQQSKIDELDAQLQEAEGVIIDLRAELRWVRDELEKVRNSQV----- 115

Query: 121 QNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSEN 180
           Q S G+       S ++   TSE  +  L ++ P +V  S+V  + L+    NK C +E+
Sbjct: 116 QPSNGEAVKENESSHQHL--TSEPIVLSLSNLPPQTVATSNVKGTLLDQRNFNKCCNTED 173

Query: 181 G----SHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQ--VE 234
                S  +N    N+  ASI M  KEP+LYRNGCTQRI A E N     L  P    VE
Sbjct: 174 QQLSVSPLENYSARNADLASITMANKEPELYRNGCTQRIRASEGNAFASKLP-PSDVGVE 232

Query: 235 QQ--IKNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENSNSISV--HAKSFCKK 290
           QQ  IKN        E+      G    C  E +P    + + N +   V  H K  C  
Sbjct: 233 QQSLIKN--------EVIVKASNGDEGKC-TETSPKTKNVGKMNFSGEEVRNHVK-VCSS 282

Query: 291 RKRAARYKKSRI-RNFPDQVAQTTQKSDISSTTLLNAVDNYVK 332
           R++  R+ K++  R     V +  Q   I S    N+V+  VK
Sbjct: 283 RQKRGRFAKAKAKRKSCPIVRKPYQPPSIVSRRKTNSVNGTVK 325

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573435|ref|XP_003554866.1| PREDICTED: uncharacterized protein LOC100809847 [Glycine max]

 Score =  186 bits (473), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/232 (48%), Positives = 148/232 (63%), Gaps = 17/232 (7%)

Query: 4   SEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDA 63
           S +++ALKKAYAD+ILNT KEAA R+MV+ER+ + +QQEL ++KE+AL ML+RLKQM+DA
Sbjct: 33  SHEMVALKKAYADVILNTVKEAAGRVMVAERRALMFQQELASSKEEALHMLMRLKQMMDA 92

Query: 64  KVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDEQNS 123
           K  EA+  SL QQRKIDELEAQL EAEDIV DLRA+L+    ELE A  N+ Q L+ QN 
Sbjct: 93  KTAEAEKASLEQQRKIDELEAQLNEAEDIVTDLRAELKLVYLELETARNNQVQPLNGQNE 152

Query: 124 TGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLN-GTYENKMCYSENGS 182
              V    +   E  +++    + C        V + DV N +L     +NK C S+  +
Sbjct: 153 KQVVTFQESAKPEISISSPHKELEC--------VTSCDVANKSLTMNVLDNKCCNSKQQT 204

Query: 183 HK-------DNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNL 227
            +       D+C   NS FASI+ R KEP+L RNG TQR+ A E N+L+  L
Sbjct: 205 EQLCIYNLEDSCGH-NSDFASIITRSKEPELRRNGFTQRVRALEGNLLDEKL 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839361|ref|XP_002887562.1| hypothetical protein ARALYDRAFT_476622 [Arabidopsis lyrata subsp. lyrata] gi|297333403|gb|EFH63821.1| hypothetical protein ARALYDRAFT_476622 [Arabidopsis lyrata subsp. lyrata]

 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/247 (43%), Positives = 151/247 (61%), Gaps = 15/247 (6%)

Query: 1   MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
           M+D E L ALK+AYAD ILNT KEAAAR+MVSE+K  RYQQEL   +++AL+ LLRLKQM
Sbjct: 1   MADQETLAALKRAYADTILNTTKEAAARVMVSEKKARRYQQELVTVRDEALQTLLRLKQM 60

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLL-- 118
           LD+KV E ++ SL QQ+K++ELEAQLGEAEDIV +LR +LR   +EL++ T  +  L   
Sbjct: 61  LDSKVKETEMQSLKQQQKVEELEAQLGEAEDIVGELRMELRVLHNELKKLTNGQTHLKSD 120

Query: 119 DEQNSTG---DVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKM 175
            E++  G   D A  + P +     ++EA   C+P  Q  SV+A+ +   +L        
Sbjct: 121 HEEDPCGNNRDAAVSVVPEVSCSHESTEAVDFCIPVEQSGSVVANGIKVPSLTRINSINR 180

Query: 176 CYSENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVEQ 235
           C     S+KDN   C+ +  SI+ +R+E +    G  Q IHA + ++  G LS   +V  
Sbjct: 181 C-----SYKDNKDQCHHTLPSILTKRREAE----GLAQMIHAVDSSMANGVLSSSVEV-G 230

Query: 236 QIKNGSC 242
            + +G C
Sbjct: 231 DVNDGVC 237

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:2037261	400	AT1G74860 "AT1G74860" [Arabido	0.481	0.597	0.428	4.8e-54
TAIR|locus:2011231	319	AT1G19010 "AT1G19010" [Arabido	0.528	0.821	0.363	6e-32

TAIR|locus:2037261 AT1G74860 "AT1G74860" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 4.8e-54, Sum P(2) = 4.8e-54
 Identities = 110/257 (42%), Positives = 153/257 (59%)

Query:     1 MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
             M+D E L ALK+AYAD ILNT KEAAAR+MVSE+K  RYQQEL   + +AL  L+RLKQM
Sbjct:     1 MADPETLAALKRAYADTILNTTKEAAARVMVSEKKARRYQQELVTVRNEALHTLVRLKQM 60

Query:    61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLD- 119
             LD+KV E ++ SL QQ+K++ELEAQLGEAEDIV +LR +LR   DEL++ T  +K L   
Sbjct:    61 LDSKVKETEMQSLKQQQKVEELEAQLGEAEDIVGELRLELRVLHDELKKLTDGQKHLKKN 120

Query:   120 -EQN---STGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYE-NK 174
              E+N   +  D A  + P +      +EA   C+P  Q  SV+A+ +   +L      N+
Sbjct:   121 HEENLCWNNRDAAVSVMPEVSCSHENTEAVGFCIPVEQNGSVVANGIKVPSLTRINSINR 180

Query:   175 MCYSENGSHKDNCYFCNSSFASIVMRRKEPKLYRNGCTQRIHAFERNILEGNLSLPGQVE 234
               Y +N   KD C++   +  SI+ +R+E +    G  Q IH  + ++  G LS   +V 
Sbjct:   181 CSYKDN---KDQCHY---TLPSILTKRRETE----GLAQMIHTVDSSMANGVLSSSVEVG 230

Query:   235 QQIKNGSCTQEDEELCK 251
               + +G C  E    CK
Sbjct:   231 D-VNDGVCLHEVSS-CK 245

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2011231 AT1G19010 "AT1G19010" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 104/286 (36%), Positives = 155/286 (54%)

Query:     1 MSDSEKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQM 60
             M+D EKL ALKKAYA+ ILNTAKEAAAR+M++ERK   YQQEL + +++ALR  LRLKQ+
Sbjct:     1 MTDPEKLTALKKAYAETILNTAKEAAARVMITERKARGYQQELASVRDEALRACLRLKQI 60

Query:    61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQLLDE 120
              D+KV EA+++SL +Q+KI+ELEAQLGEAEDIV +LR +LRE++  LE+     +  L +
Sbjct:    61 YDSKVKEAEMISLQKQQKIEELEAQLGEAEDIVGELRTELRESRYLLEKLANGCQTNLSK 120

Query:   121 QNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPDSVMASDVGNSTLNGTYENKMCYSEN 180
             +    + A     SLE R ++S      +      SV+   + +  L+    N+  Y EN
Sbjct:   121 EEKAPNEAV----SLEVREDSSNHERSVVA-----SVIKPHMSDRDLS---INRCSYKEN 168

Query:   181 GSHKDNCYFCNSSFASIVMRRK--EPKLYRNGCTQ---RIHAFERNILEGNLSL---P-G 231
                KD C +   S  S     +  E       C        A +    E ++ L   P  
Sbjct:   169 ---KDPCLYTLPSILSRCREAEVVERNTINGDCADVESLTEARKEEAKENDIELSTTPLS 225

Query:   232 QVEQQIKNGSCTQEDEELCKNLDRGANQTCRIEDNPNESRLKQENS 277
               E+Q    S  ++  +   N   G   + + +D+ +ESR ++  +
Sbjct:   226 PSEKQCIKFSYKRKHNKDGSNSPEGGGSSSQDDDDDDESRSRRHKT 271


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.309   0.124   0.335    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      496       481   0.00080  119 3  11 23  0.49    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  241 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  57.00u 0.09s 57.09t   Elapsed:  00:00:06
  Total cpu time:  57.00u 0.09s 57.09t   Elapsed:  00:00:06
  Start:  Tue May 21 07:06:08 2013   End:  Tue May 21 07:06:14 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00011932 hypothetical protein (616 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
PRK10698	222	phage shock protein PspA; Provisional	95.06
TIGR02977	219	phageshock_pspA phage shock protein A. Members of	94.04
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	92.6
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	91.96
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.35
PRK00846	77	hypothetical protein; Provisional	90.52
PRK09039	343	hypothetical protein; Validated	87.07
PRK02793	72	phi X174 lysis protein; Provisional	86.94
PRK02119	73	hypothetical protein; Provisional	86.88
PRK11637	428	AmiB activator; Provisional	85.42
PRK00295	68	hypothetical protein; Provisional	84.76
PHA02562	562	46 endonuclease subunit; Provisional	84.36
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	83.83
PRK04325	74	hypothetical protein; Provisional	83.18
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	83.02
COG1842	225	PspA Phage shock protein A (IM30), suppresses sigm	82.84
PRK10884	206	SH3 domain-containing protein; Provisional	82.04
PRK04406	75	hypothetical protein; Provisional	81.78

>PRK10698 phage shock protein PspA; Provisional

Probab=95.06  E-value=1.1  Score=43.53  Aligned_cols=111  Identities=14%  Similarity=0.224  Sum_probs=65.7

Q ss_pred             CCchHHHH-----HHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHH-HHHHHHHHHHhhhhhHHHHHHHHHHH
Q 010974            1 MSDSEKLM-----ALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKE-DALRMLLRLKQMLDAKVNEAQVVSLC   74 (496)
Q Consensus         1 MadSekl~-----ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Ke-eal~~LlRLK~~~daki~EaE~~sl~   74 (496)
                      |+||+|+.     -|..++.+     ++.+.|++|+.+++..+-..++...-+ =-=++.+-|.+-=+.--.+|=..-..
T Consensus        22 aEDP~k~l~q~i~em~~~l~~-----~r~alA~~~A~~k~~er~~~~~~~~~~~~e~kA~~Al~~G~EdLAr~AL~~K~~   96 (222)
T PRK10698         22 AEDPQKLVRLMIQEMEDTLVE-----VRSTSARALAEKKQLTRRIEQAEAQQVEWQEKAELALRKEKEDLARAALIEKQK   96 (222)
T ss_pred             hcCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            57888752     23333333     488999999887765433222211110 01122223333222222232223333


Q ss_pred             HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974           75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ  116 (496)
Q Consensus        75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q  116 (496)
                      ...+|..|++|+...+..+..|+..|++++..|++++..+..
T Consensus        97 ~~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~  138 (222)
T PRK10698         97 LTDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQA  138 (222)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788889999999999999999999999999888887754

>TIGR02977 phageshock_pspA phage shock protein A

Probab=94.04  E-value=3.6  Score=39.56  Aligned_cols=110  Identities=20%  Similarity=0.286  Sum_probs=70.9

Q ss_pred             CCchHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhhHHHH----HHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 010974            1 MSDSEKLMALKKAYADI--ILNTAKEAAARIMVSERKTIR----YQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLC   74 (496)
Q Consensus         1 MadSekl~ALkkAyadi--ilntaKEaAaRvm~aErka~~----~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~   74 (496)
                      ++||+++  |...+-||  -|..++.+-|++|+.+++..+    ++....--.+.   +.+-|++-=|.-..+|=..-..
T Consensus        22 ~EDP~~~--l~q~irem~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~~~~~~~~---A~~Al~~G~EdLAr~Al~~k~~   96 (219)
T TIGR02977        22 AEDPEKM--IRLIIQEMEDTLVEVRTTSARTIADKKELERRVSRLEAQVADWQEK---AELALSKGREDLARAALIEKQK   96 (219)
T ss_pred             ccCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHH
Confidence            4688864  44444333  356788899999988654332    22222222222   2333444444444444445555


Q ss_pred             HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974           75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK  115 (496)
Q Consensus        75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~  115 (496)
                      .+..+..|+.|+..++..|..|+..|++.+..|+.++....
T Consensus        97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~  137 (219)
T TIGR02977        97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQK  137 (219)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66778888999999999999999999999999988887764

Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=92.60  E-value=7.5  Score=36.76  Aligned_cols=110  Identities=29%  Similarity=0.357  Sum_probs=57.0

Q ss_pred             CCchHHHHHHHHHHHHH--HHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHHHH----HHHHHhhhhhHHHHHHHHHHH
Q 010974            1 MSDSEKLMALKKAYADI--ILNTAKEAAARIMVSERKTIRYQQELFAAKEDALRM----LLRLKQMLDAKVNEAQVVSLC   74 (496)
Q Consensus         1 MadSekl~ALkkAyadi--ilntaKEaAaRvm~aErka~~~~qel~~~Keeal~~----LlRLK~~~daki~EaE~~sl~   74 (496)
                      |+||++  -|..++-|+  -+.-++.+.++||+..++..   +++..+..++-..    .+-|++-=|.--.+|=..-..
T Consensus        21 ~EDP~~--~l~q~ird~e~~l~~a~~~~a~~~a~~~~le---~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~   95 (221)
T PF04012_consen   21 AEDPEK--MLEQAIRDMEEQLRKARQALARVMANQKRLE---RKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKAD   95 (221)
T ss_pred             hcCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            467874  455555444  34556778888877655432   2222222222211    111222222223333333334


Q ss_pred             HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974           75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK  115 (496)
Q Consensus        75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~  115 (496)
                      ....+..|+.++..+...|..|+..|+.....|+.++....
T Consensus        96 ~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~  136 (221)
T PF04012_consen   96 LEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKRE  136 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666666666666666666666666666666554

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.96  E-value=0.75  Score=38.96  Aligned_cols=55  Identities=25%  Similarity=0.381  Sum_probs=49.9

Q ss_pred             hhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974           59 QMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN  113 (496)
Q Consensus        59 ~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~  113 (496)
                      ..++++|+|.|++..-|-+-|+||-.+|-|-+-+|..+|+-||.+-..|..++..
T Consensus         4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~   58 (72)
T COG2900           4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPS   58 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            4678999999999999999999999999999999999999999998888776554

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.35  E-value=0.77  Score=37.38  Aligned_cols=52  Identities=23%  Similarity=0.400  Sum_probs=41.9

Q ss_pred             hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974           60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT  111 (496)
Q Consensus        60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r  111 (496)
                      ||+.+|.+.|+...-+..-|++|-..+-.-+..|..|+..|+.+...|..+.
T Consensus         1 ~le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    1 MLEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            6889999999999999999999999888888888888888888888887765

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK00846 hypothetical protein; Provisional

Probab=90.52  E-value=1.3  Score=37.73  Aligned_cols=56  Identities=20%  Similarity=0.214  Sum_probs=51.3

Q ss_pred             HhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974           58 KQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN  113 (496)
Q Consensus        58 K~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~  113 (496)
                      .+.|+++|.+-|+...-|..-|++|-..+...+..|..|+..|+++.+.|+.+...
T Consensus         8 ~~~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s   63 (77)
T PRK00846          8 DQALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVRST   63 (77)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            47789999999999999999999999999999999999999999999999887744

>PRK09039 hypothetical protein; Validated

Probab=87.07  E-value=7.8  Score=40.06  Aligned_cols=80  Identities=25%  Similarity=0.203  Sum_probs=45.9

Q ss_pred             HHhhHHHHHHHHHHHhHH---HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHH----
Q 010974           31 VSERKTIRYQQELFAAKE---DALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREA----  103 (496)
Q Consensus        31 ~aErka~~~~qel~~~Ke---eal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~----  103 (496)
                      ..|.++..++.+|...|.   |+.+.+.+|++-+++=    +-+.-.=+.-|+++|++..+++..|.+|+.+|+.+    
T Consensus       113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aL----r~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~  188 (343)
T PRK09039        113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAAL----RRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQR  188 (343)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            446778888888888775   5677788887755441    11122223345555555555555555555555555    


Q ss_pred             HHHHHHHHHhh
Q 010974          104 QDELERATYNE  114 (496)
Q Consensus       104 ~~eLEk~r~~q  114 (496)
                      -.+|+..++.-
T Consensus       189 ~~~l~~~~~~~  199 (343)
T PRK09039        189 VQELNRYRSEF  199 (343)
T ss_pred             HHHHHHhHHHH
Confidence            23455555544

>PRK02793 phi X174 lysis protein; Provisional

Probab=86.94  E-value=2.9  Score=34.63  Aligned_cols=53  Identities=25%  Similarity=0.304  Sum_probs=45.2

Q ss_pred             hhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 010974           61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYN  113 (496)
Q Consensus        61 ~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~  113 (496)
                      |+++|.+-|+...-|..-|++|-..+-+-+..|..|+.+|+++...|..++.+
T Consensus         6 ~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~~~   58 (72)
T PRK02793          6 LEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKASQPS   58 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            77899999999999999999999988888888888888888888888775543

>PRK02119 hypothetical protein; Provisional

Probab=86.88  E-value=3  Score=34.66  Aligned_cols=52  Identities=19%  Similarity=0.331  Sum_probs=44.7

Q ss_pred             hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974           60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT  111 (496)
Q Consensus        60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r  111 (496)
                      .|+.+|.+-|+...-|..-|++|-..+-+-+..|..|+.+|+++...|..+.
T Consensus         6 ~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~~   57 (73)
T PRK02119          6 NLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKDMQ   57 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4788999999999999999999999888888888888888888888776654

>PRK11637 AmiB activator; Provisional

Probab=85.42  E-value=39  Score=35.40  Aligned_cols=38  Identities=24%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974           74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT  111 (496)
Q Consensus        74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r  111 (496)
                      .++..++.|+.++.+.+..+..|+.+.++....|+++.
T Consensus       216 e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~l~  253 (428)
T PRK11637        216 ERKKTLTGLESSLQKDQQQLSELRANESRLRDSIARAE  253 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344555555555555555556555555555555443

>PRK00295 hypothetical protein; Provisional

Probab=84.76  E-value=5.1  Score=32.88  Aligned_cols=51  Identities=20%  Similarity=0.286  Sum_probs=38.9

Q ss_pred             hhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 010974           61 LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERAT  111 (496)
Q Consensus        61 ~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r  111 (496)
                      |+++|.+-|+...-|..-|++|-..+-.-+..|..|+..|+++...|..+.
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            567788888888888888888888777777777777777777777666543

>PHA02562 46 endonuclease subunit; Provisional

Probab=84.36  E-value=40  Score=35.63  Aligned_cols=97  Identities=8%  Similarity=0.063  Sum_probs=52.3

Q ss_pred             chHHHHHHHHHH-HHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHHH---HHHHHHHhhhhhHHHHHHHHHHHHHhh
Q 010974            3 DSEKLMALKKAY-ADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDAL---RMLLRLKQMLDAKVNEAQVVSLCQQRK   78 (496)
Q Consensus         3 dSekl~ALkkAy-adiilntaKEaAaRvm~aErka~~~~qel~~~Keeal---~~LlRLK~~~daki~EaE~~sl~~qrk   78 (496)
                      ++++...|.+.. -++.-.+.+.+-.++-..+.+...++.++....++.=   .++.+++...+..+.+.+..--.-.++
T Consensus       149 ~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e~~~l~~~  228 (562)
T PHA02562        149 APARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNKYDELVEE  228 (562)
T ss_pred             hHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444443 2344455666666666777777777777666555433   455566655555544444444444445


Q ss_pred             hHHHHHHhhhhHHHHHHHHHH
Q 010974           79 IDELEAQLGEAEDIVKDLRAD   99 (496)
Q Consensus        79 i~ELeaqL~eaed~v~~Lr~E   99 (496)
                      ...|++|+...++-+.+|+.+
T Consensus       229 ~~~l~~~l~~l~~~i~~l~~~  249 (562)
T PHA02562        229 AKTIKAEIEELTDELLNLVMD  249 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHhcc
Confidence            555555555555555555443

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=83.83  E-value=2.7  Score=34.03  Aligned_cols=39  Identities=28%  Similarity=0.452  Sum_probs=35.5

Q ss_pred             hhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 010974           78 KIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEKQ  116 (496)
Q Consensus        78 ki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~q  116 (496)
                      ||+|||..|.-.+-.|..+|.|+...+..+|++-.+-..
T Consensus         1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~   39 (55)
T PF05377_consen    1 RIDELENELPRIESSINTVKKENEEISESVEKIEENVKD   39 (55)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999999999999999998877543

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PRK04325 hypothetical protein; Provisional

Probab=83.18  E-value=6.3  Score=32.83  Aligned_cols=51  Identities=22%  Similarity=0.334  Sum_probs=39.5

Q ss_pred             hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974           60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA  110 (496)
Q Consensus        60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~  110 (496)
                      .|..+|.+-|+...-|..-|++|-..+-+-+..|..|+..|+.+...|..+
T Consensus         6 ~~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~~   56 (74)
T PRK04325          6 EMEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRDA   56 (74)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            466788888888888888888888877777777777777777777666554

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=83.02  E-value=42  Score=32.68  Aligned_cols=45  Identities=31%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhHHHH
Q 010974            5 EKLMALKKAYADIILNTAKEAAARIMVSERKTIRYQQELFAAKEDA   50 (496)
Q Consensus         5 ekl~ALkkAyadiilntaKEaAaRvm~aErka~~~~qel~~~Keea   50 (496)
                      +++..|.....++ -..+.+|-.|.--++||-..++++|..+.+-|
T Consensus        92 eri~~lE~~l~ea-~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~  136 (237)
T PF00261_consen   92 ERIEELEQQLKEA-KRRAEEAERKYEEVERKLKVLEQELERAEERA  136 (237)
T ss_dssp             HHHHHCHHHHHHH-HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443333332 23455555566666666666666666554433

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]

Probab=82.84  E-value=53  Score=32.65  Aligned_cols=110  Identities=25%  Similarity=0.261  Sum_probs=62.4

Q ss_pred             CCchHHHHHHHHHHH--HHHHhhHHHHHHHHHHH----hhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 010974            1 MSDSEKLMALKKAYA--DIILNTAKEAAARIMVS----ERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLC   74 (496)
Q Consensus         1 MadSekl~ALkkAya--diilntaKEaAaRvm~a----Erka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~   74 (496)
                      |+||+++.  ..++-  +-=|.-++.+.|.||+.    ||+....+....--...|..+|-.=..-+-.+..+ +++++.
T Consensus        22 ~EDp~~~l--~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~al~-~~~~le   98 (225)
T COG1842          22 AEDPEKML--EQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLAREALE-EKQSLE   98 (225)
T ss_pred             hcCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHH
Confidence            57888652  22222  22344566777777764    55555555555555555554443322222112222 234443


Q ss_pred             HHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 010974           75 QQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNEK  115 (496)
Q Consensus        75 ~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~~q~  115 (496)
                        ..+..+++++..+.+.+..|+..+.++...+.+++....
T Consensus        99 --~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~e~~~~~~  137 (225)
T COG1842          99 --DLAKALEAELQQAEEQVEKLKKQLAALEQKIAELRAKKE  137 (225)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              345677788888888888888888887777777766554

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.04  E-value=22  Score=34.82  Aligned_cols=80  Identities=11%  Similarity=0.085  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 010974           23 KEAAARIMVSERKTIRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLRE  102 (496)
Q Consensus        23 KEaAaRvm~aErka~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~  102 (496)
                      ..+..|+=..|+.-+.++++|..+.++           .+....|-.-..-.-...|.+|+++...+..-+..++.|++.
T Consensus        89 p~~~~rlp~le~el~~l~~~l~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~  157 (206)
T PRK10884         89 PSLRTRVPDLENQVKTLTDKLNNIDNT-----------WNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA  157 (206)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566666666666666666665544           222222211111112223555666655555555555555555


Q ss_pred             HHHHHHHHHHh
Q 010974          103 AQDELERATYN  113 (496)
Q Consensus       103 ~~~eLEk~r~~  113 (496)
                      +..+++..+.+
T Consensus       158 l~~~~~~~~~~  168 (206)
T PRK10884        158 ANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHH
Confidence            55555555443

>PRK04406 hypothetical protein; Provisional

Probab=81.78  E-value=7.2  Score=32.72  Aligned_cols=51  Identities=14%  Similarity=0.354  Sum_probs=37.4

Q ss_pred             hhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 010974           60 MLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERA  110 (496)
Q Consensus        60 ~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~  110 (496)
                      .|+.+|.+-|+...-|..-|++|-..+-+-+--|..|+.+|+++.+.|..+
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~   58 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKNM   58 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            567788888888777888888888877777777777777777776666543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-17

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 85.3 bits (210), Expect = 1e-17
 Identities = 82/499 (16%), Positives = 152/499 (30%), Gaps = 137/499 (27%)

Query: 61  LDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATYNE--KQLL 118
           +D +  E Q      +  +   E      +  V +   D ++ QD  +     E    ++
Sbjct: 7   MDFETGEHQ---YQYKDILSVFE------DAFVDNF--DCKDVQDMPKSILSKEEIDHII 55

Query: 119 DEQNSTGDVATVMTPSLENRLNTSEAAMPCLPDVQPD-SVMASDVGNSTLNGTYENKMCY 177
             +++      +    L  +    +  +  +  ++ +   + S +       +   +M Y
Sbjct: 56  MSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRM-Y 112

Query: 178 SENGSHKDNCYFCNSSFASIVMRRKEP------KLYR------------NGC-------- 211
            E    +D  Y  N  FA   + R +P       L               G         
Sbjct: 113 IE---QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169

Query: 212 ---TQRIH-AFERNI--LE-GNLSLPGQVEQQIKNGSCTQEDEELCKNLDRGANQTCRIE 264
              + ++    +  I  L   N + P  V + ++     Q D       D  +N   RI 
Sbjct: 170 VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 265 DNPNE-SRLKQENS--NSISV--------HAKSF---CKKRKRAARYKKSRIRNFPDQVA 310
               E  RL +     N + V           +F   CK                   + 
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK-------------------IL 269

Query: 311 QTTQKSDISSTTLLNAVDNYVKH-----------KEESK-IFGNNIQMTPASL--SALN- 355
            TT+      T  L+A      H            +E K +    +   P  L    L  
Sbjct: 270 LTTR--FKQVTDFLSA--ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 356 SPSDTTEMILQSGCEEVPKSDTVQTTTNNDDLLIDRLKLTRQES----GPAELTEMSACK 411
           +P         S   E    D + T  N   +  D+L    + S     PAE  +M    
Sbjct: 326 NP------RRLSIIAES-IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM---- 374

Query: 412 TDLEAVNLSPLNSNVKS-------SNLTEGVSSQSLNDKFLKYTFQRKRKKESLSS-PDG 463
              + +++ P ++++ +        ++ +      +N K  KY+   K+ KES  S P  
Sbjct: 375 --FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTISIPSI 431

Query: 464 YSSL-----EEGVMKRRMV 477
           Y  L      E  + R +V
Sbjct: 432 YLELKVKLENEYALHRSIV 450

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	93.77
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	81.72
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	81.7
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	81.32

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=93.77  E-value=1.2  Score=44.34  Aligned_cols=63  Identities=21%  Similarity=0.325  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHhHHHH---HHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHH
Q 010974           35 KTIRYQQELFAAKEDA---LRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQ  104 (496)
Q Consensus        35 ka~~~~qel~~~Keea---l~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~  104 (496)
                      +-.++|..+..++-+|   =+..|-|-..+|+++..++       +||+|||+|+.+.+..+.++++|++|.+
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          405 ELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQ-------KKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333333333444443   3677888888888776554       5999999987777777777777766643

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=81.72  E-value=25  Score=30.35  Aligned_cols=58  Identities=29%  Similarity=0.388  Sum_probs=30.4

Q ss_pred             HHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010974           41 QELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLREAQDELERATY  112 (496)
Q Consensus        41 qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLEk~r~  112 (496)
                      +++.+-.++-+..|..-|+-++.+|.+.+              +.|.+-++....|..+-+.+.+++..+.+
T Consensus        61 ~~~l~e~EE~~~~L~~~k~eLe~~l~el~--------------~rleeeee~~~~L~~~kkkle~e~~~Lk~  118 (129)
T 2fxo_A           61 QDNLADAEERCDQLIKNKIQLEAKVKEMN--------------KRLEDEEEMNAELTAKKRKLEDECSELKR  118 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455556666666666666665555554              44444444555555555544444444443

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=81.70  E-value=15  Score=32.64  Aligned_cols=82  Identities=18%  Similarity=0.273  Sum_probs=49.7

Q ss_pred             HHHHHHhhHH----HHHHHHHHHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhHHHHHHhhhhHHHHHHHHHHHHH
Q 010974           27 ARIMVSERKT----IRYQQELFAAKEDALRMLLRLKQMLDAKVNEAQVVSLCQQRKIDELEAQLGEAEDIVKDLRADLRE  102 (496)
Q Consensus        27 aRvm~aErka----~~~~qel~~~Keeal~~LlRLK~~~daki~EaE~~sl~~qrki~ELeaqL~eaed~v~~Lr~ELr~  102 (496)
                      .+++-.+|-|    .-+..||+-++++.-.+.-.|+.. +..+-..--.....|-++++++.++.+++.-+..|+.++.+
T Consensus        50 ~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~-~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~  128 (138)
T 3hnw_A           50 YRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENK-DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVK  128 (138)
T ss_dssp             HHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445544    446788888888865444333332 22222222233445667777777777777777777777777


Q ss_pred             HHHHHHH
Q 010974          103 AQDELER  109 (496)
Q Consensus       103 ~~~eLEk  109 (496)
                      +.++|+.
T Consensus       129 le~~~~~  135 (138)
T 3hnw_A          129 LETELND  135 (138)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777764

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}

Probab=81.32  E-value=1.4  Score=35.65  Aligned_cols=35  Identities=31%  Similarity=0.551  Sum_probs=27.9

Q ss_pred             HHHhhhHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 010974           74 CQQRKIDELEAQLGEAEDIVKDLRADLREAQDELE  108 (496)
Q Consensus        74 ~~qrki~ELeaqL~eaed~v~~Lr~ELr~~~~eLE  108 (496)
                      .+.-+|.|||+.|.++.+.|+.||.+|.+.++-|.
T Consensus        22 ~Kde~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~   56 (67)
T 1zxa_A           22 LKEERIKELEKRLSEKEEEIQELKRKLHKCQSVLP   56 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44568999999999999999999999999988876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00