Citrus Sinensis ID: 010994

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490------
Protein Sequence
MIPKLKLSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVCTMEK
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHcccccccccHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHcccHHHHHHHHHHHccccccEHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mipklklstntqihNAVFSRfyytnrinktTLYSIIsplgnpgtriepeldnwvkngnkVRVGELQRIIRDLRKRKRFSQALEVSDWmnrkgicvfapcdhavqLDLIGRVHGFLSAESYFsnlkddekTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLysktgqyekvpDVLTEMKaknifpdnfsyrICINsygarsdlEGMEIILREMesqphivldwstyaSAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWElsgnsydtripnAVIIGYCNNGLVQNAEAILEDLVEkgkattpnsWAVVAAGyfdagkterGFQCMKAALSVYVegkgwkpdpkVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSmkadgidedeeTKEILVCTMEK
Flexible Loop (DISEMBL)
mipklklstntqihnavFSRFYYTNRINKTTLYSIISPLGNPGTRIepeldnwvkngnkvrvgelQRIIRDLRKRKRFsqalevsdwmnrKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKnifpdnfsyRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERleqkdgigYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYvegkgwkpdPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMkadgidedeetkEILVCTMEK
Low Complexity Region (SEG)
MIPKLKLSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVCTMEK
Disordered region (IsUnstruct)
**********TQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDEL*************************
Disordered Region (DISOPRED)
*****K*STNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVCTMEK
Disordered Region (DISEMBL)
MIPKLKLSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVCTMEK
Disordered Region (DISPRO)
MIPKLKLSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVCTMEK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPKLKLSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLxxxxxxxxxxxxxxxxxxxxxGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVCTMEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	496	2.2.26 [Sep-21-2011]
Q84JR3	492	Pentatricopeptide repeat-	yes	no	0.959	0.967	0.589	1e-167
Q9SKU6	490	Pentatricopeptide repeat-	no	no	0.905	0.916	0.368	3e-77
Q8LPS6	524	Pentatricopeptide repeat-	no	no	0.858	0.812	0.355	8e-73
O22714	491	Pentatricopeptide repeat-	no	no	0.917	0.926	0.314	6e-72
Q93WC5	502	Pentatricopeptide repeat-	no	no	0.921	0.910	0.331	5e-69
Q9SY07	532	Pentatricopeptide repeat-	no	no	0.877	0.817	0.321	3e-65
Q9FZ24	537	Pentatricopeptide repeat-	no	no	0.927	0.856	0.313	7e-63
Q3E911	491	Pentatricopeptide repeat-	no	no	0.909	0.918	0.291	1e-58
Q9C7F1	566	Putative pentatricopeptid	no	no	0.649	0.568	0.345	3e-47
Q94B59	409	Pentatricopeptide repeat-	no	no	0.643	0.779	0.328	6e-46

>sp|Q84JR3|PP334_ARATH Pentatricopeptide repeat-containing protein At4g21705, mitochondrial OS=Arabidopsis thaliana GN=At4g21705 PE=2 SV=1

 Score =  588 bits (1517), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 281/477 (58%), Positives = 356/477 (74%), Gaps = 1/477 (0%)

Query: 15  NAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRK 74
           N + SR+YYTNR+ KTTLYS ISPLG+P + + PEL NWV+ G KV V EL RI+ DLR+
Sbjct: 10  NLIASRYYYTNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRR 69

Query: 75  RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY 134
           RKRF  ALEVS WMN  G+CVF+P +HAV LDLIGRV+GF++AE YF NLK+  K  +TY
Sbjct: 70  RKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTY 129

Query: 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA 194
           GALLNCYVRQ+  +K+L HF KMKEMG   S+LTYN+IMCLY+  GQ+EKVP VL EMK 
Sbjct: 130 GALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKE 189

Query: 195 KNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID 254
           +N+ PDN+SYRICIN++GA  DLE +   LR+ME +  I +DW+TYA AA FYI     D
Sbjct: 190 ENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCD 249

Query: 255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314
           +A ++LK +E RLE+KDG GYN LI+LYA LG K EVLRLWDLEK  CKR IN+DY+T+L
Sbjct: 250 RAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVL 309

Query: 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374
           ++L+K+    EAE+VL EW+ SGN YD R+PN VI GY    + + AEA+LEDL  +GKA
Sbjct: 310 QSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKA 369

Query: 375 TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQ 434
           TTP SW +VA  Y + G  E  F+CMK AL V V  + W+P   ++TS+LS +GDEGS++
Sbjct: 370 TTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLK 429

Query: 435 DVEAFVAALRTVIPMNRQMYHAFIKANIR-NGKGVDELLDSMKADGIDEDEETKEIL 490
           +VE+FVA+LR  I +N+QMYHA +KA+IR  G+ +D LL  MK D I+ DEET  IL
Sbjct: 430 EVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SKU6|PP166_ARATH Pentatricopeptide repeat-containing protein At2g20710, mitochondrial OS=Arabidopsis thaliana GN=At2g20710 PE=2 SV=1

 Score =  289 bits (740), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 169/459 (36%), Positives = 257/459 (55%), Gaps = 10/459 (2%)

Query: 31  TLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNR 90
           TL   ++  G+P   I   LD W+  GN V+  EL  II+ LRK  RFS AL++SDWM+ 
Sbjct: 39  TLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSE 98

Query: 91  KGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKA 150
             +   +  D A++LDLI +V G   AE +F  +  + + Y  YGALLNCY  ++   KA
Sbjct: 99  HRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKA 158

Query: 151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210
              F++MKE+G     L YN ++ LY +TG+Y  V  +L EM+ + + PD F+    +++
Sbjct: 159 EQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHA 218

Query: 211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-Q 269
           Y   SD+EGME  L   E+   + LDW TYA  A+ YIKA L +KA ++L+K+E+ +  Q
Sbjct: 219 YSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQ 278

Query: 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329
           K    Y  L+S Y + G K EV RLW L K     Y N  YI+++ AL+K+ + EE EK+
Sbjct: 279 KRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFY-NTGYISVISALLKMDDIEEVEKI 337

Query: 330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389
           ++EWE   + +D RIP+ +I GYC  G+++ AE ++  LV+K +    ++W  +A GY  
Sbjct: 338 MEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKM 397

Query: 390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
           AGK E+  +  K A+   V   GW+P   V+ S +  L  EG  +D+E     LR +   
Sbjct: 398 AGKMEKAVEKWKRAIE--VSKPGWRPHQVVLMSCVDYL--EGQ-RDMEGLRKILRLLSER 452

Query: 450 NRQMYHAFIKANIRNGKGVD-ELLDSMKADGIDEDEETK 487
               Y   +     NG G+  +++D+M      E+ E +
Sbjct: 453 GHISYDQLLYD--MNGAGLSWKIVDAMGKGRYVEEREVR 489

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LPS6|PPR3_ARATH Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2

 Score =  275 bits (702), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 153/430 (35%), Positives = 242/430 (56%), Gaps = 4/430 (0%)

Query: 31  TLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNR 90
            +Y  IS +  P       L+ W K G K+   EL R++++LRK KR +QALEV DWMN 
Sbjct: 68  AIYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNN 127

Query: 91  KGICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDK 149
           +G     +  D A+QLDLIG+V G   AE +F  L ++ K  + YG+LLN YVR +  +K
Sbjct: 128 RGERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREK 187

Query: 150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209
           A +    M++ G AL  L +N +M LY    +Y+KV  ++ EMK K+I  D +SY I ++
Sbjct: 188 AEALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLS 247

Query: 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ 269
           S G+   +E ME++ ++M+S   I  +W+T+++ A  YIK    +KA D L+K E R+  
Sbjct: 248 SCGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITG 307

Query: 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329
           ++ I Y++L+SLY SLGNK E+ R+W + K+      N  Y  ++ +L+++G+ E AEKV
Sbjct: 308 RNRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKV 367

Query: 330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389
            +EW    +SYD RIPN ++  Y  N  ++ AE + + +VE G   + ++W ++A G+  
Sbjct: 368 YEEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTR 427

Query: 390 AGKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIP 448
                    C++ A S   EG   W+P   +++       +E  V   EA +  LR    
Sbjct: 428 KRCISEALTCLRNAFS--AEGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGD 485

Query: 449 MNRQMYHAFI 458
           +  + Y A I
Sbjct: 486 LEDKSYLALI 495

Arabidopsis thaliana (taxid: 3702)

>sp|O22714|PPR86_ARATH Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana GN=At1g60770 PE=2 SV=1

 Score =  271 bits (694), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 146/464 (31%), Positives = 251/464 (54%), Gaps = 9/464 (1%)

Query: 32  LYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRK 91
           LY+ +   G    ++  +L+ ++K    V   E+   I+ LR R  +  AL++S+ M  +
Sbjct: 25  LYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALKLSEVMEER 84

Query: 92  GICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKAL 151
           G+      D A+ LDL+ +     + E+YF +L +  KT  TYG+LLNCY ++  T+KA 
Sbjct: 85  GMNKTV-SDQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCKELLTEKAE 143

Query: 152 SHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSY 211
               KMKE+ I  S+++YN +M LY+KTG+ EKVP ++ E+KA+N+ PD+++Y + + + 
Sbjct: 144 GLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYTYNVWMRAL 203

Query: 212 GARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD 271
            A +D+ G+E ++ EM     +  DW+TY++ A  Y+ A L  KA   L++ E +  Q+D
Sbjct: 204 AATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQELEMKNTQRD 263

Query: 272 GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLK 331
              Y FLI+LY  LG  +EV R+W   + A  +  N  Y+ M++ L+KL +   AE + K
Sbjct: 264 FTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDLPGAETLFK 323

Query: 332 EWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG 391
           EW+ + ++YD RI N +I  Y   GL+Q A  + E    +G      +W +    Y  +G
Sbjct: 324 EWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSG 383

Query: 392 KTERGFQCMKAALSVYVEGKG----WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI 447
              R  +CM  A+S+   GKG    W P P+ + +++S    +  V   E  +  L+   
Sbjct: 384 DMARALECMSKAVSI---GKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGT 440

Query: 448 P-MNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
             +  +++   I+     GK    +   +K + ++ +E TK++L
Sbjct: 441 DNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLL 484

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WC5|PP300_ARATH Pentatricopeptide repeat-containing protein At4g01990, mitochondrial OS=Arabidopsis thaliana GN=At4g01990 PE=2 SV=1

 Score =  262 bits (669), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 153/461 (33%), Positives = 247/461 (53%), Gaps = 4/461 (0%)

Query: 31  TLYSIISPLGN-PGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMN 89
           ++Y  +S LG   G ++E  L+ +V  G  V+  +L R  +DLRK ++  +ALE+ +WM 
Sbjct: 40  SIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWME 99

Query: 90  RKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDK 149
           RK I  F   DHA++L+LI +  G  +AE+YF++L D  K   TYG+LLNCY  +++  K
Sbjct: 100 RKEI-AFTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVK 158

Query: 150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209
           A +HF  M ++    ++L +N++M +Y   GQ EKVP ++  MK K+I P + +Y + I 
Sbjct: 159 AKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQ 218

Query: 210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ 269
           S G+  DL+G+E +L EM+++   +  W+T+A+ A  YIK  L  KA + LK  E  +  
Sbjct: 219 SCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNP 278

Query: 270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329
                Y+FLI+LY  + N SEV R+WDL K       N  Y+TML AL KL + +  +KV
Sbjct: 279 DVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKV 338

Query: 330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389
             EWE +  +YD R+ N  I  Y    + + AEA+    ++K K     +  ++      
Sbjct: 339 FAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLK 398

Query: 390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
             + +   +  +AA  V  + K W    ++I+S      +   V   E F   L    P+
Sbjct: 399 NDQADLALKHFEAA--VLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPL 456

Query: 450 NRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
           + + Y   +K  +  GK   ++   ++  GI  DEE + +L
Sbjct: 457 SSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLL 497

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SY07|PP302_ARATH Pentatricopeptide repeat-containing protein At4g02820, mitochondrial OS=Arabidopsis thaliana GN=At4g02820 PE=2 SV=1

 Score =  249 bits (637), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/442 (32%), Positives = 247/442 (55%), Gaps = 7/442 (1%)

Query: 53  WVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH 112
           W + G+ VR  EL RI+R+LRK KR+  ALE+ +WM  +        D+AV LDLI ++ 
Sbjct: 84  WKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIR 143

Query: 113 GFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI 172
           G  SAE +F ++ D  + +    +LL+ YV+ + +DKA + F KM E G   S L YN +
Sbjct: 144 GLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHM 203

Query: 173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME-IILREMESQP 231
           + +Y   GQ+EKVP ++ E+K +   PD  +Y + + ++ + +D+EG E + L+  E + 
Sbjct: 204 LSMYISRGQFEKVPVLIKELKIRT-SPDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEKL 262

Query: 232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEV 291
           +   DW TY+   + Y K + ++KA   LK+ E+ + +K+ + Y  LISL+A+LG+K  V
Sbjct: 263 NP--DWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGV 320

Query: 292 LRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351
              W   K++ K+  + +Y++M+ A++KLGE E+A+ +  EWE    + D RIPN ++  
Sbjct: 321 NLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAE 380

Query: 352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK 411
           Y N   V   E   E +VEKG   + ++W ++   Y      E+   C   A+      K
Sbjct: 381 YMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSV---K 437

Query: 412 GWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDEL 471
            W  + +++     +L ++G+V+  E  +  L+    +N Q+Y++ ++   + G+    +
Sbjct: 438 KWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALIV 497

Query: 472 LDSMKADGIDEDEETKEILVCT 493
            + M  D ++ DEETKE++  T
Sbjct: 498 EERMAKDNVELDEETKELIRLT 519

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZ24|PPR4_ARATH Pentatricopeptide repeat-containing protein At1g02370, mitochondrial OS=Arabidopsis thaliana GN=At1g02370 PE=2 SV=1

 Score =  241 bits (616), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 146/465 (31%), Positives = 240/465 (51%), Gaps = 5/465 (1%)

Query: 32  LYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRK 91
           LY  +S L   G  +   L+ ++  G  VR  +L R  + LRK +R   A E+ DWM ++
Sbjct: 73  LYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKR 132

Query: 92  GICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQ-TYGALLNCYVRQRQTDKA 150
            +  F+  DHA+ LDLIG+  G  +AE+YF+NL    K +Q TYGAL+NCY  + + +KA
Sbjct: 133 KM-TFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKA 191

Query: 151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210
            +HF  M E+    ++L +N++M +Y +  Q EKVP ++  MK + I P   +Y I + S
Sbjct: 192 KAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQS 251

Query: 211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK 270
            G+ +DL+G+E I+ EM         W+T+++ A  Y KA L +KA   LK  EE++   
Sbjct: 252 CGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPN 311

Query: 271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVL 330
           +   ++FL+SLYA +    EV R+W+  K A     N  Y+ ML+A+ KLG+ +  +K+ 
Sbjct: 312 NRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIF 371

Query: 331 KEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA 390
            EWE    +YD R+ N  I  Y    + + AE IL+  ++K K     +  ++     + 
Sbjct: 372 TEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLEN 431

Query: 391 GKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
            K +   + ++AA+S   E K  W    ++++           V   E F   L    P+
Sbjct: 432 DKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPL 491

Query: 450 NRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL--VC 492
           + +     IK      K   ++ + +    I+  EE +++L  VC
Sbjct: 492 DSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKTVC 536

Arabidopsis thaliana (taxid: 3702)

>sp|Q3E911|PP400_ARATH Pentatricopeptide repeat-containing protein At5g27460 OS=Arabidopsis thaliana GN=At5g27460 PE=2 SV=1

 Score =  228 bits (580), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 133/457 (29%), Positives = 236/457 (51%), Gaps = 6/457 (1%)

Query: 28  NKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDW 87
           N+ +L  I+   G P   +   L   + +G+ V + EL+ I + L +  R+  AL++ +W
Sbjct: 37  NRNSLKEILRKNG-PRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEW 95

Query: 88  MNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQT----YGALLNCYVR 143
           M  +    F+  D A++LDLI + HG    E YF  L     + +     Y  LL  YV+
Sbjct: 96  MENQKDIEFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYVK 155

Query: 144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFS 203
            +   +A +   K+  +G  ++   +N++M LY  +GQYEKV  V++ MK   I  +  S
Sbjct: 156 NKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKIPRNVLS 215

Query: 204 YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263
           Y + +N+    S +  +E + +EM     + + WS+  + A+ YIK+   +KA  VL+ A
Sbjct: 216 YNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLEDA 275

Query: 264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH 323
           E+ L + + +GY FLI+LYASLGNK  V+RLW++ K+ C R    +YI +L +L+K G+ 
Sbjct: 276 EKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTGDL 335

Query: 324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVV 383
           EEAE+V  EWE    +YD R+ N ++  Y  NG ++ AE++   ++E+G      +W ++
Sbjct: 336 EEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWEIL 395

Query: 384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAAL 443
             G+      E+    M     V +    W+P   ++ +I      E  +++  A+V  L
Sbjct: 396 MEGWVKCENMEKAIDAMHQVF-VLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVRDL 454

Query: 444 RTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGI 480
             +   +  +Y   ++ +    +   ++ + MK D +
Sbjct: 455 HRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLDKL 491

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C7F1|PPR61_ARATH Putative pentatricopeptide repeat-containing protein At1g28020 OS=Arabidopsis thaliana GN=At1g28020 PE=3 SV=2

 Score =  189 bits (481), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 112/324 (34%), Positives = 177/324 (54%), Gaps = 2/324 (0%)

Query: 44  TRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAV 103
            +I P L+ W + GN+V    ++ II+ LR   +  QAL+VS+WM+++ IC   P D A 
Sbjct: 50  AQIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAA 109

Query: 104 QLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQT-DKALSHFRKMKEMGI 162
           +L LI  V G   AE +F ++  + +    Y +LLN Y R  +T  KA + F+KM+++G+
Sbjct: 110 RLHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGL 169

Query: 163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI 222
            L  + YN +M LYS     EKV ++L EMK  ++  DN +    +  Y A  D+  ME 
Sbjct: 170 LLRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEK 229

Query: 223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD-GIGYNFLISL 281
            L + E    I L+W T    A  Y++A    KA  +L+  E+ ++QK     Y+ L+ L
Sbjct: 230 FLNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKL 289

Query: 282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD 341
           Y   GN+ EVLR+W L K+      N  Y T++ +L+K+ +   AE++ K WE     +D
Sbjct: 290 YGEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFD 349

Query: 342 TRIPNAVIIGYCNNGLVQNAEAIL 365
            RIP  +  GY + G+ + AE ++
Sbjct: 350 HRIPTMLASGYRDRGMTEKAEKLM 373

Arabidopsis thaliana (taxid: 3702)

>sp|Q94B59|PP372_ARATH Pentatricopeptide repeat-containing protein At5g09450, mitochondrial OS=Arabidopsis thaliana GN=At5g09450 PE=2 SV=1

 Score =  185 bits (470), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 180/326 (55%), Gaps = 7/326 (2%)

Query: 29  KTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWM 88
           K  L S I  L  P       L+ W+  GN++ + EL+ I ++LR+ +R+  ALEV++WM
Sbjct: 54  KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWM 113

Query: 89  NRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTD 148
            +      +  D+A ++DLI +V G  +AE YF  L  D KT +TY +LL+ Y   +QT+
Sbjct: 114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTE 173

Query: 149 KALSHFRKMKEM-GIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC 207
           +A + F+++ E   +    +TYN++M LY   GQ EKVP+V+  +K K + PD F+Y + 
Sbjct: 174 RAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLW 233

Query: 208 INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK-KAEER 266
           ++S  A  +++ +  IL EM         W  Y      YI ++ +  A   L  +AE+ 
Sbjct: 234 LSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKS 293

Query: 267 LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEA 326
           + Q++ I Y+FL+ L+  LGNK  + ++W   +   +   +R YI +L + + LG   EA
Sbjct: 294 ISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREA 353

Query: 327 EKVLKEWELSGNS-YDT----RIPNA 347
           E+++ +W+ S  + +D     RI NA
Sbjct: 354 EEIIHQWKESKTTEFDASACLRILNA 379

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
359483464	506	PREDICTED: pentatricopeptide repeat-cont	0.959	0.940	0.707	0.0
147807263	506	hypothetical protein VITISV_006333 [Viti	0.959	0.940	0.701	0.0
224077120	492	predicted protein [Populus trichocarpa]	0.985	0.993	0.671	0.0
255556039	485	pentatricopeptide repeat-containing prot	0.955	0.977	0.685	0.0
224125490	494	predicted protein [Populus trichocarpa]	0.985	0.989	0.648	0.0
356555227	486	PREDICTED: pentatricopeptide repeat-cont	0.957	0.977	0.644	0.0
302143027	687	unnamed protein product [Vitis vinifera]	0.969	0.700	0.605	1e-171
225461407	504	PREDICTED: pentatricopeptide repeat-cont	0.981	0.966	0.600	1e-171
357446577	495	Pentatricopeptide repeat-containing prot	0.949	0.951	0.595	1e-169
297799892	492	pentatricopeptide repeat-containing prot	0.955	0.963	0.595	1e-167

>gi|359483464|ref|XP_003632962.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Vitis vinifera]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/476 (70%), Positives = 403/476 (84%)

Query: 15  NAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRK 74
           N + +R YYT+R  K +LY+ ISPLG+P T + PELDNWV+NGNKV V ELQRII DLRK
Sbjct: 24  NPISNRTYYTSRYGKISLYNKISPLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRK 83

Query: 75  RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY 134
           RKRFSQALE+S+WM++KGIC F+P +HAVQLDLIGRV GFLSAESYF++L++ +KT +TY
Sbjct: 84  RKRFSQALEISEWMSKKGICAFSPTEHAVQLDLIGRVRGFLSAESYFNSLQNHDKTDKTY 143

Query: 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA 194
           GALLNCYVRQRQTDK+LSH +KMKEMG A S LTYNDIMCLY+  GQ+EKVPDVLTEMK 
Sbjct: 144 GALLNCYVRQRQTDKSLSHLQKMKEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQ 203

Query: 195 KNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID 254
            N++PDNFSYRICINSYGA+SD++GME +L+EME QPHIV+DW+TYA AA+FYIKA L D
Sbjct: 204 SNVYPDNFSYRICINSYGAQSDIQGMENVLKEMERQPHIVMDWNTYAVAANFYIKAGLPD 263

Query: 255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314
           KA + LKK+EERL+++DG+GYN LISLYASLGNK+EVLRLW LEK+ACKR INRDYITML
Sbjct: 264 KAIEALKKSEERLDKRDGLGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITML 323

Query: 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374
           E+L++LGE EEAEKVL+EWE SGN YD R+PN VIIGY   GL + AEA+L++L+EKGK 
Sbjct: 324 ESLVRLGELEEAEKVLREWESSGNCYDFRVPNIVIIGYSEKGLFEKAEAMLKELMEKGKI 383

Query: 375 TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQ 434
           TTPNSW  VA+GY D G+ E+  +CMKAA+S++V  KG KP+ +VI  ILS LGD+G V+
Sbjct: 384 TTPNSWGTVASGYMDEGEMEKAVECMKAAISLHVNNKGRKPNSRVIAGILSWLGDKGRVE 443

Query: 435 DVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
           DVEAFV +LR VIPMNR+MYH  I ANIR GK VD LL SMKAD I EDEETK+IL
Sbjct: 444 DVEAFVGSLRIVIPMNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKIL 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147807263|emb|CAN64166.1| hypothetical protein VITISV_006333 [Vitis vinifera]

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/476 (70%), Positives = 402/476 (84%)

Query: 15  NAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRK 74
           N + +R YYT+R  K +LY+ ISPLG+P T + PELDNWV+NGNKV V ELQRII DLRK
Sbjct: 24  NPISNRTYYTSRYGKISLYNKISPLGDPNTSVVPELDNWVQNGNKVWVAELQRIIHDLRK 83

Query: 75  RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY 134
           RKRFSQALE+S+WM++KGIC F+P +HAVQLDLIGRV GFLSAESYF++L++ +KT +TY
Sbjct: 84  RKRFSQALEISEWMSKKGICAFSPTEHAVQLDLIGRVRGFLSAESYFNSLQNHDKTDKTY 143

Query: 135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA 194
           GALLNCYVRQRQTDK+LSH +KMKEMG A S LTYNDIMCLY+  GQ+EKVPDVLTEMK 
Sbjct: 144 GALLNCYVRQRQTDKSLSHLQKMKEMGFASSPLTYNDIMCLYTNVGQHEKVPDVLTEMKQ 203

Query: 195 KNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID 254
            +++PDNFSYRICINSY A+SD++GME +L+EME QPHIV+DW+TYA AA+FYIKA L D
Sbjct: 204 SHVYPDNFSYRICINSYAAQSDIQGMEKVLKEMERQPHIVMDWNTYAVAANFYIKAGLPD 263

Query: 255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314
           KA + LKK+EERL+++DG+GYN LISLYASLGNK+EVLRLW LEK+ACKR INRDYITML
Sbjct: 264 KAIEALKKSEERLDKRDGLGYNHLISLYASLGNKAEVLRLWSLEKSACKRNINRDYITML 323

Query: 315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374
           E+L++LGE EEAEKVL+EWE SGN YD R+PN VIIGY   GL + AEA+L++L+EKGK 
Sbjct: 324 ESLVRLGELEEAEKVLREWESSGNCYDFRVPNIVIIGYSEKGLFEKAEAMLKELMEKGKI 383

Query: 375 TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQ 434
           TTP+SW  VA+GY D G+ E+  +CMKAA+S++V  KG KP+ +VI  ILS LGD+G V+
Sbjct: 384 TTPDSWGTVASGYMDEGEMEKAVECMKAAISLHVNNKGRKPNSRVIAGILSWLGDKGRVE 443

Query: 435 DVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
           DVEAFV +LR VIPMNR+MYH  I ANIR GK VD LL SMKAD I EDEETK+IL
Sbjct: 444 DVEAFVGSLRIVIPMNRRMYHTLIMANIRAGKEVDGLLASMKADKIVEDEETKKIL 499

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077120|ref|XP_002305141.1| predicted protein [Populus trichocarpa] gi|222848105|gb|EEE85652.1| predicted protein [Populus trichocarpa]

 Score =  701 bits (1808), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/490 (67%), Positives = 398/490 (81%), Gaps = 1/490 (0%)

Query: 1   MIPKLKLSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKV 60
           M  KL   T  Q  N + +R YYTN+ NK TLYS ISPLG+  + +EPELD+WV++GNKV
Sbjct: 1   MNTKLISKTLIQNQNTIITRSYYTNKANKATLYSKISPLGSTPS-LEPELDSWVRSGNKV 59

Query: 61  RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESY 120
           RV ELQRII DLRKRKRFS AL+VS+WM++K IC+F+P +HAVQLDLIGRVHGF+SAE+Y
Sbjct: 60  RVAELQRIIHDLRKRKRFSHALQVSEWMHKKDICIFSPSEHAVQLDLIGRVHGFVSAENY 119

Query: 121 FSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG 180
           F+NL+D +K  +TYGALLNCYVRQR+TDK++ H +KMKEMG A S+LTYNDIMCLY+  G
Sbjct: 120 FNNLRDQDKNEKTYGALLNCYVRQRETDKSILHLQKMKEMGFAKSSLTYNDIMCLYTNVG 179

Query: 181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTY 240
           Q+EKVP VL EMK  N+ PDNFSYR+CINS+GAR DLEGME IL EME QP IV+DW+TY
Sbjct: 180 QHEKVPQVLNEMKENNVLPDNFSYRLCINSFGARDDLEGMEKILNEMEHQPDIVMDWNTY 239

Query: 241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKT 300
           A AA+FYI  +L DKA D LKK+E RL++KDG GYN LISLYA LGNK+EVLRLWDLEK+
Sbjct: 240 AVAANFYIIGDLTDKAIDTLKKSEARLDKKDGTGYNHLISLYAKLGNKTEVLRLWDLEKS 299

Query: 301 ACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQN 360
           AC+R+IN+DYI M+E+L+KL E EEAEK+LKEWE SGN YD R+PN +IIGY   GL + 
Sbjct: 300 ACERHINKDYIIMMESLLKLSEFEEAEKMLKEWESSGNFYDVRVPNTLIIGYSRKGLCEK 359

Query: 361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVI 420
           A+A+LE+L EKGK T PNSW +VAAG+FD  +  + F CMKAAL +YVE KGWKP+ +VI
Sbjct: 360 AKALLENLTEKGKMTLPNSWGIVAAGFFDKSEVAKAFSCMKAALCLYVENKGWKPNQRVI 419

Query: 421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGI 480
             ILS LGDEGS +D EAFV++L+TVIP+NR+MYHA +KANIR GK V  LLD MK   I
Sbjct: 420 NGILSWLGDEGSAEDAEAFVSSLKTVIPVNREMYHAVLKANIRAGKEVHRLLDGMKTYNI 479

Query: 481 DEDEETKEIL 490
            EDEETK+IL
Sbjct: 480 KEDEETKKIL 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556039|ref|XP_002519054.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223541717|gb|EEF43265.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  693 bits (1788), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 325/474 (68%), Positives = 393/474 (82%)

Query: 17  VFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRK 76
           + SR+YY NR  K TLYS ISPLG+P T + PELDNWV++GNKVRVGELQRIIRDLRKR 
Sbjct: 1   MISRYYYANRTKKVTLYSKISPLGDPNTSLVPELDNWVQDGNKVRVGELQRIIRDLRKRN 60

Query: 77  RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA 136
           RF+QALEVS+WMN+KGIC+F+  +HAVQLDLIG+V GFLSAE+YF+NL D +KT +TYGA
Sbjct: 61  RFTQALEVSEWMNKKGICIFSSTEHAVQLDLIGKVRGFLSAENYFNNLMDHDKTDKTYGA 120

Query: 137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN 196
           LLNCYVRQRQTD+++SH++KMKEMG+A S L YNDIMCLY   G YEKV  VLTEMK   
Sbjct: 121 LLNCYVRQRQTDRSISHWQKMKEMGLASSPLAYNDIMCLYINLGLYEKVLHVLTEMKENK 180

Query: 197 IFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKA 256
           I PDNFSYRICINSYGARSD++GME +L EME +    +DW+TYA  A+FYIKA L DKA
Sbjct: 181 ISPDNFSYRICINSYGARSDIQGMEKVLNEMECRLGNAMDWNTYAVVANFYIKAGLADKA 240

Query: 257 SDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 316
            D L+K+EE+L++KDGIGYN LISLYA+LG KSEVLR+WDL+K+ CKR INRD++TMLE+
Sbjct: 241 VDALRKSEEKLDKKDGIGYNHLISLYATLGIKSEVLRIWDLQKSVCKRRINRDFVTMLES 300

Query: 317 LMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT 376
           L+KLG+ EEAEKVLKEWE SGN YD RIPN V++GY  NGL + AEA LE L+EKG+ATT
Sbjct: 301 LVKLGDLEEAEKVLKEWESSGNFYDVRIPNIVVVGYSKNGLHEKAEASLEALMEKGRATT 360

Query: 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDV 436
           PNSWA++A+GY + G+  + F+CMKAA S+ VE KGWKP+P+V+  IL  LGDEGS +DV
Sbjct: 361 PNSWAMIASGYLEKGEKAKAFECMKAAFSLNVEKKGWKPNPRVVMDILIWLGDEGSPEDV 420

Query: 437 EAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
           EAFVA+L   IP+NRQ+YHA +KA IR+G+   E+LD MK D IDEDEETKEIL
Sbjct: 421 EAFVASLSVAIPLNRQIYHALLKAKIRSGRDAHEILDRMKTDKIDEDEETKEIL 474

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125490|ref|XP_002329818.1| predicted protein [Populus trichocarpa] gi|222870880|gb|EEF08011.1| predicted protein [Populus trichocarpa]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 318/490 (64%), Positives = 388/490 (79%), Gaps = 1/490 (0%)

Query: 1   MIPKLKLSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKV 60
           M  KL   T  Q  NA+ SR YYTN+ NK TLYS +SPLG+  + +EPELD+W++NG KV
Sbjct: 1   MNTKLISKTLNQNQNAIISRSYYTNKTNKATLYSKLSPLGSTPS-LEPELDSWIQNGKKV 59

Query: 61  RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESY 120
           +V ELQRII D R RKRF+ AL+VS+WMN+KGIC+F+P  HAVQLDLIGRVHGF+SAE+Y
Sbjct: 60  KVAELQRIIHDFRMRKRFTHALQVSEWMNKKGICIFSPSQHAVQLDLIGRVHGFVSAENY 119

Query: 121 FSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG 180
           F+NL+D +K  +TYGALLNCYV++R+TDK++SH +KMKEMG A S+L+YNDIMCLY+  G
Sbjct: 120 FNNLRDQDKNEKTYGALLNCYVQKRETDKSISHLQKMKEMGFAKSSLSYNDIMCLYTNVG 179

Query: 181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTY 240
           Q+EKVP VL EMK  N+ PDNFSYR+C+NSYGAR DLEGME +L EME QP IV+DW++Y
Sbjct: 180 QHEKVPQVLNEMKENNVSPDNFSYRLCMNSYGARGDLEGMEKMLNEMEHQPDIVVDWNSY 239

Query: 241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKT 300
           A AA  YIK  L DKA D LKK+E RL++KDG GYN LISLYA+LG K+EVLRLWDLEK+
Sbjct: 240 AVAASSYIKGGLTDKAIDSLKKSETRLDKKDGTGYNHLISLYATLGEKTEVLRLWDLEKS 299

Query: 301 ACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQN 360
            C+R IN+DYI ++ +L+KL E EE EKVLKEWE SGN YD R+PN +IIGY   GL + 
Sbjct: 300 TCERPINKDYINIMASLVKLDEFEEVEKVLKEWEASGNFYDVRVPNTLIIGYSGKGLYEK 359

Query: 361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVI 420
           A+A+LE+L EKGKAT PN W  VAAG+FD  +  + F CMKAAL +Y E K WKP+ KVI
Sbjct: 360 AKALLENLTEKGKATLPNIWGKVAAGFFDKNEVAKAFSCMKAALCLYEENKEWKPNQKVI 419

Query: 421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGI 480
           T ILS LGDEGS +D EAFV++L+ VIPMNR+MYHA +KA+IR GK V  LLD MK   I
Sbjct: 420 TGILSWLGDEGSAEDAEAFVSSLKNVIPMNREMYHAVLKAHIRAGKEVHGLLDGMKTCKI 479

Query: 481 DEDEETKEIL 490
            EDEETK+IL
Sbjct: 480 KEDEETKKIL 489

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555227|ref|XP_003545936.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial-like [Glycine max]

 Score =  649 bits (1674), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/475 (64%), Positives = 373/475 (78%)

Query: 16  AVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKR 75
           AV SR YYT+R  K +LYS ISPLGNP T + P LD+WV  GNK+RV ELQRIIRDLRKR
Sbjct: 7   AVVSRSYYTSRSKKPSLYSKISPLGNPNTSVVPVLDDWVFKGNKLRVAELQRIIRDLRKR 66

Query: 76  KRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYG 135
            RFSQAL++S+WM+ KG+C+F+P ++AV LDLIG+VHGF SAE+YF  LKD  KT +TYG
Sbjct: 67  SRFSQALQISEWMHNKGVCIFSPTEYAVHLDLIGKVHGFSSAETYFDALKDQHKTNKTYG 126

Query: 136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK 195
           ALLNCYVRQRQTDKALSH +KMK++G A S LTYNDIMCLY+  GQ+EKVPDVL EMK  
Sbjct: 127 ALLNCYVRQRQTDKALSHLQKMKDLGFASSPLTYNDIMCLYTNIGQHEKVPDVLREMKQN 186

Query: 196 NIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK 255
            + PDNFSYRICINSYG RSD  G+E +L+EME+QP+IV+DW+TY+ AA+FYIKA L   
Sbjct: 187 QVLPDNFSYRICINSYGVRSDFGGVERVLKEMETQPNIVMDWNTYSIAANFYIKAGLTRD 246

Query: 256 ASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE 315
           A   L+K+EERL+ KDG GYN LISLYA LG K+EV+R+WDLEK ACKR INRD+ T+LE
Sbjct: 247 AVCALRKSEERLDNKDGQGYNHLISLYAQLGLKNEVMRIWDLEKNACKRCINRDFTTLLE 306

Query: 316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT 375
           +L+KLGE +EAEK+LKEWE S N YD  IP+ VIIGY   GL + A A+LE+L  K K T
Sbjct: 307 SLVKLGELDEAEKILKEWESSDNCYDFGIPSIVIIGYSQKGLHEKALAMLEELQNKEKVT 366

Query: 376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD 435
           TPN W++VA GY   G+ E+ F+C K ALS+YVE KGWKP+ KVI  +L  +GD GSV+D
Sbjct: 367 TPNCWSIVAGGYIHKGEMEKAFKCFKTALSLYVENKGWKPNAKVIAELLRWIGDNGSVED 426

Query: 436 VEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
            E  V+ LR  +P+NRQMYH  IK  IR GK VD+LL  M+ DGIDE++ETK+I+
Sbjct: 427 AEVLVSLLRNAVPVNRQMYHTLIKTYIRGGKEVDDLLGRMEKDGIDENKETKKII 481

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143027|emb|CBI20322.3| unnamed protein product [Vitis vinifera]

 Score =  608 bits (1567), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 292/482 (60%), Positives = 364/482 (75%), Gaps = 1/482 (0%)

Query: 9   TNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRI 68
           + T I N    R  YT R     LYS ISPLG P   + P LD WV+ G KVR  EL RI
Sbjct: 16  SQTLISNVCSVRSVYTGRFANINLYSRISPLGTPNLSLVPVLDQWVEEGKKVRDVELHRI 75

Query: 69  IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE 128
           IRDLR RKR++QALEVS+WM+ K +C F+P   AVQLDLIG+V G  SAE+YF+N+  +E
Sbjct: 76  IRDLRSRKRYAQALEVSEWMSSKELCPFSPSARAVQLDLIGQVRGLESAENYFNNMSAEE 135

Query: 129 KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDV 188
           K  + YGALLNCYVR+R  DK+LSH +KMKE+G A + L YN +MCLY  T Q EK+PDV
Sbjct: 136 KIDKMYGALLNCYVRERVIDKSLSHLQKMKELGFASTPLPYNGLMCLYINTDQLEKIPDV 195

Query: 189 LTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYI 248
           L+EM+   I PDNFSYR+CINSYGARSDL  ME IL EMES+ HI +DW TY+  A+FYI
Sbjct: 196 LSEMQENGISPDNFSYRLCINSYGARSDLNSMEKILEEMESKSHIHIDWMTYSMVANFYI 255

Query: 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR 308
           KA L +KA   LKKAE +L  KD +GYN LISLYASLG+K+E++RLW+  KTA K+ INR
Sbjct: 256 KAGLNEKALFFLKKAETKL-HKDPLGYNHLISLYASLGSKAEMMRLWERRKTASKKLINR 314

Query: 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDL 368
           DYITML +L+KLGE E+ E +LKEWE SGN YD R+PN ++IG+C  GL++ AE++L D+
Sbjct: 315 DYITMLGSLVKLGELEDTEALLKEWESSGNCYDFRVPNTLLIGFCQKGLIEKAESMLRDI 374

Query: 369 VEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLG 428
           VE+GK  TPNSW++VAAGY +    E+ F+CMK A++V  E KGW+P PKVI+SILS LG
Sbjct: 375 VEEGKTPTPNSWSIVAAGYIEKQNMEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLG 434

Query: 429 DEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKE 488
           D   V++VE FV+AL+ VIPM+R+MYHA I+A+IR GK VD +LDSMKAD IDEDEET++
Sbjct: 435 DNRDVEEVETFVSALKAVIPMDREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRK 494

Query: 489 IL 490
           IL
Sbjct: 495 IL 496

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225461407|ref|XP_002282230.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Vitis vinifera]

 Score =  607 bits (1565), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/488 (60%), Positives = 366/488 (75%), Gaps = 1/488 (0%)

Query: 9   TNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRI 68
           + T I N    R  YT R     LYS ISPLG P   + P LD WV+ G KVR  EL RI
Sbjct: 16  SQTLISNVCSVRSVYTGRFANINLYSRISPLGTPNLSLVPVLDQWVEEGKKVRDVELHRI 75

Query: 69  IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE 128
           IRDLR RKR++QALEVS+WM+ K +C F+P   AVQLDLIG+V G  SAE+YF+N+  +E
Sbjct: 76  IRDLRSRKRYAQALEVSEWMSSKELCPFSPSARAVQLDLIGQVRGLESAENYFNNMSAEE 135

Query: 129 KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDV 188
           K  + YGALLNCYVR+R  DK+LSH +KMKE+G A + L YN +MCLY  T Q EK+PDV
Sbjct: 136 KIDKMYGALLNCYVRERVIDKSLSHLQKMKELGFASTPLPYNGLMCLYINTDQLEKIPDV 195

Query: 189 LTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYI 248
           L+EM+   I PDNFSYR+CINSYGARSDL  ME IL EMES+ HI +DW TY+  A+FYI
Sbjct: 196 LSEMQENGISPDNFSYRLCINSYGARSDLNSMEKILEEMESKSHIHIDWMTYSMVANFYI 255

Query: 249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR 308
           KA L +KA   LKKAE +L  KD +GYN LISLYASLG+K+E++RLW+  KTA K+ INR
Sbjct: 256 KAGLNEKALFFLKKAETKL-HKDPLGYNHLISLYASLGSKAEMMRLWERRKTASKKLINR 314

Query: 309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDL 368
           DYITML +L+KLGE E+ E +LKEWE SGN YD R+PN ++IG+C  GL++ AE++L D+
Sbjct: 315 DYITMLGSLVKLGELEDTEALLKEWESSGNCYDFRVPNTLLIGFCQKGLIEKAESMLRDI 374

Query: 369 VEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLG 428
           VE+GK  TPNSW++VAAGY +    E+ F+CMK A++V  E KGW+P PKVI+SILS LG
Sbjct: 375 VEEGKTPTPNSWSIVAAGYIEKQNMEKAFECMKEAIAVLAENKGWRPKPKVISSILSWLG 434

Query: 429 DEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKE 488
           D   V++VE FV+AL+ VIPM+R+MYHA I+A+IR GK VD +LDSMKAD IDEDEET++
Sbjct: 435 DNRDVEEVETFVSALKAVIPMDREMYHAQIRASIRAGKEVDGILDSMKADKIDEDEETRK 494

Query: 489 ILVCTMEK 496
           IL    +K
Sbjct: 495 ILSLKHDK 502

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446577|ref|XP_003593564.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355482612|gb|AES63815.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  600 bits (1547), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 281/472 (59%), Positives = 362/472 (76%), Gaps = 1/472 (0%)

Query: 19  SRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRF 78
           +R YYT++  K +LYS+ISPLGN  T + P+LD+WV  GNKV VGELQRI+RDLRKR RF
Sbjct: 17  NRSYYTSKTKKPSLYSVISPLGNQTTSVAPQLDDWVYKGNKVSVGELQRIVRDLRKRSRF 76

Query: 79  SQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALL 138
           +QAL+VS+WMN+ G+C+F+P +HAV LDL GRVHGF +AE+YF++LKD E+  +T+GALL
Sbjct: 77  TQALQVSEWMNKIGVCIFSPVEHAVHLDLTGRVHGFYAAETYFNSLKDIERNEKTHGALL 136

Query: 139 NCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF 198
           NCYVRQRQ DK+LSH +KMKE+G ALS+LTYN+IMCLY+  GQ+EKV DV  EMK  ++ 
Sbjct: 137 NCYVRQRQVDKSLSHLKKMKELGFALSSLTYNNIMCLYTNIGQHEKVSDVFNEMKENHVL 196

Query: 199 PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASD 258
           PDNFSYRICI SYG RSD++GM  IL+EMESQPHIV+DW+TY+  A+FYIKA L  +A D
Sbjct: 197 PDNFSYRICIGSYGVRSDIDGMNAILKEMESQPHIVMDWNTYSVVANFYIKAELSSEAID 256

Query: 259 VLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALM 318
            L+K E+RL+ KDG GYN LISLYA LG K+EVLRLWD+EK+ACKR +NRD+ITMLE+L+
Sbjct: 257 ALRKCEKRLDDKDGEGYNHLISLYARLGKKNEVLRLWDMEKSACKRCLNRDFITMLESLV 316

Query: 319 KLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPN 378
           KL E +EA+K+LKEWE SGN YD  +PN V++GY      + AEAIL+D+ +K K T  +
Sbjct: 317 KLEEFDEADKILKEWEFSGNCYDYGVPNVVVVGYSEKDFPEKAEAILQDIWKKRKYTDTS 376

Query: 379 SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEA 438
           SW +VA  Y   G+ E+  +C+K A+ +Y E K  KP+ +VI+SI S +GD  SV+D EA
Sbjct: 377 SWILVADRYLLKGEMEKALECLKTAVCLYPENKKRKPNHRVISSIYSWIGDNASVEDAEA 436

Query: 439 FVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
            V  L+     NR MYH+ +KA +R  K VD +LD MK D IDE  +T EI+
Sbjct: 437 LVRLLKK-FQKNRHMYHSLLKAYVRADKEVDGVLDRMKEDNIDETGKTAEIV 487

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799892|ref|XP_002867830.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297313666|gb|EFH44089.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  595 bits (1533), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 283/475 (59%), Positives = 358/475 (75%), Gaps = 1/475 (0%)

Query: 17  VFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRK 76
           + SR+YYTNR+ KTTLYS ISPLG+P + + PEL NWV+ G KV V EL RI+ DLR+RK
Sbjct: 12  IASRYYYTNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRRRK 71

Query: 77  RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA 136
           RF  ALEVS WMN  G+CVF+P +HAV LDLIGRV+GF++AE YF NLK+  K  +TYGA
Sbjct: 72  RFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNEKTYGA 131

Query: 137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN 196
           LLNCYVRQ+  +K+L HF+KMKEMG   S+LTYN+IMCLY+  GQ+EKVP VL EMK +N
Sbjct: 132 LLNCYVRQQNVEKSLLHFQKMKEMGFVSSSLTYNNIMCLYTNIGQHEKVPGVLDEMKEEN 191

Query: 197 IFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKA 256
           + PDN+S+RICIN++GA SDLE +  ILR+ME +P   +DW+TYA AA FYI     D+A
Sbjct: 192 VAPDNYSFRICINAFGAMSDLERIGGILRDMERRPDFTMDWNTYAVAAKFYIDGGDCDRA 251

Query: 257 SDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA 316
            ++LK +E RLE+KDG GYN LI+LYA LGNK EVLRLW+LEK ACKR IN+DY+T+L++
Sbjct: 252 VELLKMSEYRLEKKDGEGYNHLITLYARLGNKIEVLRLWELEKEACKRRINQDYLTVLQS 311

Query: 317 LMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT 376
           LMK+   +EAE VL EWE SGN YD R+PN VI GY    + + AEA+LEDL  +GK TT
Sbjct: 312 LMKIDGLKEAEVVLTEWESSGNCYDFRVPNTVIRGYTGKSMEEKAEAMLEDLARRGKTTT 371

Query: 377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDV 436
           P SW +VA  Y + G     F+CMK AL + VE + W+P  K++TS+LS LG EGS+++V
Sbjct: 372 PESWGLVATAYAEKGALGNAFKCMKTALGIEVENRKWRPGLKLVTSVLSWLGGEGSLKEV 431

Query: 437 EAFVAALRTVIPMNRQMYHAFIKANIR-NGKGVDELLDSMKADGIDEDEETKEIL 490
           E+FVA+LR  I +N+QMYHA +KA+IR  G  +D LL  MK D I+ DEET  IL
Sbjct: 432 ESFVASLRNCIGVNKQMYHALVKADIREGGSNIDTLLKRMKDDQIETDEETTVIL 486

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	496
TAIR|locus:504955535	492	AT4G21705 "AT4G21705" [Arabido	0.959	0.967	0.589	8.5e-152
TAIR|locus:2051379	490	AT2G20710 [Arabidopsis thalian	0.899	0.910	0.371	1e-75
TAIR|locus:2204793	524	AT1G02150 [Arabidopsis thalian	0.899	0.851	0.345	4.3e-70
TAIR|locus:2036586	491	AT1G60770 [Arabidopsis thalian	0.939	0.949	0.309	1.4e-69
TAIR|locus:2141360	502	AT4G01990 [Arabidopsis thalian	0.925	0.914	0.331	4e-67
TAIR|locus:2140220	532	AT4G02820 "AT4G02820" [Arabido	0.879	0.819	0.325	1.1e-64
TAIR|locus:2204808	537	AT1G02370 "AT1G02370" [Arabido	0.927	0.856	0.313	3.8e-62
TAIR|locus:2146390	491	AT5G27460 "AT5G27460" [Arabido	0.901	0.910	0.301	1.7e-57
TAIR|locus:2010459	566	AT1G28020 "AT1G28020" [Arabido	0.881	0.772	0.308	4.7e-48
TAIR|locus:2184807	409	AT5G09450 "AT5G09450" [Arabido	0.620	0.753	0.329	1.8e-46

TAIR|locus:504955535 AT4G21705 "AT4G21705" [Arabidopsis thaliana (taxid:3702)]

 Score = 1481 (526.4 bits), Expect = 8.5e-152, P = 8.5e-152
 Identities = 281/477 (58%), Positives = 356/477 (74%)

Query:    15 NAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRK 74
             N + SR+YYTNR+ KTTLYS ISPLG+P + + PEL NWV+ G KV V EL RI+ DLR+
Sbjct:    10 NLIASRYYYTNRVKKTTLYSKISPLGDPKSSVYPELQNWVQCGKKVSVAELIRIVHDLRR 69

Query:    75 RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY 134
             RKRF  ALEVS WMN  G+CVF+P +HAV LDLIGRV+GF++AE YF NLK+  K  +TY
Sbjct:    70 RKRFLHALEVSKWMNETGVCVFSPTEHAVHLDLIGRVYGFVTAEEYFENLKEQYKNDKTY 129

Query:   135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA 194
             GALLNCYVRQ+  +K+L HF KMKEMG   S+LTYN+IMCLY+  GQ+EKVP VL EMK 
Sbjct:   130 GALLNCYVRQQNVEKSLLHFEKMKEMGFVTSSLTYNNIMCLYTNIGQHEKVPKVLEEMKE 189

Query:   195 KNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID 254
             +N+ PDN+SYRICIN++GA  DLE +   LR+ME +  I +DW+TYA AA FYI     D
Sbjct:   190 ENVAPDNYSYRICINAFGAMYDLERIGGTLRDMERRQDITMDWNTYAVAAKFYIDGGDCD 249

Query:   255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML 314
             +A ++LK +E RLE+KDG GYN LI+LYA LG K EVLRLWDLEK  CKR IN+DY+T+L
Sbjct:   250 RAVELLKMSENRLEKKDGEGYNHLITLYARLGKKIEVLRLWDLEKDVCKRRINQDYLTVL 309

Query:   315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA 374
             ++L+K+    EAE+VL EW+ SGN YD R+PN VI GY    + + AEA+LEDL  +GKA
Sbjct:   310 QSLVKIDALVEAEEVLTEWKSSGNCYDFRVPNTVIRGYIGKSMEEKAEAMLEDLARRGKA 369

Query:   375 TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQ 434
             TTP SW +VA  Y + G  E  F+CMK AL V V  + W+P   ++TS+LS +GDEGS++
Sbjct:   370 TTPESWELVATAYAEKGTLENAFKCMKTALGVEVGSRKWRPGLTLVTSVLSWVGDEGSLK 429

Query:   435 DVEAFVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDSMKADGIDEDEETKEIL 490
             +VE+FVA+LR  I +N+QMYHA +KA+IR G + +D LL  MK D I+ DEET  IL
Sbjct:   430 EVESFVASLRNCIGVNKQMYHALVKADIREGGRNIDTLLQRMKDDKIEIDEETTVIL 486

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2051379 AT2G20710 [Arabidopsis thaliana (taxid:3702)]

 Score = 763 (273.6 bits), Expect = 1.0e-75, P = 1.0e-75
 Identities = 170/457 (37%), Positives = 258/457 (56%)

Query:    31 TLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNR 90
             TL   ++  G+P   I   LD W+  GN V+  EL  II+ LRK  RFS AL++SDWM+ 
Sbjct:    39 TLQRRVARSGDPSASIIKVLDGWLDQGNLVKTSELHSIIKMLRKFSRFSHALQISDWMSE 98

Query:    91 KGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKA 150
               +   +  D A++LDLI +V G   AE +F  +  + + Y  YGALLNCY  ++   KA
Sbjct:    99 HRVHEISEGDVAIRLDLIAKVGGLGEAEKFFETIPMERRNYHLYGALLNCYASKKVLHKA 158

Query:   151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210
                F++MKE+G     L YN ++ LY +TG+Y  V  +L EM+ + + PD F+    +++
Sbjct:   159 EQVFQEMKELGFLKGCLPYNVMLNLYVRTGKYTMVEKLLREMEDETVKPDIFTVNTRLHA 218

Query:   211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-Q 269
             Y   SD+EGME  L   E+   + LDW TYA  A+ YIKA L +KA ++L+K+E+ +  Q
Sbjct:   219 YSVVSDVEGMEKFLMRCEADQGLHLDWRTYADTANGYIKAGLTEKALEMLRKSEQMVNAQ 278

Query:   270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329
             K    Y  L+S Y + G K EV RLW L K     Y N  YI+++ AL+K+ + EE EK+
Sbjct:   279 KRKHAYEVLMSFYGAAGKKEEVYRLWSLYKELDGFY-NTGYISVISALLKMDDIEEVEKI 337

Query:   330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389
             ++EWE   + +D RIP+ +I GYC  G+++ AE ++  LV+K +    ++W  +A GY  
Sbjct:   338 MEEWEAGHSLFDIRIPHLLITGYCKKGMMEKAEEVVNILVQKWRVEDTSTWERLALGYKM 397

Query:   390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
             AGK E+  +  K A+ V     GW+P   V+ S +  L  EG  +D+E     LR +   
Sbjct:   398 AGKMEKAVEKWKRAIEV--SKPGWRPHQVVLMSCVDYL--EGQ-RDMEGLRKILRLLSER 452

Query:   450 NRQMYHAFIKANIRNGKGVD-ELLDSM-KADGIDEDE 484
                 Y   +     NG G+  +++D+M K   ++E E
Sbjct:   453 GHISYDQLLYD--MNGAGLSWKIVDAMGKGRYVEERE 487

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2204793 AT1G02150 [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
 Identities = 156/451 (34%), Positives = 250/451 (55%)

Query:    32 LYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRK 91
             +Y  IS +  P       L+ W K G K+   EL R++++LRK KR +QALEV DWMN +
Sbjct:    69 IYKKISLMEKPELGAASVLNQWEKAGRKLTKWELCRVVKELRKYKRANQALEVYDWMNNR 128

Query:    92 GICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKA 150
             G     +  D A+QLDLIG+V G   AE +F  L ++ K  + YG+LLN YVR +  +KA
Sbjct:   129 GERFRLSASDAAIQLDLIGKVRGIPDAEEFFLQLPENFKDRRVYGSLLNAYVRAKSREKA 188

Query:   151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210
              +    M++ G AL  L +N +M LY    +Y+KV  ++ EMK K+I  D +SY I ++S
Sbjct:   189 EALLNTMRDKGYALHPLPFNVMMTLYMNLREYDKVDAMVFEMKQKDIRLDIYSYNIWLSS 248

Query:   211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK 270
              G+   +E ME++ ++M+S   I  +W+T+++ A  YIK    +KA D L+K E R+  +
Sbjct:   249 CGSLGSVEKMELVYQQMKSDVSIYPNWTTFSTMATMYIKMGETEKAEDALRKVEARITGR 308

Query:   271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVL 330
             + I Y++L+SLY SLGNK E+ R+W + K+      N  Y  ++ +L+++G+ E AEKV 
Sbjct:   309 NRIPYHYLLSLYGSLGNKKELYRVWHVYKSVVPSIPNLGYHALVSSLVRMGDIEGAEKVY 368

Query:   331 KEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA 390
             +EW    +SYD RIPN ++  Y  N  ++ AE + + +VE G   + ++W ++A G+   
Sbjct:   369 EEWLPVKSSYDPRIPNLLMNAYVKNDQLETAEGLFDHMVEMGGKPSSSTWEILAVGHTRK 428

Query:   391 GKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
                     C++ A S   EG   W+P   +++       +E  V   EA +  LR    +
Sbjct:   429 RCISEALTCLRNAFSA--EGSSNWRPKVLMLSGFFKLCEEESDVTSKEAVLELLRQSGDL 486

Query:   450 NRQMYHAFIKANIRNGKGVDELLDSMKADGI 480
               + Y A I  +        E+ D+ + D +
Sbjct:   487 EDKSYLALIDVDENRTVNNSEI-DAHETDAL 516

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0045036 "protein targeting to chloroplast" evidence=RCA

TAIR|locus:2036586 AT1G60770 [Arabidopsis thaliana (taxid:3702)]

 Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
 Identities = 145/469 (30%), Positives = 253/469 (53%)

Query:    24 TNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALE 83
             T +  +  LY+ +   G    ++  +L+ ++K    V   E+   I+ LR R  +  AL+
Sbjct:    17 TKKYIEEPLYNRLFKDGGTEVKVRQQLNQFLKGTKHVFKWEVGDTIKKLRNRGLYYPALK 76

Query:    84 VSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVR 143
             +S+ M  +G+      D A+ LDL+ +     + E+YF +L +  KT  TYG+LLNCY +
Sbjct:    77 LSEVMEERGMNKTVS-DQAIHLDLVAKAREITAGENYFVDLPETSKTELTYGSLLNCYCK 135

Query:   144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFS 203
             +  T+KA     KMKE+ I  S+++YN +M LY+KTG+ EKVP ++ E+KA+N+ PD+++
Sbjct:   136 ELLTEKAEGLLNKMKELNITPSSMSYNSLMTLYTKTGETEKVPAMIQELKAENVMPDSYT 195

Query:   204 YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA 263
             Y + + +  A +D+ G+E ++ EM     +  DW+TY++ A  Y+ A L  KA   L++ 
Sbjct:   196 YNVWMRALAATNDISGVERVIEEMNRDGRVAPDWTTYSNMASIYVDAGLSQKAEKALQEL 255

Query:   264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH 323
             E +  Q+D   Y FLI+LY  LG  +EV R+W   + A  +  N  Y+ M++ L+KL + 
Sbjct:   256 EMKNTQRDFTAYQFLITLYGRLGKLTEVYRIWRSLRLAIPKTSNVAYLNMIQVLVKLNDL 315

Query:   324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVV 383
               AE + KEW+ + ++YD RI N +I  Y   GL+Q A  + E    +G      +W + 
Sbjct:   316 PGAETLFKEWQANCSTYDIRIVNVLIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIF 375

Query:   384 AAGYFDAGKTERGFQCMKAALSVYV-EGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAA 442
                Y  +G   R  +CM  A+S+   +G  W P P+ + +++S    +  V   E  +  
Sbjct:   376 MDYYVKSGDMARALECMSKAVSIGKGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEI 435

Query:   443 LRTVIP-MNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL 490
             L+     +  +++   I+     GK    +   +K + ++ +E TK++L
Sbjct:   436 LKNGTDNIGAEIFEPLIRTYAAAGKSHPAMRRRLKMENVEVNEATKKLL 484

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141360 AT4G01990 [Arabidopsis thaliana (taxid:3702)]

 Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
 Identities = 154/465 (33%), Positives = 249/465 (53%)

Query:    31 TLYSIISPLGNPGT-RIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMN 89
             ++Y  +S LG  G  ++E  L+ +V  G  V+  +L R  +DLRK ++  +ALE+ +WM 
Sbjct:    40 SIYKKLSSLGTRGGGKMEETLNQFVMEGVPVKKHDLIRYAKDLRKFRQPQRALEIFEWME 99

Query:    90 RKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDK 149
             RK I  F   DHA++L+LI +  G  +AE+YF++L D  K   TYG+LLNCY  +++  K
Sbjct:   100 RKEIA-FTGSDHAIRLNLIAKSKGLEAAETYFNSLDDSIKNQSTYGSLLNCYCVEKEEVK 158

Query:   150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN 209
             A +HF  M ++    ++L +N++M +Y   GQ EKVP ++  MK K+I P + +Y + I 
Sbjct:   159 AKAHFENMVDLNHVSNSLPFNNLMAMYMGLGQPEKVPALVVAMKEKSITPCDITYSMWIQ 218

Query:   210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ 269
             S G+  DL+G+E +L EM+++   +  W+T+A+ A  YIK  L  KA + LK  E  +  
Sbjct:   219 SCGSLKDLDGVEKVLDEMKAEGEGIFSWNTFANLAAIYIKVGLYGKAEEALKSLENNMNP 278

Query:   270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV 329
                  Y+FLI+LY  + N SEV R+WDL K       N  Y+TML AL KL + +  +KV
Sbjct:   279 DVRDCYHFLINLYTGIANASEVYRVWDLLKKRYPNVNNSSYLTMLRALSKLDDIDGVKKV 338

Query:   330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD 389
               EWE +  +YD R+ N  I  Y    + + AEA+    ++K K     +  ++      
Sbjct:   339 FAEWESTCWTYDMRMANVAISSYLKQNMYEEAEAVFNGAMKKCKGQFSKARQLLMMHLLK 398

Query:   390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
               + +   +  +AA  V  + K W    ++I+S      +   V   E F   L    P+
Sbjct:   399 NDQADLALKHFEAA--VLDQDKNWTWSSELISSFFLHFEEAKDVDGAEEFCKTLTKWSPL 456

Query:   450 NRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL--VC 492
             + + Y   +K  +  GK   ++   ++  GI  DEE + +L  +C
Sbjct:   457 SSETYTLLMKTYLAAGKACPDMKKRLEEQGILVDEEQECLLSKIC 501

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2140220 AT4G02820 "AT4G02820" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 145/445 (32%), Positives = 250/445 (56%)

Query:    53 WVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH 112
             W + G+ VR  EL RI+R+LRK KR+  ALE+ +WM  +        D+AV LDLI ++ 
Sbjct:    84 WKEEGHSVRKYELNRIVRELRKIKRYKHALEICEWMVVQEDIKLQAGDYAVHLDLISKIR 143

Query:   113 GFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI 172
             G  SAE +F ++ D  + +    +LL+ YV+ + +DKA + F KM E G   S L YN +
Sbjct:   144 GLNSAEKFFEDMPDQMRGHAACTSLLHSYVQNKLSDKAEALFEKMGECGFLKSCLPYNHM 203

Query:   173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME-IILREMESQP 231
             + +Y   GQ+EKVP ++ E+K +   PD  +Y + + ++ + +D+EG E + L+  E + 
Sbjct:   204 LSMYISRGQFEKVPVLIKELKIRTS-PDIVTYNLWLTAFASGNDVEGAEKVYLKAKEEK- 261

Query:   232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEV 291
              +  DW TY+   + Y K + ++KA   LK+ E+ + +K+ + Y  LISL+A+LG+K  V
Sbjct:   262 -LNPDWVTYSVLTNLYAKTDNVEKARLALKEMEKLVSKKNRVAYASLISLHANLGDKDGV 320

Query:   292 LRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG 351
                W   K++ K+  + +Y++M+ A++KLGE E+A+ +  EWE    + D RIPN ++  
Sbjct:   321 NLTWKKVKSSFKKMNDAEYLSMISAVVKLGEFEQAKGLYDEWESVSGTGDARIPNLILAE 380

Query:   352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCM-KAALSVYVEG 410
             Y N   V   E   E +VEKG   + ++W ++   Y      E+   C  KA  SV    
Sbjct:   381 YMNRDEVLLGEKFYERIVEKGINPSYSTWEILTWAYLKRKDMEKVLDCFGKAIDSV---- 436

Query:   411 KGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDE 470
             K W  + +++     +L ++G+V+  E  +  L+    +N Q+Y++ ++   + G+    
Sbjct:   437 KKWTVNVRLVKGACKELEEQGNVKGAEKLMTLLQKAGYVNTQLYNSLLRTYAKAGEMALI 496

Query:   471 LLDSMKADGIDEDEETKEILVCTME 495
             + + M  D ++ DEETKE++  T +
Sbjct:   497 VEERMAKDNVELDEETKELIRLTSQ 521

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0006606 "protein import into nucleus" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2204808 AT1G02370 "AT1G02370" [Arabidopsis thaliana (taxid:3702)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 146/465 (31%), Positives = 240/465 (51%)

Query:    32 LYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRK 91
             LY  +S L   G  +   L+ ++  G  VR  +L R  + LRK +R   A E+ DWM ++
Sbjct:    73 LYKKLSMLSVTGGTVAETLNQFIMEGITVRKDDLFRCAKTLRKFRRPQHAFEIFDWMEKR 132

Query:    92 GICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQ-TYGALLNCYVRQRQTDKA 150
              +  F+  DHA+ LDLIG+  G  +AE+YF+NL    K +Q TYGAL+NCY  + + +KA
Sbjct:   133 KM-TFSVSDHAICLDLIGKTKGLEAAENYFNNLDPSAKNHQSTYGALMNCYCVELEEEKA 191

Query:   151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS 210
              +HF  M E+    ++L +N++M +Y +  Q EKVP ++  MK + I P   +Y I + S
Sbjct:   192 KAHFEIMDELNFVNNSLPFNNMMSMYMRLSQPEKVPVLVDAMKQRGISPCGVTYSIWMQS 251

Query:   211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK 270
              G+ +DL+G+E I+ EM         W+T+++ A  Y KA L +KA   LK  EE++   
Sbjct:   252 CGSLNDLDGLEKIIDEMGKDSEAKTTWNTFSNLAAIYTKAGLYEKADSALKSMEEKMNPN 311

Query:   271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVL 330
             +   ++FL+SLYA +    EV R+W+  K A     N  Y+ ML+A+ KLG+ +  +K+ 
Sbjct:   312 NRDSHHFLMSLYAGISKGPEVYRVWESLKKARPEVNNLSYLVMLQAMSKLGDLDGIKKIF 371

Query:   331 KEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA 390
              EWE    +YD R+ N  I  Y    + + AE IL+  ++K K     +  ++     + 
Sbjct:   372 TEWESKCWAYDMRLANIAINTYLKGNMYEEAEKILDGAMKKSKGPFSKARQLLMIHLLEN 431

Query:   391 GKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM 449
              K +   + ++AA+S   E K  W    ++++           V   E F   L    P+
Sbjct:   432 DKADLAMKHLEAAVSDSAENKDEWGWSSELVSLFFLHFEKAKDVDGAEDFCKILSNWKPL 491

Query:   450 NRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEIL--VC 492
             + +     IK      K   ++ + +    I+  EE +++L  VC
Sbjct:   492 DSETMTFLIKTYAAAEKTSPDMRERLSQQQIEVSEEIQDLLKTVC 536

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

TAIR|locus:2146390 AT5G27460 "AT5G27460" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 138/457 (30%), Positives = 239/457 (52%)

Query:    28 NKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDW 87
             N+ +L  I+   G P   +   L   + +G+ V + EL+ I + L +  R+  AL++ +W
Sbjct:    37 NRNSLKEILRKNG-PRRSVTSLLQERIDSGHAVSLSELRLISKRLIRSNRYDLALQMMEW 95

Query:    88 M-NRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQT----YGALLNCYV 142
             M N+K I  F+  D A++LDLI + HG    E YF  L     + +     Y  LL  YV
Sbjct:    96 MENQKDI-EFSVYDIALRLDLIIKTHGLKQGEEYFEKLLHSSVSMRVAKSAYLPLLRAYV 154

Query:   143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDN- 201
             + +   +A +   K+  +G  ++   +N++M LY  +GQYEKV  V++ MK   I P N 
Sbjct:   155 KNKMVKEAEALMEKLNGLGFLVTPHPFNEMMKLYEASGQYEKVVMVVSMMKGNKI-PRNV 213

Query:   202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK 261
              SY + +N+    S +  +E + +EM     + + WS+  + A+ YIK+   +KA  VL+
Sbjct:   214 LSYNLWMNACCEVSGVAAVETVYKEMVGDKSVEVGWSSLCTLANVYIKSGFDEKARLVLE 273

Query:   262 KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLG 321
              AE+ L + + +GY FLI+LYASLGNK  V+RLW++ K+ C R    +YI +L +L+K G
Sbjct:   274 DAEKMLNRSNRLGYFFLITLYASLGNKEGVVRLWEVSKSVCGRISCVNYICVLSSLVKTG 333

Query:   322 EHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWA 381
             + EEAE+V  EWE    +YD R+ N ++  Y  NG ++ AE++   ++E+G      +W 
Sbjct:   334 DLEEAERVFSEWEAQCFNYDVRVSNVLLGAYVRNGEIRKAESLHGCVLERGGTPNYKTWE 393

Query:   382 VVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA 441
             ++  G+      E+    M     V +    W+P   ++ +I      E  +++  A+V 
Sbjct:   394 ILMEGWVKCENMEKAIDAMHQVF-VLMRRCHWRPSHNIVMAIAEYFEKEEKIEEATAYVR 452

Query:   442 ALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKAD 478
              L  +   +  +Y   ++ +    +   ++ + MK D
Sbjct:   453 DLHRLGLASLPLYRLLLRMHEHAKRPAYDIYEMMKLD 489

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010459 AT1G28020 "AT1G28020" [Arabidopsis thaliana (taxid:3702)]

 Score = 502 (181.8 bits), Expect = 4.7e-48, P = 4.7e-48
 Identities = 141/457 (30%), Positives = 224/457 (49%)

Query:    45 RIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQ 104
             +I P L+ W + GN+V    ++ II+ LR   +  QAL+VS+WM+++ IC   P D A +
Sbjct:    51 QIIPVLEQWRQQGNQVNPSHVRVIIKKLRDSDQSLQALQVSEWMSKEKICNLIPEDFAAR 110

Query:   105 LDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQT-DKALSHFRKMKEMGIA 163
             L LI  V G   AE +F ++  + +    Y +LLN Y R  +T  KA + F+KM+++G+ 
Sbjct:   111 LHLIENVVGLEEAEKFFESIPKNARGDSVYTSLLNSYARSDKTLCKAEATFQKMRDLGLL 170

Query:   164 LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEII 223
             L  + YN +M LYS     EKV ++L EMK  ++  DN +    +  Y A  D+  ME  
Sbjct:   171 LRPVPYNAMMSLYSALKNREKVEELLLEMKDNDVEADNVTVNNVLKLYSAVCDVTEMEKF 230

Query:   224 LREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD-GIGYNFLISLY 282
             L + E    I L+W T    A  Y++A    KA  +L+  E+ ++QK     Y+ L+ LY
Sbjct:   231 LNKWEGIHGIKLEWHTTLDMAKAYLRARSSGKAMKMLRLTEQLVDQKSLKSAYDHLMKLY 290

Query:   283 ASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT 342
                GN+ EVLR+W L K+      N  Y T++ +L+K+ +   AE++ K WE     +D 
Sbjct:   291 GEAGNREEVLRVWKLYKSKIGERDNNGYRTVIRSLLKVDDIVGAEEIYKVWESLPLEFDH 350

Query:   343 RIPNAVIIGYCNNGLVQNAEAILEDLVEK----GKATTP--NSWA--VVAAGYFDAGKTE 394
             RIP  +  GY + G+ + AE ++     K     K  TP    W   +  +      K  
Sbjct:   351 RIPTMLASGYRDRGMTEKAEKLMNSKTIKDRRMNKPVTPLLEQWGDQMKPSDLKCLIKNL 410

Query:   395 RGFQCMKAALSVYVEGKGWKPDPKV-ITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM 453
             R  +    AL V  E  G K    + +    ++L    +V  +E         IP N + 
Sbjct:   411 RDSKQFSKALQVS-EWMGEKQVCNLYLEDYAARLYLTENVLGLEEAEKYFEN-IPENMKD 468

Query:   454 YHAFI-------KANIRNGKGVDELLDSMKADGIDED 483
             Y  ++       K++   G  VDE+L  M+ + +D D
Sbjct:   469 YSVYVALLSSYAKSDKNLGNMVDEILREMEENNVDPD 505

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2184807 AT5G09450 "AT5G09450" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 102/310 (32%), Positives = 173/310 (55%)

Query:    29 KTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWM 88
             K  L S I  L  P       L+ W+  GN++ + EL+ I ++LR+ +R+  ALEV++WM
Sbjct:    54 KDDLKSRIFRLRLPKRSATTVLEKWIGEGNQMTINELREISKELRRTRRYKHALEVTEWM 113

Query:    89 NRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTD 148
              +      +  D+A ++DLI +V G  +AE YF  L  D KT +TY +LL+ Y   +QT+
Sbjct:   114 VQHEESKISDADYASRIDLISKVFGIDAAERYFEGLDIDSKTAETYTSLLHAYAASKQTE 173

Query:   149 KALSHFRKMKEM-GIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC 207
             +A + F+++ E   +    +TYN++M LY   GQ EKVP+V+  +K K + PD F+Y + 
Sbjct:   174 RAEALFKRIIESDSLTFGAITYNEMMTLYMSVGQVEKVPEVIEVLKQKKVSPDIFTYNLW 233

Query:   208 INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK-KAEER 266
             ++S  A  +++ +  IL EM         W  Y      YI ++ +  A   L  +AE+ 
Sbjct:   234 LSSCAATFNIDELRKILEEMRHDASSNEGWVRYIDLTSIYINSSRVTNAESTLPVEAEKS 293

Query:   267 LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEA 326
             + Q++ I Y+FL+ L+  LGNK  + ++W   +   +   +R YI +L + + LG   EA
Sbjct:   294 ISQREWITYDFLMILHTGLGNKVMIDQIWKSLRNTNQILSSRSYICVLSSYLMLGHLREA 353

Query:   327 EKVLKEWELS 336
             E+++ +W+ S
Sbjct:   354 EEIIHQWKES 363

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84JR3	PP334_ARATH	No assigned EC number	0.5890	0.9596	0.9674	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00013428001 SubName- Full=Chromosome undetermined scaffold_478, whole genome shotgun sequence; (506 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	496
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-05
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-05
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	8e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.003

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSY 211
             +TYN ++  Y K G+ E+   +  EMK + I P+ ++Y I I+  
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 13/38 (34%), Positives = 24/38 (63%)

Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYN 170
           TY  L++ Y ++ + ++AL  F +MK+ GI  +  TY+
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYS 42

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 82/423 (19%), Positives = 150/423 (35%), Gaps = 92/423 (21%)

Query: 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE 191
            TY AL+   +  +      + +  ++  G        N ++ ++ K G       +  E
Sbjct: 124 STYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE 183

Query: 192 MKAKNIFPDNFSYRICINSYGARSDLEGMEIILREM-----ESQPHIVL--------DWS 238
           M  +N+     S+   I       +      + REM     +++P   +          S
Sbjct: 184 MPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239

Query: 239 TYAS------------AAHFYIKANLIDKAS-----DVLKKAEERLEQKDGIGYNFLISL 281
             A                 ++   LID  S     +  +   + + +K  + +N +++ 
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299

Query: 282 YASLGNKSEVLRLWDLEKTACKRYINRDYIT---MLEALMKLGEHEEAEK---------- 328
           YA  G   E L    L        ++ D  T   M+    +L   E A++          
Sbjct: 300 YALHGYSEEAL---CLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGF 356

Query: 329 ------------VLKEW---ELSGNSYDTRIP-------NAVIIGYCNNGLVQNAEAILE 366
                       +  +W   E + N +D R+P       NA+I GY N+G    A  + E
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFD-RMPRKNLISWNALIAGYGNHGRGTKAVEMFE 415

Query: 367 DLVEKGKATTPNS---WAVVAAGYFDAGKTERG---FQCMKAALSVYVEGKGWKPDPKVI 420
            ++ +G A  PN     AV++A  + +G +E+G   FQ M        E    KP     
Sbjct: 416 RMIAEGVA--PNHVTFLAVLSACRY-SGLSEQGWEIFQSMS-------ENHRIKPRAMHY 465

Query: 421 TSILSKLGDEGSVQDVEAFV--AALRTVIPMNRQMYHAF-IKANIRNGKGVDELLDSMKA 477
             ++  LG EG + +  A +  A  +  + M   +  A  I  N+  G+   E L  M  
Sbjct: 466 ACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGP 525

Query: 478 DGI 480
           + +
Sbjct: 526 EKL 528

Length = 697

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 21/30 (70%)

Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGI 162
           TY +L++ Y +  + ++AL  F++MKE G+
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 51/200 (25%), Positives = 76/200 (38%), Gaps = 40/200 (20%)

Query: 81  ALEVSDWMNRKGIC---VF--APCD---HAVQLDL------IGRVHGF-LSAESYFS--- 122
           AL + D M +KG+    VF  A  D   HA  LD         R  G  L   SY S   
Sbjct: 633 ALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692

Query: 123 ---NLKDDEK---------------TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL 164
              N K+ +K               T  T  AL+       Q  KAL    +MK +G+  
Sbjct: 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752

Query: 165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGAR---SDLEGME 221
           +T+TY+ ++    +    +   D+L++ K   I P N     CI     R         E
Sbjct: 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKP-NLVMCRCITGLCLRRFEKACALGE 811

Query: 222 IILREMESQPHIVLDWSTYA 241
            ++     +P I   W+++A
Sbjct: 812 PVVSFDSGRPQIENKWTSWA 831

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 8e-04
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 168 TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD 200
           TYN ++    K G+ E+  ++  EMK + I PD
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALST 166
           TY  L++   +  + ++AL  F++MKE GI    
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 168 TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP 199
           TYN ++   +K G  +    VL EMKA  + P
Sbjct: 3   TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 39/169 (23%), Positives = 72/169 (42%), Gaps = 8/169 (4%)

Query: 128 EKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD 187
           EK   ++  LL  YV   +   A+  F +M E G+    +T+  ++C  S++G   +  +
Sbjct: 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610

Query: 188 VLTEMKAK-NIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHF 246
               M+ K +I P+   Y   ++  G    L      + +M   P   + W    +A   
Sbjct: 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAV-WGALLNACRI 669

Query: 247 YIKANLIDKASDVLKKAEERLEQKDGIGYNFLI-SLYASLGNKSEVLRL 294
           +    L + A+  + +    L+    +GY  L+ +LYA  G   EV R+
Sbjct: 670 HRHVELGELAAQHIFE----LDPNS-VGYYILLCNLYADAGKWDEVARV 713

Length = 857

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	496
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.97
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.93
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.91
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.9
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.9
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.89
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.86
PRK14574	822	hmsH outer membrane protein; Provisional	99.85
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.83
KOG2003	840	consensus TPR repeat-containing protein [General f	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.81
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.79
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.79
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.76
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.74
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.74
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.73
KOG2076	895	consensus RNA polymerase III transcription factor	99.71
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.7
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.7
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.68
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.67
KOG2076	895	consensus RNA polymerase III transcription factor	99.67
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.67
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.66
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.66
KOG1126	638	consensus DNA-binding cell division cycle control	99.65
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.65
KOG2003	840	consensus TPR repeat-containing protein [General f	99.63
KOG1126	638	consensus DNA-binding cell division cycle control	99.63
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.62
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.61
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.59
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.56
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.55
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.5
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.47
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.47
PRK12370	553	invasion protein regulator; Provisional	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
PRK12370	553	invasion protein regulator; Provisional	99.44
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.44
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.44
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.43
KOG1129	478	consensus TPR repeat-containing protein [General f	99.43
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.42
PF13041	50	PPR_2: PPR repeat family	99.42
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.42
KOG1129	478	consensus TPR repeat-containing protein [General f	99.4
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.4
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.39
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.38
PF13041	50	PPR_2: PPR repeat family	99.38
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.38
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.35
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.32
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.29
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.26
PRK11189	296	lipoprotein NlpI; Provisional	99.25
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.23
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.23
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.22
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.21
PRK11189	296	lipoprotein NlpI; Provisional	99.19
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.18
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.18
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.15
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.15
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.14
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.12
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.07
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.06
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.05
PRK04841	903	transcriptional regulator MalT; Provisional	99.04
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.04
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.02
KOG1125	579	consensus TPR repeat-containing protein [General f	98.98
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.98
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.96
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.94
PRK04841	903	transcriptional regulator MalT; Provisional	98.92
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.92
KOG1125	579	consensus TPR repeat-containing protein [General f	98.88
PLN02789	320	farnesyltranstransferase	98.87
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.85
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.84
PLN02789	320	farnesyltranstransferase	98.83
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.8
PF12854	34	PPR_1: PPR repeat	98.78
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.77
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.76
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.73
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.73
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.71
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.69
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.69
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.68
PF12854	34	PPR_1: PPR repeat	98.68
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.68
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.67
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.67
PRK15359	144	type III secretion system chaperone protein SscB;	98.67
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.66
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.65
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.65
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.64
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.64
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.64
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.63
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.6
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.59
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.57
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.57
PRK15359	144	type III secretion system chaperone protein SscB;	98.55
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.54
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.53
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.51
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.4
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.39
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.35
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.32
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.32
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.25
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.19
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.15
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.13
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.12
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.11
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.09
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.09
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.04
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.99
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.95
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.94
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.94
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.94
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.92
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.92
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.9
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.9
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.86
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.85
KOG0553	304	consensus TPR repeat-containing protein [General f	97.85
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.82
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.81
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.77
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.75
KOG0553	304	consensus TPR repeat-containing protein [General f	97.74
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.71
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.7
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.68
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.67
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.66
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.66
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.63
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.63
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.63
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.63
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.61
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.61
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.58
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.54
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.53
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.51
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.48
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.47
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.45
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.44
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.42
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.38
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.37
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.37
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.37
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.36
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.35
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.35
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.34
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.34
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.32
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.31
PRK10803	263	tol-pal system protein YbgF; Provisional	97.29
PF12688	120	TPR_5: Tetratrico peptide repeat	97.29
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.21
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.2
PF12688	120	TPR_5: Tetratrico peptide repeat	97.19
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.18
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.14
PF13371	73	TPR_9: Tetratricopeptide repeat	97.09
PRK10803	263	tol-pal system protein YbgF; Provisional	97.03
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.02
KOG3941	406	consensus Intermediate in Toll signal transduction	96.91
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.84
KOG1585	308	consensus Protein required for fusion of vesicles	96.79
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.76
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.71
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.61
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.6
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.6
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.51
PF13371	73	TPR_9: Tetratricopeptide repeat	96.48
PRK11906	458	transcriptional regulator; Provisional	96.47
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.45
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.44
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.41
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.39
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.39
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.36
PRK15331	165	chaperone protein SicA; Provisional	96.36
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.34
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.33
PRK15331	165	chaperone protein SicA; Provisional	96.33
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.32
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.15
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	96.11
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.02
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.02
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.99
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.97
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.92
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.83
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.77
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.73
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.65
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.65
KOG3941	406	consensus Intermediate in Toll signal transduction	95.63
PF13428	44	TPR_14: Tetratricopeptide repeat	95.63
COG1747	711	Uncharacterized N-terminal domain of the transcrip	95.59
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.58
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.54
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.48
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.42
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.42
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.39
PF13512	142	TPR_18: Tetratricopeptide repeat	95.36
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.29
KOG4555	175	consensus TPR repeat-containing protein [Function	95.25
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.22
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.2
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.18
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.06
KOG4555	175	consensus TPR repeat-containing protein [Function	95.04
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	94.99
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.96
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.89
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.78
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.68
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.67
PF13512	142	TPR_18: Tetratricopeptide repeat	94.59
PF13428	44	TPR_14: Tetratricopeptide repeat	94.54
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.38
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.36
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	94.3
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	94.18
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	94.07
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.96
KOG1258	577	consensus mRNA processing protein [RNA processing	93.93
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.89
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.88
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	93.82
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	93.78
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.73
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.71
PF13431	34	TPR_17: Tetratricopeptide repeat	93.69
KOG1258	577	consensus mRNA processing protein [RNA processing	93.68
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.45
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.44
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.4
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.31
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.21
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.18
PRK11906	458	transcriptional regulator; Provisional	92.89
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.86
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.54
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.38
PF13431	34	TPR_17: Tetratricopeptide repeat	92.29
PRK09687	280	putative lyase; Provisional	92.28
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	91.72
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	91.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	91.48
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.23
PF13929	292	mRNA_stabil: mRNA stabilisation	90.94
KOG1585	308	consensus Protein required for fusion of vesicles	90.69
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.61
COG3947	361	Response regulator containing CheY-like receiver a	90.45
KOG4570	418	consensus Uncharacterized conserved protein [Funct	90.44
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.35
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.2
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	89.97
PF13929	292	mRNA_stabil: mRNA stabilisation	89.94
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.83
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	89.75
KOG1550	552	consensus Extracellular protein SEL-1 and related	89.43
KOG1586	288	consensus Protein required for fusion of vesicles	89.19
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	88.84
KOG4570	418	consensus Uncharacterized conserved protein [Funct	88.69
KOG4648	536	consensus Uncharacterized conserved protein, conta	88.45
KOG1586	288	consensus Protein required for fusion of vesicles	88.33
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.28
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	88.21
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	88.2
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	88.1
PF13762	145	MNE1: Mitochondrial splicing apparatus component	87.5
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	87.37
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.66
KOG2471	696	consensus TPR repeat-containing protein [General f	86.64
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	86.56
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.49
KOG4077	149	consensus Cytochrome c oxidase, subunit Va/COX6 [E	86.02
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	85.78
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.58
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.52
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	84.85
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	84.8
COG1747	711	Uncharacterized N-terminal domain of the transcrip	84.69
KOG4234	271	consensus TPR repeat-containing protein [General f	84.57
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.52
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	84.47
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	84.4
PRK09687	280	putative lyase; Provisional	83.57
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	83.38
COG4455	273	ImpE Protein of avirulence locus involved in tempe	83.35
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.76
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	81.57
COG3947	361	Response regulator containing CheY-like receiver a	81.34
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.0
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	80.82
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	80.69
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	80.49
KOG4648	536	consensus Uncharacterized conserved protein, conta	80.49
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	80.36
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	80.11

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=6.3e-67  Score=523.07  Aligned_cols=462  Identities=13%  Similarity=0.142  Sum_probs=428.6

Q ss_pred             cccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCC-CCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchh
Q 010994           23 YTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGN-KVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDH  101 (496)
Q Consensus        23 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  101 (496)
                      .++...+..++..+.+.|+.. .+..+++.|.+.+. +++...++.++..|.+.|.+++|+.+|+.|..     ++..++
T Consensus       367 ~~~~~~~~~~y~~l~r~G~l~-eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Ty  440 (1060)
T PLN03218        367 KRKSPEYIDAYNRLLRDGRIK-DCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTF  440 (1060)
T ss_pred             CCCchHHHHHHHHHHHCcCHH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHH
Confidence            455667778888888877744 45568999988875 57788888999999999999999999999875     467888


Q ss_pred             hhhhhHHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 010994          102 AVQLDLIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT  179 (496)
Q Consensus       102 ~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  179 (496)
                      ..++..|++.|+++.|.++|+.|.+.+  ||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.
T Consensus       441 n~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~  520 (1060)
T PLN03218        441 NMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARA  520 (1060)
T ss_pred             HHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            899999999999999999999998874  799999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010994          180 GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES-QPHIVLDWSTYASAAHFYIKANLIDKASD  258 (496)
Q Consensus       180 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~  258 (496)
                      |++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. ..++.||..+|+.+|.+|++.|++++|.+
T Consensus       521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e  600 (1060)
T PLN03218        521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE  600 (1060)
T ss_pred             cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999972 26788999999999999999999999999


Q ss_pred             HHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010994          259 VLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN  338 (496)
Q Consensus       259 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  338 (496)
                      +|++|.+.++.|+..+|+.+|.+|++.|++++|.++|++|...+..||..+|+.++.+|++.|++++|.+++++|.+.|+
T Consensus       601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~  680 (1060)
T PLN03218        601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI  680 (1060)
T ss_pred             HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 010994          339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK  418 (496)
Q Consensus       339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~  418 (496)
                      .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..     .|+.||..
T Consensus       681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~-----~Gi~Pd~~  755 (1060)
T PLN03218        681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-----LGLCPNTI  755 (1060)
T ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-----cCCCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998     89999999


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHh----C-------------------C--CcHHHHH
Q 010994          419 VITSILSKLGDEGSVQDVEAFVAALRT-VIPMNRQMYHAFIKANIR----N-------------------G--KGVDELL  472 (496)
Q Consensus       419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~----~-------------------g--~~a~~~~  472 (496)
                      ||+.++.+|++.|++++|.++++.|.+ +..||..+|++++..|.+    .                   +  ++|..+|
T Consensus       756 Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf  835 (1060)
T PLN03218        756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVY  835 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHH
Confidence            999999999999999999999998877 689999999999876442    1                   1  4689999


Q ss_pred             HHHHhCCCCCChhHHHHHHhhhc
Q 010994          473 DSMKADGIDEDEETKEILVCTME  495 (496)
Q Consensus       473 ~~m~~~g~~p~~~t~~~l~~~~~  495 (496)
                      ++|++.|+.||..||..++.+++
T Consensus       836 ~eM~~~Gi~Pd~~T~~~vL~cl~  858 (1060)
T PLN03218        836 RETISAGTLPTMEVLSQVLGCLQ  858 (1060)
T ss_pred             HHHHHCCCCCCHHHHHHHHHHhc
Confidence            99999999999999999996654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=7.7e-66  Score=515.28  Aligned_cols=430  Identities=15%  Similarity=0.193  Sum_probs=413.7

Q ss_pred             CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHH
Q 010994           57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA  136 (496)
Q Consensus        57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  136 (496)
                      ...++...|..++..|++.|++++|+++|++|.+.+..+++...+..++..|.+.|..++|..+|+.|..  ||..+|+.
T Consensus       365 ~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--pd~~Tyn~  442 (1060)
T PLN03218        365 SGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--PTLSTFNM  442 (1060)
T ss_pred             CCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--CCHHHHHH
Confidence            4556788899999999999999999999999999986666666677788999999999999999999986  99999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994          137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD  216 (496)
Q Consensus       137 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~  216 (496)
                      ++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--hcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994          217 LEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEE--RLEQKDGIGYNFLISLYASLGNKSEVLRL  294 (496)
Q Consensus       217 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  294 (496)
                      +++|.++|++|. ..++.||..+|+.+|.+|++.|++++|.++|++|..  .++.||..+|+.++.+|++.|++++|.++
T Consensus       523 ~eeAl~lf~~M~-~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el  601 (1060)
T PLN03218        523 VAKAFGAYGIMR-SKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV  601 (1060)
T ss_pred             HHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            999999999999 899999999999999999999999999999999976  57889999999999999999999999999


Q ss_pred             HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994          295 WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA  374 (496)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (496)
                      |+.|...+..|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.
T Consensus       602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~  681 (1060)
T PLN03218        602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK  681 (1060)
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-cCCCCHHH
Q 010994          375 TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-VIPMNRQM  453 (496)
Q Consensus       375 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~  453 (496)
                      ||..+|+.+|.+|++.|++++|.++|++|..     .|+.||..+|+.++.+|++.|++++|.++|++|.. +..||..+
T Consensus       682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~-----~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T  756 (1060)
T PLN03218        682 LGTVSYSSLMGACSNAKNWKKALELYEDIKS-----IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT  756 (1060)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence            9999999999999999999999999999998     89999999999999999999999999999998876 68999999


Q ss_pred             HHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhhh
Q 010994          454 YHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCTM  494 (496)
Q Consensus       454 ~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~  494 (496)
                      |+.++.+|++.|  ++|.+++++|.+.|+.||..+|+.|+..|
T Consensus       757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc  799 (1060)
T PLN03218        757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC  799 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            999999999999  89999999999999999999999998643

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.6e-63  Score=504.70  Aligned_cols=464  Identities=15%  Similarity=0.123  Sum_probs=384.9

Q ss_pred             cccccchhhhhhhhhhcccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 010994            7 LSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSD   86 (496)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~   86 (496)
                      +..+.++|..+.+.+..++....+.|+..+++.|+... ...+++.|    ..||..+|+.+|.+|++.|++++|+++|+
T Consensus       102 ~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~-A~~~f~~m----~~~d~~~~n~li~~~~~~g~~~~A~~~f~  176 (857)
T PLN03077        102 VEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVH-AWYVFGKM----PERDLFSWNVLVGGYAKAGYFDEALCLYH  176 (857)
T ss_pred             HHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHH-HHHHHhcC----CCCCeeEHHHHHHHHHhCCCHHHHHHHHH
Confidence            34455666666666666666666666666666655322 22344443    24556666666666666666666666666


Q ss_pred             HHHhCCC----------------------------------CCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHH
Q 010994           87 WMNRKGI----------------------------------CVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQ  132 (496)
Q Consensus        87 ~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~  132 (496)
                      .|...|.                                  ..+++..++.++..|++.|+++.|..+|++|..  ||..
T Consensus       177 ~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~--~d~~  254 (857)
T PLN03077        177 RMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR--RDCI  254 (857)
T ss_pred             HHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC--CCcc
Confidence            6655441                                  223445566678888999999999999999875  7888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010994          133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYG  212 (496)
Q Consensus       133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  212 (496)
                      +||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.++.+|+
T Consensus       255 s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~  334 (857)
T PLN03077        255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL  334 (857)
T ss_pred             hhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 010994          213 ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL  292 (496)
Q Consensus       213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  292 (496)
                      +.|++++|.++|++|. .    ||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.
T Consensus       335 k~g~~~~A~~vf~~m~-~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~  409 (857)
T PLN03077        335 SLGSWGEAEKVFSRME-T----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGV  409 (857)
T ss_pred             hcCCHHHHHHHHhhCC-C----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHH
Confidence            9999999999999996 3    6778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994          293 RLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG  372 (496)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (496)
                      ++++.+...+..++..+|+.++.+|++.|++++|.++|++|.+    +|..+|+.++.+|++.|+.++|..+|++|.. +
T Consensus       410 ~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~  484 (857)
T PLN03077        410 KLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-T  484 (857)
T ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-C
Confidence            9999999998889999999999999999999999999998854    5888999999999999999999999999986 5


Q ss_pred             CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 010994          373 KATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQ  452 (496)
Q Consensus       373 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  452 (496)
                      +.||..||+.++.+|++.|+.+.+.+++..+.+     .|+.+|..++++++.+|+++|++++|.++|+.+    ++|..
T Consensus       485 ~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~-----~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~  555 (857)
T PLN03077        485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLR-----TGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVV  555 (857)
T ss_pred             CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHH-----hCCCccceechHHHHHHHHcCCHHHHHHHHHhc----CCChh
Confidence            889999999999999999999999999888887     788888888888888888888888888888776    57888


Q ss_pred             HHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhhhcC
Q 010994          453 MYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCTMEK  496 (496)
Q Consensus       453 ~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~k  496 (496)
                      +||.+|.+|++.|  ++|+++|++|.+.|+.||..||+.++.+|.+
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~  601 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSR  601 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhh
Confidence            8888888888888  7888888888888888888888888887753

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.1e-63  Score=505.07  Aligned_cols=460  Identities=16%  Similarity=0.177  Sum_probs=426.4

Q ss_pred             cccccchhhhhhhhhhcccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHH
Q 010994            7 LSTNTQIHNAVFSRFYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSD   86 (496)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~   86 (496)
                      +..++++|..+.+.|+.|++.+++.|+..+++.|+.. .+..+++.|    ..+|..+|+.+|.+|++.|++++|+++|+
T Consensus       203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~-~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~  277 (857)
T PLN03077        203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVV-SARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFF  277 (857)
T ss_pred             hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHH-HHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence            4567788888888899999999999999999888744 344566666    46788999999999999999999999999


Q ss_pred             HHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010994           87 WMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL  164 (496)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  164 (496)
                      +|.+.+ ..++..++..++..|++.|+.+.|.+++..+...+  ||..+||+||.+|++.|++++|.++|++|..    |
T Consensus       278 ~M~~~g-~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~  352 (857)
T PLN03077        278 TMRELS-VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----K  352 (857)
T ss_pred             HHHHcC-CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----C
Confidence            999988 55677788888999999999999999999988764  7999999999999999999999999999964    5


Q ss_pred             ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010994          165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAA  244 (496)
Q Consensus       165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  244 (496)
                      |..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+. +.|+.|+..+|+.|+
T Consensus       353 d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~-~~g~~~~~~~~n~Li  431 (857)
T PLN03077        353 DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE-RKGLISYVVVANALI  431 (857)
T ss_pred             CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH-HhCCCcchHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999 889999999999999


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHH
Q 010994          245 HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHE  324 (496)
Q Consensus       245 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  324 (496)
                      .+|++.|++++|.++|++|.    .+|..+|+.++.+|++.|+.++|+.+|++|... ..||..||+.++.+|++.|+++
T Consensus       432 ~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~-~~pd~~t~~~lL~a~~~~g~l~  506 (857)
T PLN03077        432 EMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALM  506 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC-CCCCHhHHHHHHHHHhhhchHH
Confidence            99999999999999999975    378899999999999999999999999999864 6799999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          325 EAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL  404 (496)
Q Consensus       325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  404 (496)
                      .+.+++..+.+.|+.+|..++++++.+|++.|++++|.++|+.+     .||..+||++|.+|++.|+.++|+++|++|.
T Consensus       507 ~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~  581 (857)
T PLN03077        507 CGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMV  581 (857)
T ss_pred             HhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999987     4799999999999999999999999999999


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCC
Q 010994          405 SVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT--VIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGI  480 (496)
Q Consensus       405 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~  480 (496)
                      +     .|+.||..||+.++.+|++.|++++|.++|+.|.+  +..|+..+|+.++++|++.|  ++|.+++++|.   +
T Consensus       582 ~-----~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~  653 (857)
T PLN03077        582 E-----SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---I  653 (857)
T ss_pred             H-----cCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---C
Confidence            8     89999999999999999999999999999999984  58899999999999999999  89999999994   8


Q ss_pred             CCChhHHHHHHhhhc
Q 010994          481 DEDEETKEILVCTME  495 (496)
Q Consensus       481 ~p~~~t~~~l~~~~~  495 (496)
                      .||..+|+.|+.+|.
T Consensus       654 ~pd~~~~~aLl~ac~  668 (857)
T PLN03077        654 TPDPAVWGALLNACR  668 (857)
T ss_pred             CCCHHHHHHHHHHHH
Confidence            899999999999874

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.2e-60  Score=475.88  Aligned_cols=451  Identities=14%  Similarity=0.147  Sum_probs=412.1

Q ss_pred             ccCCCcccHHhhhccCCCCCCCcHHHHHHHHHc-CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhh
Q 010994           24 TNRINKTTLYSIISPLGNPGTRIEPELDNWVKN-GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHA  102 (496)
Q Consensus        24 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  102 (496)
                      .+..+++.++..+.+.++...+ ..+++.|... +..|+..+|+.++.+|.+.++++.|.+++..|.+.| ..+++.+++
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~A-l~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n  162 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREA-LELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMN  162 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHH-HHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHH
Confidence            3455788888999988876544 4477777665 478999999999999999999999999999999998 556788889


Q ss_pred             hhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC
Q 010994          103 VQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY  182 (496)
Q Consensus       103 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~  182 (496)
                      .++..|++.|+++.|.++|++|.+  ||..+||++|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.|+.
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~~--~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~  240 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMPE--RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA  240 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCCC--CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence            999999999999999999999985  899999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994          183 EKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK  262 (496)
Q Consensus       183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  262 (496)
                      +.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .    +|..+||.+|.+|++.|++++|.++|++
T Consensus       241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~----~~~vt~n~li~~y~~~g~~~eA~~lf~~  315 (697)
T PLN03081        241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-E----KTTVAWNSMLAGYALHGYSEEALCLYYE  315 (697)
T ss_pred             HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-C----CChhHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999996 3    6788999999999999999999999999


Q ss_pred             HHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994          263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT  342 (496)
Q Consensus       263 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  342 (496)
                      |.+.|+.||..||+.++.+|++.|++++|.+++..|.+.+..++..+|+.++.+|++.|++++|.++|++|.    .||.
T Consensus       316 M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~  391 (697)
T PLN03081        316 MRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNL  391 (697)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCe
Confidence            999999999999999999999999999999999999999988999999999999999999999999999985    3689


Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      .+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+    +.|+.|+..+|+.
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~----~~g~~p~~~~y~~  467 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE----NHRIKPRAMHYAC  467 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH----hcCCCCCccchHh
Confidence            999999999999999999999999999999999999999999999999999999999999986    3589999999999


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCC-hhHHHHHHhhhc
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDED-EETKEILVCTME  495 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~-~~t~~~l~~~~~  495 (496)
                      ++.+|++.|++++|.++++.+.  ..|+..+|++|+.+|...|  +.|..+++++.+  +.|+ ..+|..|+..+.
T Consensus       468 li~~l~r~G~~~eA~~~~~~~~--~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~  539 (697)
T PLN03081        468 MIELLGREGLLDEAYAMIRRAP--FKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYN  539 (697)
T ss_pred             HHHHHHhcCCHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHH
Confidence            9999999999999999988763  5789999999999999988  788888888864  5675 457888877654

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.1e-60  Score=472.86  Aligned_cols=451  Identities=13%  Similarity=0.130  Sum_probs=421.8

Q ss_pred             cccchhhhhhhh-hhcccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHH
Q 010994            9 TNTQIHNAVFSR-FYYTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDW   87 (496)
Q Consensus         9 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~   87 (496)
                      .+.++...|... ++.|+..+++.++..+.+.+.. .....++..+.+.|..||..+|+.|+..|++.|++++|.++|+.
T Consensus       105 ~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~-~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~  183 (697)
T PLN03081        105 EALELFEILEAGCPFTLPASTYDALVEACIALKSI-RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDE  183 (697)
T ss_pred             HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhc
Confidence            344455556554 4789999999999999998764 34566888898999999999999999999999999999999999


Q ss_pred             HHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010994           88 MNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS  165 (496)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  165 (496)
                      |.+.     +..+++.++..|++.|++++|..+|++|.+.+  ||..+|+.++.++++.|+.+.+.+++..+.+.|+.||
T Consensus       184 m~~~-----~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d  258 (697)
T PLN03081        184 MPER-----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD  258 (697)
T ss_pred             CCCC-----CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCcc
Confidence            9763     57789999999999999999999999998764  7899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHH
Q 010994          166 TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAH  245 (496)
Q Consensus       166 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~  245 (496)
                      ..+|+.|+.+|++.|++++|.++|++|.    .+|..+|+.+|.+|++.|+.++|.++|++|. ..|+.||..||+.++.
T Consensus       259 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~-~~g~~pd~~t~~~ll~  333 (697)
T PLN03081        259 TFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMR-DSGVSIDQFTFSIMIR  333 (697)
T ss_pred             ceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHH
Confidence            9999999999999999999999999995    4689999999999999999999999999998 8899999999999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 010994          246 FYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEE  325 (496)
Q Consensus       246 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  325 (496)
                      +|++.|++++|.+++..|.+.|..||..+|+.++.+|++.|++++|.++|+.|..    +|..+|+.+|.+|++.|+.++
T Consensus       334 a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~  409 (697)
T PLN03081        334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTK  409 (697)
T ss_pred             HHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999999999999998853    788999999999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh-cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          326 AEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE-KGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL  404 (496)
Q Consensus       326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  404 (496)
                      |.++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|.+++++| 
T Consensus       410 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-  488 (697)
T PLN03081        410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-  488 (697)
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-
Confidence            999999999999999999999999999999999999999999986 699999999999999999999999999999874 


Q ss_pred             HhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCC
Q 010994          405 SVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDE  482 (496)
Q Consensus       405 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p  482 (496)
                             ++.|+..+|++++.+|...|+++.|..+++++.+..|.+..+|..|+..|++.|  ++|.+++++|++.|+..
T Consensus       489 -------~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k  561 (697)
T PLN03081        489 -------PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM  561 (697)
T ss_pred             -------CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence                   689999999999999999999999999999998777778899999999999999  89999999999999863

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=5.5e-28  Score=252.85  Aligned_cols=426  Identities=11%  Similarity=-0.005  Sum_probs=330.9

Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC
Q 010994           49 ELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE  128 (496)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  128 (496)
                      +++.+.. ..+.+...+..+...+...|++++|.+.|+.+.+..  +..+.....+...+...|++++|...|+.+....
T Consensus       453 ~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  529 (899)
T TIGR02917       453 AAKKLEK-KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID  529 (899)
T ss_pred             HHHHHHH-hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            4444432 345566778888888888888888888888887754  2344555556677778888888888888887766


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH
Q 010994          129 K-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC  207 (496)
Q Consensus       129 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  207 (496)
                      | +..++..+...+.+.|++++|...++++.+.+ +.+...+..++..+...|++++|..+++.+.+. .+.+...|..+
T Consensus       530 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l  607 (899)
T TIGR02917       530 PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAWLML  607 (899)
T ss_pred             cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHHHHH
Confidence            6 57778888888888888888888888887664 336677778888888888888888888888765 34466778888


Q ss_pred             HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCC
Q 010994          208 INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN  287 (496)
Q Consensus       208 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~  287 (496)
                      ..++...|++++|...|+++. +.+. .+...+..+..++...|++++|...|+++.+..+ .+..++..++..+...|+
T Consensus       608 ~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~  684 (899)
T TIGR02917       608 GRAQLAAGDLNKAVSSFKKLL-ALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGLAQLLLAAKR  684 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCC
Confidence            888888888888888888887 4443 4566777788888888888888888888876543 556778888888888888


Q ss_pred             HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHH
Q 010994          288 KSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED  367 (496)
Q Consensus       288 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  367 (496)
                      +++|.++++.+....+ .+...+..+...+...|++++|...++.+...+  |+..++..+...+.+.|++++|.+.+++
T Consensus       685 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~  761 (899)
T TIGR02917       685 TESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEA  761 (899)
T ss_pred             HHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888888887777655 566777788888888899999999888888764  4446777788888888999999988888


Q ss_pred             HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 010994          368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI  447 (496)
Q Consensus       368 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  447 (496)
                      +.+..+. +...+..+...|...|++++|.+.|+++++      ..+++...+..+...+...|+ ++|...++++....
T Consensus       762 ~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       762 WLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVK------KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA  833 (899)
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence            8876544 777888888888889999999999999887      334567788888888888888 77888888887777


Q ss_pred             CCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhhh
Q 010994          448 PMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCTM  494 (496)
Q Consensus       448 ~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~  494 (496)
                      |.++..+..+..++...|  ++|..+++++.+.+-. |..++..+..++
T Consensus       834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~  881 (899)
T TIGR02917       834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALAL  881 (899)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHH
Confidence            777888888888888888  7899999998886543 666666655544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.97  E-value=2.1e-27  Score=248.50  Aligned_cols=433  Identities=13%  Similarity=0.101  Sum_probs=367.2

Q ss_pred             cCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhh
Q 010994           25 NRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQ  104 (496)
Q Consensus        25 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  104 (496)
                      ++..+..+...+...++... ....++...+ ..+.+...+..+...+...|++++|.+.|+.+.+..+  .+...+..+
T Consensus       464 ~~~~~~~l~~~~~~~~~~~~-A~~~~~~a~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l  539 (899)
T TIGR02917       464 NASLHNLLGAIYLGKGDLAK-AREAFEKALS-IEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP--KNLRAILAL  539 (899)
T ss_pred             CcHHHHHHHHHHHhCCCHHH-HHHHHHHHHh-hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHH
Confidence            34445555555555555333 3334444433 3345667788899999999999999999999998752  455667777


Q ss_pred             hhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994          105 LDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE  183 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  183 (496)
                      ...+.+.|+.++|..+|+++....| +...+..++..+.+.|++++|..+++.+.+.. +.+...|..+..++...|+++
T Consensus       540 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  618 (899)
T TIGR02917       540 AGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLN  618 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence            8888899999999999999988776 57788899999999999999999999998763 457889999999999999999


Q ss_pred             cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      +|...|+++.+.. +.+...+..+..++...|++++|...++++. .... .+..++..++..+...|++++|..+++.+
T Consensus       619 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  695 (899)
T TIGR02917       619 KAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRAL-ELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSL  695 (899)
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999998763 3356778889999999999999999999998 5543 56888999999999999999999999999


Q ss_pred             HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 010994          264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR  343 (496)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  343 (496)
                      ....+ .+...+..+...+...|++++|...|+.+....+  +..++..++.++.+.|++++|...++.+.+.. +.+..
T Consensus       696 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~  771 (899)
T TIGR02917       696 QKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAV  771 (899)
T ss_pred             HhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            88764 6777888999999999999999999998887764  44778889999999999999999999998874 44778


Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI  423 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l  423 (496)
                      .+..+...|...|++++|...|+++.+.++. +...++.+...+...|+ ++|+..++++..      -.+-+..++..+
T Consensus       772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~------~~~~~~~~~~~~  843 (899)
T TIGR02917       772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALK------LAPNIPAILDTL  843 (899)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHh------hCCCCcHHHHHH
Confidence            8899999999999999999999999988654 88899999999999999 889999999987      223345677788


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994          424 LSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA  477 (496)
Q Consensus       424 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~  477 (496)
                      ...+...|++++|..+++++.+..|.++.++..++.++.+.|  ++|.+++++|.+
T Consensus       844 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       844 GWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence            889999999999999999999888889999999999999999  899999999863

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.93  E-value=1.1e-21  Score=176.14  Aligned_cols=402  Identities=13%  Similarity=0.096  Sum_probs=308.3

Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHhCCCC--------------------------------CCCcchhhhhhhHHHhhc
Q 010994           65 LQRIIRDLRKRKRFSQALEVSDWMNRKGIC--------------------------------VFAPCDHAVQLDLIGRVH  112 (496)
Q Consensus        65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~  112 (496)
                      ...|.....+.|++++|.+.-...-+.+..                                +.-.+.+..+...+...|
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence            456667777888888888877666655420                                011223333445555667


Q ss_pred             CHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhH-HHHHHHHHHhcCCCCcHHHHHH
Q 010994          113 GFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLT-YNDIMCLYSKTGQYEKVPDVLT  190 (496)
Q Consensus       113 ~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~  190 (496)
                      +++.|+..++.+.+..|+ +..|..+..++...|+.+.|...|.+..+.  .|+... ...+....-..|+.++|...|.
T Consensus       131 ~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYl  208 (966)
T KOG4626|consen  131 QLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYL  208 (966)
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHH
Confidence            777777777777766663 666777777777777777777777666664  333322 2233334445667777777777


Q ss_pred             HHHHCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 010994          191 EMKAKNIFPD-NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ  269 (496)
Q Consensus       191 ~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  269 (496)
                      +.++.  .|. .+.|..|...+-..|+...|++.|++.. +.++ --...|-.|...|...+.+++|...|.+.....+ 
T Consensus       209 kAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv-kldP-~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-  283 (966)
T KOG4626|consen  209 KAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV-KLDP-NFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-  283 (966)
T ss_pred             HHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh-cCCC-cchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-
Confidence            66654  232 3557777778888899999999998887 5443 3356788899999999999999999998776432 


Q ss_pred             CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994          270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (496)
                      ....++..+...|...|..+.|+..|++..+..+ .-...|+.+..++-..|++.+|.+.+.+...... ......+.|.
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~hadam~NLg  361 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHADAMNNLG  361 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHHHHHHHH
Confidence            4567888888899999999999999998888765 4457899999999999999999999999988743 2456778899


Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHh
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLG  428 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~  428 (496)
                      ..|...|.++.|..+|....+-.+. =...++.|...|-++|++++|+..|++++.       ++|+- ..++.+...|.
T Consensus       362 ni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-------I~P~fAda~~NmGnt~k  433 (966)
T KOG4626|consen  362 NIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR-------IKPTFADALSNMGNTYK  433 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh-------cCchHHHHHHhcchHHH
Confidence            9999999999999999998885332 345789999999999999999999999986       88986 68999999999


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChh
Q 010994          429 DEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEE  485 (496)
Q Consensus       429 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~  485 (496)
                      ..|+...|.+.+.+...-.|.-...++.|...|...|  .+|++-+++..+  ++||..
T Consensus       434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfp  490 (966)
T KOG4626|consen  434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFP  490 (966)
T ss_pred             HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCc
Confidence            9999999999999888766666788999999999999  899999999877  677764

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=2.2e-22  Score=188.96  Aligned_cols=288  Identities=13%  Similarity=0.093  Sum_probs=123.3

Q ss_pred             hcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhHHHHHHHHHHhcCCCCcHH
Q 010994          111 VHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS---TLTYNDIMCLYSKTGQYEKVP  186 (496)
Q Consensus       111 ~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~~~~~~a~  186 (496)
                      .|++++|...|.++.+.+| +..++..+...+...|++++|..+++.+...+..++   ...+..+...+.+.|++++|.
T Consensus        48 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~  127 (389)
T PRK11788         48 NEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE  127 (389)
T ss_pred             cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            3444444444444444333 233444555555555555555555555444321111   123444444455555555555


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994          187 DVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLD----WSTYASAAHFYIKANLIDKASDVLKK  262 (496)
Q Consensus       187 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~  262 (496)
                      .+|+++.+.. +++..++..++..+.+.|++++|.+.++.+. +.+..+.    ...+..+...+.+.|++++|...|++
T Consensus       128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  205 (389)
T PRK11788        128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLE-KLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK  205 (389)
T ss_pred             HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            5555544431 1233444444455555555555555554444 2221111    11223334444444555555555544


Q ss_pred             HHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994          263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT  342 (496)
Q Consensus       263 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  342 (496)
                      +.+..+ .+...+..+...+.+.|++++|.++++.+....+.....++..++.+|...|++++|...++.+.+.  .|+.
T Consensus       206 al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~  282 (389)
T PRK11788        206 ALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGA  282 (389)
T ss_pred             HHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc
Confidence            443221 2223344444444444455555544444443322111233444444444444444444444444443  2233


Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh---cCChHHHHHHHHHHHH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD---AGKTERGFQCMKAALS  405 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~  405 (496)
                      ..+..++..+.+.|++++|..+++++.+.  .|+..+++.++..+..   .|+.++++.+++++++
T Consensus       283 ~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        283 DLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             hHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            33344444444444444444444444433  2344444444444332   2244444444444443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=7.4e-22  Score=177.25  Aligned_cols=386  Identities=14%  Similarity=0.084  Sum_probs=325.4

Q ss_pred             CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHH-H
Q 010994           57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY-G  135 (496)
Q Consensus        57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~  135 (496)
                      ..+--..+|+.+...+-..|++++|+.+++.+++..  |...+.+..+...+...|+.+.|.+.|....+.+|+.... +
T Consensus       111 ~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s  188 (966)
T KOG4626|consen  111 KNPQGAEAYSNLANILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARS  188 (966)
T ss_pred             ccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhc
Confidence            345556789999999999999999999999999976  2455677777888889999999999999999999975443 4


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhc
Q 010994          136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD-NFSYRICINSYGAR  214 (496)
Q Consensus       136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~  214 (496)
                      -+...+...|+.++|...|.+..+... -=...|..|...+-..|+...|+..|++..+.  .|+ ...|-.|...|...
T Consensus       189 ~lgnLlka~Grl~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~  265 (966)
T KOG4626|consen  189 DLGNLLKAEGRLEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEA  265 (966)
T ss_pred             chhHHHHhhcccchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHH
Confidence            455666678999999999988877522 23567999999999999999999999999874  554 46788999999999


Q ss_pred             CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994          215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL  294 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  294 (496)
                      +.++.|...+.+.. ...+ -...++..+...|...|++|-|+..|++..+..+ .=...|+.|..++-..|++.+|.+.
T Consensus       266 ~~~d~Avs~Y~rAl-~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~c  342 (966)
T KOG4626|consen  266 RIFDRAVSCYLRAL-NLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDC  342 (966)
T ss_pred             hcchHHHHHHHHHH-hcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHH
Confidence            99999999998887 3332 4567788888999999999999999999887543 3357899999999999999999999


Q ss_pred             HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994          295 WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA  374 (496)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (496)
                      |......++ ......+.+...+...|.+++|..+|....+-... -...++.|...|-++|++++|+..|++.+.  +.
T Consensus       343 YnkaL~l~p-~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~  418 (966)
T KOG4626|consen  343 YNKALRLCP-NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IK  418 (966)
T ss_pred             HHHHHHhCC-ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cC
Confidence            999888876 55677888999999999999999999998875322 245678899999999999999999999987  45


Q ss_pred             CCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 010994          375 TTP-NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQ  452 (496)
Q Consensus       375 p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  452 (496)
                      |+. ..|+.+...|-..|+.+.|++.+.+++.       +.|.- ..++.|...|...|++.+|.+-++...+..|.-+.
T Consensus       419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~-------~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd  491 (966)
T KOG4626|consen  419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ-------INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD  491 (966)
T ss_pred             chHHHHHHhcchHHHHhhhHHHHHHHHHHHHh-------cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence            554 5899999999999999999999999987       77764 68889999999999999999999988887666677


Q ss_pred             HHHHHHHHH
Q 010994          453 MYHAFIKAN  461 (496)
Q Consensus       453 ~~~~l~~~~  461 (496)
                      .|..++.++
T Consensus       492 A~cNllh~l  500 (966)
T KOG4626|consen  492 AYCNLLHCL  500 (966)
T ss_pred             hhhHHHHHH
Confidence            777777664

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.92  E-value=1.4e-21  Score=183.53  Aligned_cols=295  Identities=14%  Similarity=0.087  Sum_probs=199.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhc
Q 010994          138 LNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD---NFSYRICINSYGAR  214 (496)
Q Consensus       138 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~  214 (496)
                      ...+...|++++|...|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++   ..++..+...|.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            4455677888888888888887643 3566788888888888888888888888877532221   24567777888888


Q ss_pred             CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc----chHHHHHHHHHhcCCHHH
Q 010994          215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG----IGYNFLISLYASLGNKSE  290 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~  290 (496)
                      |+++.|..+|+++. +... .+..++..++..+.+.|++++|.+.++.+.+.++.++.    ..+..+...+...|++++
T Consensus       121 g~~~~A~~~~~~~l-~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  198 (389)
T PRK11788        121 GLLDRAEELFLQLV-DEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDA  198 (389)
T ss_pred             CCHHHHHHHHHHHH-cCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHH
Confidence            88888888888887 4433 56677788888888888888888888888765443221    134455666677777777


Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994          291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE  370 (496)
Q Consensus       291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (496)
                      |...|+++....+ .+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++|...++++.+
T Consensus       199 A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  277 (389)
T PRK11788        199 ARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE  277 (389)
T ss_pred             HHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777776665543 334556666677777777777777777776553222234456666777777777777777777666


Q ss_pred             cCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHh
Q 010994          371 KGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD---EGSVQDVEAFVAALRT  445 (496)
Q Consensus       371 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~  445 (496)
                      ..  |+...+..++..+.+.|++++|..+++++++       ..|+..++..++..+..   .|+.+++..+++.+.+
T Consensus       278 ~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~-------~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~  346 (389)
T PRK11788        278 EY--PGADLLLALAQLLEEQEGPEAAQALLREQLR-------RHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG  346 (389)
T ss_pred             hC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence            53  4444556666777777777777777777665       35666666666655543   3466666666665544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=2.3e-20  Score=183.55  Aligned_cols=332  Identities=10%  Similarity=-0.058  Sum_probs=274.8

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYV  142 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~  142 (496)
                      -...++..+.+.|++++|+.+++......  +-.++....++......|+++.|...|+++....| +...+..+...+.
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~  121 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLL  121 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            34567788899999999999999999876  35566677777777889999999999999999988 5788899999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHH
Q 010994          143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI  222 (496)
Q Consensus       143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~  222 (496)
                      ..|++++|...+++..... +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|..
T Consensus       122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~  198 (656)
T PRK15174        122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD  198 (656)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence            9999999999999998863 336778899999999999999999999988775432 22333333 34788999999999


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH----HHHHHHHH
Q 010994          223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE----VLRLWDLE  298 (496)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~  298 (496)
                      .++.+. .....++...+..+...+...|++++|...+++.....+ .+...+..+...+...|++++    |...|+..
T Consensus       199 ~~~~~l-~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A  276 (656)
T PRK15174        199 LARALL-PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA  276 (656)
T ss_pred             HHHHHH-hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence            999987 554334555556667889999999999999999987654 566788889999999999986    89999988


Q ss_pred             HhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHh
Q 010994          299 KTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPN  378 (496)
Q Consensus       299 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~  378 (496)
                      ....+ .+...+..+...+...|++++|...+++..+..+. +...+..+...|.+.|++++|...|+++.+.++. +..
T Consensus       277 l~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~  353 (656)
T PRK15174        277 LQFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSK  353 (656)
T ss_pred             HhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chH
Confidence            88765 56788999999999999999999999999987432 4556778889999999999999999999986533 333


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          379 SWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+..+..++...|+.++|...|+++++
T Consensus       354 ~~~~~a~al~~~G~~deA~~~l~~al~  380 (656)
T PRK15174        354 WNRYAAAALLQAGKTSEAESVFEHYIQ  380 (656)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            445567789999999999999999987

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.91  E-value=1.8e-19  Score=177.96  Aligned_cols=398  Identities=10%  Similarity=-0.017  Sum_probs=289.7

Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHh
Q 010994           65 LQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVR  143 (496)
Q Consensus        65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~  143 (496)
                      +......+.+.|++++|+..|+..+...   +++..+..+..++.+.|++++|+..++.+.+.+| +...|..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~---p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIECK---PDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4566778888999999999999999866   3466666677888899999999999999999888 47889999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHH-------------HHHHHHH------------C--C
Q 010994          144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD-------------VLTEMKA------------K--N  196 (496)
Q Consensus       144 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~-------------~~~~m~~------------~--~  196 (496)
                      .|++++|+.-|......+-..+.. ...++..+.......++..             .......            .  .
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE  285 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence            999999998887665432111111 1111111100000000000             0000000            0  0


Q ss_pred             CCCCh-hhHHHHHHH---HhhcCChHHHHHHHHHhhcCCC-CC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC
Q 010994          197 IFPDN-FSYRICINS---YGARSDLEGMEIILREMESQPH-IV-LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK  270 (496)
Q Consensus       197 ~~p~~-~~~~~li~~---~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~  270 (496)
                      ..++. ..+..+...   ....+++++|.+.|+... +.+ .. .....++.+...+...|++++|+..|++..+..+ .
T Consensus       286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al-~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~  363 (615)
T TIGR00990       286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKAL-DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-R  363 (615)
T ss_pred             cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHH-hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C
Confidence            01110 011111111   123467899999999988 433 22 3456678888899999999999999999887543 3


Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994          271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII  350 (496)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (496)
                      +...|..+...+...|++++|...|+......+ .+...+..+...+...|++++|...|++..+... .+...+..+..
T Consensus       364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~  441 (615)
T TIGR00990       364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV  441 (615)
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence            456788889999999999999999998877655 5567888899999999999999999999988742 35666778888


Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-------H-HHHH
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-------K-VITS  422 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-------~-~~~~  422 (496)
                      .+.+.|++++|+..|++..+..+. +...|+.+...+...|++++|+..|++++.       +.|+.       . .++.
T Consensus       442 ~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~-------l~p~~~~~~~~~~~l~~~  513 (615)
T TIGR00990       442 TQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIE-------LEKETKPMYMNVLPLINK  513 (615)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHh-------cCCccccccccHHHHHHH
Confidence            899999999999999999886543 678899999999999999999999999987       23321       1 1122


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhC
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKAD  478 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~  478 (496)
                      .+..+...|++++|.+++++.....|.+...+..++..+.+.|  ++|+..|++..+.
T Consensus       514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            2223344699999999999887777777788999999999999  8999999998764

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.91  E-value=6.9e-20  Score=192.59  Aligned_cols=394  Identities=9%  Similarity=-0.023  Sum_probs=239.7

Q ss_pred             HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCH---HHH-----------
Q 010994           69 IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTY---QTY-----------  134 (496)
Q Consensus        69 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~-----------  134 (496)
                      ...+...|++++|+..|+...+..  |.++..+..+...+.+.|++++|+..|+++.+..|+.   ..|           
T Consensus       276 G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        276 GLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            334445556666666666555543  1234444445555555566666666665555544421   111           


Q ss_pred             -HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH--------
Q 010994          135 -GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR--------  205 (496)
Q Consensus       135 -~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--------  205 (496)
                       ......+.+.|++++|...|++..+... .+...+..+...+...|++++|.+.|++..+... .+...+.        
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~  431 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQ  431 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHh
Confidence             1123344555666666666655555422 2444455555555556666666666655554321 1222222        


Q ss_pred             ----------------------------------HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 010994          206 ----------------------------------ICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN  251 (496)
Q Consensus       206 ----------------------------------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  251 (496)
                                                        .+...+...|++++|++.+++.. ...+ -+...+..+...|.+.|
T Consensus       432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al-~~~P-~~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRL-ALDP-GSVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcC
Confidence                                              23344445566666666666665 3332 23444555666666666


Q ss_pred             ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc---------hhHHHHHHHHHhcCC
Q 010994          252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN---------RDYITMLEALMKLGE  322 (496)
Q Consensus       252 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~  322 (496)
                      ++++|...++++.+..+ .+...+..+...+...++.++|+..++.+......+..         ..+......+...|+
T Consensus       510 ~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        510 QRSQADALMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            66666666666654332 23333333444455566666666666543221110110         112234556677788


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHH
Q 010994          323 HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKA  402 (496)
Q Consensus       323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  402 (496)
                      .++|..+++.     .+.+...+..+...+.+.|++++|+..|++..+..+. +...+..++..+...|+.++|++.++.
T Consensus       589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~  662 (1157)
T PRK11447        589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAK  662 (1157)
T ss_pred             HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8888877761     2445667778889999999999999999999987655 788899999999999999999999998


Q ss_pred             HHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHhCC--CcHHHHHH
Q 010994          403 ALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM------NRQMYHAFIKANIRNG--KGVDELLD  473 (496)
Q Consensus       403 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g--~~a~~~~~  473 (496)
                      +.+       ..| +......+..++...|++++|.++++.+....+.      +...+..+...+...|  ++|++.|+
T Consensus       663 ll~-------~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~  735 (1157)
T PRK11447        663 LPA-------TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK  735 (1157)
T ss_pred             Hhc-------cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            875       344 4556677888888999999999999988775332      2346677788888888  79999988


Q ss_pred             HHH-hCCCCC
Q 010994          474 SMK-ADGIDE  482 (496)
Q Consensus       474 ~m~-~~g~~p  482 (496)
                      +.. ..|+.|
T Consensus       736 ~Al~~~~~~~  745 (1157)
T PRK11447        736 DAMVASGITP  745 (1157)
T ss_pred             HHHhhcCCCC
Confidence            865 445543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.90  E-value=3.9e-19  Score=186.99  Aligned_cols=416  Identities=11%  Similarity=0.028  Sum_probs=272.6

Q ss_pred             CcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCC---------------CCCcch---------
Q 010994           45 RIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGIC---------------VFAPCD---------  100 (496)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---------------~~~~~~---------  100 (496)
                      .....++.+.+. .+-+...+..+...+...|++++|++.++.+.+....               +..+..         
T Consensus       165 ~A~~~L~~ll~~-~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~  243 (1157)
T PRK11447        165 EAINQLQRLNAD-YPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQ  243 (1157)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHH
Confidence            344456665443 3456677888999999999999999999988654210               000000         


Q ss_pred             -------hh---------------------hhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHH
Q 010994          101 -------HA---------------------VQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKAL  151 (496)
Q Consensus       101 -------~~---------------------~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~  151 (496)
                             ..                     .....+...|++++|+..|+++....| +..++..+..++.+.|++++|+
T Consensus       244 ~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~  323 (1157)
T PRK11447        244 VFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAV  323 (1157)
T ss_pred             HCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                   00                     012334567889999999999888877 6888888999999999999999


Q ss_pred             HHHHHHHHCCCCC-ChhHHH------------HHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH
Q 010994          152 SHFRKMKEMGIAL-STLTYN------------DIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE  218 (496)
Q Consensus       152 ~~~~~m~~~g~~p-~~~~~~------------~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~  218 (496)
                      ..|++..+..... +...|.            .....+.+.|++++|...|+++.+.. +.+...+..+..++...|+++
T Consensus       324 ~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~  402 (1157)
T PRK11447        324 AQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYA  402 (1157)
T ss_pred             HHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence            9999887764321 111121            22446678899999999999998863 234566777888899999999


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc--------CccchHHHHHHHHHhcCCHHH
Q 010994          219 GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ--------KDGIGYNFLISLYASLGNKSE  290 (496)
Q Consensus       219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~l~~~~~~~~~~~~  290 (496)
                      +|++.|+++. +... .+...+..+...|. .++.++|..+++.+......        .....+..+...+...|++++
T Consensus       403 eA~~~y~~aL-~~~p-~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~e  479 (1157)
T PRK11447        403 AAERYYQQAL-RMDP-GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQ  479 (1157)
T ss_pred             HHHHHHHHHH-HhCC-CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHH
Confidence            9999999887 4443 33444444444442 23444554444432111000        001123333444445555555


Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH-------------------------
Q 010994          291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP-------------------------  345 (496)
Q Consensus       291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------------------------  345 (496)
                      |++.|+......+ .+...+..+...|.+.|++++|...++++.+.... +...+                         
T Consensus       480 A~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~  557 (1157)
T PRK11447        480 AAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPR  557 (1157)
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCc
Confidence            5555555544433 23344444555555555555555555555443211 11111                         


Q ss_pred             -------------------HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994          346 -------------------NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSV  406 (496)
Q Consensus       346 -------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  406 (496)
                                         ..+...+...|+.++|..+++.     .+.+...+..+...+.+.|++++|+..|+++++ 
T Consensus       558 ~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~-  631 (1157)
T PRK11447        558 AQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT-  631 (1157)
T ss_pred             hhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence                               1233445566666666666651     233556778889999999999999999999997 


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhC
Q 010994          407 YVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKAD  478 (496)
Q Consensus       407 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~  478 (496)
                           .-+.+...+..+...+...|++++|.+.++.+....|.+...+..+..++...|  ++|.++++++...
T Consensus       632 -----~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        632 -----REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             -----hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence                 233456788899999999999999999999888777778888888999999999  8999999998864

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.90  E-value=4.2e-19  Score=174.67  Aligned_cols=333  Identities=11%  Similarity=0.000  Sum_probs=272.2

Q ss_pred             hhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 010994          100 DHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK  178 (496)
Q Consensus       100 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~  178 (496)
                      .....+..+.+.|+++.|..++..+....|+ ...+..++.+....|++++|...++++..... .+...+..+...+..
T Consensus        44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~  122 (656)
T PRK15174         44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLK  122 (656)
T ss_pred             CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHH
Confidence            3444556677889999999999999988774 66677777888889999999999999988743 367788999999999


Q ss_pred             cCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010994          179 TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASD  258 (496)
Q Consensus       179 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  258 (496)
                      .|++++|...++++.+.. +.+...+..+..++...|++++|...++.+. .... .+...+..+ ..+...|++++|..
T Consensus       123 ~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~-~~~P-~~~~a~~~~-~~l~~~g~~~eA~~  198 (656)
T PRK15174        123 SKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA-QEVP-PRGDMIATC-LSFLNKSRLPEDHD  198 (656)
T ss_pred             cCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH-HhCC-CCHHHHHHH-HHHHHcCCHHHHHH
Confidence            999999999999998852 2346678888999999999999999999886 4433 233344333 34788999999999


Q ss_pred             HHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH----HHHHHHHHH
Q 010994          259 VLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEE----AEKVLKEWE  334 (496)
Q Consensus       259 ~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~  334 (496)
                      .++.+.+..+.++...+..+..++...|++++|...++......+ .+...+..+...+...|++++    |...++.+.
T Consensus       199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al  277 (656)
T PRK15174        199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL  277 (656)
T ss_pred             HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence            999987765444555566667889999999999999998887765 566778889999999999986    899999998


Q ss_pred             hcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC
Q 010994          335 LSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK  414 (496)
Q Consensus       335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  414 (496)
                      +..+ .+...+..+...+...|++++|...+++..+..+. +...+..+...+.+.|++++|+..++++..       ..
T Consensus       278 ~l~P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~-------~~  348 (656)
T PRK15174        278 QFNS-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAR-------EK  348 (656)
T ss_pred             hhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hC
Confidence            8743 35678889999999999999999999999987654 567788899999999999999999999987       45


Q ss_pred             CCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 010994          415 PDPK-VITSILSKLGDEGSVQDVEAFVAALRTVI  447 (496)
Q Consensus       415 p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  447 (496)
                      |+.. .+..+..++...|+.++|...|+...+..
T Consensus       349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            6543 34445677899999999999999877643

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.89  E-value=1e-18  Score=175.68  Aligned_cols=419  Identities=9%  Similarity=0.003  Sum_probs=316.9

Q ss_pred             CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHH
Q 010994           57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYG  135 (496)
Q Consensus        57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  135 (496)
                      ..+.+.....-.+......|+.++|++++.......  +.....+..+...+...|++++|...++++....| +...+.
T Consensus        10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~   87 (765)
T PRK10049         10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR   87 (765)
T ss_pred             ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            455666777788888999999999999999998733  24444577778889999999999999999988877 577888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994          136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS  215 (496)
Q Consensus       136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~  215 (496)
                      .+...+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|...++++.+.... +...+..+..++...+
T Consensus        88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~  164 (765)
T PRK10049         88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNR  164 (765)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCC
Confidence            89999999999999999999998873 33566 888999999999999999999999986322 4555666778888899


Q ss_pred             ChHHHHHHHHHhhcCCCCCCCH------HHHHHHHHHHHh-----cCCh---HHHHHHHHHHHHhc-ccCccc-hH----
Q 010994          216 DLEGMEIILREMESQPHIVLDW------STYASAAHFYIK-----ANLI---DKASDVLKKAEERL-EQKDGI-GY----  275 (496)
Q Consensus       216 ~~~~a~~~~~~~~~~~~~~~~~------~~~~~li~~~~~-----~~~~---~~a~~~~~~m~~~~-~~~~~~-~~----  275 (496)
                      +.+.|++.++... .   .|+.      .....++.....     .+++   ++|+..++.+.+.. ..|+.. .+    
T Consensus       165 ~~e~Al~~l~~~~-~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~  240 (765)
T PRK10049        165 LSAPALGAIDDAN-L---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRAR  240 (765)
T ss_pred             ChHHHHHHHHhCC-C---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHH
Confidence            9999999998776 3   1322      122223333321     2234   77888888887542 123221 11    


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CcccHHHHHHHH
Q 010994          276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY---DTRIPNAVIIGY  352 (496)
Q Consensus       276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~  352 (496)
                      ...+..+...|++++|+..|+.+..............+..+|...|++++|...|+.+.+.....   .......+..++
T Consensus       241 ~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~  320 (765)
T PRK10049        241 IDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSL  320 (765)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHH
Confidence            11134556779999999999988876542122233335778999999999999999987653221   123455667788


Q ss_pred             HhcCchhHHHHHHHHHHhcCC-----------CCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 010994          353 CNNGLVQNAEAILEDLVEKGK-----------ATT---PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK  418 (496)
Q Consensus       353 ~~~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~  418 (496)
                      ...|++++|..+++.+.+..+           .|+   ...+..+...+...|+.++|++.++++..      ..+.+..
T Consensus       321 ~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~------~~P~n~~  394 (765)
T PRK10049        321 LESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY------NAPGNQG  394 (765)
T ss_pred             HhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHH
Confidence            999999999999999987632           123   23456778889999999999999999987      4445667


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHh
Q 010994          419 VITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVC  492 (496)
Q Consensus       419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~  492 (496)
                      .+..+...+...|++++|++.+++.....|.+...+..++..+.+.|  ++|..+++++.+  ..|+......|-+
T Consensus       395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~--~~Pd~~~~~~~~~  468 (765)
T PRK10049        395 LRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA--REPQDPGVQRLAR  468 (765)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            88889999999999999999999999888888888888888888888  899999999988  5687776555433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.86  E-value=1.1e-17  Score=168.37  Aligned_cols=404  Identities=8%  Similarity=-0.034  Sum_probs=297.7

Q ss_pred             cHHhhhccCCCCCCCcHHHHHHHHHc--CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHH
Q 010994           31 TLYSIISPLGNPGTRIEPELDNWVKN--GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLI  108 (496)
Q Consensus        31 ~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (496)
                      ..+....-.|+..    .++..|.+.  ..+.+...+..+...+.+.|++++|.++++...+..  |.++.....+...+
T Consensus        20 d~~~ia~~~g~~~----~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l   93 (765)
T PRK10049         20 DWLQIALWAGQDA----EVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTL   93 (765)
T ss_pred             HHHHHHHHcCCHH----HHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence            3444444444433    233444433  245555678999999999999999999999999875  34566666777888


Q ss_pred             HhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHH
Q 010994          109 GRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD  187 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~  187 (496)
                      ...|++++|...++++....| +.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..++|+.
T Consensus        94 ~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~  171 (765)
T PRK10049         94 ADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALG  171 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHH
Confidence            899999999999999998887 466 888999999999999999999999987433 66677778888888899999999


Q ss_pred             HHHHHHHCCCCCCh------hhHHHHHHHHh-----hcCCh---HHHHHHHHHhhcCCCCCCCHH-HHH----HHHHHHH
Q 010994          188 VLTEMKAKNIFPDN------FSYRICINSYG-----ARSDL---EGMEIILREMESQPHIVLDWS-TYA----SAAHFYI  248 (496)
Q Consensus       188 ~~~~m~~~~~~p~~------~~~~~li~~~~-----~~~~~---~~a~~~~~~~~~~~~~~~~~~-~~~----~li~~~~  248 (496)
                      .++....   .|+.      .....++....     ..+++   ++|++.++.+.......|+.. .+.    ..+..+.
T Consensus       172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll  248 (765)
T PRK10049        172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL  248 (765)
T ss_pred             HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence            8876654   2321      01122222222     22234   778888888872212223221 111    1134456


Q ss_pred             hcCChHHHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC---CchhHHHHHHHHHhcCCHH
Q 010994          249 KANLIDKASDVLKKAEERLEQ-KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY---INRDYITMLEALMKLGEHE  324 (496)
Q Consensus       249 ~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~  324 (496)
                      ..|+.++|+..|+.+.+.+.. |+ .....+...|...|++++|+..|+.+....+..   .......+..++...|+++
T Consensus       249 ~~g~~~eA~~~~~~ll~~~~~~P~-~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~  327 (765)
T PRK10049        249 ARDRYKDVISEYQRLKAEGQIIPP-WAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP  327 (765)
T ss_pred             HhhhHHHHHHHHHHhhccCCCCCH-HHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence            779999999999999886532 22 222335778999999999999999877654321   1234566777889999999


Q ss_pred             HHHHHHHHHHhcCC-----------CCCc---ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 010994          325 EAEKVLKEWELSGN-----------SYDT---RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA  390 (496)
Q Consensus       325 ~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  390 (496)
                      +|..+++.+.+...           .|+.   ..+..+...+...|+.++|+.+++++....+. +...+..+...+...
T Consensus       328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~  406 (765)
T PRK10049        328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQAR  406 (765)
T ss_pred             HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence            99999999987631           1221   23456777888999999999999999987655 788999999999999


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994          391 GKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY  454 (496)
Q Consensus       391 ~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  454 (496)
                      |++++|++.+++++.       ..|+ ...+......+...|++++|..+++.+....|.++.+.
T Consensus       407 g~~~~A~~~l~~al~-------l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~  464 (765)
T PRK10049        407 GWPRAAENELKKAEV-------LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ  464 (765)
T ss_pred             CCHHHHHHHHHHHHh-------hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            999999999999987       5565 56666777788999999999999999998777776553

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.86  E-value=5.8e-17  Score=160.26  Aligned_cols=378  Identities=10%  Similarity=-0.055  Sum_probs=273.8

Q ss_pred             CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHH
Q 010994           57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYG  135 (496)
Q Consensus        57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~  135 (496)
                      ...|+...|..+..+|.+.|++++|++.++..++..  |..+..+......+...|++++|+..|..+...++ +.....
T Consensus       155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~  232 (615)
T TIGR00990       155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSA  232 (615)
T ss_pred             hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHH
Confidence            455678889999999999999999999999999875  24455677778889999999999998876655433 211111


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC---------------------------CCCCC-hhHHHHHHHHH---HhcCCCCc
Q 010994          136 ALLNCYVRQRQTDKALSHFRKMKEM---------------------------GIALS-TLTYNDIMCLY---SKTGQYEK  184 (496)
Q Consensus       136 ~li~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~p~-~~~~~~l~~~~---~~~~~~~~  184 (496)
                      .++..+.......++...++.-...                           ...|+ ...+..+...+   ...+++++
T Consensus       233 ~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~  312 (615)
T TIGR00990       233 QAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEE  312 (615)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHH
Confidence            1221111111111111111100000                           00000 00011111111   12357889


Q ss_pred             HHHHHHHHHHCC-CCC-ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994          185 VPDVLTEMKAKN-IFP-DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK  262 (496)
Q Consensus       185 a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  262 (496)
                      |.+.|+.....+ ..| +...+..+...+...|++++|+..+++.. ...+ .....|..+...+...|++++|...|++
T Consensus       313 A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal-~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~  390 (615)
T TIGR00990       313 AARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI-ELDP-RVTQSYIKRASMNLELGDPDKAEEDFDK  390 (615)
T ss_pred             HHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999998765 234 34567888888999999999999999988 5443 4466788899999999999999999999


Q ss_pred             HHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994          263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT  342 (496)
Q Consensus       263 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  342 (496)
                      ..+..+ .+..+|..+...+...|++++|+..|+......+ .+...+..+..++.+.|++++|...++...+.. +.+.
T Consensus       391 al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~  467 (615)
T TIGR00990       391 ALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAP  467 (615)
T ss_pred             HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCh
Confidence            987643 5678899999999999999999999998888765 556778888999999999999999999998763 3356


Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHh------HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPN------SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD  416 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~  416 (496)
                      ..++.+...+...|++++|...|++..+.....+..      .++.....+...|++++|.+++++++.       +.|+
T Consensus       468 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~-------l~p~  540 (615)
T TIGR00990       468 DVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI-------IDPE  540 (615)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-------cCCC
Confidence            788899999999999999999999998764331111      122223334457999999999999987       3454


Q ss_pred             H-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          417 P-KVITSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       417 ~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                      . ..+..+...+.+.|++++|...|++..+..+
T Consensus       541 ~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       541 CDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            4 5788899999999999999999998876533

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.85  E-value=3.1e-16  Score=154.92  Aligned_cols=408  Identities=8%  Similarity=0.010  Sum_probs=251.9

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcC
Q 010994           67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQR  145 (496)
Q Consensus        67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g  145 (496)
                      .++..+...|+.++|+..++......  +............+...|+++.|+.+|+++.+.+| |+..+..++..+...+
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~~p~--n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~  150 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQSSM--NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAG  150 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhccCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcC
Confidence            55566666666666666666665221  11112222223455566666666666666666655 3555556666666666


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 010994          146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILR  225 (496)
Q Consensus       146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~  225 (496)
                      +.++|++.++.+...  .|+...+..++..+...++..+|++.++++.+.. +-+...+..++.+..+.|-.+.|.++..
T Consensus       151 q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        151 RGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            666666666666554  3343444333333333344444666666666642 2234445556666666666666665554


Q ss_pred             HhhcCCCCCCCHHH-----HHHHHHHH---H--hcCC---hHHHHHHHHHHHHhcc-cCcc-c----hHHHHHHHHHhcC
Q 010994          226 EMESQPHIVLDWST-----YASAAHFY---I--KANL---IDKASDVLKKAEERLE-QKDG-I----GYNFLISLYASLG  286 (496)
Q Consensus       226 ~~~~~~~~~~~~~~-----~~~li~~~---~--~~~~---~~~a~~~~~~m~~~~~-~~~~-~----~~~~l~~~~~~~~  286 (496)
                      +-. +.-...+..-     ...+++.-   .  ...+   .+.|+.-++.+...-. .|.. .    ...-.+-++...|
T Consensus       228 ~~p-~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~  306 (822)
T PRK14574        228 ENP-NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH  306 (822)
T ss_pred             hCc-cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence            432 1110000000     00011000   0  0111   2334444444443211 1221 1    1223456778889


Q ss_pred             CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----CCCcccHHHHHHHHHhcCchhHH
Q 010994          287 NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN-----SYDTRIPNAVIIGYCNNGLVQNA  361 (496)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a  361 (496)
                      ++.++++.|+.+...+......+-..+..+|...+++++|..++..+.....     .++......|.-+|...+++++|
T Consensus       307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A  386 (822)
T PRK14574        307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA  386 (822)
T ss_pred             hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence            9999999999888777655667888899999999999999999999876431     22333346788889999999999


Q ss_pred             HHHHHHHHhcCC-----------CCCH--h-HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994          362 EAILEDLVEKGK-----------ATTP--N-SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL  427 (496)
Q Consensus       362 ~~~~~~~~~~~~-----------~p~~--~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~  427 (496)
                      ..+++++.+..+           .||.  . .+..++..+...|+..+|++.++++..      .-+-|......+...+
T Consensus       387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~------~aP~n~~l~~~~A~v~  460 (822)
T PRK14574        387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS------TAPANQNLRIALASIY  460 (822)
T ss_pred             HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHH
Confidence            999999987322           1222  2 344567778889999999999999986      4455778888888999


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHH
Q 010994          428 GDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKE  488 (496)
Q Consensus       428 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~  488 (496)
                      ...|.+.+|++.++......|.+..+....+.++...|  ++|..+.+.+.+  ..|+.....
T Consensus       461 ~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~--~~Pe~~~~~  521 (822)
T PRK14574        461 LARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVIS--RSPEDIPSQ  521 (822)
T ss_pred             HhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--hCCCchhHH
Confidence            99999999999998777777888888888888888888  788877777766  346555433

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.83  E-value=7.9e-16  Score=132.99  Aligned_cols=407  Identities=12%  Similarity=0.087  Sum_probs=285.8

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc--CH-------------------------HH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH--GF-------------------------LS  116 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------------------~~  116 (496)
                      +=+.|+. +...|..+++.-+|+.|.+.| .+.++.....++++.+-.+  +.                         +.
T Consensus       118 ~E~nL~k-mIS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v  195 (625)
T KOG4422|consen  118 TENNLLK-MISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV  195 (625)
T ss_pred             chhHHHH-HHhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence            4444444 456677888888888888877 5566665555544333211  11                         11


Q ss_pred             HHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC
Q 010994          117 AESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN  196 (496)
Q Consensus       117 A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  196 (496)
                      |.-+|+..+   .+..+|.++|.++++-.+.+.|.+++++-.....+.+..+||.+|.+-.-..    ..++..+|....
T Consensus       196 AdL~~E~~P---KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqk  268 (625)
T KOG4422|consen  196 ADLLFETLP---KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQK  268 (625)
T ss_pred             HHHHHhhcC---CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhh
Confidence            221222211   3678999999999999999999999999988888889999999998765433    288999999999


Q ss_pred             CCCChhhHHHHHHHHhhcCChHH----HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHh----c
Q 010994          197 IFPDNFSYRICINSYGARSDLEG----MEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK-ASDVLKKAEER----L  267 (496)
Q Consensus       197 ~~p~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~~----~  267 (496)
                      +.||..|+|+++.+..+.|+++.    |.+++.+|+ +.|+.|...+|..+|..+.+.++..+ |..++.++...    .
T Consensus       269 m~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmK-eiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~  347 (625)
T KOG4422|consen  269 MTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMK-EIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKT  347 (625)
T ss_pred             cCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHH-HhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCc
Confidence            99999999999999999998875    566788898 99999999999999999999888754 55555555432    1


Q ss_pred             ccC----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994          268 EQK----DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK----RYIN---RDYITMLEALMKLGEHEEAEKVLKEWELS  336 (496)
Q Consensus       268 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (496)
                      .+|    |...|...+..|.+..+.+.|.++-........    .++.   .-|..+..+.++....+.-...|+.|.-.
T Consensus       348 fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~  427 (625)
T KOG4422|consen  348 FKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPS  427 (625)
T ss_pred             ccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            222    334567778888899999999998885444322    1221   23567778888899999999999999988


Q ss_pred             CCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-Ch--------HH-----HHHHHHH
Q 010994          337 GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-KT--------ER-----GFQCMKA  402 (496)
Q Consensus       337 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~~~  402 (496)
                      -.-|+..+...++++....|+++-.-+++..++..|...+...-..++..+++.. +.        ..     |..+++.
T Consensus       428 ~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~  507 (625)
T KOG4422|consen  428 AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEA  507 (625)
T ss_pred             eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            7788999999999999999999999999999998886656665555666665544 11        00     1111111


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-c-CCCCHHHHH---HHHHHHHhCC--CcHHHHHHHH
Q 010994          403 ALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-V-IPMNRQMYH---AFIKANIRNG--KGVDELLDSM  475 (496)
Q Consensus       403 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~-~~~~~~~~~---~l~~~~~~~g--~~a~~~~~~m  475 (496)
                      ....-.+...........+.+.-.+.+.|..++|.++|..+.+ + --|-....|   -+++.-.+..  ..|..+++-|
T Consensus       508 ~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  508 YESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA  587 (625)
T ss_pred             HHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            1100011123445556677777788999999999999998844 3 112222334   4444444444  5777888777


Q ss_pred             HhCCC
Q 010994          476 KADGI  480 (496)
Q Consensus       476 ~~~g~  480 (496)
                      ...++
T Consensus       588 ~~~n~  592 (625)
T KOG4422|consen  588 SAFNL  592 (625)
T ss_pred             HHcCc
Confidence            65543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=1e-16  Score=139.44  Aligned_cols=397  Identities=14%  Similarity=0.084  Sum_probs=245.0

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC------HHHHHHH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT------YQTYGAL  137 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l  137 (496)
                      .+..|...|.....+.+|+..|+-+.+...++.....-..+...+.+.+.+..|+++++....+-|+      ..+.+.+
T Consensus       203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni  282 (840)
T KOG2003|consen  203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI  282 (840)
T ss_pred             HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence            3445555666666677777777777766544333333333445555666666666666655554332      2234444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCh------------hhHH
Q 010994          138 LNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDN------------FSYR  205 (496)
Q Consensus       138 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------------~~~~  205 (496)
                      .-.+.+.|+++.|+..|+...+.  .|+..+-..|+-++.--|+.++..+.|.+|+.-...||.            ...+
T Consensus       283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~  360 (840)
T KOG2003|consen  283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN  360 (840)
T ss_pred             CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence            44556666666666666665544  345444333444444456666666666665543211111            1110


Q ss_pred             H---------------------------------------------------------------HHHHHhhcCChHHHHH
Q 010994          206 I---------------------------------------------------------------CINSYGARSDLEGMEI  222 (496)
Q Consensus       206 ~---------------------------------------------------------------li~~~~~~~~~~~a~~  222 (496)
                      .                                                               -.--+.++|+++.|.+
T Consensus       361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie  440 (840)
T KOG2003|consen  361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE  440 (840)
T ss_pred             HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence            0                                                               0112445677777777


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHH------------------------------------HHhcCChHHHHHHHHHHHHh
Q 010994          223 ILREMESQPHIVLDWSTYASAAHF------------------------------------YIKANLIDKASDVLKKAEER  266 (496)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~li~~------------------------------------~~~~~~~~~a~~~~~~m~~~  266 (496)
                      +++-+. ..+-+.-...-+.|-..                                    ....|++++|.+.|++....
T Consensus       441 ilkv~~-~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n  519 (840)
T KOG2003|consen  441 ILKVFE-KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN  519 (840)
T ss_pred             HHHHHH-hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence            766665 22211111111111100                                    01235666777766665443


Q ss_pred             cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 010994          267 LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN  346 (496)
Q Consensus       267 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  346 (496)
                      ...-. .....+.-.+-..|+.++|++.|-.+...-. .+......+...|-...+..+|.+++.+.... ++.|+.+..
T Consensus       520 dasc~-ealfniglt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils  596 (840)
T KOG2003|consen  520 DASCT-EALFNIGLTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS  596 (840)
T ss_pred             chHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence            22111 1222233345566777777777765444322 55566666777777777888888887776544 456788888


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSK  426 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  426 (496)
                      .|...|-+.|+-..|.+.+-+--.. .+.|..+..-|...|....-+++++.+|+++.-       +.|+..-|..++..
T Consensus       597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-------iqp~~~kwqlmias  668 (840)
T KOG2003|consen  597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-------IQPNQSKWQLMIAS  668 (840)
T ss_pred             HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-------cCccHHHHHHHHHH
Confidence            9999999999999998876554443 344777888888889999999999999999864       89999999988766


Q ss_pred             H-hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHH
Q 010994          427 L-GDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDS  474 (496)
Q Consensus       427 ~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~  474 (496)
                      | .+.|+++.|..+++.+...+|.|..+...|++.+...| .++.++-++
T Consensus       669 c~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~d~key~~k  718 (840)
T KOG2003|consen  669 CFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLKDAKEYADK  718 (840)
T ss_pred             HHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccchhHHHHHHH
Confidence            5 56799999999999999999999999999999999999 555554433

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.81  E-value=3.6e-15  Score=147.48  Aligned_cols=407  Identities=11%  Similarity=0.008  Sum_probs=293.9

Q ss_pred             cHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHH--HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHH
Q 010994           31 TLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRI--IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLI  108 (496)
Q Consensus        31 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (496)
                      .++..+...|.... +...++..   ..+-+...+..+  ...+...|++++|+++|+.+.+..+  -++..+..+...+
T Consensus        73 dll~l~~~~G~~~~-A~~~~eka---~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP--~n~~~l~gLa~~y  146 (822)
T PRK14574         73 DWLQIAGWAGRDQE-VIDVYERY---QSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDP--TNPDLISGMIMTQ  146 (822)
T ss_pred             HHHHHHHHcCCcHH-HHHHHHHh---ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHH
Confidence            55555555555332 22233333   222233334444  5688888999999999999999863  5577777778888


Q ss_pred             HhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHH
Q 010994          109 GRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDV  188 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~  188 (496)
                      ...++.++|+..++++....|+...+..++..+...++..+|+..++++.+.+ +-+...+..+..+..+.|-...|.++
T Consensus       147 ~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l  225 (822)
T PRK14574        147 ADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRL  225 (822)
T ss_pred             hhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence            99999999999999999999987777556555555677777999999999884 33778888999999999999888877


Q ss_pred             HHHHHHCCCCCChhhH------HHHHHHH---h--hcCC---hHHHHHHHHHhhcCCCCCCC-HHHH----HHHHHHHHh
Q 010994          189 LTEMKAKNIFPDNFSY------RICINSY---G--ARSD---LEGMEIILREMESQPHIVLD-WSTY----ASAAHFYIK  249 (496)
Q Consensus       189 ~~~m~~~~~~p~~~~~------~~li~~~---~--~~~~---~~~a~~~~~~~~~~~~~~~~-~~~~----~~li~~~~~  249 (496)
                      ..+-... +.+...-+      ...++.-   .  ...+   .+.|+.-++.+....+..|. ...|    --.+.++..
T Consensus       226 ~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~  304 (822)
T PRK14574        226 AKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLV  304 (822)
T ss_pred             HHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHH
Confidence            6653321 22211111      1112111   0  1112   34455666665522222132 2222    234567888


Q ss_pred             cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcCCHH
Q 010994          250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-----RYINRDYITMLEALMKLGEHE  324 (496)
Q Consensus       250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~  324 (496)
                      .++..++++.|+.+...+.+....+-..+..+|...+++++|..+|+......+     .++......|..++...++++
T Consensus       305 r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~  384 (822)
T PRK14574        305 RHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLD  384 (822)
T ss_pred             hhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHH
Confidence            999999999999999887665667888999999999999999999998866542     123333578899999999999


Q ss_pred             HHHHHHHHHHhcCC-----------CCCc---ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 010994          325 EAEKVLKEWELSGN-----------SYDT---RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA  390 (496)
Q Consensus       325 ~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  390 (496)
                      +|..+++.+.+..+           .|+.   ..+..++..+.-.|+..+|++.++.+....+. |......+...+...
T Consensus       385 ~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~R  463 (822)
T PRK14574        385 KAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLAR  463 (822)
T ss_pred             HHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence            99999999987422           1221   12345677788899999999999999887665 899999999999999


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994          391 GKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM  453 (496)
Q Consensus       391 ~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  453 (496)
                      |.+.+|.+.++.+..       +.|+ ..+......++...|++.+|..+.+.+....|.+..+
T Consensus       464 g~p~~A~~~~k~a~~-------l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        464 DLPRKAEQELKAVES-------LAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             CCHHHHHHHHHHHhh-------hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence            999999999977764       5665 4577788888999999999999999988877766643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.79  E-value=3.6e-14  Score=143.44  Aligned_cols=401  Identities=12%  Similarity=0.072  Sum_probs=240.6

Q ss_pred             CChhhHHHH-HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHh-hcCHHHHHHHHHhchhcCCCHHHHHHH
Q 010994           60 VRVGELQRI-IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGR-VHGFLSAESYFSNLKDDEKTYQTYGAL  137 (496)
Q Consensus        60 ~~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~l  137 (496)
                      |+....... ...|.+.|++++|++++..+.+.++  .+......+...+.+ .++ +.+..+++.  ....|+..+..+
T Consensus       179 ~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p--l~~~~~~~L~~ay~q~l~~-~~a~al~~~--~lk~d~~l~~al  253 (987)
T PRK09782        179 PEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT--LSAAERRQWFDVLLAGQLD-DRLLALQSQ--GIFTDPQSRITY  253 (987)
T ss_pred             CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhhCH-HHHHHHhch--hcccCHHHHHHH
Confidence            334444444 8888899999999999999999873  445545555556666 466 777777553  223578888899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCC-CChhHHHHH------------------------------HHHHHhcCCCC---
Q 010994          138 LNCYVRQRQTDKALSHFRKMKEMGIA-LSTLTYNDI------------------------------MCLYSKTGQYE---  183 (496)
Q Consensus       138 i~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~~~~~l------------------------------~~~~~~~~~~~---  183 (496)
                      ...|.+.|+.++|.++++++...-.. |+..+|..+                              +..+.+.++++   
T Consensus       254 a~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  333 (987)
T PRK09782        254 ATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQ  333 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHH
Confidence            99999999999999998887544222 222222111                              22222333322   


Q ss_pred             ------------------------------------------------------------cHHHHHHHHHHC-C-CCCCh
Q 010994          184 ------------------------------------------------------------KVPDVLTEMKAK-N-IFPDN  201 (496)
Q Consensus       184 ------------------------------------------------------------~a~~~~~~m~~~-~-~~p~~  201 (496)
                                                                                  +|..+|+..... + ..++.
T Consensus       334 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  413 (987)
T PRK09782        334 KLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQ  413 (987)
T ss_pred             HHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCH
Confidence                                                                        222222222220 0 01111


Q ss_pred             hhHHHHHHHHhhcCC---hHHHHHH-------------------------HHHhhcCCCCCC--CHHHHHHHHHHHHhcC
Q 010994          202 FSYRICINSYGARSD---LEGMEII-------------------------LREMESQPHIVL--DWSTYASAAHFYIKAN  251 (496)
Q Consensus       202 ~~~~~li~~~~~~~~---~~~a~~~-------------------------~~~~~~~~~~~~--~~~~~~~li~~~~~~~  251 (496)
                      ...+-++..|.+.+.   ...+..+                         +.... . ..++  +...|..+..++.. +
T Consensus       414 ~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al-~-~~p~~~~~~a~~~LG~~l~~-~  490 (987)
T PRK09782        414 TLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLL-G-DMSPSYDAAAWNRLAKCYRD-T  490 (987)
T ss_pred             HHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhc-c-cCCCCCCHHHHHHHHHHHHh-C
Confidence            112234444444433   1111111                         11111 0 0112  44455555555554 5


Q ss_pred             ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010994          252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLK  331 (496)
Q Consensus       252 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  331 (496)
                      +.++|...+.+.....  |+......+...+...|++++|...|+.+....  ++...+..+..++.+.|+.++|...++
T Consensus       491 ~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~a~~~la~all~~Gd~~eA~~~l~  566 (987)
T PRK09782        491 LPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNEDLLAAANTAQAAGNGAARDRWLQ  566 (987)
T ss_pred             CcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6666777666655433  343333333444457778888888877654432  333445566667777888888888887


Q ss_pred             HHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994          332 EWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK  411 (496)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  411 (496)
                      ...+... .+...+..+.......|++++|...+++..+..  |+...|..+...+.+.|++++|+..+++++.      
T Consensus       567 qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~------  637 (987)
T PRK09782        567 QAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALE------  637 (987)
T ss_pred             HHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------
Confidence            7776531 122222223333344588888888888887754  4567777888888888888888888888876      


Q ss_pred             CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCCh
Q 010994          412 GWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDE  484 (496)
Q Consensus       412 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~  484 (496)
                       ..| +...+..+..++...|++++|...++...+..|.++..+..+..++...|  ++|+..+++..+  +.|+.
T Consensus       638 -l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~--l~P~~  710 (987)
T PRK09782        638 -LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID--DIDNQ  710 (987)
T ss_pred             -hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCC
Confidence             444 34566677777888888888888888777777777888888888888888  678888888776  34554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.79  E-value=3.8e-15  Score=141.50  Aligned_cols=402  Identities=10%  Similarity=-0.017  Sum_probs=241.0

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYV  142 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~  142 (496)
                      .|-.+.+++...|++++|...|-...+.... ...-.+.-+...+.+.|+++.+...|+.+....|| ..+...|...|+
T Consensus       309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d-~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya  387 (1018)
T KOG2002|consen  309 SFYQLGRSYHAQGDFEKAFKYYMESLKADND-NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA  387 (1018)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccCCC-CccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence            4555666666666677776666666654410 00111222355666667777777777766666664 445455555555


Q ss_pred             hcC----CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHH----HCCCCCChhhHHHHHHHHhhc
Q 010994          143 RQR----QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMK----AKNIFPDNFSYRICINSYGAR  214 (496)
Q Consensus       143 ~~g----~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~li~~~~~~  214 (496)
                      ..+    ..+.|..++....+.- +.|...|-.+...+....-+ .++..|....    ..+-.+.+...|.+...+...
T Consensus       388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~  465 (1018)
T KOG2002|consen  388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRL  465 (1018)
T ss_pred             hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence            443    3455555555554442 33566666666655543333 3355554433    334445666777777777777


Q ss_pred             CChHHHHHHHHHhhcCC--CCC------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC
Q 010994          215 SDLEGMEIILREMESQP--HIV------LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLG  286 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~--~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~  286 (496)
                      |+++.|...|.......  ...      ++..+-..+..++-..++.+.|.+.|..+....+ .=+..|-.++......+
T Consensus       466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp-~YId~ylRl~~ma~~k~  544 (1018)
T KOG2002|consen  466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP-GYIDAYLRLGCMARDKN  544 (1018)
T ss_pred             cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc-hhHHHHHHhhHHHHhcc
Confidence            88777777776665220  111      2222222355555566677777777777665432 11233333333333445


Q ss_pred             CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHh-----------
Q 010994          287 NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN-SYDTRIPNAVIIGYCN-----------  354 (496)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~-----------  354 (496)
                      ...+|...++....... .++..++.+...+.+..++..|.+-|..+.+.-. .+|..+.-+|...|.+           
T Consensus       545 ~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek  623 (1018)
T KOG2002|consen  545 NLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK  623 (1018)
T ss_pred             CcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence            66777777776655443 5555666666677777777777776655554322 2355444445554432           


Q ss_pred             -cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCH
Q 010994          355 -NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV  433 (496)
Q Consensus       355 -~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  433 (496)
                       .+..++|+++|.+.+...+. |...-|.+...++..|++.+|..+|.+..+      ...-...+|..+.++|..+|++
T Consensus       624 ~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrE------a~~~~~dv~lNlah~~~e~~qy  696 (1018)
T KOG2002|consen  624 EKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVRE------ATSDFEDVWLNLAHCYVEQGQY  696 (1018)
T ss_pred             HHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHH------HHhhCCceeeeHHHHHHHHHHH
Confidence             24567788888888877665 777777888888888888888888888876      3333455677778888888888


Q ss_pred             HHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994          434 QDVEAFVAALRTV--IPMNRQMYHAFIKANIRNG--KGVDELLDSMKA  477 (496)
Q Consensus       434 ~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~  477 (496)
                      ..|.++|+...+.  ...++.+.+.|.+++.+.|  ++|.+.+.....
T Consensus       697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            8888888855553  3456677888888888888  677776666555

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=3.7e-14  Score=122.87  Aligned_cols=341  Identities=13%  Similarity=0.152  Sum_probs=181.7

Q ss_pred             CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 010994           96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM  173 (496)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~  173 (496)
                      .++.++..++..+|+.-..+.|..++++.....  .+..+||.+|.+-.-..    -.+++.+|....+.||..|+|+++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHH
Confidence            445666666666666666666666666554432  35556666665432221    155666666666666666666666


Q ss_pred             HHHHhcCCCCc----HHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHH-HHHHHHHhhc---CCCCC----CCHHHHH
Q 010994          174 CLYSKTGQYEK----VPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEG-MEIILREMES---QPHIV----LDWSTYA  241 (496)
Q Consensus       174 ~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~---~~~~~----~~~~~~~  241 (496)
                      .+.++.|+++.    |.+++.+|++-|+.|...+|..+|..+++.++..+ |..++.++..   ...++    .|..-|.
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~  360 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ  360 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence            66666665543    34455566666666666666666666666555432 2222222220   11111    2233344


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhc----ccCc---cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994          242 SAAHFYIKANLIDKASDVLKKAEERL----EQKD---GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML  314 (496)
Q Consensus       242 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  314 (496)
                      ..+..|.+..+.+-|..+..-+....    +.|+   ..-|..+....|+....+.....|+.|.-....|+..+...++
T Consensus       361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l  440 (625)
T KOG4422|consen  361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL  440 (625)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence            45555556666666665554443210    1111   1224455555566666666666666666555556666666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC--------------------c-hhHHHHHHHHHHhcCC
Q 010994          315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG--------------------L-VQNAEAILEDLVEKGK  373 (496)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------------------~-~~~a~~~~~~~~~~~~  373 (496)
                      ++....|.++-.-+++..+...|...+...-.-++..+++..                    + .+....--.++.+...
T Consensus       441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~  520 (625)
T KOG4422|consen  441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW  520 (625)
T ss_pred             HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC
Confidence            666666666666566555555442222222222222222211                    1 1111222334444433


Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994          374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG---WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                        .....+.+...+.+.|..++|.+++.-...    +..   ..|.......++....+.++..+|..+++-+...
T Consensus       521 --~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~----~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~  590 (625)
T KOG4422|consen  521 --PATSLNCIAILLLRAGRTQKAWEMLGLFLR----KHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF  590 (625)
T ss_pred             --ChhHHHHHHHHHHHcchHHHHHHHHHHHHh----cCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence              445667777778888888888888877754    122   2233344445666667777788888887766664

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=2.3e-13  Score=119.23  Aligned_cols=372  Identities=13%  Similarity=0.049  Sum_probs=263.4

Q ss_pred             CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHH-H
Q 010994           57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTY-G  135 (496)
Q Consensus        57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~  135 (496)
                      +...|...+-..--.+.+.|..+.|+..|.......     |..+...+.+..-..+.+.+..+...++..  +...- -
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-----P~~W~AWleL~~lit~~e~~~~l~~~l~~~--~h~M~~~  231 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-----PWFWSAWLELSELITDIEILSILVVGLPSD--MHWMKKF  231 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-----CcchHHHHHHHHhhchHHHHHHHHhcCccc--chHHHHH
Confidence            344444444444444556777888888888777654     555555554444444444444443332221  11111 1


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC--CChhhHHHHHHHHhh
Q 010994          136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF--PDNFSYRICINSYGA  213 (496)
Q Consensus       136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~  213 (496)
                      -+..++-...+.++++.=.+.....|++-+...-+....+.-...|+++|+.+|++..+...-  -|..+|..++-.-..
T Consensus       232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~  311 (559)
T KOG1155|consen  232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence            244566666788888888888888888766655555566666778999999999999987311  256677777643332


Q ss_pred             cCChH-HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 010994          214 RSDLE-GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL  292 (496)
Q Consensus       214 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  292 (496)
                      ...+. -|..+++-=  +    --+.|+..+.+.|+-.++.++|...|++..+.++ ....+|+.+.+-|....+...|+
T Consensus       312 ~skLs~LA~~v~~id--K----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi  384 (559)
T KOG1155|consen  312 KSKLSYLAQNVSNID--K----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAI  384 (559)
T ss_pred             hHHHHHHHHHHHHhc--c----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHH
Confidence            22222 122222111  1    3346677788899999999999999999888664 56688999999999999999999


Q ss_pred             HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994          293 RLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG  372 (496)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (496)
                      +-++.....++ .|-..|-.+.++|.-.+...-|+-+|++..+.. +-|...|.+|.++|.+.++.++|++.|.+....|
T Consensus       385 ~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~  462 (559)
T KOG1155|consen  385 ESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG  462 (559)
T ss_pred             HHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc
Confidence            99999988877 788999999999999999999999999998864 4478899999999999999999999999999876


Q ss_pred             CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          373 KATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       373 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      -. +...+..+...|.+.++.++|.+.|.+.++.......+.|.. ....-|..-+.+.+++++|.........
T Consensus       463 dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  463 DT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             cc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            44 668899999999999999999999999887442222233322 2333455567778888887766554443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.74  E-value=2.6e-14  Score=135.89  Aligned_cols=404  Identities=13%  Similarity=0.097  Sum_probs=301.9

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc----CHHHHHHHHHhchhcCC-CHHHHHHHH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH----GFLSAESYFSNLKDDEK-TYQTYGALL  138 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~A~~~~~~~~~~~~-~~~~~~~li  138 (496)
                      .+--|...+.+.|+++.+...|+.+.+..  |.+..+...+..+|...+    ..+.|..++.+.....| |...|-.+.
T Consensus       344 ~~~GlgQm~i~~~dle~s~~~fEkv~k~~--p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~la  421 (1018)
T KOG2002|consen  344 PLVGLGQMYIKRGDLEESKFCFEKVLKQL--PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELA  421 (1018)
T ss_pred             cccchhHHHHHhchHHHHHHHHHHHHHhC--cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            44567889999999999999999999976  245555555666666664    56888888888887766 788888888


Q ss_pred             HHHHhcCCHHHHHHHHHH----HHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC---CCCCCh------hhHH
Q 010994          139 NCYVRQRQTDKALSHFRK----MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK---NIFPDN------FSYR  205 (496)
Q Consensus       139 ~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~------~~~~  205 (496)
                      ..+-...-+ .++..|..    +...+-.+.+...|.+...+...|++.+|...|......   ...+|.      .+--
T Consensus       422 ql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~Y  500 (1018)
T KOG2002|consen  422 QLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKY  500 (1018)
T ss_pred             HHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHH
Confidence            877665444 44777665    345666688899999999999999999999999998765   222333      1233


Q ss_pred             HHHHHHhhcCChHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHh
Q 010994          206 ICINSYGARSDLEGMEIILREMESQPHIVLD-WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYAS  284 (496)
Q Consensus       206 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~  284 (496)
                      .+..+.-..++.+.|.+.|..+. ...  |+ +..|--++...-..+...+|...+...... ...++..++.+...+..
T Consensus       501 Nlarl~E~l~~~~~A~e~Yk~Il-keh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~  576 (1018)
T KOG2002|consen  501 NLARLLEELHDTEVAEEMYKSIL-KEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLK  576 (1018)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHH-HHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHh
Confidence            45566677889999999999998 333  33 334444443444457888999999988773 34777888888889999


Q ss_pred             cCCHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994          285 LGNKSEVLRLWDLEKTACK-RYINRDYITMLEALMK------------LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG  351 (496)
Q Consensus       285 ~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (496)
                      ...+..|.+-|........ .+|..+...|.+.|..            .+..++|.++|.++.+..+ -|...-|.+.-.
T Consensus       577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiV  655 (1018)
T KOG2002|consen  577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIV  655 (1018)
T ss_pred             hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhh
Confidence            9999999887775444332 3455665566665533            2457889999999988753 377888889999


Q ss_pred             HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccC
Q 010994          352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEG  431 (496)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  431 (496)
                      ++..|++..|..+|.+..+.... +..+|-.+.++|..+|++-.|++.|+.....    ..-.-+..+...|.+++.+.|
T Consensus       656 LA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk----f~~~~~~~vl~~Lara~y~~~  730 (1018)
T KOG2002|consen  656 LAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKK----FYKKNRSEVLHYLARAWYEAG  730 (1018)
T ss_pred             hhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHH----hcccCCHHHHHHHHHHHHHhh
Confidence            99999999999999999987543 5678999999999999999999999999882    344557789999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHhCC---------------------CcHHHHHHHHHhCCCC
Q 010994          432 SVQDVEAFVAALRTVIPMNRQM-YHAFIKANIRNG---------------------KGVDELLDSMKADGID  481 (496)
Q Consensus       432 ~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g---------------------~~a~~~~~~m~~~g~~  481 (496)
                      ++.+|.+.+.......|.++.. +|..+ +..+.+                     +.|.++|..|...+-.
T Consensus       731 ~~~eak~~ll~a~~~~p~~~~v~FN~a~-v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  731 KLQEAKEALLKARHLAPSNTSVKFNLAL-VLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             hHHHHHHHHHHHHHhCCccchHHhHHHH-HHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999988777766666544 44332 222211                     4677888888765443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.73  E-value=2e-13  Score=138.18  Aligned_cols=386  Identities=13%  Similarity=-0.000  Sum_probs=251.2

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcC
Q 010994           67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQR  145 (496)
Q Consensus        67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g  145 (496)
                      .++..+.+++++..+.++..  ...+    ++ ............+...++......+-...| +.....-+.-...+.|
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~--~~~~----~~-~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~  390 (987)
T PRK09782        318 ATLPVLLKEGQYDAAQKLLA--TLPA----NE-MLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNG  390 (987)
T ss_pred             HHHHHHHhccHHHHHHHHhc--CCCc----ch-HHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence            34667777787776665522  1111    11 111112222234566666666666666544 5665555666667778


Q ss_pred             CHHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCCCC---cHHHH----------------------HHHHHHC-CC
Q 010994          146 QTDKALSHFRKMKEM--GIALSTLTYNDIMCLYSKTGQYE---KVPDV----------------------LTEMKAK-NI  197 (496)
Q Consensus       146 ~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~---~a~~~----------------------~~~m~~~-~~  197 (496)
                      +.++|.++|+.....  +-.++....+-++..|.+.+...   ++..+                      ++..... +.
T Consensus       391 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  470 (987)
T PRK09782        391 QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGD  470 (987)
T ss_pred             cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhccc
Confidence            888888888776552  12234444556666666665522   22111                      1122111 11


Q ss_pred             -CC--ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccch
Q 010994          198 -FP--DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG  274 (496)
Q Consensus       198 -~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  274 (496)
                       ++  +...|..+..++.. ++.++|...+.+.. ...  |+......+...+...|++++|...|+++...  +|+...
T Consensus       471 ~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al-~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a  544 (987)
T PRK09782        471 MSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAE-QRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNED  544 (987)
T ss_pred             CCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHH-HhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHH
Confidence             23  45667777777766 78888888776665 333  44433334455556889999999999887553  244455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 010994          275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN  354 (496)
Q Consensus       275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  354 (496)
                      +..+..++.+.|+.++|...++......+ .....+..+.......|++++|...+++..+.  .|+...+..+...+.+
T Consensus       545 ~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~  621 (987)
T PRK09782        545 LLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ  621 (987)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            66777788888999999999887776543 22233333344444568999999999888876  4567778888888889


Q ss_pred             cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCH
Q 010994          355 NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSV  433 (496)
Q Consensus       355 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~  433 (496)
                      .|+.++|...+++..+..+. +...++.+...+...|+.++|+..++++++       ..| +...+..+..++...|++
T Consensus       622 lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~-------l~P~~~~a~~nLA~al~~lGd~  693 (987)
T PRK09782        622 RHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHK-------GLPDDPALIRQLAYVNQRLDDM  693 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHCCCH
Confidence            99999999999998887655 677888888888899999999999999887       444 556788888888899999


Q ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994          434 QDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK  476 (496)
Q Consensus       434 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~  476 (496)
                      ++|...+++.....|.+..+.-.......+..  +.|.+-+++-.
T Consensus       694 ~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        694 AATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             HHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            99999998888766666666655555555544  55555555543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.71  E-value=3.6e-13  Score=127.46  Aligned_cols=373  Identities=14%  Similarity=0.133  Sum_probs=280.2

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcC
Q 010994           67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQR  145 (496)
Q Consensus        67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g  145 (496)
                      .....+...|++++|.+++.+++++.  |..+..+..+..++-+.|+.+.+...+-.+....| |...|..+.....+.|
T Consensus       144 ~eAN~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~  221 (895)
T KOG2076|consen  144 GEANNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLG  221 (895)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc
Confidence            33444455599999999999999986  47788899999999999999999998888877777 7899999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhH----HHHHHHHhhcCChHHHH
Q 010994          146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSY----RICINSYGARSDLEGME  221 (496)
Q Consensus       146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~li~~~~~~~~~~~a~  221 (496)
                      .+++|.-.|.+..+... ++...+---+..|-+.|+...|.+.|.++.....+.|..-+    ..++..+...++-+.|.
T Consensus       222 ~i~qA~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~  300 (895)
T KOG2076|consen  222 NINQARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAA  300 (895)
T ss_pred             cHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            99999999999998843 46666666788899999999999999999987432232222    33456677788889999


Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc----------------------cchHH---
Q 010994          222 IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD----------------------GIGYN---  276 (496)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----------------------~~~~~---  276 (496)
                      +.++......+-..+...++.++..|.+..+++.|......+......+|                      ...|.   
T Consensus       301 ~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v  380 (895)
T KOG2076|consen  301 KALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV  380 (895)
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh
Confidence            99888774334446677788899999999999999998888765211111                      11111   


Q ss_pred             -HHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994          277 -FLISLYASLGNKSEVLRLWDLEKTAC--KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC  353 (496)
Q Consensus       277 -~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  353 (496)
                       .++-++......+....+........  +..+...|.-+..++...|++..|..+|..+......-+...|-.+..+|.
T Consensus       381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~  460 (895)
T KOG2076|consen  381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM  460 (895)
T ss_pred             HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence             12223333333333333333333333  344557789999999999999999999999998765556778999999999


Q ss_pred             hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhh---hcCCCCCCCHHHHHHHHHHHhcc
Q 010994          354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVY---VEGKGWKPDPKVITSILSKLGDE  430 (496)
Q Consensus       354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~p~~~~~~~l~~~~~~~  430 (496)
                      ..|.++.|...|+..+...+. +...-..|...+.+.|+.++|.+.+..+...-   .+..+..|+..........+.+.
T Consensus       461 ~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~  539 (895)
T KOG2076|consen  461 ELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV  539 (895)
T ss_pred             HHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence            999999999999999987544 55566778888999999999999998854300   11234566666666777788888


Q ss_pred             CCHHHHHHHHHHH
Q 010994          431 GSVQDVEAFVAAL  443 (496)
Q Consensus       431 g~~~~a~~~~~~~  443 (496)
                      |+.++-..+-..|
T Consensus       540 gk~E~fi~t~~~L  552 (895)
T KOG2076|consen  540 GKREEFINTASTL  552 (895)
T ss_pred             hhHHHHHHHHHHH
Confidence            9988755544433

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.70  E-value=8.9e-14  Score=129.34  Aligned_cols=283  Identities=13%  Similarity=0.115  Sum_probs=207.2

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhH-HHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH--HHHHHHhhcCChHHH
Q 010994          144 QRQTDKALSHFRKMKEMGIALSTLT-YNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR--ICINSYGARSDLEGM  220 (496)
Q Consensus       144 ~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~~~~~~a  220 (496)
                      .|++++|.+.+....+..  +++.. |.....+..+.|+++.|...+.++.+.  .|+.....  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            588998888777655542  12333 333345557888999999999888764  44543332  335677888999999


Q ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc-------chHHHHHHHHHhcCCHHHHHH
Q 010994          221 EIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG-------IGYNFLISLYASLGNKSEVLR  293 (496)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~  293 (496)
                      ...++++. +.++ -+......+...|.+.|++++|.+++..+.+....++.       .+|..++.......+.+...+
T Consensus       173 l~~l~~~~-~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~  250 (398)
T PRK10747        173 RHGVDKLL-EVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR  250 (398)
T ss_pred             HHHHHHHH-hcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99998887 5553 56777788888999999999999999988876553222       133333444444455566666


Q ss_pred             HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994          294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK  373 (496)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (496)
                      +++..-... +.+......+..++...|+.++|..++++..+.  .++..  -.++.+....++.+++.+..+...+..+
T Consensus       251 ~w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P  325 (398)
T PRK10747        251 WWKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHG  325 (398)
T ss_pred             HHHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCC
Confidence            666543332 256677888899999999999999999888875  34442  2234444566899999999999888765


Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      . |...+..+...|.+.+++++|.+.|+.+.+       ..|+..++..+...+.+.|+.++|.+++++-..
T Consensus       326 ~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~-------~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        326 D-TPLLWSTLGQLLMKHGEWQEASLAFRAALK-------QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             C-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5 777888999999999999999999999986       679999988999999999999999999886543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.70  E-value=2.1e-16  Score=140.55  Aligned_cols=262  Identities=18%  Similarity=0.165  Sum_probs=99.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 010994          136 ALLNCYVRQRQTDKALSHFRKMKEMG-IALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGAR  214 (496)
Q Consensus       136 ~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  214 (496)
                      .+...+.+.|++++|+++++...... .+.|...|..+...+...++++.|...++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            45667777788888888875544332 2334555555666666777888888888887765433 44556666665 677


Q ss_pred             CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHHHHHH
Q 010994          215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL-EQKDGIGYNFLISLYASLGNKSEVLR  293 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~  293 (496)
                      +++++|.+++...- +..  ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+.
T Consensus        91 ~~~~~A~~~~~~~~-~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~  167 (280)
T PF13429_consen   91 GDPEEALKLAEKAY-ERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR  167 (280)
T ss_dssp             ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred             cccccccccccccc-ccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            78888877776654 222  344555667777778888888888888765432 23456667777778888888888888


Q ss_pred             HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994          294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK  373 (496)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (496)
                      .++......+ .+......++..+...|+.+++..++....+.. +.|...+..+..+|...|+.++|+.+|++..+.++
T Consensus       168 ~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  168 DYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             HHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence            8887777665 456667777778888888888888877777653 45666777888888888888888888888877654


Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      . |+.....+..++...|+.++|.++.+++..
T Consensus       246 ~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 D-DPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T--HHHHHHHHHHHT-----------------
T ss_pred             c-cccccccccccccccccccccccccccccc
Confidence            4 777778888888888888888888877654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=2.3e-12  Score=115.90  Aligned_cols=284  Identities=10%  Similarity=0.003  Sum_probs=223.9

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHH
Q 010994          202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL  281 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  281 (496)
                      ........-|...+++.+..++.+.+. +..+ +....+-.-|.++...|+..+-..+=.++.+.-| ....+|-++..-
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~ll-e~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP-~~a~sW~aVg~Y  321 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELL-EKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP-SKALSWFAVGCY  321 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHH-hhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC-CCCcchhhHHHH
Confidence            334444555667888999999999887 5444 6666676777899999998888888888888654 667899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994          282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA  361 (496)
Q Consensus       282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  361 (496)
                      |...|+.++|.++|.+.....+ .-...|..+...++-.|+-++|...+..+.+.-..-... +--+.--|.+.++.+.|
T Consensus       322 Yl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP-~LYlgmey~~t~n~kLA  399 (611)
T KOG1173|consen  322 YLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLP-SLYLGMEYMRTNNLKLA  399 (611)
T ss_pred             HHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcch-HHHHHHHHHHhccHHHH
Confidence            9999999999999987665544 344678889999999999999999988877642111111 12234457889999999


Q ss_pred             HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC-CCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994          362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK-PDPKVITSILSKLGDEGSVQDVEAFV  440 (496)
Q Consensus       362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~  440 (496)
                      .+.|.+.....+. |+...+.+.......+.+.+|..+|+..+...-....-. -...+++.|..+|.+.+++++|...+
T Consensus       400 e~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~  478 (611)
T KOG1173|consen  400 EKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY  478 (611)
T ss_pred             HHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence            9999999887544 888899999988999999999999999985211111111 24567889999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhh
Q 010994          441 AALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCT  493 (496)
Q Consensus       441 ~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~  493 (496)
                      +......|.+..+|.+++-.|...|  +.|++.|.+...  +.||..+.+.++..
T Consensus       479 q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  479 QKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKL  531 (611)
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHH
Confidence            9998889999999999999999999  999999998665  88999777766653

>TIGR00540 hemY_coli hemY protein

Probab=99.67  E-value=2.8e-13  Score=126.79  Aligned_cols=290  Identities=12%  Similarity=0.010  Sum_probs=182.1

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCh-hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHH
Q 010994          143 RQRQTDKALSHFRKMKEMGIALST-LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME  221 (496)
Q Consensus       143 ~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~  221 (496)
                      ..|+++.|.+.+....+.  .|+. ..+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            467888888888776654  3333 3334445667777888888888887765422222223333466677788888888


Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHH-HHHHHH---HhcCCHHHHHHHHHH
Q 010994          222 IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYN-FLISLY---ASLGNKSEVLRLWDL  297 (496)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~---~~~~~~~~a~~~~~~  297 (496)
                      ..++.+. +..+ -+..+...+...+...|++++|.+.+..+.+.++. +...+. .-..++   ...+..+++.+.+..
T Consensus       174 ~~l~~l~-~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       174 HGVDKLL-EMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHH-HhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            8888877 4443 45566777778888888888888888887776542 222221 111111   222222323334443


Q ss_pred             HHhhcCC---CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc---HHHHHHHHHhcCchhHHHHHHHHHHhc
Q 010994          298 EKTACKR---YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRI---PNAVIIGYCNNGLVQNAEAILEDLVEK  371 (496)
Q Consensus       298 ~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (496)
                      +....+.   .+...+..+...+...|+.++|..++++..+..  ||...   ...........++.+.+.+.++...+.
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            3333321   356677777888888888888888888888763  33321   111222223346677777888777765


Q ss_pred             CCCCCH--hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          372 GKATTP--NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       372 ~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      .+. |+  ....++...+.+.|++++|.+.|+.+..     ....|+...+..+...+.+.|+.++|.+++++...
T Consensus       329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a-----~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAA-----CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH-----hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            433 44  5566788888888888888888885333     34678888788888888888888888888876533

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.67  E-value=2.1e-13  Score=126.80  Aligned_cols=283  Identities=11%  Similarity=0.037  Sum_probs=184.5

Q ss_pred             hcCHHHHHHHHHhchhcCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHH--HHHHHHHhcCCCCcHHH
Q 010994          111 VHGFLSAESYFSNLKDDEKTYQTYGAL-LNCYVRQRQTDKALSHFRKMKEMGIALSTLTYN--DIMCLYSKTGQYEKVPD  187 (496)
Q Consensus       111 ~~~~~~A~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~~~~~~a~~  187 (496)
                      .|+++.|++.+.......+++..+..+ .....+.|+++.|...++++.+.  .|+.....  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            577777777776655543333333333 34446777777777777777664  33433222  33556777777777777


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHH
Q 010994          188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDW-------STYASAAHFYIKANLIDKASDVL  260 (496)
Q Consensus       188 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~  260 (496)
                      .++++.+.. +-+......+...|.+.|++++|.+++..+. +.+..++.       .+|..++.......+.+...+++
T Consensus       175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~-k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMA-KAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            777777654 2245666677777777777777777777776 33332211       13334444444455556666666


Q ss_pred             HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010994          261 KKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY  340 (496)
Q Consensus       261 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  340 (496)
                      +.+...- +.++.....+...+...|+.++|.++++......  ++..  ..++.+....++.+++.+..+...+.. +-
T Consensus       253 ~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~--~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~  326 (398)
T PRK10747        253 KNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQ--YDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GD  326 (398)
T ss_pred             HhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence            6653322 3566677777888888888888888887666532  3331  122334445588888888888887763 23


Q ss_pred             CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          341 DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      |......+...+.+.|++++|.+.|+.+.+.  .|+...+..+...+.+.|+.++|.++|++.+.
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            5556777888888888888888888888875  47777888888888888888888888888765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.67  E-value=1.5e-12  Score=123.31  Aligned_cols=347  Identities=15%  Similarity=0.127  Sum_probs=269.3

Q ss_pred             HhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHH
Q 010994          109 GRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD  187 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~  187 (496)
                      ...|++++|..++.++....| +...|.+|...|-..|+.+++...+-..-..+.. |...|..+.....+.|+++.|.-
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHH
Confidence            344999999999999999887 6889999999999999999999988776665433 78999999999999999999999


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHH----HHHHHhcCChHHHHHHHHHH
Q 010994          188 VLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASA----AHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       188 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l----i~~~~~~~~~~~a~~~~~~m  263 (496)
                      .|.+.++.. +++...+-.-...|-+.|+...|..-|.++. ...++.|+.-+..+    +..+...++.+.|.+.++..
T Consensus       229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~-~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~  306 (895)
T KOG2076|consen  229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLL-QLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGA  306 (895)
T ss_pred             HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHH-hhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            999999874 3455555566778899999999999999998 66554555544444    45666778889999998877


Q ss_pred             HHh-cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----------------------CCCchhHH----HHHHH
Q 010994          264 EER-LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK----------------------RYINRDYI----TMLEA  316 (496)
Q Consensus       264 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----------------------~~~~~~~~----~l~~~  316 (496)
                      ... +-..+...++.++..+.+...++.+......+.....                      .++...|.    -++-+
T Consensus       307 ~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ic  386 (895)
T KOG2076|consen  307 LSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMIC  386 (895)
T ss_pred             HhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhh
Confidence            552 2335667889999999999999999988876665111                      12222221    23334


Q ss_pred             HHhcCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994          317 LMKLGEHEEAEKVLKEWELSG--NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE  394 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  394 (496)
                      +.+.+..+....+.....+..  +.-++..|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.++
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            455566666666666666665  344567888999999999999999999999998766667889999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHh---------cCCCCHHHHHHHHHHHHhC
Q 010994          395 RGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRT---------VIPMNRQMYHAFIKANIRN  464 (496)
Q Consensus       395 ~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~  464 (496)
                      .|.+.|++++.       ..|+ ...-.+|...+.+.|+.++|.+++..+..         ..+|+..........|.+.
T Consensus       467 ~A~e~y~kvl~-------~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~  539 (895)
T KOG2076|consen  467 EAIEFYEKVLI-------LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV  539 (895)
T ss_pred             HHHHHHHHHHh-------cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence            99999999997       5554 45777788889999999999999987542         1345555555666677777


Q ss_pred             C
Q 010994          465 G  465 (496)
Q Consensus       465 g  465 (496)
                      |
T Consensus       540 g  540 (895)
T KOG2076|consen  540 G  540 (895)
T ss_pred             h
Confidence            7

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.67  E-value=6.7e-16  Score=137.31  Aligned_cols=259  Identities=17%  Similarity=0.098  Sum_probs=95.7

Q ss_pred             hhHHHhhcCHHHHHHHHHhc-hhc-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC
Q 010994          105 LDLIGRVHGFLSAESYFSNL-KDD-EK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ  181 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~-~~~-~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~  181 (496)
                      ...+.+.|+++.|.++++.. ... +| |...|..+.......++++.|...++++...+.. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            44455556666666666432 222 23 4556666666777777888888888877766443 55566666666 67778


Q ss_pred             CCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010994          182 YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK  261 (496)
Q Consensus       182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  261 (496)
                      +++|.+++....+..  ++...+...+..+.+.++++.+..+++.+......+.+...|..+...+.+.|+.++|.+.++
T Consensus        93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            888877777665542  455566667777777788888888887766344444667777777777888888888888888


Q ss_pred             HHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010994          262 KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD  341 (496)
Q Consensus       262 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  341 (496)
                      +..+..+ .|......++..+...|+.+++.++++......+ .+...+..+..++...|+.++|..++++..+.. +.|
T Consensus       171 ~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~-~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d  247 (280)
T PF13429_consen  171 KALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAAP-DDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD  247 (280)
T ss_dssp             HHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H-TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred             HHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc-CHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence            8776543 4566677777777788888877777776555543 555667777788888888888888888877753 336


Q ss_pred             cccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994          342 TRIPNAVIIGYCNNGLVQNAEAILEDLVE  370 (496)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (496)
                      +.....+..++...|+.++|..+.+++.+
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccc
Confidence            66777777888888888888877766543

>TIGR00540 hemY_coli hemY protein

Probab=99.66  E-value=4.8e-13  Score=125.21  Aligned_cols=295  Identities=11%  Similarity=0.039  Sum_probs=212.0

Q ss_pred             HHHhhcCHHHHHHHHHhchhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcH
Q 010994          107 LIGRVHGFLSAESYFSNLKDDEKTY-QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV  185 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a  185 (496)
                      .....|+++.|.+.+.+..+..|+. ..+-....+..+.|+++.|.+.+++..+....++....-.....+...|+++.|
T Consensus        93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            3446789999999998888777753 344455677888899999999999887653222223444457888889999999


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHH-HHH---HHHHhcCChHHHHHHHH
Q 010994          186 PDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYA-SAA---HFYIKANLIDKASDVLK  261 (496)
Q Consensus       186 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~li---~~~~~~~~~~~a~~~~~  261 (496)
                      ...++.+.+... -+...+..+...+...|++++|.+.+..+. +.++ ++...+. .-.   ......+..++..+.+.
T Consensus       173 l~~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~-k~~~-~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       173 RHGVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMA-KAGL-FDDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HcCC-CCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999988742 255678888899999999999999999998 6655 3433332 111   12233333343444555


Q ss_pred             HHHHhccc---CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhH-HHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010994          262 KAEERLEQ---KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDY-ITMLEALMKLGEHEEAEKVLKEWELSG  337 (496)
Q Consensus       262 ~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (496)
                      .+.+..+.   .+...+..+...+...|+.++|.++++...+..+......+ ..........++.+.+.+.++...+..
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~  329 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV  329 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence            55544332   37788888999999999999999999988886652222211 112222234577888999998888763


Q ss_pred             CCCCc--ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          338 NSYDT--RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       338 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                       +-|+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++.+.
T Consensus       330 -p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       330 -DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             -CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             2234  456688999999999999999999655444568888899999999999999999999999865

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.66  E-value=3.9e-11  Score=109.92  Aligned_cols=403  Identities=11%  Similarity=0.061  Sum_probs=272.4

Q ss_pred             cCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCC-CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHH
Q 010994           56 NGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQT  133 (496)
Q Consensus        56 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~  133 (496)
                      .|...+...|-.=...|-+.|..-.+..+....+.-|+.. -...++..-.+.|.+.+.++-|..+|..+.+..| +...
T Consensus       473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~sl  552 (913)
T KOG0495|consen  473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSL  552 (913)
T ss_pred             cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHH
Confidence            3566666666666666666666666666666666555211 0112333345666677777777777777777666 4666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 010994          134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA  213 (496)
Q Consensus       134 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  213 (496)
                      |...+..=-..|..++-..+|++.... ++-....|-.....+-..|+...|..++.+..+... .+...|...+.....
T Consensus       553 Wlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~e  630 (913)
T KOG0495|consen  553 WLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEFE  630 (913)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhhc
Confidence            776666666677777777777777665 333455565566666677777778777777776532 256667777777777


Q ss_pred             cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHH
Q 010994          214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR  293 (496)
Q Consensus       214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  293 (496)
                      +.+++.|..+|.+.. .  ..|+..+|.--+..---.++.++|.+++++..+.-+ .=...|..+.+.+-+.++.+.|..
T Consensus       631 n~e~eraR~llakar-~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp-~f~Kl~lmlGQi~e~~~~ie~aR~  706 (913)
T KOG0495|consen  631 NDELERARDLLAKAR-S--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFP-DFHKLWLMLGQIEEQMENIEMARE  706 (913)
T ss_pred             cccHHHHHHHHHHHh-c--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCC-chHHHHHHHhHHHHHHHHHHHHHH
Confidence            778888888877776 2  225555555555555556777778877777666422 223456666777777777777777


Q ss_pred             HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994          294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK  373 (496)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (496)
                      .|..-...++ .....|..+...=-+.|.+-.|..+++...-++++ +...|-..|.+-.+.|+.+.|..++.+.++. +
T Consensus       707 aY~~G~k~cP-~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-c  783 (913)
T KOG0495|consen  707 AYLQGTKKCP-NSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-C  783 (913)
T ss_pred             HHHhccccCC-CCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-C
Confidence            7765544444 44456666666666777777788888777766433 6677777777777788888887777777665 3


Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994          374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM  453 (496)
Q Consensus       374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  453 (496)
                      +-+...|..-|....+.++-......+++          ..-|+.+...+...+....+++.|.+.|.+..+..+.+-.+
T Consensus       784 p~sg~LWaEaI~le~~~~rkTks~DALkk----------ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~  853 (913)
T KOG0495|consen  784 PSSGLLWAEAIWLEPRPQRKTKSIDALKK----------CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDA  853 (913)
T ss_pred             CccchhHHHHHHhccCcccchHHHHHHHh----------ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchH
Confidence            33556677777766666665555544444          44577778888888888899999999999998888888889


Q ss_pred             HHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994          454 YHAFIKANIRNG--KGVDELLDSMKA  477 (496)
Q Consensus       454 ~~~l~~~~~~~g--~~a~~~~~~m~~  477 (496)
                      |.-+...+.++|  +.-.+++.....
T Consensus       854 wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  854 WAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            999999999999  555667766554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.65  E-value=6.4e-14  Score=128.31  Aligned_cols=286  Identities=10%  Similarity=0.052  Sum_probs=221.5

Q ss_pred             CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChHHHHHH
Q 010994          181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHI-VLDWSTYASAAHFYIKANLIDKASDV  259 (496)
Q Consensus       181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~  259 (496)
                      +..+|...|.....+ +.-+..+...+.++|...+++++|.++|+.+...... .-+...|.+.+..+-+.    -++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            457888888886554 3334466677889999999999999999998722221 24677888877665432    23333


Q ss_pred             HH-HHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010994          260 LK-KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN  338 (496)
Q Consensus       260 ~~-~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  338 (496)
                      +- .+.+ .-+..+.+|-++..+|.-+++.+.|++.|++..+..+ ....+|+.+..-+....++|.|...|+.......
T Consensus       409 Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            32 2333 2346678999999999999999999999998877655 5678899888888999999999999998876421


Q ss_pred             CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CH
Q 010994          339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DP  417 (496)
Q Consensus       339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~  417 (496)
                       .+...|-.+.-.|.+.++++.|+-.|+++.+-++. +.+....+...+.+.|+.|+|+++++++..       +.| |+
T Consensus       487 -rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~-------ld~kn~  557 (638)
T KOG1126|consen  487 -RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIH-------LDPKNP  557 (638)
T ss_pred             -hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHh-------cCCCCc
Confidence             13344555677899999999999999999998776 778888889999999999999999999987       333 44


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCC
Q 010994          418 KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDE  482 (496)
Q Consensus       418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p  482 (496)
                      ..--.....+...+++++|...+++++...|.+...|..++..|.+.|  +.|+.-|--|.+..-++
T Consensus       558 l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  558 LCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             hhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            444445566777899999999999999999999999999999999999  67777777776644333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.65  E-value=1.9e-12  Score=114.34  Aligned_cols=398  Identities=11%  Similarity=0.014  Sum_probs=249.7

Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHhCCCCCCC-cchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHH
Q 010994           65 LQRIIRDLRKRKRFSQALEVSDWMNRKGICVFA-PCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYV  142 (496)
Q Consensus        65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~  142 (496)
                      +-..-.-|.+.|.+++|++.|.+.+...   ++ |.-+.....+|...|+|+...+.-....+.+|+ +..+..-..++-
T Consensus       118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~---p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  118 LKTKGNKFFRNKKYDEAIKYYTQAIELC---PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHhhhhhhhhcccHHHHHHHHHHHHhcC---CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            3445556788999999999999999976   34 667777788899999999999999999998887 667777888888


Q ss_pred             hcCCHHHHHHHHHHHH-HCCCCCChhHHHHHHHHHHhcCCCCcHHHHHH-HHHHCC--CCCChhhHHHHHHHHhh-----
Q 010994          143 RQRQTDKALSHFRKMK-EMGIALSTLTYNDIMCLYSKTGQYEKVPDVLT-EMKAKN--IFPDNFSYRICINSYGA-----  213 (496)
Q Consensus       143 ~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~-~m~~~~--~~p~~~~~~~li~~~~~-----  213 (496)
                      ..|++++|+.=+.-.. -.|+. |..+--.+=+.+-+     .|..-.+ .+.+++  +-|+.....+....+-.     
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~  268 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL  268 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence            8899888865332221 11111 11111100011110     0111111 111111  22222222222111110     


Q ss_pred             --------------------cC---ChHHHHHHHHHhhcCCCCCCC-----------HHHHHHHHHHHHhcCChHHHHHH
Q 010994          214 --------------------RS---DLEGMEIILREMESQPHIVLD-----------WSTYASAAHFYIKANLIDKASDV  259 (496)
Q Consensus       214 --------------------~~---~~~~a~~~~~~~~~~~~~~~~-----------~~~~~~li~~~~~~~~~~~a~~~  259 (496)
                                          .+   .+..|...+.+-.......++           ..+...-...+.-.|+.-.|..-
T Consensus       269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d  348 (606)
T KOG0547|consen  269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED  348 (606)
T ss_pred             ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence                                00   122222222221101111111           11111122233446788888888


Q ss_pred             HHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010994          260 LKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS  339 (496)
Q Consensus       260 ~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  339 (496)
                      |+..+...+. +...|--+..+|....+.++.++.|.......+ .+..+|.--...+.-.+++++|..=|++.....+.
T Consensus       349 ~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp-~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe  426 (606)
T KOG0547|consen  349 FDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP-ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE  426 (606)
T ss_pred             HHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC-CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh
Confidence            8888775543 333377777888888899999999987776665 66677777777777788889999888888776422


Q ss_pred             CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH--
Q 010994          340 YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP--  417 (496)
Q Consensus       340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--  417 (496)
                       +...|..+..+.-+.+++++++..|++.+++-+. -+..|+.....+..++++++|.+.|+.+++..-...++-.+.  
T Consensus       427 -~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~p  504 (606)
T KOG0547|consen  427 -NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAP  504 (606)
T ss_pred             -hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchh
Confidence             4555666666666888899999999988887433 667888888999999999999999999887211111111111  


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994          418 KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK  476 (496)
Q Consensus       418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~  476 (496)
                      .+.-.++ .+.-.+++..|..++++..+..|.....|..|...-.+.|  ++|+++|++-.
T Consensus       505 lV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  505 LVHKALL-VLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             hhhhhHh-hhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            2222222 2224488889999999888877888888999998888888  88888887654

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.63  E-value=2.9e-12  Score=112.14  Aligned_cols=350  Identities=13%  Similarity=0.080  Sum_probs=254.0

Q ss_pred             HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhh----hhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhc
Q 010994           69 IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAV----QLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQ  144 (496)
Q Consensus        69 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~  144 (496)
                      -..+.+.+.+.+|++.|+....+- .+++.+.-..    +...+.+.|+++.|+.-|+...+..||..+--.|+-++..-
T Consensus       244 gni~~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i  322 (840)
T KOG2003|consen  244 GNIHFKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAI  322 (840)
T ss_pred             cceeeehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheec
Confidence            345667788999999999988875 2233333222    23456689999999999999999999966544555566667


Q ss_pred             CCHHHHHHHHHHHHHCCCCC------------ChhHHHHH----------------------------------------
Q 010994          145 RQTDKALSHFRKMKEMGIAL------------STLTYNDI----------------------------------------  172 (496)
Q Consensus       145 g~~~~A~~~~~~m~~~g~~p------------~~~~~~~l----------------------------------------  172 (496)
                      |+-++..+.|..|..--..|            +....+.-                                        
T Consensus       323 ~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~  402 (840)
T KOG2003|consen  323 GDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGC  402 (840)
T ss_pred             CcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhccc
Confidence            89999999999886542222            21111111                                        


Q ss_pred             -----------------------HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH----------------------
Q 010994          173 -----------------------MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC----------------------  207 (496)
Q Consensus       173 -----------------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----------------------  207 (496)
                                             ..-+.++|+++.|.+++.-+.+...+.-...-+.|                      
T Consensus       403 dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~a  482 (840)
T KOG2003|consen  403 DWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIA  482 (840)
T ss_pred             HHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHH
Confidence                                   11466778999999988877654322111111100                      


Q ss_pred             --------------HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccc
Q 010994          208 --------------INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGI  273 (496)
Q Consensus       208 --------------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  273 (496)
                                    .+....+|++++|...+++.. ..+..-....|| +.-.+-..|++++|++.|-++... ...+..
T Consensus       483 ln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal-~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~e  559 (840)
T KOG2003|consen  483 LNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL-NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAE  559 (840)
T ss_pred             hcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH-cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHH
Confidence                          011123678899999998887 433312222233 445677889999999999887653 336677


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994          274 GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC  353 (496)
Q Consensus       274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  353 (496)
                      +...+...|-...+...|++++-+.....+ .|+...+.+...|-+.|+-.+|.+.+-+--+- ++.+..+...|..-|.
T Consensus       560 vl~qianiye~led~aqaie~~~q~~slip-~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyi  637 (840)
T KOG2003|consen  560 VLVQIANIYELLEDPAQAIELLMQANSLIP-NDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYI  637 (840)
T ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHhcccCC-CCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHH
Confidence            788888999999999999999986655444 67788999999999999999999887655443 4567888888998899


Q ss_pred             hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH-hcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC
Q 010994          354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF-DAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS  432 (496)
Q Consensus       354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  432 (496)
                      ...-+++++.+|++..-  +.|+..-|..|+..|. +.|++.+|+++|+....      .++-|...+..|++.+...|-
T Consensus       638 dtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr------kfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  638 DTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR------KFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             hhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH------hCccchHHHHHHHHHhccccc
Confidence            99999999999998754  5799999999998776 57999999999999886      777888888888888877664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=8.9e-14  Score=127.37  Aligned_cols=285  Identities=13%  Similarity=0.048  Sum_probs=161.5

Q ss_pred             ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 010994           77 RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK----TYQTYGALLNCYVRQRQTDKALS  152 (496)
Q Consensus        77 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~  152 (496)
                      +..+|+..|..+.+..  ..+......+...|...+++++|.++|+.+....|    +..+|.+.+-.+-+    +-++.
T Consensus       334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls  407 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS  407 (638)
T ss_pred             HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence            3456666666644433  23344555556666666777777777776666654    45566655544322    11222


Q ss_pred             HH-HHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCChHHHHHHHHHhhcC
Q 010994          153 HF-RKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP-DNFSYRICINSYGARSDLEGMEIILREMESQ  230 (496)
Q Consensus       153 ~~-~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  230 (496)
                      .+ +.+.+.. +-.+.+|.++.++|.-+++.+.|++.|++..+.  .| ...+|+.+..-+.....+|.|...|+... .
T Consensus       408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al-~  483 (638)
T KOG1126|consen  408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKAL-G  483 (638)
T ss_pred             HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhh-c
Confidence            22 2222221 225666777777776666777777766666653  33 45566666666666666666666666665 3


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhH
Q 010994          231 PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDY  310 (496)
Q Consensus       231 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  310 (496)
                      .+. -+..+|.-+...|.+.++++.|+-.|+...+.++ .+.+....+...+.+.|+.++|+++++++....+ .++..-
T Consensus       484 ~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~  560 (638)
T KOG1126|consen  484 VDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCK  560 (638)
T ss_pred             CCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhH
Confidence            222 2333344455666666667777666666655443 4555555666666666666677766666655554 333333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT  375 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p  375 (496)
                      .-.+..+...+++++|...++++++.- +-+..++..+...|.+.|+.+.|+.-|--+.+.++++
T Consensus       561 ~~~~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg  624 (638)
T KOG1126|consen  561 YHRASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG  624 (638)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence            334455555666666666666666542 2244555666666666666666666666666554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.62  E-value=6.1e-12  Score=108.69  Aligned_cols=286  Identities=13%  Similarity=0.073  Sum_probs=219.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 010994          144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEII  223 (496)
Q Consensus       144 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  223 (496)
                      .|+|.+|.++..+-.+.+-. ....|..-+.+.-..|+.+.+-.++.+..+....++...+-+..+.....|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            58899999888887776544 34456666677778888888988888888764455666677777888888888888888


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc-------chHHHHHHHHHhcCCHHHHHHHHH
Q 010994          224 LREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG-------IGYNFLISLYASLGNKSEVLRLWD  296 (496)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~  296 (496)
                      +.++. +.+. -+.........+|.+.|++.....++..+.+.+.-.+.       .+|..+++-....+..+.-...|+
T Consensus       176 v~~ll-~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         176 VDQLL-EMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHH-HhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            88887 5554 56677788888999999999999999988877764443       467777777777766666666776


Q ss_pred             HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC
Q 010994          297 LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT  376 (496)
Q Consensus       297 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  376 (496)
                      ..-. ..+.++..-.+++.-+.++|+.++|.++..+..+.+..|+   . ...-.+.+-++.+.-.+..++-.+..+. +
T Consensus       254 ~~pr-~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~  327 (400)
T COG3071         254 NQPR-KLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPE-D  327 (400)
T ss_pred             hccH-HhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence            4333 2346667777888888999999999999999988877665   1 2222345677777777777776655433 5


Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      +..+.++...|.+.+.|.+|...|+.+++       ..|+..+|+.+..++.+.|+.++|.++.++...
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~-------~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALK-------LRPSASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHh-------cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            57888999999999999999999998875       889999999999999999999999998886543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=7.3e-12  Score=104.96  Aligned_cols=286  Identities=15%  Similarity=0.183  Sum_probs=152.0

Q ss_pred             CCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHH--HHHHHHHHHHhcCChHHHH
Q 010994          180 GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWS--TYASAAHFYIKANLIDKAS  257 (496)
Q Consensus       180 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~  257 (496)
                      ++.++|.++|-+|.+.. +-+..+-.+|.+.|.+.|..|.|+++.+.+...++...+..  +.-.|..-|...|-+|.|+
T Consensus        49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            44555555555555421 11222333445555555555555555555552333211111  1223445555566666666


Q ss_pred             HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994          258 DVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN----RDYITMLEALMKLGEHEEAEKVLKEW  333 (496)
Q Consensus       258 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~  333 (496)
                      .+|..+.+.+. .-....-.++..|-...+|++|+++-++....++.+..    ..|.-+...+....+.+.|..++.+.
T Consensus       128 ~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            66665554321 23344555566666666666666666555544442221    22444555555566677777777776


Q ss_pred             HhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC
Q 010994          334 ELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW  413 (496)
Q Consensus       334 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  413 (496)
                      .+.+.+ .+..--.+.+.+...|+++.|.+.++...+.++.--..+...|..+|.+.|+.++...++.++.+       .
T Consensus       207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-------~  278 (389)
T COG2956         207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-------T  278 (389)
T ss_pred             HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------c
Confidence            665322 34444455666677777777777777777765544455666777777777777777777777765       2


Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHH-HHHHhcCCCCHHHHHHHHHHHHhCC-----CcHHHHHHHHHh
Q 010994          414 KPDPKVITSILSKLGDEGSVQDVEAFV-AALRTVIPMNRQMYHAFIKANIRNG-----KGVDELLDSMKA  477 (496)
Q Consensus       414 ~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g-----~~a~~~~~~m~~  477 (496)
                      .++...-..+...-....-.+.|..++ +.+..  .|+...+..+++.-...+     .+.+.+++.|..
T Consensus       279 ~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         279 NTGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            333333333333333333344444433 34443  566777767766655544     233445555553

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=3.5e-11  Score=105.83  Aligned_cols=305  Identities=9%  Similarity=0.064  Sum_probs=205.5

Q ss_pred             HHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-C-CCHHHHHHHHHHHHhcC
Q 010994          174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHI-V-LDWSTYASAAHFYIKAN  251 (496)
Q Consensus       174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~~li~~~~~~~  251 (496)
                      .++......+++..-.+.....|+.-+...-+....+.-...|+|.|+.+|+++. +.++ . .|..+|+.++-.  +..
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~-knDPYRl~dmdlySN~LYv--~~~  311 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIR-KNDPYRLDDMDLYSNVLYV--KND  311 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHH-hcCCCcchhHHHHhHHHHH--Hhh
Confidence            3444555666777777777777765555444445555666778888888888887 3322 1 355666655533  222


Q ss_pred             ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010994          252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLK  331 (496)
Q Consensus       252 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  331 (496)
                      +-  .+..+-+-.-..-+--+.|...+.+-|.-.++.++|..+|+...+..+ .....|+.+..-|....+...|.+-++
T Consensus       312 ~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  312 KS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             hH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHH
Confidence            11  111221111112234456777778888888889999999998887765 556778888888999999999999999


Q ss_pred             HHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994          332 EWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK  411 (496)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  411 (496)
                      ...+.. +.|-..|-.+.++|.-.+...-|+-.|++..+..+. |...|.+|..+|.+.++.++|+.+|.+++.      
T Consensus       389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~------  460 (559)
T KOG1155|consen  389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL------  460 (559)
T ss_pred             HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh------
Confidence            988875 448888889999999999999999999998887554 888999999999999999999999999887      


Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc----CCCCH---HHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCC
Q 010994          412 GWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV----IPMNR---QMYHAFIKANIRNG--KGVDELLDSMKADGIDE  482 (496)
Q Consensus       412 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p  482 (496)
                      .-..+...+..|...+-+.++.++|.+.+++..+.    ...+.   ..---|..-+.+.+  ++|......... | .+
T Consensus       461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~-~-~~  538 (559)
T KOG1155|consen  461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK-G-ET  538 (559)
T ss_pred             ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc-C-Cc
Confidence            33446678888999999999999998888866552    11222   22222344444555  555554444333 2 44


Q ss_pred             ChhHHHHHHhhh
Q 010994          483 DEETKEILVCTM  494 (496)
Q Consensus       483 ~~~t~~~l~~~~  494 (496)
                      .-.--+.|++.+
T Consensus       539 e~eeak~LlRei  550 (559)
T KOG1155|consen  539 ECEEAKALLREI  550 (559)
T ss_pred             hHHHHHHHHHHH
Confidence            444445555443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.58  E-value=5.8e-10  Score=102.42  Aligned_cols=384  Identities=11%  Similarity=0.054  Sum_probs=298.9

Q ss_pred             hccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010994           74 KRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALS  152 (496)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~  152 (496)
                      .....+.|.-++....+--     | ....+.-.+.+..-++.|..+++++.+.-| +..+|-+-...=-.+|+.+...+
T Consensus       388 elE~~~darilL~rAvecc-----p-~s~dLwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~k  461 (913)
T KOG0495|consen  388 ELEEPEDARILLERAVECC-----P-QSMDLWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEK  461 (913)
T ss_pred             hccChHHHHHHHHHHHHhc-----c-chHHHHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHH
Confidence            3344555666666555532     1 122234566778888999999999988766 68888887777788899999888


Q ss_pred             HHHH----HHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC--hhhHHHHHHHHhhcCChHHHHHHHHH
Q 010994          153 HFRK----MKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD--NFSYRICINSYGARSDLEGMEIILRE  226 (496)
Q Consensus       153 ~~~~----m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~  226 (496)
                      ++++    +...|+..+...|-.=...|-..|..-.+..+....+.-|+.-.  ..||..-...|.+.+.++-|..+|..
T Consensus       462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~  541 (913)
T KOG0495|consen  462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH  541 (913)
T ss_pred             HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence            8765    45678889999999999999999988888888888887776532  45788888899999999999999988


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 010994          227 MESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI  306 (496)
Q Consensus       227 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  306 (496)
                      .. +..+ -+...|......=-..|..+....+|++....- +.....|-.....+-..|++..|..++....+..+ .+
T Consensus       542 al-qvfp-~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-ns  617 (913)
T KOG0495|consen  542 AL-QVFP-CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NS  617 (913)
T ss_pred             HH-hhcc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-Cc
Confidence            87 4433 556667777766677899999999999988754 35566777778888889999999999998888776 47


Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC-HhHHHHHHH
Q 010994          307 NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT-PNSWAVVAA  385 (496)
Q Consensus       307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~  385 (496)
                      ...|..-+..-....+++.|..+|.+....  .|+..+|..-+...--.++.++|.+++++.++.-  |+ ...|-.+.+
T Consensus       618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~lmlGQ  693 (913)
T KOG0495|consen  618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWLMLGQ  693 (913)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHHHHhH
Confidence            788888888889999999999999988775  5677777776666667889999999999888753  34 457888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          386 GYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      .+-+.++.+.|.+.|..-.+      ..+-....|..+...=-+.|.+-.|..++++..-..|.+...|-..|+.-.+.|
T Consensus       694 i~e~~~~ie~aR~aY~~G~k------~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~g  767 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTK------KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAG  767 (913)
T ss_pred             HHHHHHHHHHHHHHHHhccc------cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcC
Confidence            88888898888888877554      333345677777777788889999999999888888999999999999999999


Q ss_pred             --CcHHHHHHHHHh
Q 010994          466 --KGVDELLDSMKA  477 (496)
Q Consensus       466 --~~a~~~~~~m~~  477 (496)
                        +.|..+..+..+
T Consensus       768 n~~~a~~lmakALQ  781 (913)
T KOG0495|consen  768 NKEQAELLMAKALQ  781 (913)
T ss_pred             CHHHHHHHHHHHHH
Confidence              566655554443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.56  E-value=2.5e-11  Score=105.00  Aligned_cols=291  Identities=12%  Similarity=0.064  Sum_probs=232.7

Q ss_pred             hcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010994          178 KTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKAS  257 (496)
Q Consensus       178 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  257 (496)
                      -.|+|.+|+++..+-.+++-.|- ..|..-..+--..||.+.+-.++.+.. +....++...+-+........|+.+.|.
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p~-l~~l~aA~AA~qrgd~~~an~yL~eaa-e~~~~~~l~v~ltrarlll~~~d~~aA~  173 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQPV-LAYLLAAEAAQQRGDEDRANRYLAEAA-ELAGDDTLAVELTRARLLLNRRDYPAAR  173 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcchH-HHHHHHHHHHHhcccHHHHHHHHHHHh-ccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence            35999999999999888776543 456677788889999999999999998 5533477788888889999999999999


Q ss_pred             HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-------hhHHHHHHHHHhcCCHHHHHHHH
Q 010994          258 DVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN-------RDYITMLEALMKLGEHEEAEKVL  330 (496)
Q Consensus       258 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~  330 (496)
                      .-++++.+.++ .++.......++|.+.|++.....++..+.+.+.-.+.       .+|..+++-....+..+.-...+
T Consensus       174 ~~v~~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W  252 (400)
T COG3071         174 ENVDQLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW  252 (400)
T ss_pred             HHHHHHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            99999988775 66788899999999999999999999999888774443       34666666666666666655566


Q ss_pred             HHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcC
Q 010994          331 KEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEG  410 (496)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  410 (496)
                      +..... .+.++..-.+++.-+.++|+.++|.++..+..+++..|+    -.....+.+-++.+.-++..++-.+     
T Consensus       253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~-----  322 (400)
T COG3071         253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLK-----  322 (400)
T ss_pred             HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHH-----
Confidence            655443 355677778899999999999999999999999877765    2334456778888888888888776     


Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCC
Q 010994          411 KGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDED  483 (496)
Q Consensus       411 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~  483 (496)
                       ..+-++..+.+|...|.+.+.|.+|...|+...+ ..|+..+|+.+.+++.+.|  .+|.++.++....-..|+
T Consensus       323 -~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~-~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         323 -QHPEDPLLLSTLGRLALKNKLWGKASEALEAALK-LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             -hCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence             3444457888999999999999999999995554 6799999999999999999  688888887665444444

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.55  E-value=3.2e-11  Score=101.21  Aligned_cols=286  Identities=14%  Similarity=0.099  Sum_probs=215.0

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCh------hhHHHHHHHHhhcCCh
Q 010994          144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDN------FSYRICINSYGARSDL  217 (496)
Q Consensus       144 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~~~~  217 (496)
                      +.+.++|.++|-+|.+.... +..+.-+|.+.|.+.|..+.|+.+.+.+.++   ||.      .....|..-|...|-+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             hcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            58899999999999886322 5556678889999999999999999998875   332      2344566778889999


Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc----chHHHHHHHHHhcCCHHHHHH
Q 010994          218 EGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG----IGYNFLISLYASLGNKSEVLR  293 (496)
Q Consensus       218 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~  293 (496)
                      |.|+.+|..+. +.+. .-..+...|+..|-...+|++|+++-+++...+..+..    ..|.-+...+....+.+.|..
T Consensus       124 DRAE~~f~~L~-de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~  201 (389)
T COG2956         124 DRAEDIFNQLV-DEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE  201 (389)
T ss_pred             hHHHHHHHHHh-cchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            99999999998 5333 34556677999999999999999999998877665543    235556666667889999999


Q ss_pred             HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994          294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK  373 (496)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (496)
                      ++.+..+..+ ..+..-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|.+.|+.++....+.++.+...
T Consensus       202 ~l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~  280 (389)
T COG2956         202 LLKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT  280 (389)
T ss_pred             HHHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            9998888766 556666678888999999999999999999986555566778899999999999999999999888654


Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHh
Q 010994          374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE---GSVQDVEAFVAALRT  445 (496)
Q Consensus       374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~  445 (496)
                      .++.  -..+...-....-.+.|...+.+-+.       -+|+...+..++..-...   |...+-...++.|..
T Consensus       281 g~~~--~l~l~~lie~~~G~~~Aq~~l~~Ql~-------r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         281 GADA--ELMLADLIELQEGIDAAQAYLTRQLR-------RKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             CccH--HHHHHHHHHHhhChHHHHHHHHHHHh-------hCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            4333  34444444444445666666655554       589999999999876433   344455555555544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.5e-10  Score=104.52  Aligned_cols=285  Identities=11%  Similarity=-0.026  Sum_probs=226.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994          130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN  209 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  209 (496)
                      ++.....-.+-+...+++.+..++.+...+. .+++...+..-|.++.+.|+..+-..+=.+|.+. .+-...+|-++..
T Consensus       243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~  320 (611)
T KOG1173|consen  243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC  320 (611)
T ss_pred             cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence            4455556667778889999999999999887 3456777777778899999999988888888886 3446788999998


Q ss_pred             HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 010994          210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS  289 (496)
Q Consensus       210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~  289 (496)
                      -|.-.|+..+|.++|.+.. ..+. .=...|-.....|+-.|.-|+|+..|....+.-+ -..-.+--+.--|.+.++.+
T Consensus       321 YYl~i~k~seARry~SKat-~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~-G~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  321 YYLMIGKYSEARRYFSKAT-TLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP-GCHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHhcCcHHHHHHHHHHh-hcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc-CCcchHHHHHHHHHHhccHH
Confidence            8888999999999998876 3332 1223455688899999999999999988766432 22223334455678899999


Q ss_pred             HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCC----CcccHHHHHHHHHhcCchhHHHH
Q 010994          290 EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSG--NSY----DTRIPNAVIIGYCNNGLVQNAEA  363 (496)
Q Consensus       290 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~a~~  363 (496)
                      .|.++|.......+ .|+...+-+.-.....+.+.+|..+|+.....-  ..+    -..+++.|..+|.+.+.+++|+.
T Consensus       398 LAe~Ff~~A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~  476 (611)
T KOG1173|consen  398 LAEKFFKQALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID  476 (611)
T ss_pred             HHHHHHHHHHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence            99999998888777 777888888888888899999999998877321  111    23457889999999999999999


Q ss_pred             HHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHh
Q 010994          364 ILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLG  428 (496)
Q Consensus       364 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~  428 (496)
                      .+++.+....+ |..++.++.-.|...|+++.|++.|.+++.       +.|+..+...++..+.
T Consensus       477 ~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~-------l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  477 YYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA-------LKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh-------cCCccHHHHHHHHHHH
Confidence            99999987665 899999999999999999999999999985       8999988888776543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.6e-08  Score=89.72  Aligned_cols=199  Identities=13%  Similarity=0.117  Sum_probs=120.6

Q ss_pred             CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch------hHHHHHHHH---HhcCCHHHHHHHHHHHHhcCCCC
Q 010994          270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR------DYITMLEAL---MKLGEHEEAEKVLKEWELSGNSY  340 (496)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~  340 (496)
                      .|-.+|-..+..-...|+.+...++|+......+.....      .|..+=.+|   ....+.+.+.++++...+. ++.
T Consensus       320 ~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPH  398 (677)
T KOG1915|consen  320 YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPH  398 (677)
T ss_pred             CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCc
Confidence            445566666666666777777777777666655422111      122121121   2356777777777777663 333


Q ss_pred             CcccHHHHHHHH----HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-
Q 010994          341 DTRIPNAVIIGY----CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-  415 (496)
Q Consensus       341 ~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-  415 (496)
                      ...||..+=-.|    .++.++..|.+++...+-  ..|-..+|...|..-.+.++++....+|++.++       ..| 
T Consensus       399 kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle-------~~Pe  469 (677)
T KOG1915|consen  399 KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE-------FSPE  469 (677)
T ss_pred             ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cChH
Confidence            444444333333    356677777777766553  456677777777777777778888888877776       444 


Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhC
Q 010994          416 DPKVITSILSKLGDEGSVQDVEAFVAALRTV--IPMNRQMYHAFIKANIRNG--KGVDELLDSMKAD  478 (496)
Q Consensus       416 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~  478 (496)
                      |..+|......=...|+.+.|..+|....+.  .......|.+.|+--...|  +.|..+++++.+.
T Consensus       470 ~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  470 NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            4466766666666777888888888766553  2223345555555555566  6777777777653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=7.3e-09  Score=91.80  Aligned_cols=406  Identities=9%  Similarity=0.021  Sum_probs=299.5

Q ss_pred             CCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHH
Q 010994           58 NKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGA  136 (496)
Q Consensus        58 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~  136 (496)
                      .+.+...|-....-=..++++..|..+|+..+....  -+.......+..=.+...+..|..+++++...-|- ...|-.
T Consensus        69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~--r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK  146 (677)
T KOG1915|consen   69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDY--RNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK  146 (677)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhccc--ccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH
Confidence            444555555555555667888999999999988652  22333333455566888899999999998887664 345666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994          137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD  216 (496)
Q Consensus       137 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~  216 (496)
                      .+..=-..|++..|.++|++-.+.  .|+...|++.|+.=.+-+.++.|..+|++.+-  +.|+..+|---.+.-.+.|+
T Consensus       147 Y~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~  222 (677)
T KOG1915|consen  147 YIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGN  222 (677)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence            666666779999999999998875  79999999999999999999999999999886  46999999988888889999


Q ss_pred             hHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc-cchHHHHHHHHHhcCCHHHHHHH
Q 010994          217 LEGMEIILREMESQPHI-VLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD-GIGYNFLISLYASLGNKSEVLRL  294 (496)
Q Consensus       217 ~~~a~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~  294 (496)
                      ...|.++|+......+- ..+...+.+....=.++..++.|.-+|+-..++.++.. ...|..+...=-+-|+.....+.
T Consensus       223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~  302 (677)
T KOG1915|consen  223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA  302 (677)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence            99999999887733221 12233344444444567788999999998888654322 23454444444455554443332


Q ss_pred             --------HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHH--------HHhcC
Q 010994          295 --------WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT--RIPNAVIIG--------YCNNG  356 (496)
Q Consensus       295 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~g  356 (496)
                              |+.+....+ .|-.+|--.++.-...|+.+...++++.....- +|-.  ..|...|-.        -....
T Consensus       303 Iv~KRk~qYE~~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~e  380 (677)
T KOG1915|consen  303 IVGKRKFQYEKEVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAE  380 (677)
T ss_pred             HhhhhhhHHHHHHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                    334444444 677788888888888999999999999998763 3321  112222211        12468


Q ss_pred             chhHHHHHHHHHHhcCCCCCHhHHH----HHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC
Q 010994          357 LVQNAEAILEDLVEKGKATTPNSWA----VVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS  432 (496)
Q Consensus       357 ~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  432 (496)
                      +.+.+.++|+..++. ++....||.    ....--.++.+...|.+++..++       |.-|-..+|...|..=.+.++
T Consensus       381 d~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI-------G~cPK~KlFk~YIelElqL~e  452 (677)
T KOG1915|consen  381 DVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI-------GKCPKDKLFKGYIELELQLRE  452 (677)
T ss_pred             hHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh-------ccCCchhHHHHHHHHHHHHhh
Confidence            899999999999884 332334444    34444557889999999999986       789999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCC
Q 010994          433 VQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADG  479 (496)
Q Consensus       433 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g  479 (496)
                      ++.+..++++...-.|.+..+|......-...|  +.|..+|.-..++.
T Consensus       453 fDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  453 FDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence            999999999999988889999998888888888  88999998887653

>PRK12370 invasion protein regulator; Provisional

Probab=99.46  E-value=6.1e-11  Score=115.45  Aligned_cols=266  Identities=11%  Similarity=-0.006  Sum_probs=175.9

Q ss_pred             ChhhHHHHHHHHhh-----cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh---------cCChHHHHHHHHHHHH
Q 010994          200 DNFSYRICINSYGA-----RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK---------ANLIDKASDVLKKAEE  265 (496)
Q Consensus       200 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~  265 (496)
                      +...|...+++-..     .+++++|...|++.. +.++ -+...|..+..+|..         .+++++|...+++..+
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al-~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCV-NMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            34445455554321     234678888898887 5543 345556656555442         2457889999998887


Q ss_pred             hcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 010994          266 RLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP  345 (496)
Q Consensus       266 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  345 (496)
                      ..+ .+..++..+...+...|++++|...|++.....+ .+...+..+..++...|++++|...+++..+..+. +...+
T Consensus       333 ldP-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~  409 (553)
T PRK12370        333 LDH-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG  409 (553)
T ss_pred             cCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence            654 5667788888888899999999999998888765 55667788888899999999999999998887433 22233


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHHHH
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK-VITSIL  424 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~l~  424 (496)
                      ..++..+...|++++|...++++.+...+-+...+..+...+...|+.++|...+.++..       ..|+.. ..+.+.
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~-------~~~~~~~~~~~l~  482 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST-------QEITGLIAVNLLY  482 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh-------ccchhHHHHHHHH
Confidence            344555667889999999998887654322455677788888899999999999988764       345443 344455


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHHHhCC
Q 010994          425 SKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDSMKADG  479 (496)
Q Consensus       425 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~m~~~g  479 (496)
                      ..+...|  +.|...++.+.+...........+-..|.-.| .+...+++++.+.|
T Consensus       483 ~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  536 (553)
T PRK12370        483 AEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMWNKFKNED  536 (553)
T ss_pred             HHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHHHHhhccc
Confidence            5566666  47777777665532111111111333444455 34445557777653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=9.5e-11  Score=101.72  Aligned_cols=200  Identities=16%  Similarity=0.094  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994          237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA  316 (496)
Q Consensus       237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  316 (496)
                      ...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|.+.++......+ .+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence            45555666677777777777777776655432 3445566666677777777777777776665544 344555666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994          317 LMKLGEHEEAEKVLKEWELSGNS-YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER  395 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  395 (496)
                      +...|++++|...++...+.... .....+..+...+...|++++|...+.+..+.... +...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence            67777777777777776653211 12334555666677777777777777777765433 45566677777777777777


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       396 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      |...++++..     . .+.+...+..+...+...|+.++|..+.+.+..
T Consensus       188 A~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQ-----T-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHH-----h-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            7777777766     2 233445555666666677777777777666544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.44  E-value=6.7e-11  Score=115.17  Aligned_cols=217  Identities=12%  Similarity=0.042  Sum_probs=112.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh---------cCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994          146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK---------TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD  216 (496)
Q Consensus       146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~  216 (496)
                      ++++|...|++..+.... +...|..+..++..         .+++++|...+++..+.+. -+...+..+...+...|+
T Consensus       276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP-~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH-NNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHccC
Confidence            456666666666554221 33344444433321         1234566666666665421 244555555556666666


Q ss_pred             hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 010994          217 LEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD  296 (496)
Q Consensus       217 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  296 (496)
                      +++|...|++.. +.++ .+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...++
T Consensus       354 ~~~A~~~~~~Al-~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        354 YIVGSLLFKQAN-LLSP-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             HHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            666666666665 4432 34455555666666666666666666666554432 22222333334455666666666666


Q ss_pred             HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994          297 LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE  370 (496)
Q Consensus       297 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (496)
                      .........+...+..+..++...|+.++|...+.++.... +.+....+.+...|+..|  +.|...++.+.+
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            55544321223344555556666666666666666654431 112223344444455555  355555555443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.44  E-value=1.4e-08  Score=93.31  Aligned_cols=424  Identities=11%  Similarity=0.096  Sum_probs=273.3

Q ss_pred             cccCCCcccHHhhhccCCCCCCCcHHHHHHHHHcCCC--CCh--hhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCc
Q 010994           23 YTNRINKTTLYSIISPLGNPGTRIEPELDNWVKNGNK--VRV--GELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAP   98 (496)
Q Consensus        23 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   98 (496)
                      +++...+..+..-+++..+...++  -++.+.+.|+.  +|.  ..|++|.+.|.+.|.+++|.++|++.++.-   .+.
T Consensus       207 kSn~qlw~elcdlis~~p~~~~sl--nvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v---~tv  281 (835)
T KOG2047|consen  207 KSNHQLWLELCDLISQNPDKVQSL--NVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV---MTV  281 (835)
T ss_pred             cchhhHHHHHHHHHHhCcchhccc--CHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh---eeh
Confidence            334444555555555544433322  23444444433  333  468999999999999999999999999875   566


Q ss_pred             chhhhhhhHHHhhcC----------------------HHHHHHHHHhchhc------------CC-CHHHHHHHHHHHHh
Q 010994           99 CDHAVQLDLIGRVHG----------------------FLSAESYFSNLKDD------------EK-TYQTYGALLNCYVR  143 (496)
Q Consensus        99 ~~~~~~~~~~~~~~~----------------------~~~A~~~~~~~~~~------------~~-~~~~~~~li~~~~~  143 (496)
                      ..++.+.+.|++...                      ++.....|+.+...            +| ++..|..-+..+  
T Consensus       282 rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--  359 (835)
T KOG2047|consen  282 RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--  359 (835)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhh--
Confidence            677776666653322                      23333444443322            23 455565555444  


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC------hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC---hhhHHHHHHHHhhc
Q 010994          144 QRQTDKALSHFRKMKEMGIALS------TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD---NFSYRICINSYGAR  214 (496)
Q Consensus       144 ~g~~~~A~~~~~~m~~~g~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~  214 (496)
                      .|+..+-...|.+..+. +.|.      ...|..+...|-..|+.+.|..+|++..+-..+--   ..+|..-...-.+.
T Consensus       360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            57788888888887664 3332      23588889999999999999999999887643321   34455555666677


Q ss_pred             CChHHHHHHHHHhhcCCC----------CCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994          215 SDLEGMEIILREMESQPH----------IVL------DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL  278 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~----------~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  278 (496)
                      .+++.|.++++....-+.          .++      +...|...++.--..|-++....+|+++.+..+ .++......
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri-aTPqii~Ny  517 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI-ATPQIIINY  517 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc-CCHHHHHHH
Confidence            888999998887751111          111      123344455555567888889999999887655 333333333


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCCc-hhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH-
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTACKRYIN-RDYITMLEALMK---LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC-  353 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-  353 (496)
                      ...+-.+.-++++.++|++-.....-|.. ..|+.-+.-+.+   ...++.|..+|++..+ |++|...  ..+.-.|+ 
T Consensus       518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~a--KtiyLlYA~  594 (835)
T KOG2047|consen  518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHA--KTIYLLYAK  594 (835)
T ss_pred             HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHH--HHHHHHHHH
Confidence            33445667788999999876666555555 345555554433   3468999999999998 5554432  22223333 


Q ss_pred             ---hcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH---HHH
Q 010994          354 ---NNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS---ILS  425 (496)
Q Consensus       354 ---~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~---l~~  425 (496)
                         +.|-...|+.++++.... +.+.  ...||..|.--...=-+.....+|+++++       .-|+...-..   ...
T Consensus       595 lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe-------~Lp~~~~r~mclrFAd  666 (835)
T KOG2047|consen  595 LEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE-------SLPDSKAREMCLRFAD  666 (835)
T ss_pred             HHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH-------hCChHHHHHHHHHHHH
Confidence               458888999999997654 3322  23678777665554445667788999987       4566654433   334


Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCCC
Q 010994          426 KLGDEGSVQDVEAFVAALRTVIPM--NRQMYHAFIKANIRNGK  466 (496)
Q Consensus       426 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~  466 (496)
                      .=++.|..+.|..++....+..+|  +...|.+.=.--.+.|+
T Consensus       667 lEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn  709 (835)
T KOG2047|consen  667 LETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN  709 (835)
T ss_pred             HhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC
Confidence            457889999999999987776555  45668888777888883

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.44  E-value=1e-08  Score=94.49  Aligned_cols=393  Identities=14%  Similarity=0.106  Sum_probs=221.9

Q ss_pred             HHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHH
Q 010994           72 LRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKA  150 (496)
Q Consensus        72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A  150 (496)
                      +...+++...+...+.+.+..  +-.++++..-.-.+...|+-++|..........++ +.+.|..+.-.+-...++++|
T Consensus        17 ~yE~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea   94 (700)
T KOG1156|consen   17 CYETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA   94 (700)
T ss_pred             HHHHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence            346667777777777777743  34555555555566667777777777766666554 566677776666667777777


Q ss_pred             HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcC
Q 010994          151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQ  230 (496)
Q Consensus       151 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~  230 (496)
                      ++.|......+.. |...|.-+.-.-++.++++.....-.++.+.. +.....|..+..++.-.|+...|..++++....
T Consensus        95 iKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t  172 (700)
T KOG1156|consen   95 IKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKT  172 (700)
T ss_pred             HHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            7777776665332 56666665555566666666666666655531 123344555666666666777777666666532


Q ss_pred             CCCCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 010994          231 PHIVLDWSTYASAA------HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR  304 (496)
Q Consensus       231 ~~~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  304 (496)
                      ....|+...|....      ....+.|..+.|.+.+.......+ .....-..-...+.+.++.++|..++.......+ 
T Consensus       173 ~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnP-  250 (700)
T KOG1156|consen  173 QNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLERNP-  250 (700)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCc-
Confidence            22335544443322      223345555555555554332211 1112222334445566666666666665554432 


Q ss_pred             CCchhHHHHHHHHHhcCCHHHHH-HHH----------------------------------HHHHhcCCCCCcccHHHHH
Q 010994          305 YINRDYITMLEALMKLGEHEEAE-KVL----------------------------------KEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~a~-~~~----------------------------------~~~~~~~~~~~~~~~~~l~  349 (496)
                      .+...|-.+..++.+..+..++. .+|                                  ....+.|+++   ++..+.
T Consensus       251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~  327 (700)
T KOG1156|consen  251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLR  327 (700)
T ss_pred             hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhH
Confidence            22222222333332222222222 333                                  3333333322   233333


Q ss_pred             HHHHhcCchhHHHHHHHHHHh----cC----------CCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC
Q 010994          350 IGYCNNGLVQNAEAILEDLVE----KG----------KATTPN--SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW  413 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~----~~----------~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  413 (496)
                      ..|-.-...+-..++.-.+..    .|          -+|...  ++-.++..+-..|+++.|..+++.++.       .
T Consensus       328 SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId-------H  400 (700)
T KOG1156|consen  328 SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID-------H  400 (700)
T ss_pred             HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc-------c
Confidence            333222222111111111111    11          134444  345677888999999999999999975       6


Q ss_pred             CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCC
Q 010994          414 KPDP-KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGI  480 (496)
Q Consensus       414 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~  480 (496)
                      .|+. ..|..-.+.+...|++++|..++++..+...+|...-.--..-..+.+  ++|..+.-.....|.
T Consensus       401 TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  401 TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            6765 466666788899999999999999998876677665545555566666  777777777766664

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.43  E-value=1.5e-10  Score=109.70  Aligned_cols=91  Identities=14%  Similarity=0.011  Sum_probs=60.0

Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhc
Q 010994           48 PELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD  127 (496)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  127 (496)
                      .++-.+...|+.|+..+|.++|..||..|+.+.|- +|..|.-+. .+.+...+...+......++.+.+.         
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk---------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK---------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC---------
Confidence            35667777899999999999999999999999998 888887766 3444444444444444444443332         


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHH
Q 010994          128 EKTYQTYGALLNCYVRQRQTDK  149 (496)
Q Consensus       128 ~~~~~~~~~li~~~~~~g~~~~  149 (496)
                      .|...+|..|..+|...||...
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHH
Confidence            2444555555555555555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.43  E-value=3.8e-11  Score=100.85  Aligned_cols=238  Identities=13%  Similarity=0.147  Sum_probs=187.8

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994          235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML  314 (496)
Q Consensus       235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  314 (496)
                      .|+.--+.+..+|.+.|.+.+|.+.|+.-.+.  .|-+.||..+-..|.+..+++.|+.++.+-....+ .++....-+.
T Consensus       221 ~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP-~~VT~l~g~A  297 (478)
T KOG1129|consen  221 LDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP-FDVTYLLGQA  297 (478)
T ss_pred             HhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC-chhhhhhhhH
Confidence            45555577888999999999999888877664  36667888888889999999999998887666544 4444445567


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994          315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE  394 (496)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  394 (496)
                      +.+-..++.++|.++++...+.. +.++.....+...|.-.++.+.|+..++++.+.|+. ++..|+.+.-+|.-.+++|
T Consensus       298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D  375 (478)
T KOG1129|consen  298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID  375 (478)
T ss_pred             HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence            77778888999999999888764 346666667777788888999999999999998887 8888898988898999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHH
Q 010994          395 RGFQCMKAALSVYVEGKGWKPDP--KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDE  470 (496)
Q Consensus       395 ~a~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~  470 (496)
                      -++..|++++.     .--.|+.  .+|..+.......||+..|.+.|+......+.+...+|.|.-.-.+.|  ++|..
T Consensus       376 ~~L~sf~RAls-----tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ars  450 (478)
T KOG1129|consen  376 LVLPSFQRALS-----TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARS  450 (478)
T ss_pred             hhHHHHHHHHh-----hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHH
Confidence            99999999887     3333443  577778778888899999999998777777778888988888888888  78888


Q ss_pred             HHHHHHhCCCCCCh
Q 010994          471 LLDSMKADGIDEDE  484 (496)
Q Consensus       471 ~~~~m~~~g~~p~~  484 (496)
                      +++...+  +.|+.
T Consensus       451 ll~~A~s--~~P~m  462 (478)
T KOG1129|consen  451 LLNAAKS--VMPDM  462 (478)
T ss_pred             HHHHhhh--hCccc
Confidence            8888776  44553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.42  E-value=1.7e-09  Score=101.84  Aligned_cols=295  Identities=14%  Similarity=0.153  Sum_probs=173.0

Q ss_pred             hhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH-HHHHHHHHhc-
Q 010994          103 VQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY-NDIMCLYSKT-  179 (496)
Q Consensus       103 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~-  179 (496)
                      +...++...|++++|+..+......-+| ..........+.+.|+.++|..+|..+.+++  |+-..| ..+..+..-. 
T Consensus         9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen    9 YKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence            3345555566666666666554444344 4445566667777777777777777776663  333333 3333333111 


Q ss_pred             ----CCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH-HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChH
Q 010994          180 ----GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE-GMEIILREMESQPHIVLDWSTYASAAHFYIKANLID  254 (496)
Q Consensus       180 ----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  254 (496)
                          .+.+....+|+++...-  |.......+.-.+..-..+. .+..++..+. ..|+ |+  +|+.+-..|......+
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l-~Kgv-Ps--lF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQL-RKGV-PS--LFSNLKPLYKDPEKAA  160 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHH-hcCC-ch--HHHHHHHHHcChhHHH
Confidence                13344556666665432  33333222222222212222 2334445555 5566 32  3444555555444444


Q ss_pred             HHHHHHHHHHHhc--------------ccCcc--chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010994          255 KASDVLKKAEERL--------------EQKDG--IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALM  318 (496)
Q Consensus       255 ~a~~~~~~m~~~~--------------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  318 (496)
                      -...++.......              -.|..  .++..+.+.|-..|++++|+++.+......+ ..+..|..-.+.+-
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilK  239 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence            4455555443210              11222  3445667777888888888888887777654 44567777788888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhH--------HHHHHHHHHhc
Q 010994          319 KLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNS--------WAVVAAGYFDA  390 (496)
Q Consensus       319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--------~~~l~~~~~~~  390 (496)
                      +.|++.+|...++........ |..+-+..+..+.++|++++|.+++......+..|-...        ......+|.+.
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888776433 666666777777888888888888888776654332221        23456778888


Q ss_pred             CChHHHHHHHHHHHHhh
Q 010994          391 GKTERGFQCMKAALSVY  407 (496)
Q Consensus       391 ~~~~~a~~~~~~~~~~~  407 (496)
                      |++..|+..|....+.|
T Consensus       319 ~~~~~ALk~~~~v~k~f  335 (517)
T PF12569_consen  319 GDYGLALKRFHAVLKHF  335 (517)
T ss_pred             hhHHHHHHHHHHHHHHH
Confidence            88888888887777644

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13041 PPR_2: PPR repeat family

Probab=99.42  E-value=7e-13  Score=82.59  Aligned_cols=50  Identities=30%  Similarity=0.477  Sum_probs=36.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 010994          129 KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK  178 (496)
Q Consensus       129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~  178 (496)
                      ||..+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            56677777777777777777777777777777777777777777777653

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.42  E-value=1.7e-10  Score=100.07  Aligned_cols=200  Identities=16%  Similarity=0.083  Sum_probs=121.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS  210 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  210 (496)
                      ...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+... .+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHH
Confidence            4566667777777777777777777776553 22456666677777777777777777777766532 244556666666


Q ss_pred             HhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994          211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE  290 (496)
Q Consensus       211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~  290 (496)
                      +...|++++|.+.+++.............+..+..++...|++++|...+++.....+ .+...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHH
Confidence            7777777777777777652222222334455566666666777777777766655432 234455566666666666666


Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994          291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWE  334 (496)
Q Consensus       291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  334 (496)
                      |...++......+ .+...+..+...+...|+.+.|..+.+.+.
T Consensus       188 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       188 ARAYLERYQQTYN-QTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            6666665555422 333444455555556666666666555544

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.40  E-value=2.5e-11  Score=101.97  Aligned_cols=230  Identities=13%  Similarity=0.051  Sum_probs=163.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH-HHHHHHhh
Q 010994          135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR-ICINSYGA  213 (496)
Q Consensus       135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~  213 (496)
                      +-+..+|.+.|-+.+|.+.|+.-.+.  .|-+.||-.|-..|.+..++..|+.+|.+-.+.  -|-.+||. -..+.+-.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence            56777788888888888877776655  456677777777888888888888777776653  45555543 35567777


Q ss_pred             cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHH
Q 010994          214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR  293 (496)
Q Consensus       214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  293 (496)
                      .++.++|.++++... +... .++.....+...|.-.++++-|++.|+++.+.|+ .+...|+.+.-+|.-.++++-++.
T Consensus       303 m~~~~~a~~lYk~vl-k~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~  379 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVL-KLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLP  379 (478)
T ss_pred             HHhHHHHHHHHHHHH-hcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence            778888888887776 4433 4555555666777777888888888888877776 667777777777777788888887


Q ss_pred             HHHHHHhhcCCCCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 010994          294 LWDLEKTACKRYIN--RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK  371 (496)
Q Consensus       294 ~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (496)
                      -|......-..|+.  ..|-.+.......||+..|.+.|+.....+. .+...+|.|.-.-.+.|+++.|..++......
T Consensus       380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            77766665544443  4566677777777888888888877776542 24566777777777788888888888777664


Q ss_pred             C
Q 010994          372 G  372 (496)
Q Consensus       372 ~  372 (496)
                      .
T Consensus       459 ~  459 (478)
T KOG1129|consen  459 M  459 (478)
T ss_pred             C
Confidence            3

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.40  E-value=4.3e-11  Score=113.27  Aligned_cols=274  Identities=15%  Similarity=0.106  Sum_probs=150.8

Q ss_pred             HHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCC
Q 010994          152 SHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQP  231 (496)
Q Consensus       152 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~  231 (496)
                      .++-.+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-.....+...++.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            35566777777777777777777777777777776 7777776666666777777777777777665433          


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHH
Q 010994          232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI  311 (496)
Q Consensus       232 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  311 (496)
                        .|...+|..|..+|...||+..    |+...+        ....+...+...|.......++...  .+.......-.
T Consensus        80 --ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~--~c~p~~lpda~  143 (1088)
T KOG4318|consen   80 --EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKI--HCCPHSLPDAE  143 (1088)
T ss_pred             --CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhc--ccCcccchhHH
Confidence              3667777777777777777665    222221        1223334445555555544444321  11111112222


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994          312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG  391 (496)
Q Consensus       312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  391 (496)
                      ..+.-..-.|-++.+.+++..+...... .+  +..++.-+..  ......++........-.|++.+|...+..-...|
T Consensus       144 n~illlv~eglwaqllkll~~~Pvsa~~-~p--~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag  218 (1088)
T KOG4318|consen  144 NAILLLVLEGLWAQLLKLLAKVPVSAWN-AP--FQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAG  218 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCccccc-ch--HHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Confidence            3333344455555555555444322111 00  0111221111  11222222222222111366667777777777777


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHhCC
Q 010994          392 KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT-VIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       392 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g  465 (496)
                      +.+.|..++.+|.+     .|++.+...|..++.+   .|+..-+..+++.|.. ++.|+..|+.-.+..+..+|
T Consensus       219 ~~d~Ak~ll~emke-----~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~  285 (1088)
T KOG4318|consen  219 DVDGAKNLLYEMKE-----KGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG  285 (1088)
T ss_pred             chhhHHHHHHHHHH-----cCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence            77777777777766     6666666655555544   5566666666665555 46666666666666666655

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=3.8e-08  Score=85.88  Aligned_cols=396  Identities=9%  Similarity=0.010  Sum_probs=252.5

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHhCCCC------------------CCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC
Q 010994           67 RIIRDLRKRKRFSQALEVSDWMNRKGIC------------------VFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE  128 (496)
Q Consensus        67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  128 (496)
                      .+++...+.+.+..|++-|....+....                  +.+.+.....+..+...++-+.|...+...+...
T Consensus        48 yl~~~~~h~r~yr~a~~~~~~~~~~~~s~~r~s~~~~~s~~~S~~~~~~~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~  127 (564)
T KOG1174|consen   48 YLLNANYKERNYRAALRHFDEIIHKRRLMMRHKNAVLVAIESSYPEFGDAEQRRRAAECYRQIGNTDMAIETLLQVPPTL  127 (564)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHhhHhhccccccccccccccCCCcccHHHHHHHHHHHHHHccchHHHHHHhcCCccc
Confidence            3444445556677777777776654311                  1122333345777788888999998888877654


Q ss_pred             CCHHHHHHHHHHHHhc-CC-HHHH-------------HHHHHHHHHCCC---------------CCChhHHHHHHHHH--
Q 010994          129 KTYQTYGALLNCYVRQ-RQ-TDKA-------------LSHFRKMKEMGI---------------ALSTLTYNDIMCLY--  176 (496)
Q Consensus       129 ~~~~~~~~li~~~~~~-g~-~~~A-------------~~~~~~m~~~g~---------------~p~~~~~~~l~~~~--  176 (496)
                      ..+.. |.++..+.+. ++ +++.             +..+.-..+.++               +|+..+....+.++  
T Consensus       128 r~p~i-nlMla~l~~~g~r~~~~vl~ykevvrecp~aL~~i~~ll~l~v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq  206 (564)
T KOG1174|consen  128 RSPRI-NLMLARLQHHGSRHKEAVLAYKEVIRECPMALQVIEALLELGVNGNEINSLVMHAATVPDHFDWLSKWIKALAQ  206 (564)
T ss_pred             cchhH-HHHHHHHHhccccccHHHHhhhHHHHhcchHHHHHHHHHHHhhcchhhhhhhhhheecCCCccHHHHHHHHHHH
Confidence            43332 3333333222 22 2222             122222222222               22223333333333  


Q ss_pred             HhcCCCCcHHHHHHHHHHCC-CCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHH
Q 010994          177 SKTGQYEKVPDVLTEMKAKN-IFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK  255 (496)
Q Consensus       177 ~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  255 (496)
                      +-.++...+...+-.+.... ++.|+.....+.+++...|+.+.|+..|++.. ..++ -+..........+...|+.++
T Consensus       207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~-~~dp-y~i~~MD~Ya~LL~~eg~~e~  284 (564)
T KOG1174|consen  207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL-CANP-DNVEAMDLYAVLLGQEGGCEQ  284 (564)
T ss_pred             HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh-hCCh-hhhhhHHHHHHHHHhccCHhh
Confidence            33445555555544444332 55677788889999999999999999999887 4443 333333444455677888888


Q ss_pred             HHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          256 ASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       256 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (496)
                      ...+...+.... .-....|..-+.......+++.|+.+-++..+..+ .+...+..-...+...|+.++|.-.|+....
T Consensus       285 ~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~  362 (564)
T KOG1174|consen  285 DSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQM  362 (564)
T ss_pred             HHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHh
Confidence            888877765422 23444555556666777888889888887766554 4556666667778889999999999988876


Q ss_pred             cCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHH-HHHHh-cCChHHHHHHHHHHHHhhhcCCCC
Q 010994          336 SGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVA-AGYFD-AGKTERGFQCMKAALSVYVEGKGW  413 (496)
Q Consensus       336 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~  413 (496)
                      .. +-+..+|..|+.+|...|++.+|...-+...+. ..-+..+...+. ..|.- ..--++|-.++++.+.       +
T Consensus       363 La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~-------~  433 (564)
T KOG1174|consen  363 LA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK-------I  433 (564)
T ss_pred             cc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc-------c
Confidence            53 347788999999999999999988766655443 122555555552 33332 2334778888888765       6


Q ss_pred             CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994          414 KPDP-KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA  477 (496)
Q Consensus       414 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~  477 (496)
                      .|+. ...+.+...|...|..+.+..+++..... -+|....+.|.+.+...+  ++|++.|.....
T Consensus       434 ~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~-~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  434 NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII-FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             CCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh-ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            6764 46667778888889999999998876653 477778888888888777  778887777665

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.38  E-value=3.6e-08  Score=90.78  Aligned_cols=400  Identities=11%  Similarity=0.101  Sum_probs=240.8

Q ss_pred             CCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC-------C-
Q 010994           58 NKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE-------K-  129 (496)
Q Consensus        58 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~-  129 (496)
                      .+-....|...+....+.+-++-++.+|+..++-     +|......+..++..+++++|.+.+..+...+       + 
T Consensus       134 vtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkS  208 (835)
T KOG2047|consen  134 VTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKS  208 (835)
T ss_pred             hHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccc
Confidence            3344456677777777778888888888888874     47777778888899999999998888876552       2 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhH
Q 010994          130 TYQTYGALLNCYVRQRQTDKAL---SHFRKMKEMGIALS--TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSY  204 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~---~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  204 (496)
                      +...|.-+-+..++.-+.-.-+   .++..+..+  -+|  ...|++|.+.|.+.|.+++|.++|++..+.-  .+..-|
T Consensus       209 n~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDF  284 (835)
T KOG2047|consen  209 NHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDF  284 (835)
T ss_pred             hhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhH
Confidence            4667777777776655433322   233333322  234  3468999999999999999999999988752  234445


Q ss_pred             HHHHHHHhhcC----------------------ChHHHHHHHHHhhcCCCCC----------CCHHHHHHHHHHHHhcCC
Q 010994          205 RICINSYGARS----------------------DLEGMEIILREMESQPHIV----------LDWSTYASAAHFYIKANL  252 (496)
Q Consensus       205 ~~li~~~~~~~----------------------~~~~a~~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~~~  252 (496)
                      +.+.++|+.-.                      +++....-|+.+......-          -++..|..  ..-...|+
T Consensus       285 t~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~  362 (835)
T KOG2047|consen  285 TQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGN  362 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCC
Confidence            55555554311                      1223334444444111110          11111111  11123466


Q ss_pred             hHHHHHHHHHHHHhcccCc------cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHhcCC
Q 010994          253 IDKASDVLKKAEERLEQKD------GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI----NRDYITMLEALMKLGE  322 (496)
Q Consensus       253 ~~~a~~~~~~m~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~  322 (496)
                      ..+-..+|.+.... +.|.      ...|..+...|-.+|+.+.|..+|++...-.- +.    ..+|..-...=.+..+
T Consensus       363 ~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y-~~v~dLa~vw~~waemElrh~~  440 (835)
T KOG2047|consen  363 AAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY-KTVEDLAEVWCAWAEMELRHEN  440 (835)
T ss_pred             hHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-cchHHHHHHHHHHHHHHHhhhh
Confidence            77777788777653 2222      24588888889999999999999987655433 22    2334444455566777


Q ss_pred             HHHHHHHHHHHHhcCCC-----------------CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 010994          323 HEEAEKVLKEWELSGNS-----------------YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAA  385 (496)
Q Consensus       323 ~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  385 (496)
                      ++.|.++++......-.                 -+..+|...++.--..|-++....+++++.+..+. ++........
T Consensus       441 ~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAm  519 (835)
T KOG2047|consen  441 FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAM  519 (835)
T ss_pred             HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHH
Confidence            88888887766532111                 02234555555555678888888888888887665 4444444444


Q ss_pred             HHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH-
Q 010994          386 GYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGD---EGSVQDVEAFVAALRTVIPMNRQMYHAFIKA-  460 (496)
Q Consensus       386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-  460 (496)
                      -+....-++++.+.|++-+..     --.|+. ..|+..+.-+.+   .-+.+.|..+|++..++.||...-+-.|+.+ 
T Consensus       520 fLEeh~yfeesFk~YErgI~L-----Fk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~  594 (835)
T KOG2047|consen  520 FLEEHKYFEESFKAYERGISL-----FKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAK  594 (835)
T ss_pred             HHHhhHHHHHHHHHHHcCCcc-----CCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            455556677777777775541     122443 466666555433   2467778888887777776544322222222 


Q ss_pred             -HHhCC--CcHHHHHHHHH
Q 010994          461 -NIRNG--KGVDELLDSMK  476 (496)
Q Consensus       461 -~~~~g--~~a~~~~~~m~  476 (496)
                       --+.|  ..|+.++++.-
T Consensus       595 lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  595 LEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence             12234  56777776643

>PF13041 PPR_2: PPR repeat family

Probab=99.38  E-value=8.4e-13  Score=82.25  Aligned_cols=50  Identities=34%  Similarity=0.652  Sum_probs=42.3

Q ss_pred             CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 010994          164 LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA  213 (496)
Q Consensus       164 p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  213 (496)
                      ||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            68888888888888888888888888888888888888888888888764

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.38  E-value=3.4e-08  Score=90.13  Aligned_cols=425  Identities=11%  Similarity=0.060  Sum_probs=241.5

Q ss_pred             ccHHhhhccCCCCCCCcHHH---HHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhh
Q 010994           30 TTLYSIISPLGNPGTRIEPE---LDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLD  106 (496)
Q Consensus        30 ~~l~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  106 (496)
                      ..++..+.+.+... ...+.   ...+.. +.+-+...+..-+-++.+.++|++|+.+.+.-...     ........=.
T Consensus        13 ~~l~t~ln~~~~~~-e~e~a~k~~~Kil~-~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~-----~~~~~~~fEK   85 (652)
T KOG2376|consen   13 EALLTDLNRHGKNG-EYEEAVKTANKILS-IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL-----LVINSFFFEK   85 (652)
T ss_pred             HHHHHHHHHhccch-HHHHHHHHHHHHHh-cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh-----hhcchhhHHH
Confidence            45666666555422 22222   233322 34566667777777888889999998554432211     1111111223


Q ss_pred             HH--HhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCCC
Q 010994          107 LI--GRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYS-KTGQYE  183 (496)
Q Consensus       107 ~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~  183 (496)
                      +|  .+.++.++|+..++.....  |..+...-...+.+.|++++|+++|+.+.+.+.+    .+..-+++-+ ..+--.
T Consensus        86 AYc~Yrlnk~Dealk~~~~~~~~--~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a~~a~l  159 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLKGLDRL--DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLAVAAAL  159 (652)
T ss_pred             HHHHHHcccHHHHHHHHhccccc--chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHHHHHhh
Confidence            33  4788899999888843332  3445555567788899999999999998777432    2222222111 111111


Q ss_pred             cHHHHHHHHHHCCCCCChhhHHHHH---HHHhhcCChHHHHHHHHHhh-------cCCCCC-CC----HHH-HHHHHHHH
Q 010994          184 KVPDVLTEMKAKNIFPDNFSYRICI---NSYGARSDLEGMEIILREME-------SQPHIV-LD----WST-YASAAHFY  247 (496)
Q Consensus       184 ~a~~~~~~m~~~~~~p~~~~~~~li---~~~~~~~~~~~a~~~~~~~~-------~~~~~~-~~----~~~-~~~li~~~  247 (496)
                      .+    +.+......| ..+|..+.   ..+...|++..|+++++...       .+.+.. .+    ..+ -.-+...+
T Consensus       160 ~~----~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVl  234 (652)
T KOG2376|consen  160 QV----QLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVL  234 (652)
T ss_pred             hH----HHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHH
Confidence            11    1222223333 23444443   34567899999999988772       011111 11    111 12344566


Q ss_pred             HhcCChHHHHHHHHHHHHhcccCccch----HHHHHHHHHhcCCHH----------------H-----------------
Q 010994          248 IKANLIDKASDVLKKAEERLEQKDGIG----YNFLISLYASLGNKS----------------E-----------------  290 (496)
Q Consensus       248 ~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l~~~~~~~~~~~----------------~-----------------  290 (496)
                      -..|+.++|..+|...+...+ +|...    -|.++..-....-++                .                 
T Consensus       235 Q~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~  313 (652)
T KOG2376|consen  235 QLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNN  313 (652)
T ss_pred             HHhcchHHHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            778999999999998877654 43321    122211110000000                0                 


Q ss_pred             ---------HHHHHHHHHhhcCCCCchhHHHHHHHHHh--cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchh
Q 010994          291 ---------VLRLWDLEKTACKRYINRDYITMLEALMK--LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ  359 (496)
Q Consensus       291 ---------a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  359 (496)
                               ..++.+.............+..++..+.+  ......+..++...-+....-...+.-.++......|+++
T Consensus       314 ~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~  393 (652)
T KOG2376|consen  314 ALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPE  393 (652)
T ss_pred             HHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHH
Confidence                     00011100111111122344455554433  2346677777777766533322345556677788899999


Q ss_pred             HHHHHHH--------HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhcc
Q 010994          360 NAEAILE--------DLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDE  430 (496)
Q Consensus       360 ~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~  430 (496)
                      .|.+++.        .+.+.+..|-  +...+...+.+.++.+.|..++.+++........-.+.. .++......-.+.
T Consensus       394 ~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~  471 (652)
T KOG2376|consen  394 VALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRH  471 (652)
T ss_pred             HHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhc
Confidence            9999999        6666555544  456677778888888888888888877442111122211 2233333344567


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHH
Q 010994          431 GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDSM  475 (496)
Q Consensus       431 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~m  475 (496)
                      |+-++|..+++++.+..++|..+...++.+|++.. +.|..+-+.+
T Consensus       472 G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~eka~~l~k~L  517 (652)
T KOG2376|consen  472 GNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPEKAESLSKKL  517 (652)
T ss_pred             CchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHHHHHHHhhcC
Confidence            99999999999999999999999999999999999 7777665543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=1.6e-09  Score=96.32  Aligned_cols=151  Identities=9%  Similarity=0.065  Sum_probs=122.0

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      .-.|+.-.|..-|+..++.... +...|--+..+|....+.++-...|+...+.++. |+.+|..-.+.+.-.+++++|.
T Consensus       337 fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~  414 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI  414 (606)
T ss_pred             hhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence            3467888888888888876433 2233777777888888999999999998888766 7778888888888888999999


Q ss_pred             HHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHH
Q 010994          398 QCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDS  474 (496)
Q Consensus       398 ~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~  474 (496)
                      .-|++++.       +.|+ ...|..+..+..+.++++++...|+..+..+|..+.+|+.....+...+  +.|.+.|+.
T Consensus       415 aDF~Kai~-------L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~  487 (606)
T KOG0547|consen  415 ADFQKAIS-------LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK  487 (606)
T ss_pred             HHHHHHhh-------cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence            99999876       6664 4577777777888889999999999888888888999999999888888  788888887


Q ss_pred             HHh
Q 010994          475 MKA  477 (496)
Q Consensus       475 m~~  477 (496)
                      ..+
T Consensus       488 ai~  490 (606)
T KOG0547|consen  488 AIE  490 (606)
T ss_pred             HHh
Confidence            765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.32  E-value=3.9e-09  Score=99.41  Aligned_cols=296  Identities=15%  Similarity=0.049  Sum_probs=209.4

Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHH-HHHHHHHHHHhc
Q 010994           66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQ-TYGALLNCYVRQ  144 (496)
Q Consensus        66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~li~~~~~~  144 (496)
                      -.....+...|++++|++.++.-.+.-  .-..........++.+.|+.++|...+..+...+|+-. -|..+..+..-.
T Consensus         8 LY~~~il~e~g~~~~AL~~L~~~~~~I--~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~   85 (517)
T PF12569_consen    8 LYKNSILEEAGDYEEALEHLEKNEKQI--LDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ   85 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhhhhC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence            334556788999999999998865543  23345556668999999999999999999999999644 455555655322


Q ss_pred             -----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC-CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH
Q 010994          145 -----RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY-EKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE  218 (496)
Q Consensus       145 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~  218 (496)
                           .+.+....+|+++...-  |.......+.-.+.....+ ..+...+..+...|++   .+|+.+-..|......+
T Consensus        86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~  160 (517)
T PF12569_consen   86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA  160 (517)
T ss_pred             cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence                 35788889999887763  3433333333222222223 2355566777777865   35666666676665655


Q ss_pred             HHHHHHHHhhcC---C----------CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHH
Q 010994          219 GMEIILREMESQ---P----------HIVLDW--STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYA  283 (496)
Q Consensus       219 ~a~~~~~~~~~~---~----------~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~  283 (496)
                      -..+++......   .          .-+|+.  .++..+...|-..|++++|++++++.+++.+ ..+..|..-...+-
T Consensus       161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htP-t~~ely~~KarilK  239 (517)
T PF12569_consen  161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTP-TLVELYMTKARILK  239 (517)
T ss_pred             HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHH
Confidence            555665554311   1          112443  2446678889999999999999999888653 34677888899999


Q ss_pred             hcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc--------HHHHHHHHHhc
Q 010994          284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRI--------PNAVIIGYCNN  355 (496)
Q Consensus       284 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~  355 (496)
                      ..|++.+|.+.++....... .|-..-+-.+..+.+.|++++|.+++....+.+..|....        ......+|.+.
T Consensus       240 h~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~  318 (517)
T PF12569_consen  240 HAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ  318 (517)
T ss_pred             HCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998777655 6667777788889999999999999999987765333222        24556788899


Q ss_pred             CchhHHHHHHHHHHh
Q 010994          356 GLVQNAEAILEDLVE  370 (496)
Q Consensus       356 g~~~~a~~~~~~~~~  370 (496)
                      |++..|++.|..+.+
T Consensus       319 ~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  319 GDYGLALKRFHAVLK  333 (517)
T ss_pred             hhHHHHHHHHHHHHH
Confidence            999999887776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.29  E-value=1.8e-07  Score=88.28  Aligned_cols=372  Identities=13%  Similarity=0.024  Sum_probs=212.0

Q ss_pred             CcchhhhhhhHHHhhcCHHHHHHHHHhchhcC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhHHHHHHH
Q 010994           97 APCDHAVQLDLIGRVHGFLSAESYFSNLKDDE-KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL-STLTYNDIMC  174 (496)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~  174 (496)
                      ++..+..+.-.+...|+++.+.+.|++....- .....|+.+...|...|.-..|..+++.-......| |...+-..-.
T Consensus       322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask  401 (799)
T KOG4162|consen  322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK  401 (799)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence            34444444445556666666666666554332 235566666666666777666766666544332122 3333333333


Q ss_pred             HHHh-cCCCCcHHHHHHHHHHC--C--CCCChhhHHHHHHHHhhcC-----------ChHHHHHHHHHhhcCCCCCCCHH
Q 010994          175 LYSK-TGQYEKVPDVLTEMKAK--N--IFPDNFSYRICINSYGARS-----------DLEGMEIILREMESQPHIVLDWS  238 (496)
Q Consensus       175 ~~~~-~~~~~~a~~~~~~m~~~--~--~~p~~~~~~~li~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~  238 (496)
                      .|.+ .+.+++++++-.+....  +  -......|..+.-+|...-           ...++.+.+++.. +.+. .|..
T Consensus       402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av-~~d~-~dp~  479 (799)
T KOG4162|consen  402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV-QFDP-TDPL  479 (799)
T ss_pred             HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH-hcCC-CCch
Confidence            3332 24455555555444441  1  0112233444433333211           1234555566665 3332 2222


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC----Cc-------
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY----IN-------  307 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~-------  307 (496)
                      +...+.--|+..++++.|.+...+..+.+...+...|..+.-.+...+++.+|+.+.+......+..    +.       
T Consensus       480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~  559 (799)
T KOG4162|consen  480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT  559 (799)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence            2222444456666677777777766665555666666666666666677777776666444433210    00       


Q ss_pred             --------hhHHHHHHHHHh---------c--------------CCHHHHHHHHHHH----H----hcC---------CC
Q 010994          308 --------RDYITMLEALMK---------L--------------GEHEEAEKVLKEW----E----LSG---------NS  339 (496)
Q Consensus       308 --------~~~~~l~~~~~~---------~--------------~~~~~a~~~~~~~----~----~~~---------~~  339 (496)
                              .|...++...-.         .              ++..+|......+    .    ..+         ..
T Consensus       560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~  639 (799)
T KOG4162|consen  560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL  639 (799)
T ss_pred             cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence                    000011111000         0              0000111000000    0    000         11


Q ss_pred             CCc--------ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994          340 YDT--------RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK  411 (496)
Q Consensus       340 ~~~--------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  411 (496)
                      |+.        ..|......+.+.++.++|...+.+.....+. ....|......+...|+.++|.+.|..++.      
T Consensus       640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al~------  712 (799)
T KOG4162|consen  640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVALA------  712 (799)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHHh------
Confidence            111        13445566677788888888888887765433 556777777888899999999999999986      


Q ss_pred             CCCCCH-HHHHHHHHHHhccCCHHHHHH--HHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhC
Q 010994          412 GWKPDP-KVITSILSKLGDEGSVQDVEA--FVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKAD  478 (496)
Q Consensus       412 ~~~p~~-~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~  478 (496)
                       +.|+. ....++...+.+.|+..-|..  ++..+.+..|.+...|-.++..+.+.|  +.|.+.|+...+.
T Consensus       713 -ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  713 -LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             -cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence             77765 588899999999998888877  888888888999999999999999999  7888999887653

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.26  E-value=3.6e-09  Score=98.47  Aligned_cols=243  Identities=17%  Similarity=0.128  Sum_probs=173.7

Q ss_pred             hhhHHHHHHHHhhcCChHHHHHHHHHhhcC----CCC-CCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHh-----cc-
Q 010994          201 NFSYRICINSYGARSDLEGMEIILREMESQ----PHI-VLDWST-YASAAHFYIKANLIDKASDVLKKAEER-----LE-  268 (496)
Q Consensus       201 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-  268 (496)
                      ..+...+...|...|+++.|+.+++.....    .|. .|...+ .+.+...|...+++++|..+|+++...     |. 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            456666888999999999999988776611    111 133333 334677888999999999999988543     11 


Q ss_pred             cCc-cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC------CCCc-hhHHHHHHHHHhcCCHHHHHHHHHHHHhc---C
Q 010994          269 QKD-GIGYNFLISLYASLGNKSEVLRLWDLEKTACK------RYIN-RDYITMLEALMKLGEHEEAEKVLKEWELS---G  337 (496)
Q Consensus       269 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~  337 (496)
                      .|. ..+++.|..+|.+.|++++|...++.......      .+.. ..++.+...|...+++++|..+++...+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            122 25678888889999999998888875544322      1222 33667777888899999999998876642   1


Q ss_pred             CCCC----cccHHHHHHHHHhcCchhHHHHHHHHHHhcC----C--CC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994          338 NSYD----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKG----K--AT-TPNSWAVVAAGYFDAGKTERGFQCMKAALSV  406 (496)
Q Consensus       338 ~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~--~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  406 (496)
                      +.++    ..+++.|...|...|++++|.+++++++...    -  .+ ....++.+...|.+.++.++|.++|.+....
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            2222    3568889999999999999999999886531    1  11 2346788889999999999999999988774


Q ss_pred             hhcCCC-CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994          407 YVEGKG-WKPDP-KVITSILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       407 ~~~~~~-~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      . ...| ..|+. .+|..|...|.+.|+++.|.++.+.+.
T Consensus       439 ~-~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 M-KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             H-HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            3 2222 23343 578889999999999999999888665

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.25  E-value=2e-08  Score=89.54  Aligned_cols=96  Identities=19%  Similarity=0.070  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALM  318 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  318 (496)
                      .|..+...|...|+.++|...|++..+..+ .+...|+.+...+...|++++|...|+......+ .+...+..+..++.
T Consensus        66 ~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~  143 (296)
T PRK11189         66 LHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            344444555555555555555555544332 3345555555555555555555555555544433 23344445555555


Q ss_pred             hcCCHHHHHHHHHHHHhc
Q 010994          319 KLGEHEEAEKVLKEWELS  336 (496)
Q Consensus       319 ~~~~~~~a~~~~~~~~~~  336 (496)
                      ..|++++|.+.++...+.
T Consensus       144 ~~g~~~eA~~~~~~al~~  161 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQD  161 (296)
T ss_pred             HCCCHHHHHHHHHHHHHh
Confidence            555555555555555544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.23  E-value=2.4e-08  Score=80.37  Aligned_cols=196  Identities=14%  Similarity=0.039  Sum_probs=94.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 010994          243 AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE  322 (496)
Q Consensus       243 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  322 (496)
                      |.-.|...|+...|..-+++..+..+ .+..+|..+...|.+.|..+.|.+.|+...+..+ .+....|....-+|..|+
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHHhCCC
Confidence            44455555555555555555544332 3334455555555555555555555555444433 334444444444555555


Q ss_pred             HHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 010994          323 HEEAEKVLKEWELSGNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMK  401 (496)
Q Consensus       323 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  401 (496)
                      +++|...|+.......-+ -..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.......|++-.|..+++
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence            555555555554431111 1233444444444555555555555555544333 33344445555555555555555555


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 010994          402 AALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI  447 (496)
Q Consensus       402 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  447 (496)
                      ....      +..++..+.-.-|+.-...|+-+.+.++=..+...+
T Consensus       198 ~~~~------~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f  237 (250)
T COG3063         198 RYQQ------RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF  237 (250)
T ss_pred             HHHh------cccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            5443      223455544444444455555555554444444433

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=4.8e-08  Score=85.24  Aligned_cols=266  Identities=12%  Similarity=-0.015  Sum_probs=111.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994          130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN  209 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  209 (496)
                      |+.....+..++...|+.++|...|+.....+.- +........-.+.+.|+.+....+...+.... +-....|..-..
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~  308 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQ  308 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhh
Confidence            3444455555555555555555555544433110 11112222222334444444444444443321 111222222223


Q ss_pred             HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 010994          210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS  289 (496)
Q Consensus       210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~  289 (496)
                      ......++..|+.+-++.+ +.+. .+...|-.-...+...++.++|.-.|+..+...+ .+...|.-++.+|...|++.
T Consensus       309 ~l~~~K~~~rAL~~~eK~I-~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k  385 (564)
T KOG1174|consen  309 LLYDEKKFERALNFVEKCI-DSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK  385 (564)
T ss_pred             hhhhhhhHHHHHHHHHHHh-ccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence            3333444555555554444 3332 2333333333444455555555555554433221 34445555555555555555


Q ss_pred             HHHHHHHHHHhhcCCCCchhHHHHH-HHHH-hcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCchhHHHHHHH
Q 010994          290 EVLRLWDLEKTACKRYINRDYITML-EALM-KLGEHEEAEKVLKEWELSGNSYD-TRIPNAVIIGYCNNGLVQNAEAILE  366 (496)
Q Consensus       290 ~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~  366 (496)
                      +|.-.-+.....-+ .+..+...+. ..|. ...--++|..+++...+.  .|+ ....+.+...+...|..+.++.+++
T Consensus       386 EA~~~An~~~~~~~-~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe  462 (564)
T KOG1174|consen  386 EANALANWTIRLFQ-NSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLE  462 (564)
T ss_pred             HHHHHHHHHHHHhh-cchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence            55444443333222 2333333221 1111 111224444454444433  222 1223344444455555555555555


Q ss_pred             HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          367 DLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       367 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +....  .||....+.+.+.+...+.+++|++.|..++.
T Consensus       463 ~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  463 KHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            54431  24555555555555555555555555555544

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.22  E-value=7.2e-09  Score=96.48  Aligned_cols=245  Identities=16%  Similarity=0.140  Sum_probs=178.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-----c-ccCccch-HHHHHHHHHhcCCHHHHHHHHHHHHhhcC-
Q 010994          232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER-----L-EQKDGIG-YNFLISLYASLGNKSEVLRLWDLEKTACK-  303 (496)
Q Consensus       232 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-  303 (496)
                      +.+.-..+...+...|...|+++.|+.+++...+.     | ..|...+ .+.+...|...+++.+|..+|+.+..... 
T Consensus       194 ~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~  273 (508)
T KOG1840|consen  194 EDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREE  273 (508)
T ss_pred             CCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            33334556666999999999999999999987654     1 1233332 34477789999999999999997765422 


Q ss_pred             ---CCCc---hhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCc-ccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994          304 ---RYIN---RDYITMLEALMKLGEHEEAEKVLKEWELS-----G-NSYDT-RIPNAVIIGYCNNGLVQNAEAILEDLVE  370 (496)
Q Consensus       304 ---~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (496)
                         ..++   .+++.|..+|.+.|++++|...++...+.     | ..|.+ ..++.+...++..+++++|..+++...+
T Consensus       274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~  353 (508)
T KOG1840|consen  274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK  353 (508)
T ss_pred             hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence               2222   45777888999999999999988877642     1 12222 2356677788899999999999987653


Q ss_pred             c---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC-CC-CHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994          371 K---GKATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW-KP-DPKVITSILSKLGDEGSVQDVEAFVA  441 (496)
Q Consensus       371 ~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~  441 (496)
                      .   -+.++    ..+++.|...|...|++++|.+++++++....+..|- .+ ....++.+...|.+.+++.+|.++|.
T Consensus       354 i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~  433 (508)
T KOG1840|consen  354 IYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFE  433 (508)
T ss_pred             HHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHH
Confidence            2   12222    3589999999999999999999999999843322231 22 24578888889999999999999988


Q ss_pred             HHHh---c----CCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994          442 ALRT---V----IPMNRQMYHAFIKANIRNG--KGVDELLDSMK  476 (496)
Q Consensus       442 ~~~~---~----~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~  476 (496)
                      +...   .    .|....+|..|...|.+.|  +.|.++.+...
T Consensus       434 ~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  434 EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            6544   1    2233468999999999999  78888776654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.21  E-value=1.9e-07  Score=86.67  Aligned_cols=311  Identities=11%  Similarity=-0.008  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh-hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHH--
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGI-ALST-LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRI--  206 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--  206 (496)
                      ...|..+...+...|+.+.+.+.+....+... .++. .........+...|++++|...+++..+.. +.+...+..  
T Consensus         6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~   84 (355)
T cd05804           6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL   84 (355)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence            34455555555556666665555555433211 1111 112222334455667777777776666542 112223221  


Q ss_pred             -HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 010994          207 -CINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASL  285 (496)
Q Consensus       207 -li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~  285 (496)
                       ........+..+.+.+.+...  ....+........+...+...|++++|...+++..+..+ .+...+..+...+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p-~~~~~~~~la~i~~~~  161 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP-DDAWAVHAVAHVLEMQ  161 (355)
T ss_pred             HHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHc
Confidence             111111234444444444432  222223334444555666777777777777777766543 4455666677777777


Q ss_pred             CCHHHHHHHHHHHHhhcCC-CCc--hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccH-H--HHHHHHHhcCch
Q 010994          286 GNKSEVLRLWDLEKTACKR-YIN--RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD-TRIP-N--AVIIGYCNNGLV  358 (496)
Q Consensus       286 ~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-~--~l~~~~~~~g~~  358 (496)
                      |++++|...++......+. ++.  ..|..+...+...|++++|..++++.......+. .... +  .++..+...|..
T Consensus       162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~  241 (355)
T cd05804         162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV  241 (355)
T ss_pred             CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence            7777777777765554331 111  2244566667777777777777777643321111 1100 1  222333334433


Q ss_pred             hHHHHH--HHHH-HhcCC-CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcC--CCCC-CCHHHHHHHHHHHhccC
Q 010994          359 QNAEAI--LEDL-VEKGK-ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEG--KGWK-PDPKVITSILSKLGDEG  431 (496)
Q Consensus       359 ~~a~~~--~~~~-~~~~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~-p~~~~~~~l~~~~~~~g  431 (496)
                      +.+.++  +... ..... ............++...|+.+.|...+..+.......  .+.. ...........++...|
T Consensus       242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g  321 (355)
T cd05804         242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG  321 (355)
T ss_pred             ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence            333332  1111 11100 0011222245667777888888888888776521110  0000 01111222223456778


Q ss_pred             CHHHHHHHHHHHHh
Q 010994          432 SVQDVEAFVAALRT  445 (496)
Q Consensus       432 ~~~~a~~~~~~~~~  445 (496)
                      +.++|.+.+.....
T Consensus       322 ~~~~A~~~L~~al~  335 (355)
T cd05804         322 NYATALELLGPVRD  335 (355)
T ss_pred             CHHHHHHHHHHHHH
Confidence            88888888876543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.19  E-value=1.7e-08  Score=90.11  Aligned_cols=89  Identities=18%  Similarity=0.074  Sum_probs=47.4

Q ss_pred             hhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994          105 LDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE  183 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  183 (496)
                      ...+...|+.+.|...|++.....| +...|+.+...+...|++++|...|+...+.... +..+|..+..++...|+++
T Consensus        71 g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~  149 (296)
T PRK11189         71 GVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYE  149 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHH
Confidence            3444455555555555555555544 3555555555555555555555555555544211 3444555555555555555


Q ss_pred             cHHHHHHHHHH
Q 010994          184 KVPDVLTEMKA  194 (496)
Q Consensus       184 ~a~~~~~~m~~  194 (496)
                      +|.+.|+...+
T Consensus       150 eA~~~~~~al~  160 (296)
T PRK11189        150 LAQDDLLAFYQ  160 (296)
T ss_pred             HHHHHHHHHHH
Confidence            55555555554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.18  E-value=4.8e-08  Score=78.69  Aligned_cols=200  Identities=14%  Similarity=0.023  Sum_probs=135.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010994          133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYG  212 (496)
Q Consensus       133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  212 (496)
                      +..-|.-.|...|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|++..+... -+..+.|...-.+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence            3455666777777777777777777776433 566677777777777777777777777776422 24455666666677


Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 010994          213 ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL  292 (496)
Q Consensus       213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  292 (496)
                      ..|++++|.+.|++.........-..+|..+.-|..+.|+.+.|.+.|++..+..+ ....+.-.+.......|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence            77777777777777664555544556676777777777777777777777766543 33455666667777777777777


Q ss_pred             HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994          293 RLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS  336 (496)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (496)
                      .+++.....++ +...+.-..|+.--..|+.+.+.++=..+.+.
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            77776666555 66666666666667777777777666666554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=9.2e-08  Score=81.86  Aligned_cols=390  Identities=11%  Similarity=-0.003  Sum_probs=206.5

Q ss_pred             HHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHH
Q 010994           70 RDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDK  149 (496)
Q Consensus        70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  149 (496)
                      ..+.+.|++++|+..|..+.+...  .+......+.-...-.|.+.+|..+-...+.   ++-.-..|.+...+.++-++
T Consensus        65 ~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k---~pL~~RLlfhlahklndEk~  139 (557)
T KOG3785|consen   65 HCYFHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKFYLGQYIEAKSIAEKAPK---TPLCIRLLFHLAHKLNDEKR  139 (557)
T ss_pred             HHHHhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCC---ChHHHHHHHHHHHHhCcHHH
Confidence            344566777777777777666441  2222222233333356667777666554433   22223334455555566555


Q ss_pred             HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH-HHHHhhcCChHHHHHHHHHhh
Q 010994          150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC-INSYGARSDLEGMEIILREME  228 (496)
Q Consensus       150 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~  228 (496)
                      -..+-+.+.+.     ..---+|.........+++|+++|.+....  .|+-...|.- .-+|.+..-++-+.+++.--.
T Consensus       140 ~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL  212 (557)
T KOG3785|consen  140 ILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYL  212 (557)
T ss_pred             HHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            55544444331     122233444444455678888998888765  3444444443 346677777777777776665


Q ss_pred             cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--------------hcc------------cCc-----cchHHH
Q 010994          229 SQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEE--------------RLE------------QKD-----GIGYNF  277 (496)
Q Consensus       229 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------------~~~------------~~~-----~~~~~~  277 (496)
                      .  .++.+..+.|.......+.=+-..|..-.+.+.+              ++.            -|.     +.+.-.
T Consensus       213 ~--q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlN  290 (557)
T KOG3785|consen  213 R--QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLN  290 (557)
T ss_pred             H--hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhh
Confidence            2  2323444455554444332111112221222111              110            000     112233


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh-------cCCHHHHHHHHHHHHhcCCCCCc-ccHHHHH
Q 010994          278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK-------LGEHEEAEKVLKEWELSGNSYDT-RIPNAVI  349 (496)
Q Consensus       278 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~  349 (496)
                      ++--|.+.+++.+|..+.+...   + .++.-|..-.-....       ...+.-|.+.|+..-.++..-|. ..-.++.
T Consensus       291 L~iYyL~q~dVqeA~~L~Kdl~---P-ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA  366 (557)
T KOG3785|consen  291 LIIYYLNQNDVQEAISLCKDLD---P-TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA  366 (557)
T ss_pred             heeeecccccHHHHHHHHhhcC---C-CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence            4445678888888888776432   1 111222211111222       23466677777776666554333 2334556


Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH-HHHHHHh
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT-SILSKLG  428 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~  428 (496)
                      ..+.-..++|+.+..++.+...-.. |...--.+.++++..|++.+|.++|-+...     ..++ |..+|. .+.++|.
T Consensus       367 s~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~-----~~ik-n~~~Y~s~LArCyi  439 (557)
T KOG3785|consen  367 SYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISG-----PEIK-NKILYKSMLARCYI  439 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcC-----hhhh-hhHHHHHHHHHHHH
Confidence            6666667788888888877765333 333333477888888999999888877643     2333 344444 4556778


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHH
Q 010994          429 DEGSVQDVEAFVAALRTVIPMNRQM-YHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKE  488 (496)
Q Consensus       429 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~  488 (496)
                      +.++.+.|..++-++..  +.+..+ ...+...|.+.+  =-|-..|+.+..  ..|+++.|.
T Consensus       440 ~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe  498 (557)
T KOG3785|consen  440 RNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE  498 (557)
T ss_pred             hcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC
Confidence            88888888877654432  333333 344445566666  234444555444  446665553

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.15  E-value=2e-07  Score=87.95  Aligned_cols=129  Identities=11%  Similarity=0.049  Sum_probs=98.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994          310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD  389 (496)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  389 (496)
                      |......+.+.+..++|...+.+..+.. ......|......+...|..++|.+.|......++. ++.+..++...+.+
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-HVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence            4556677778888888888887776653 345666777777788888888888888888876554 56678888888888


Q ss_pred             cCChHHHHH--HHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994          390 AGKTERGFQ--CMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       390 ~~~~~~a~~--~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                      .|+..-|..  ++.++++     .+.. +...|..+...+.+.|+.++|.+.|......
T Consensus       731 ~G~~~la~~~~~L~dalr-----~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALR-----LDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             hCCcchHHHHHHHHHHHh-----hCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            888777777  8888887     4444 4667888888888888888888888866554

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.15  E-value=2e-06  Score=79.82  Aligned_cols=356  Identities=14%  Similarity=0.106  Sum_probs=184.3

Q ss_pred             HHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHH
Q 010994           71 DLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDK  149 (496)
Q Consensus        71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~  149 (496)
                      .+...|+-++|.+..+...+...  -++--++...-++....++++|+++|..+...+| |..+|.-+.-.-++.|+++.
T Consensus        50 ~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   50 TLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             hhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            34455555666666555555431  2222233333334445556666666666665555 35555555555555566665


Q ss_pred             HHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCChhhHHHHH------HHHhhcCChHHHHH
Q 010994          150 ALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN-IFPDNFSYRICI------NSYGARSDLEGMEI  222 (496)
Q Consensus       150 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li------~~~~~~~~~~~a~~  222 (496)
                      .........+.. +-....|..++.++.-.|++..|..+.+...+.. -.|+...|....      ....+.|..+.|.+
T Consensus       128 ~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale  206 (700)
T KOG1156|consen  128 YLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE  206 (700)
T ss_pred             HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence            555555554431 1134445555555556666666666666655543 133433332221      22334455555555


Q ss_pred             HHHHhhcCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHH-HHHHhcCCHHHHH-HHHH---
Q 010994          223 ILREMESQPHIVLDWST-YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLI-SLYASLGNKSEVL-RLWD---  296 (496)
Q Consensus       223 ~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~-~~~~~~~~~~~a~-~~~~---  296 (496)
                      .+..-.  ..+ .|-.. -..-...+.+.+++++|..++..+...+  ||...|.... .++.+..+.-+++ .+|.   
T Consensus       207 ~L~~~e--~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls  281 (700)
T KOG1156|consen  207 HLLDNE--KQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILS  281 (700)
T ss_pred             HHHhhh--hHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence            544442  112 12111 1233445555566666666666655543  3333333322 2222222222222 3333   


Q ss_pred             -------------------------------HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh----cC----
Q 010994          297 -------------------------------LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL----SG----  337 (496)
Q Consensus       297 -------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~----  337 (496)
                                                     .+.+.|.   +.++..+...|-.....+-..++.-.+..    .|    
T Consensus       282 ~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~---p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~  358 (700)
T KOG1156|consen  282 EKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV---PSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNF  358 (700)
T ss_pred             hcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC---CchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCc
Confidence                                           2222222   22333333333322222211222222211    11    


Q ss_pred             ------CCCCcccH--HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 010994          338 ------NSYDTRIP--NAVIIGYCNNGLVQNAEAILEDLVEKGKATTP-NSWAVVAAGYFDAGKTERGFQCMKAALSVYV  408 (496)
Q Consensus       338 ------~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  408 (496)
                            -+|....|  --++..+-+.|+++.|..+++..+++  .|+. ..|..-...+...|+++.|..+++++.+   
T Consensus       359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~e---  433 (700)
T KOG1156|consen  359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQE---  433 (700)
T ss_pred             ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHh---
Confidence                  13343333  45667788899999999999999885  3443 3565666889999999999999999987   


Q ss_pred             cCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          409 EGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       409 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                         --.||...-.--.....+.++.++|.++......
T Consensus       434 ---lD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr  467 (700)
T KOG1156|consen  434 ---LDTADRAINSKCAKYMLRANEIEEAEEVLSKFTR  467 (700)
T ss_pred             ---ccchhHHHHHHHHHHHHHccccHHHHHHHHHhhh
Confidence               2345544444556667788999999999887765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.14  E-value=3.5e-07  Score=84.84  Aligned_cols=195  Identities=9%  Similarity=-0.044  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhh-hhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHA-VQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCY  141 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~  141 (496)
                      .|..+...+...|+++.+.+.+....+......++.... .....+...|++++|...++++.+..|+ ...+.. ...+
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~   86 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGA   86 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHH
Confidence            344444555555666666655555555432111111111 1122333455555555555555544442 222221 1111


Q ss_pred             H----hcCCHHHHHHHHHHHHHCCCCCC-hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994          142 V----RQRQTDKALSHFRKMKEMGIALS-TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD  216 (496)
Q Consensus       142 ~----~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~  216 (496)
                      .    ..+..+.+.+.++.  .....|+ ......+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus        87 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~  163 (355)
T cd05804          87 FGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence            1    12233333333322  0111111 2222333444455555555555555555432 1123344444555555555


Q ss_pred             hHHHHHHHHHhhcCCCC-CCCH--HHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          217 LEGMEIILREMESQPHI-VLDW--STYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       217 ~~~a~~~~~~~~~~~~~-~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      +++|...+++.. .... .++.  ..|..+...+...|++++|..++++.
T Consensus       164 ~~eA~~~l~~~l-~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~  212 (355)
T cd05804         164 FKEGIAFMESWR-DTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH  212 (355)
T ss_pred             HHHHHHHHHhhh-hccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            555555555444 2111 1111  12333444555555555555555554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=1.4e-06  Score=80.00  Aligned_cols=408  Identities=12%  Similarity=0.068  Sum_probs=238.9

Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhc
Q 010994           65 LQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQ  144 (496)
Q Consensus        65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~  144 (496)
                      +-+=+..+...+++++|++....+...+  +-+++.+.--+-.+.+.++++.|+.+.+.-.....+..-+.--.-+..+.
T Consensus        15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            3445666778899999999999999876  34556666667888899999999977665443221111111223445678


Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC-ChhhHHHHHHHHhhcCChHHHHHH
Q 010994          145 RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP-DNFSYRICINSYGARSDLEGMEII  223 (496)
Q Consensus       145 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~  223 (496)
                      +..++|+..++...+.    |..+...-.+.+.+.|++++|+++|+.+.+++.+- +...-..++.+-.    .-.+. +
T Consensus        93 nk~Dealk~~~~~~~~----~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~  163 (652)
T KOG2376|consen   93 NKLDEALKTLKGLDRL----DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-L  163 (652)
T ss_pred             ccHHHHHHHHhccccc----chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-H
Confidence            9999999999833322    44577777888999999999999999998875431 1111122222111    11111 1


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc----cCccc----------hHHHHHHHHHhcCCHH
Q 010994          224 LREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE----QKDGI----------GYNFLISLYASLGNKS  289 (496)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~----------~~~~l~~~~~~~~~~~  289 (496)
                      .+... . ....+...+......+...|++.+|+++++.....+.    .-|..          .-.-+...+...|+.+
T Consensus       164 ~q~v~-~-v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~  241 (652)
T KOG2376|consen  164 LQSVP-E-VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA  241 (652)
T ss_pred             HHhcc-C-CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence            22221 1 1111222233345677889999999999998733221    11111          1223445677899999


Q ss_pred             HHHHHHHHHHhhcCCCCchhHHHH---HHHHHhcCCHHH--------------HHHHHHHHH------------------
Q 010994          290 EVLRLWDLEKTACKRYINRDYITM---LEALMKLGEHEE--------------AEKVLKEWE------------------  334 (496)
Q Consensus       290 ~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~--------------a~~~~~~~~------------------  334 (496)
                      +|..+|.......+ +|.......   +-+...-.++-.              +......+.                  
T Consensus       242 ea~~iy~~~i~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t  320 (652)
T KOG2376|consen  242 EASSIYVDIIKRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT  320 (652)
T ss_pred             HHHHHHHHHHHhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998887765 443221111   111111111000              000000000                  


Q ss_pred             ----------hc--CCCCCcccHHHHHHHHH--hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 010994          335 ----------LS--GNSYDTRIPNAVIIGYC--NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCM  400 (496)
Q Consensus       335 ----------~~--~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  400 (496)
                                ..  +..|. ..+.+++....  +.....+|..++...-+....-.....-.++......|+++.|++++
T Consensus       321 nk~~q~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il  399 (652)
T KOG2376|consen  321 NKMDQVRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL  399 (652)
T ss_pred             hhHHHHHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence                      00  01122 22333333322  22246677777777776654434556777788889999999999999


Q ss_pred             H--------HHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc---CCCCHH----HHHHHHHHHHhCC
Q 010994          401 K--------AALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV---IPMNRQ----MYHAFIKANIRNG  465 (496)
Q Consensus       401 ~--------~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~----~~~~l~~~~~~~g  465 (496)
                      .        ...+     .+..|  .+...++..+.+.++-+.|..++......   ..+...    ++.-+...-.+.|
T Consensus       400 ~~~~~~~~ss~~~-----~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G  472 (652)
T KOG2376|consen  400 SLFLESWKSSILE-----AKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG  472 (652)
T ss_pred             HHHhhhhhhhhhh-----hccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence            8        4433     34444  45566777778888888888887765542   122223    3444444445567


Q ss_pred             --CcHHHHHHHHHhCCCCCChhHHHHHHhhhc
Q 010994          466 --KGVDELLDSMKADGIDEDEETKEILVCTME  495 (496)
Q Consensus       466 --~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~  495 (496)
                        ++|..+++++.+.. .+|..+..-++.+++
T Consensus       473 ~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~  503 (652)
T KOG2376|consen  473 NEEEASSLLEELVKFN-PNDTDLLVQLVTAYA  503 (652)
T ss_pred             chHHHHHHHHHHHHhC-CchHHHHHHHHHHHH
Confidence              79999999998853 466666666665554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.12  E-value=1.2e-06  Score=74.88  Aligned_cols=314  Identities=13%  Similarity=0.052  Sum_probs=193.8

Q ss_pred             CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhh---hhHHHhhcCHHHHHHHHHhchhcCCCHH-HHH
Q 010994           60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQ---LDLIGRVHGFLSAESYFSNLKDDEKTYQ-TYG  135 (496)
Q Consensus        60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~  135 (496)
                      .++.-.--+-..+...|++..|+.-|...++.+     |+.+..+   ...|...|+-..|+.-|+++.+..||-. .--
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-----p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARi  110 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-----PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARI  110 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-----chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHH
Confidence            344445567777888889999999998888754     5555554   5677788888888888888888888733 223


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994          136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS  215 (496)
Q Consensus       136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~  215 (496)
                      --...+.+.|.+++|..=|+.+.+...  +..+-   ..+..+.       ...+++         ......+..+...|
T Consensus       111 QRg~vllK~Gele~A~~DF~~vl~~~~--s~~~~---~eaqskl-------~~~~e~---------~~l~~ql~s~~~~G  169 (504)
T KOG0624|consen  111 QRGVVLLKQGELEQAEADFDQVLQHEP--SNGLV---LEAQSKL-------ALIQEH---------WVLVQQLKSASGSG  169 (504)
T ss_pred             HhchhhhhcccHHHHHHHHHHHHhcCC--Ccchh---HHHHHHH-------HhHHHH---------HHHHHHHHHHhcCC
Confidence            344667788999999888888877632  21110   0111000       001111         11223334455566


Q ss_pred             ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 010994          216 DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW  295 (496)
Q Consensus       216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  295 (496)
                      +...|+.....+. +..+ -|...|..-..+|...|++..|+.-++...+.. ..+..++--+-..+...|+.+.++...
T Consensus       170 D~~~ai~~i~~ll-Ei~~-Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~i  246 (504)
T KOG0624|consen  170 DCQNAIEMITHLL-EIQP-WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEI  246 (504)
T ss_pred             chhhHHHHHHHHH-hcCc-chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHH
Confidence            6667777666666 4443 566666666677777777777766665544322 244455555566666667777666666


Q ss_pred             HHHHhhcCCCCchh----HHHH---------HHHHHhcCCHHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCchh
Q 010994          296 DLEKTACKRYINRD----YITM---------LEALMKLGEHEEAEKVLKEWELSGNSYDT---RIPNAVIIGYCNNGLVQ  359 (496)
Q Consensus       296 ~~~~~~~~~~~~~~----~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~  359 (496)
                      ++.....+  +...    |..+         +......+++.++....+...+..+....   ..+..+-.++...|++.
T Consensus       247 RECLKldp--dHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~  324 (504)
T KOG0624|consen  247 RECLKLDP--DHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFG  324 (504)
T ss_pred             HHHHccCc--chhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHH
Confidence            65555432  2211    1111         12234456677777777777665433122   23345556666778888


Q ss_pred             HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          360 NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       360 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +|+....+.++.... |+.++---..+|.-...++.|+.-|+.+.+
T Consensus       325 eAiqqC~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e  369 (504)
T KOG0624|consen  325 EAIQQCKEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE  369 (504)
T ss_pred             HHHHHHHHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            888888888875433 577777778888888888888888888876

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.07  E-value=8.9e-07  Score=74.20  Aligned_cols=299  Identities=10%  Similarity=0.024  Sum_probs=197.4

Q ss_pred             CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHH
Q 010994           57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA  136 (496)
Q Consensus        57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  136 (496)
                      |.......+.+.+..+.+..++.+|++++..-.+..+  .+......+...|....++..|-..++++....|...-|..
T Consensus         5 g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl   82 (459)
T KOG4340|consen    5 GAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL   82 (459)
T ss_pred             cccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence            3444455577888889999999999999998888762  34455666677778999999999999999988886554432


Q ss_pred             -HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH--HHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 010994          137 -LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC--LYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA  213 (496)
Q Consensus       137 -li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  213 (496)
                       -...+.+.+.+..|+++...|...   |+...-..-+.  .....+++..+..+.++....|   +..+.+.......+
T Consensus        83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk  156 (459)
T KOG4340|consen   83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK  156 (459)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence             346778899999999999888764   23222222222  2345688999999988875432   44455555556678


Q ss_pred             cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc-------------c-------
Q 010994          214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG-------------I-------  273 (496)
Q Consensus       214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------------~-------  273 (496)
                      .|++++|.+-|+....-.|.. ....||..+ +..+.|+.+.|++...++.++|++..+             .       
T Consensus       157 egqyEaAvqkFqaAlqvsGyq-pllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~  234 (459)
T KOG4340|consen  157 EGQYEAAVQKFQAALQVSGYQ-PLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLV  234 (459)
T ss_pred             cccHHHHHHHHHHHHhhcCCC-chhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHH
Confidence            999999999999887456664 456677554 455678999999999999887764211             1       


Q ss_pred             --------hHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 010994          274 --------GYNFLISLYASLGNKSEVLRLWDLEKTACK-RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRI  344 (496)
Q Consensus       274 --------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  344 (496)
                              .+|.-...+.+.|+++.|.+.+-.|-.... ..|+.|...+.-. ...+++....+-+.-+....+- ...|
T Consensus       235 lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ET  312 (459)
T KOG4340|consen  235 LHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPET  312 (459)
T ss_pred             HHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHH
Confidence                    122222234566777777776665533221 3455555444222 1234455555555555555432 3456


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILED  367 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~  367 (496)
                      |..++-.||++.-++.|-.++.+
T Consensus       313 FANlLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  313 FANLLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHHHHhhhHHHhHHHHHHhh
Confidence            67777778888777777776654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.06  E-value=5.9e-09  Score=91.49  Aligned_cols=254  Identities=18%  Similarity=0.155  Sum_probs=138.3

Q ss_pred             HHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 010994          174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI  253 (496)
Q Consensus       174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  253 (496)
                      +-+.-.|++..++.-.+ ........+......+.+++...|+.+.+   +.++. ... .|.......+...+...++-
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~-~~~-~~~l~av~~la~y~~~~~~~   82 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIK-KSS-SPELQAVRLLAEYLSSPSDK   82 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS--TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhc-cCC-ChhHHHHHHHHHHHhCccch
Confidence            34445677776665444 22221112233445566777777776643   34443 222 45555554444444333444


Q ss_pred             HHHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010994          254 DKASDVLKKAEERLEQ-KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKE  332 (496)
Q Consensus       254 ~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  332 (496)
                      +.+..-+++....... .+..........+...|++++|++++...      .+.......+..|.+.++++.|.+.++.
T Consensus        83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~  156 (290)
T PF04733_consen   83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN  156 (290)
T ss_dssp             HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            4444444433222211 12222222334455667788777776521      3445666677777788888888888888


Q ss_pred             HHhcCCCCCcccHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 010994          333 WELSGNSYDTRIPNAVIIGYCN----NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYV  408 (496)
Q Consensus       333 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  408 (496)
                      |.+.+   +..+...+..++..    .+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+.+.+++.   
T Consensus       157 ~~~~~---eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~---  229 (290)
T PF04733_consen  157 MQQID---EDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALE---  229 (290)
T ss_dssp             HHCCS---CCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCC---
T ss_pred             HHhcC---CcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---
Confidence            77652   22333444444432    33577788888887664 445777777777788888888888888777754   


Q ss_pred             cCCCCCCCHHHHHHHHHHHhccCCH-HHHHHHHHHHHhcCCC
Q 010994          409 EGKGWKPDPKVITSILSKLGDEGSV-QDVEAFVAALRTVIPM  449 (496)
Q Consensus       409 ~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~  449 (496)
                         .-+-+..++..++.+....|+. +.+.+++.+++...|.
T Consensus       230 ---~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~  268 (290)
T PF04733_consen  230 ---KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPN  268 (290)
T ss_dssp             ---C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred             ---hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCC
Confidence               2223445666666666666766 5566777777665443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.05  E-value=1.2e-05  Score=73.21  Aligned_cols=382  Identities=13%  Similarity=0.139  Sum_probs=233.1

Q ss_pred             CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHH
Q 010994           57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA  136 (496)
Q Consensus        57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  136 (496)
                      ..+-|..+|+.||+-+..+ .++++.+.++++...  +|.+|..+...++.-....+++..+.+|.+.....-+...|..
T Consensus        15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l   91 (656)
T KOG1914|consen   15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL   91 (656)
T ss_pred             cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence            5678899999999987655 899999999999875  5678888888888888999999999999998876667778877


Q ss_pred             HHHHHHhc-CCHHH----HHHHHHHH-HHCCCCC-ChhHHHHHHHH---------HHhcCCCCcHHHHHHHHHHCCCCCC
Q 010994          137 LLNCYVRQ-RQTDK----ALSHFRKM-KEMGIAL-STLTYNDIMCL---------YSKTGQYEKVPDVLTEMKAKNIFPD  200 (496)
Q Consensus       137 li~~~~~~-g~~~~----A~~~~~~m-~~~g~~p-~~~~~~~l~~~---------~~~~~~~~~a~~~~~~m~~~~~~p~  200 (496)
                      .++.--+. |+...    ..+.|+-. .+.|+.+ +...|+..+..         +..+.+.+.+.++|+++....+..=
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl  171 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL  171 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence            77654433 22222    22333332 3344332 23335544443         3333455566677777665322110


Q ss_pred             hh------hHHHHHHHHh-------hcCChHHHHHHHHHhh-----------------------------------cCCC
Q 010994          201 NF------SYRICINSYG-------ARSDLEGMEIILREME-----------------------------------SQPH  232 (496)
Q Consensus       201 ~~------~~~~li~~~~-------~~~~~~~a~~~~~~~~-----------------------------------~~~~  232 (496)
                      ..      .|-.-|+...       +...+-.|.++++++.                                   ...+
T Consensus       172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp  251 (656)
T KOG1914|consen  172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP  251 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC
Confidence            11      1111111100       1112223333333322                                   0000


Q ss_pred             CC-CC--------HHHHHHHH---------------------HHHHhcCC-------hHHHHHHHHHHHHhcccCccchH
Q 010994          233 IV-LD--------WSTYASAA---------------------HFYIKANL-------IDKASDVLKKAEERLEQKDGIGY  275 (496)
Q Consensus       233 ~~-~~--------~~~~~~li---------------------~~~~~~~~-------~~~a~~~~~~m~~~~~~~~~~~~  275 (496)
                      .. .+        ..+|+..+                     +.+...|+       .+++.+++++..+.-...+..+|
T Consensus       252 L~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly  331 (656)
T KOG1914|consen  252 LRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLY  331 (656)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            00 00        00111111                     11112222       34455555554443333333344


Q ss_pred             HHHHHHHHhc---CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHH
Q 010994          276 NFLISLYASL---GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY-DTRIPNAVIIG  351 (496)
Q Consensus       276 ~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~  351 (496)
                      ..+...--..   ...+....+++............+|...++...+..-+..|..+|.++.+.+..+ ++.++++++.-
T Consensus       332 ~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy  411 (656)
T KOG1914|consen  332 FALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEY  411 (656)
T ss_pred             HHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHH
Confidence            4333221111   1355566666666655554556778888888888889999999999999887766 77788888887


Q ss_pred             HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH--HHHHHHHHHHhc
Q 010994          352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP--KVITSILSKLGD  429 (496)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~  429 (496)
                      || .++.+-|.++|+--..+-. -++.--...+.-+...++-..+..+|++.+.     .++.|+.  ..|..++.-=..
T Consensus       412 ~c-skD~~~AfrIFeLGLkkf~-d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~-----s~l~~~ks~~Iw~r~l~yES~  484 (656)
T KOG1914|consen  412 YC-SKDKETAFRIFELGLKKFG-DSPEYVLKYLDFLSHLNDDNNARALFERVLT-----SVLSADKSKEIWDRMLEYESN  484 (656)
T ss_pred             Hh-cCChhHHHHHHHHHHHhcC-CChHHHHHHHHHHHHhCcchhHHHHHHHHHh-----ccCChhhhHHHHHHHHHHHHh
Confidence            66 5788899999987555421 1344456677888888999999999999988     5566654  689999988888


Q ss_pred             cCCHHHHHHHHHHHHhcCC
Q 010994          430 EGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       430 ~g~~~~a~~~~~~~~~~~~  448 (496)
                      -|+...+.++-++....++
T Consensus       485 vGdL~si~~lekR~~~af~  503 (656)
T KOG1914|consen  485 VGDLNSILKLEKRRFTAFP  503 (656)
T ss_pred             cccHHHHHHHHHHHHHhcc
Confidence            9999999988887766544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.04  E-value=2e-06  Score=90.37  Aligned_cols=339  Identities=8%  Similarity=-0.036  Sum_probs=214.5

Q ss_pred             HHHhhcCHHHHHHHHHhchhcC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC------CCCh--hHHHHHHHHH
Q 010994          107 LIGRVHGFLSAESYFSNLKDDE--KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGI------ALST--LTYNDIMCLY  176 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~--~~~~~l~~~~  176 (496)
                      .....|+++.+..++..++...  .+..........+...|++++|...++.....--      .+..  .....+...+
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            3445677888888887764321  1222333445556678999999999987754310      1111  1222334456


Q ss_pred             HhcCCCCcHHHHHHHHHHCCCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHhhc---CCCC-CCCHHHHHHHHHHHH
Q 010994          177 SKTGQYEKVPDVLTEMKAKNIFPDN----FSYRICINSYGARSDLEGMEIILREMES---QPHI-VLDWSTYASAAHFYI  248 (496)
Q Consensus       177 ~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~~~~~li~~~~  248 (496)
                      ...|++++|...+++....-...+.    ...+.+...+...|+++.|...+++...   ..+. .....++..+...+.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            6889999999999988764111121    2345566677889999999999887751   1111 111234455677888


Q ss_pred             hcCChHHHHHHHHHHHHh----ccc--C-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC--C--CchhHHHHHHHH
Q 010994          249 KANLIDKASDVLKKAEER----LEQ--K-DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR--Y--INRDYITMLEAL  317 (496)
Q Consensus       249 ~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~  317 (496)
                      ..|++++|...+++....    +..  + ....+..+...+...|++++|...++........  +  ....+..+...+
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            999999999999887543    211  1 1223445566777889999999998866543221  1  123344566677


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCC-cccH-----HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHH
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYD-TRIP-----NAVIIGYCNNGLVQNAEAILEDLVEKGKATTP---NSWAVVAAGYF  388 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~  388 (496)
                      ...|+.+.|...+........... ...+     ...+..+...|+.+.|..++............   ..+..+..++.
T Consensus       623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  702 (903)
T PRK04841        623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI  702 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence            889999999999988764311111 1111     11224455688999999998776542211111   12456777888


Q ss_pred             hcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994          389 DAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       389 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                      ..|+.++|...++++.... ...|..++ ..+...+..++.+.|+.++|...+.+..+.
T Consensus       703 ~~g~~~~A~~~l~~al~~~-~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        703 LLGQFDEAEIILEELNENA-RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHH-HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999988732 12233332 245666777888999999999999977664

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=4.8e-06  Score=75.72  Aligned_cols=210  Identities=14%  Similarity=0.077  Sum_probs=121.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchh-------HHHHH
Q 010994          242 SAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD-------YITML  314 (496)
Q Consensus       242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~  314 (496)
                      .+.+...+..+++.|..-+.......  .+..-++....+|...|.+.++........+.+. .....       +..+.
T Consensus       229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g  305 (539)
T KOG0548|consen  229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLG  305 (539)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhh
Confidence            45555555566666666665554432  3333344444555555555555444443333322 11111       12223


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCccc-------------------------HHHHHHHHHhcCchhHHHHHHHHHH
Q 010994          315 EALMKLGEHEEAEKVLKEWELSGNSYDTRI-------------------------PNAVIIGYCNNGLVQNAEAILEDLV  369 (496)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------------------~~~l~~~~~~~g~~~~a~~~~~~~~  369 (496)
                      .+|.+.++++.|...|.+.......|+...                         ...-...+.+.|++..|+..|.+++
T Consensus       306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAI  385 (539)
T KOG0548|consen  306 NAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAI  385 (539)
T ss_pred             hhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            344445555556555555443222221110                         1112345667788899999998888


Q ss_pred             hcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          370 EKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       370 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                      .+++. |...|..-..+|.+.|.+..|+.-.+..++       ..|+ ...|..=..++....+++.|.+.|.+..+..|
T Consensus       386 kr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ie-------L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp  457 (539)
T KOG0548|consen  386 KRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIE-------LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP  457 (539)
T ss_pred             hcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            88755 788888888888999999888888888876       3444 34555555566666788888888887777555


Q ss_pred             CCHHHHHHHHHHHH
Q 010994          449 MNRQMYHAFIKANI  462 (496)
Q Consensus       449 ~~~~~~~~l~~~~~  462 (496)
                      .+...-..+.++..
T Consensus       458 ~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  458 SNAEAIDGYRRCVE  471 (539)
T ss_pred             hhHHHHHHHHHHHH
Confidence            55555444444444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.02  E-value=1.9e-08  Score=88.37  Aligned_cols=150  Identities=13%  Similarity=0.105  Sum_probs=86.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----c
Q 010994          245 HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK----L  320 (496)
Q Consensus       245 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~  320 (496)
                      ..+...|++++|+++++.    +  .+.......+..|.+.++++.|.+.++.|.+.   .+..+...+..++..    .
T Consensus       110 ~i~~~~~~~~~AL~~l~~----~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~---~eD~~l~qLa~awv~l~~g~  180 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHK----G--GSLELLALAVQILLKMNRPDLAEKELKNMQQI---DEDSILTQLAEAWVNLATGG  180 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTT----T--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC---SCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCHHHHHHHHHc----c--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHhCc
Confidence            344455666666666654    1  23344455566666666666666666665543   223344444444322    2


Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh-HHHHHH
Q 010994          321 GEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT-ERGFQC  399 (496)
Q Consensus       321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~  399 (496)
                      +.+..|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..+.+.. |+.+...++......|+. +.+.++
T Consensus       181 e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~  258 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERY  258 (290)
T ss_dssp             TCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             hhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHH
Confidence            3577777777776554 3456666777777777777777777777777665544 566666677776776766 455566


Q ss_pred             HHHHHH
Q 010994          400 MKAALS  405 (496)
Q Consensus       400 ~~~~~~  405 (496)
                      +.++..
T Consensus       259 l~qL~~  264 (290)
T PF04733_consen  259 LSQLKQ  264 (290)
T ss_dssp             HHHCHH
T ss_pred             HHHHHH
Confidence            666554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.98  E-value=9.4e-08  Score=87.22  Aligned_cols=223  Identities=16%  Similarity=0.097  Sum_probs=126.2

Q ss_pred             HHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcH
Q 010994          107 LIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV  185 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a  185 (496)
                      .+.+.|++.+|.-.|+.....+| +...|-.|.......++-..|+..+.+..+.... |....-.|.-.|...|.-..|
T Consensus       294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A  372 (579)
T KOG1125|consen  294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA  372 (579)
T ss_pred             HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence            34456667777777776666666 4666777777777777767777777666665332 555666666666666666666


Q ss_pred             HHHHHHHHHCCCC--------CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010994          186 PDVLTEMKAKNIF--------PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKAS  257 (496)
Q Consensus       186 ~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  257 (496)
                      +..++..+....+        ++..+-..  ..+.....+....++|-++....+..+|..++..|.-.|.-.|++++|.
T Consensus       373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai  450 (579)
T KOG1125|consen  373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV  450 (579)
T ss_pred             HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence            6666666543211        00000000  1112222333444555444434444455666666666666666666666


Q ss_pred             HHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994          258 DVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWE  334 (496)
Q Consensus       258 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  334 (496)
                      +.|+......+ .|...||.+.-.++...+.++|+..|.+.++..+ .-++....|.-.|...|.+++|.+.|-...
T Consensus       451 Dcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP-~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  451 DCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQLQP-GYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC-CeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            66666655433 4556666666666666666666666666665544 333444445556666666666666554443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=1.4e-06  Score=74.83  Aligned_cols=200  Identities=10%  Similarity=0.030  Sum_probs=128.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcccCcc-----chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-hhHHHHHH
Q 010994          242 SAAHFYIKANLIDKASDVLKKAEERLEQKDG-----IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN-RDYITMLE  315 (496)
Q Consensus       242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~  315 (496)
                      .|+-.|.+.+++.+|..+.+++...  .|-.     +++..+.+-........-|.+.|...-.+...-|. ..-.++.+
T Consensus       290 NL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs  367 (557)
T KOG3785|consen  290 NLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMAS  367 (557)
T ss_pred             hheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHH
Confidence            3666788999999999988874221  1111     12222222222333455677777744333332222 34556677


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHH-HHHHHHhcCChH
Q 010994          316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAV-VAAGYFDAGKTE  394 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~  394 (496)
                      ++.-..++++..-+++.+..--...|...+ .+.++++..|++.+|.++|-++....++ |..+|-+ +..+|.+.++++
T Consensus       368 ~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~  445 (557)
T KOG3785|consen  368 YFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQ  445 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCch
Confidence            777778889999888888765444344444 4788899999999999999888766666 5666654 556788899999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCHHH-HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994          395 RGFQCMKAALSVYVEGKGWKPDPKV-ITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY  454 (496)
Q Consensus       395 ~a~~~~~~~~~~~~~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  454 (496)
                      .|+.++-++        .-+.+..+ ...+.+-|.+++.+--|-+.|+.+... .|++.-|
T Consensus       446 lAW~~~lk~--------~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l-DP~pEnW  497 (557)
T KOG3785|consen  446 LAWDMMLKT--------NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEIL-DPTPENW  497 (557)
T ss_pred             HHHHHHHhc--------CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc-CCCcccc
Confidence            998877664        22333333 334456788888888888888877663 4555444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.96  E-value=9.6e-06  Score=69.56  Aligned_cols=300  Identities=14%  Similarity=0.085  Sum_probs=196.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH---HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH-HHHHHH
Q 010994          136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI---MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR-ICINSY  211 (496)
Q Consensus       136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~  211 (496)
                      -+...+...|++..|+..|....+.    |+..|.++   ...|...|+..-|+.=+.+..+  .+||-..-. .-...+
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl  116 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL  116 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence            3445555556666666666655554    33333333   2345555665555555555554  245422111 112345


Q ss_pred             hhcCChHHHHHHHHHhhcCCCCC--CCHHH------------HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHH
Q 010994          212 GARSDLEGMEIILREMESQPHIV--LDWST------------YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNF  277 (496)
Q Consensus       212 ~~~~~~~~a~~~~~~~~~~~~~~--~~~~~------------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  277 (496)
                      .+.|.++.|..-|+.+. +.+..  ....+            ....+..+...|+...|+.....+.+.. +.|...|..
T Consensus       117 lK~Gele~A~~DF~~vl-~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~  194 (504)
T KOG0624|consen  117 LKQGELEQAEADFDQVL-QHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQA  194 (504)
T ss_pred             hhcccHHHHHHHHHHHH-hcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHH
Confidence            56666666666666665 33221  01111            1223456677899999999999998854 488889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH----HHH-----
Q 010994          278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP----NAV-----  348 (496)
Q Consensus       278 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l-----  348 (496)
                      -..+|...|.+..|+.-++....... .+..++.-+-..+...|+.+.++...++..+.  .||...+    ..+     
T Consensus       195 Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K  271 (504)
T KOG0624|consen  195 RAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVK  271 (504)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHH
Confidence            99999999999999988885554443 66677777888889999999999999888875  4554322    111     


Q ss_pred             ----HHHHHhcCchhHHHHHHHHHHhcCCCCCHh---HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHH
Q 010994          349 ----IIGYCNNGLVQNAEAILEDLVEKGKATTPN---SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVI  420 (496)
Q Consensus       349 ----~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~  420 (496)
                          +....+.+++.++++-.+...+..+.-...   .+..+-.++...|++.+|++.-.+++.       +.|+ ..++
T Consensus       272 ~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~-------~d~~dv~~l  344 (504)
T KOG0624|consen  272 SLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD-------IDPDDVQVL  344 (504)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh-------cCchHHHHH
Confidence                122345677888888888777765442233   344555677788899999999999986       6665 7788


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994          421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM  453 (496)
Q Consensus       421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  453 (496)
                      .--..+|.-...++.|..-|+...+..+.+...
T Consensus       345 ~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~  377 (504)
T KOG0624|consen  345 CDRAEAYLGDEMYDDAIHDYEKALELNESNTRA  377 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence            888889988889999999888877755554433

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=5.3e-06  Score=75.48  Aligned_cols=399  Identities=7%  Similarity=-0.064  Sum_probs=230.3

Q ss_pred             HHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHH
Q 010994           70 RDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTD  148 (496)
Q Consensus        70 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~  148 (496)
                      .+.+..|+++.|+..|-+.+...+  .+.-.+......+...|++++|.+--.+..+..|+ ...|+....++.-.|+++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~p--~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLSP--TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccCC--CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence            455678899999999988887652  23444455577888889999988887777777786 778888888888889999


Q ss_pred             HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC---cHHHHHHHHHHCC---CCCChhhHHHHHHHHhhcC-------
Q 010994          149 KALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE---KVPDVLTEMKAKN---IFPDNFSYRICINSYGARS-------  215 (496)
Q Consensus       149 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~---~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~~-------  215 (496)
                      +|+.-|.+=.+... -|...++-+..++.......   .--.++..+....   ......+|..++...-+..       
T Consensus        88 eA~~ay~~GL~~d~-~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l  166 (539)
T KOG0548|consen   88 EAILAYSEGLEKDP-SNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL  166 (539)
T ss_pred             HHHHHHHHHhhcCC-chHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence            99999988776632 25666777777662111000   0001111111100   0001112222222221110       


Q ss_pred             ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cCChH----HHHHHHHHHHH-hcccCccchHHHHHHHHHhcCCHH
Q 010994          216 DLEGMEIILREMESQPHIVLDWSTYASAAHFYIK-ANLID----KASDVLKKAEE-RLEQKDGIGYNFLISLYASLGNKS  289 (496)
Q Consensus       216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~~~~----~a~~~~~~m~~-~~~~~~~~~~~~l~~~~~~~~~~~  289 (496)
                      +.+...+..-.+. ..+..    .+...-..... ...+.    .......++.+ .....-..-...+..+..+..+++
T Consensus       167 ~d~r~m~a~~~l~-~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~  241 (539)
T KOG0548|consen  167 NDPRLMKADGQLK-GVDEL----LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE  241 (539)
T ss_pred             ccHHHHHHHHHHh-cCccc----cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence            0111111111110 00000    00000000000 00000    00000000000 000011133567788888899999


Q ss_pred             HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH-------HHHHHHHhcCchhHHH
Q 010994          290 EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN-------AVIIGYCNNGLVQNAE  362 (496)
Q Consensus       290 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~~~g~~~~a~  362 (496)
                      .+++-+.......  .+..-++....+|...|.+..+........+.|-. ...-|+       .+..+|.+.++++.|+
T Consensus       242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai  318 (539)
T KOG0548|consen  242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI  318 (539)
T ss_pred             HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence            9999998777665  45555677778888888888888877777766532 112222       2334666778899999


Q ss_pred             HHHHHHHhcCCCCCHhHHH-------------------------HHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 010994          363 AILEDLVEKGKATTPNSWA-------------------------VVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP  417 (496)
Q Consensus       363 ~~~~~~~~~~~~p~~~~~~-------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~  417 (496)
                      ..|.+.......|+..+=.                         .-...+.+.|++..|+..|.+++.      ..+-|.
T Consensus       319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk------r~P~Da  392 (539)
T KOG0548|consen  319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK------RDPEDA  392 (539)
T ss_pred             HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh------cCCchh
Confidence            9998877654444433211                         113567889999999999999997      334466


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHH
Q 010994          418 KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETK  487 (496)
Q Consensus       418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~  487 (496)
                      ..|..-.-+|.+.|.+..|..-.+...+..|+.+..|.-=..++....  +.|++.|++..+.  .|+..-+
T Consensus       393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~  462 (539)
T KOG0548|consen  393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEA  462 (539)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHH
Confidence            788888889999999999999888777766665555544443333333  6788888877663  3555443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.92  E-value=6e-06  Score=86.88  Aligned_cols=335  Identities=10%  Similarity=-0.052  Sum_probs=207.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC--C----CCCh--hhHHHHHHH
Q 010994          139 NCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN--I----FPDN--FSYRICINS  210 (496)
Q Consensus       139 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~----~p~~--~~~~~li~~  210 (496)
                      ......|+++.+...++.+.......+..........+...|+++++..++......-  .    .+..  .....+...
T Consensus       382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~  461 (903)
T PRK04841        382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV  461 (903)
T ss_pred             HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence            3445567777777777665221111233333445556677899999999998875531  1    1111  112223345


Q ss_pred             HhhcCChHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhccc---C--ccchHHHHHHH
Q 010994          211 YGARSDLEGMEIILREMESQPHIVLDW----STYASAAHFYIKANLIDKASDVLKKAEERLEQ---K--DGIGYNFLISL  281 (496)
Q Consensus       211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---~--~~~~~~~l~~~  281 (496)
                      +...|+++.|...+++.. ......+.    ...+.+...+...|++++|...+++.......   +  ...++..+...
T Consensus       462 ~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        462 AINDGDPEEAERLAELAL-AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHhCCCHHHHHHHHHHHH-hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            667899999999998876 32111221    23455667788899999999999887643211   1  12345566778


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCC---CC----chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CC--CcccHHHHHH
Q 010994          282 YASLGNKSEVLRLWDLEKTACKR---YI----NRDYITMLEALMKLGEHEEAEKVLKEWELSGN--SY--DTRIPNAVII  350 (496)
Q Consensus       282 ~~~~~~~~~a~~~~~~~~~~~~~---~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~--~~~~~~~l~~  350 (496)
                      +...|++++|...++........   ++    ...+..+...+...|++++|...+.+......  .+  ....+..+..
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  620 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK  620 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence            88999999999998865543211   11    12344555667778999999999888765311  11  1233444566


Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCC-CHhHH-----HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH---HHHH
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKAT-TPNSW-----AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP---KVIT  421 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~-----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~  421 (496)
                      .+...|+.+.|...+.+........ ....+     ...+..+...|+.+.|.+++.....     .......   ..+.
T Consensus       621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~-----~~~~~~~~~~~~~~  695 (903)
T PRK04841        621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPK-----PEFANNHFLQGQWR  695 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCC-----CCCccchhHHHHHH
Confidence            7778999999999998875421110 11111     1122445568899999988777543     1111111   1234


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhc-----CCC-CHHHHHHHHHHHHhCC--CcHHHHHHHHHhCC
Q 010994          422 SILSKLGDEGSVQDVEAFVAALRTV-----IPM-NRQMYHAFIKANIRNG--KGVDELLDSMKADG  479 (496)
Q Consensus       422 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g  479 (496)
                      .+..++...|+.++|...++.....     .+. ...++..+..++.+.|  ++|...+.+..+..
T Consensus       696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            5667788899999999999876552     111 2346777888888999  68888888877543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.92  E-value=1.6e-06  Score=84.26  Aligned_cols=374  Identities=9%  Similarity=-0.039  Sum_probs=233.8

Q ss_pred             ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010994           77 RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFR  155 (496)
Q Consensus        77 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~  155 (496)
                      +...|+..|-...+..+  .-...+..+...|+...+...|.+.|+.+.+.++ +...+....+.|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            36667777766666542  3345788888999999999999999999999887 68889999999999999999999844


Q ss_pred             HHHHCCCC-CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC
Q 010994          156 KMKEMGIA-LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIV  234 (496)
Q Consensus       156 ~m~~~g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~  234 (496)
                      ..-+.... .-...|....-.|.+.++..++..-|+...+..+ -|...|..+..+|.+.|++..|.++|.+.. ..++ 
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs-~LrP-  627 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKAS-LLRP-  627 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhH-hcCc-
Confidence            43332110 0122344445567788899999999998887543 367889999999999999999999998886 5443 


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc------cCccchHHHHHHHHHhcCCHHHHHHHHHHHHh-------h
Q 010994          235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLE------QKDGIGYNFLISLYASLGNKSEVLRLWDLEKT-------A  301 (496)
Q Consensus       235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~  301 (496)
                      .++..--.....-+..|.+.+|...+..+.....      .--..++-.+...+...|-...+.++++....       .
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h  707 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH  707 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            2222222333455667888888888887644211      11122333333333333333333333332221       1


Q ss_pred             cCCCCchhHHHHHHHHH-----------------------hcCCH---H---HHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994          302 CKRYINRDYITMLEALM-----------------------KLGEH---E---EAEKVLKEWELSGNSYDTRIPNAVIIGY  352 (496)
Q Consensus       302 ~~~~~~~~~~~l~~~~~-----------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (496)
                      ....+...|..+..+|.                       ..+..   +   -+.+.+-.-.+  ...+..+|..++..|
T Consensus       708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGiny  785 (1238)
T KOG1127|consen  708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINY  785 (1238)
T ss_pred             hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHH
Confidence            11112222222222211                       11111   1   01111111001  122344454454444


Q ss_pred             Hh--------cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 010994          353 CN--------NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL  424 (496)
Q Consensus       353 ~~--------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~  424 (496)
                      .+        ..+...|...+.+.++..-. +..+|+.|... ...|++.-|...|-+.+.      ..+-+..+|..+.
T Consensus       786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~------sep~~~~~W~Nlg  857 (1238)
T KOG1127|consen  786 LRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRF------SEPTCHCQWLNLG  857 (1238)
T ss_pred             HHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhh------ccccchhheeccc
Confidence            43        12334677888877765333 77788887766 666888889888888775      4445667888888


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          425 SKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       425 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      -.+....+++.|...|.+.....|.+...|-.........|
T Consensus       858 vL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG  898 (1238)
T KOG1127|consen  858 VLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVG  898 (1238)
T ss_pred             eeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHH
Confidence            88899999999999999999888888887755544444444

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.88  E-value=4.8e-07  Score=82.76  Aligned_cols=222  Identities=10%  Similarity=0.003  Sum_probs=134.9

Q ss_pred             HHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHH
Q 010994          176 YSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK  255 (496)
Q Consensus       176 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  255 (496)
                      +.+.|+..+|.-.|+..++.+. -+...|..|......+++-..|+..+++.. +.++ -+..+.-.|...|...|.-..
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl-~LdP-~NleaLmaLAVSytNeg~q~~  371 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCL-ELDP-TNLEALMALAVSYTNEGLQNQ  371 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHH-hcCC-ccHHHHHHHHHHHhhhhhHHH
Confidence            4566777777777777766532 255667777777777777777777777776 5554 566666677777777777777


Q ss_pred             HHHHHHHHHHhcccC--------ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHhcCCHHHH
Q 010994          256 ASDVLKKAEERLEQK--------DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-RYINRDYITMLEALMKLGEHEEA  326 (496)
Q Consensus       256 a~~~~~~m~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a  326 (496)
                      |.+.++.-+...++.        +...-..  ..+..........++|-.+....+ .+|...+..|.-.|.-.|++++|
T Consensus       372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            777777664433210        0000000  011111122333444433333332 46666677777777777777777


Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          327 EKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTP-NSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+.|+.+.... +-|..+||.|...++...+.++|+..|++.++.  .|+. .+...|..+|...|.+++|...|-.++.
T Consensus       450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            77777776653 225667777777777777777777777777764  3332 3455566677777777777777777666

>PLN02789 farnesyltranstransferase

Probab=98.87  E-value=3.2e-06  Score=75.48  Aligned_cols=200  Identities=10%  Similarity=0.007  Sum_probs=96.4

Q ss_pred             CHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC--CcHHHH
Q 010994          113 GFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQR-QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY--EKVPDV  188 (496)
Q Consensus       113 ~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~--~~a~~~  188 (496)
                      +.+.|+...+.+....| +..+|+..-.++.+.| ++++++..++++.+.+.+ +..+|+.....+.+.|+.  +++..+
T Consensus        52 ~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~  130 (320)
T PLN02789         52 RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEF  130 (320)
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHH
Confidence            34444444444444444 3444544444444444 456666666666554333 444455444444444432  345555


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc---CC----hHHHHHHHH
Q 010994          189 LTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA---NL----IDKASDVLK  261 (496)
Q Consensus       189 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---~~----~~~a~~~~~  261 (496)
                      ++++.+... -|..+|+...-++...|+++++++.++++. +.++ -+..+|+.....+.+.   |.    .+++.....
T Consensus       131 ~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I-~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~  207 (320)
T PLN02789        131 TRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLL-EEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI  207 (320)
T ss_pred             HHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence            555555432 244555555555555566666666666665 4443 4444454444333332   11    234555554


Q ss_pred             HHHHhcccCccchHHHHHHHHHhc----CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010994          262 KAEERLEQKDGIGYNFLISLYASL----GNKSEVLRLWDLEKTACKRYINRDYITMLEALM  318 (496)
Q Consensus       262 ~m~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  318 (496)
                      +++...+ -|...|+-+...+...    ++..+|.+.+.......+ .+......++..|+
T Consensus       208 ~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~  266 (320)
T PLN02789        208 DAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLC  266 (320)
T ss_pred             HHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHH
Confidence            5544333 5556666666666552    233445555554433222 33344444555544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.85  E-value=5e-07  Score=90.57  Aligned_cols=205  Identities=15%  Similarity=0.157  Sum_probs=152.2

Q ss_pred             CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 010994          270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR----YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP  345 (496)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  345 (496)
                      .+...|-..|....+.++.++|.++.++.......    --.-.|.++++.-...|.-+...++|+++.+.  .....+|
T Consensus      1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred             CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence            44567888888888888888888888877665431    11134666666666777778888888888775  2234567


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC---HHHHHH
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD---PKVITS  422 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~  422 (496)
                      ..|...|.+.+.+++|.++++.|.++-- -....|...+..+.++++-+.|..++.++++       .-|-   .....-
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~-------~lPk~eHv~~Isk 1605 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALK-------SLPKQEHVEFISK 1605 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHh-------hcchhhhHHHHHH
Confidence            7888888888888888888888886522 3667888888888888888888888888886       3333   234455


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCCh
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDE  484 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~  484 (496)
                      .+..-.+.|+.+.+..+|+......|.....|+.+++.-.++|  +.+.++|++....++.|-.
T Consensus      1606 fAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kk 1669 (1710)
T KOG1070|consen 1606 FAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKK 1669 (1710)
T ss_pred             HHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhH
Confidence            5556677888888888888887778888888888888888888  6777888888888777643

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=1.3e-05  Score=67.47  Aligned_cols=295  Identities=13%  Similarity=0.080  Sum_probs=207.8

Q ss_pred             CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHH-HH
Q 010994           96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYND-IM  173 (496)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-l~  173 (496)
                      +....++..+..+.+..+++.|++++..-.+..| +......|..+|....++..|...++++-..  .|...-|.. -.
T Consensus         8 i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~A   85 (459)
T KOG4340|consen    8 IPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQA   85 (459)
T ss_pred             CCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHH
Confidence            3444577778888999999999999999888877 7777888999999999999999999999775  455555543 24


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHH--HHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC
Q 010994          174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICI--NSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN  251 (496)
Q Consensus       174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  251 (496)
                      +.+.+.+.+..|+.+...|...   |+...-..-+  ......+|+..+..++++.. ..   -+..+.+.......+.|
T Consensus        86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp-~e---n~Ad~~in~gCllykeg  158 (459)
T KOG4340|consen   86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLP-SE---NEADGQINLGCLLYKEG  158 (459)
T ss_pred             HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhcc-CC---Cccchhccchheeeccc
Confidence            5667888999999999888653   2322211112  22345788888999988886 22   23444445666678999


Q ss_pred             ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-------------CCch--------hH
Q 010994          252 LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR-------------YINR--------DY  310 (496)
Q Consensus       252 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------------~~~~--------~~  310 (496)
                      +.+.|.+-|+...+.+--.....|+..+ +..+.|+.+.|++...++...|.+             +|..        ..
T Consensus       159 qyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~  237 (459)
T KOG4340|consen  159 QYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQ  237 (459)
T ss_pred             cHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHH
Confidence            9999999999987765435566777655 455778999999999888776652             1211        12


Q ss_pred             HHHHHH-------HHhcCCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHH
Q 010994          311 ITMLEA-------LMKLGEHEEAEKVLKEWELS-GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAV  382 (496)
Q Consensus       311 ~~l~~~-------~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  382 (496)
                      +.++.+       +.+.|+++.|.+.+-.|.-+ ....|+.|...+.-.- -.+++-...+-+.-+.+.++- ...||..
T Consensus       238 Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFAN  315 (459)
T KOG4340|consen  238 SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF-PPETFAN  315 (459)
T ss_pred             HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC-ChHHHHH
Confidence            233333       45678899998888887633 2245666665543221 245565666666666666554 5678999


Q ss_pred             HHHHHHhcCChHHHHHHHHH
Q 010994          383 VAAGYFDAGKTERGFQCMKA  402 (496)
Q Consensus       383 l~~~~~~~~~~~~a~~~~~~  402 (496)
                      ++-.||+..-++.|..++.+
T Consensus       316 lLllyCKNeyf~lAADvLAE  335 (459)
T KOG4340|consen  316 LLLLYCKNEYFDLAADVLAE  335 (459)
T ss_pred             HHHHHhhhHHHhHHHHHHhh
Confidence            99999999999988887766

>PLN02789 farnesyltranstransferase

Probab=98.83  E-value=9.7e-06  Score=72.40  Aligned_cols=185  Identities=9%  Similarity=-0.021  Sum_probs=78.1

Q ss_pred             cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH--HH
Q 010994          214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN-LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNK--SE  290 (496)
Q Consensus       214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~--~~  290 (496)
                      .++.++|+.+..++. ..++ -+..+|+....++...| ++++++..++++.+..+ .+..+|+.....+.+.|+.  ++
T Consensus        50 ~e~serAL~lt~~aI-~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np-knyqaW~~R~~~l~~l~~~~~~~  126 (320)
T PLN02789         50 DERSPRALDLTADVI-RLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP-KNYQIWHHRRWLAEKLGPDAANK  126 (320)
T ss_pred             CCCCHHHHHHHHHHH-HHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC-cchHHhHHHHHHHHHcCchhhHH
Confidence            334444444444444 2222 22333333333333333 34455555554444332 3333344333333333331  33


Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc---Cc----hhHHHH
Q 010994          291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN---GL----VQNAEA  363 (496)
Q Consensus       291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~~  363 (496)
                      ++.+++.+....+ -+...|+....++...|+++++.+.++++.+.++. |...|+.....+.+.   |.    .++++.
T Consensus       127 el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~  204 (320)
T PLN02789        127 ELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK  204 (320)
T ss_pred             HHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence            4444444444333 33444444444444455555555555555544322 333443333333222   11    123444


Q ss_pred             HHHHHHhcCCCCCHhHHHHHHHHHHhc----CChHHHHHHHHHHH
Q 010994          364 ILEDLVEKGKATTPNSWAVVAAGYFDA----GKTERGFQCMKAAL  404 (496)
Q Consensus       364 ~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~  404 (496)
                      ...+++...+. |...|+.+...+...    ++..+|.+.+.+..
T Consensus       205 y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~  248 (320)
T PLN02789        205 YTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVL  248 (320)
T ss_pred             HHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhh
Confidence            44455554433 455555555555442    22344555555544

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.80  E-value=5.3e-07  Score=84.69  Aligned_cols=216  Identities=14%  Similarity=0.051  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010994          168 TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFY  247 (496)
Q Consensus       168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  247 (496)
                      .-..+...+...|-...|..+|++..         .|.-+|.+|+..|+.++|..+..+.. +  -+|+...|..+.+..
T Consensus       400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~l-e--k~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQEL-E--KDPDPRLYCLLGDVL  467 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHh-c--CCCcchhHHHhhhhc
Confidence            33456667777788888888887763         46677888888888888888887776 4  237777787787777


Q ss_pred             HhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 010994          248 IKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAE  327 (496)
Q Consensus       248 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  327 (496)
                      ....-+++|.++.+..-..       +-..+.....+.++++++.+.|+......+ ....+|.....+..+.+++..|.
T Consensus       468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHH
Confidence            7777778888887764322       112222223346788888888886666555 55677888888888888888888


Q ss_pred             HHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          328 KVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +.|....... +.+...||.+-.+|.+.|+..+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++..
T Consensus       540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            8888877653 225667888888888888888888888888887733 666777888888888888888888888877

>PF12854 PPR_1: PPR repeat

Probab=98.78  E-value=1.1e-08  Score=56.98  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=17.9

Q ss_pred             CCCCChhhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994          196 NIFPDNFSYRICINSYGARSDLEGMEIILREM  227 (496)
Q Consensus       196 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~  227 (496)
                      |+.||..||+++|++|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45555555555555555555555555555554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=2.7e-05  Score=74.52  Aligned_cols=347  Identities=12%  Similarity=0.084  Sum_probs=185.9

Q ss_pred             ChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCC------CCCc-chhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHH
Q 010994           61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGIC------VFAP-CDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQT  133 (496)
Q Consensus        61 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  133 (496)
                      +...|..+.+.|.+.++.+-|.-.+-.|......      .-++ +.-.....+....|.+++|..+|.+..+       
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-------  828 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-------  828 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-------
Confidence            4456777777777777776666555555432110      0112 3334444555677778888887776554       


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHH----------HHCCC------
Q 010994          134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM----------KAKNI------  197 (496)
Q Consensus       134 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m----------~~~~~------  197 (496)
                      |..|=..|-..|.+++|.++-+.--+-  . =..||..-..-+-..+|.+.|++.|++.          .....      
T Consensus       829 ~DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y  905 (1416)
T KOG3617|consen  829 YDLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY  905 (1416)
T ss_pred             HHHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence            333445566678888887776543221  1 2345555555566666777776666542          11100      


Q ss_pred             ---CCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccch
Q 010994          198 ---FPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG  274 (496)
Q Consensus       198 ---~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  274 (496)
                         ..|...|..-..-.-..|+.|.|+.++...+ +         |-.+++..|-.|+.++|-++-++      .-|...
T Consensus       906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-D---------~fs~VrI~C~qGk~~kAa~iA~e------sgd~AA  969 (1416)
T KOG3617|consen  906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-D---------YFSMVRIKCIQGKTDKAARIAEE------SGDKAA  969 (1416)
T ss_pred             HHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-h---------hhhheeeEeeccCchHHHHHHHh------cccHHH
Confidence               1122222233333344566666666666554 1         33355555566666666666554      245566


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcC------CCCchhHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 010994          275 YNFLISLYASLGNKSEVLRLWDLEKTACK------RYINRDYITMLEALM--KLGEHEEAEKVLKEWELSGNSYDTRIPN  346 (496)
Q Consensus       275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~  346 (496)
                      ...+.+.|-..|++.+|..+|.+...-..      ..+.  -..|...+.  ...+.-.|.++|++.-   .     -..
T Consensus       970 cYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~--~d~L~nlal~s~~~d~v~aArYyEe~g---~-----~~~ 1039 (1416)
T KOG3617|consen  970 CYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDM--KDRLANLALMSGGSDLVSAARYYEELG---G-----YAH 1039 (1416)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHhhcCchhHHHHHHHHHHcc---h-----hhh
Confidence            66778888888888888888765432111      1111  011111221  1223334444444321   1     112


Q ss_pred             HHHHHHHhcCchhHHHHHHH--------HHH--hcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhh-----h---
Q 010994          347 AVIIGYCNNGLVQNAEAILE--------DLV--EKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVY-----V---  408 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~--------~~~--~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~---  408 (496)
                      .-+..|-+.|.+.+|+++--        +++  +.....|+...+.-..-++...++++|..++..+.+-.     .   
T Consensus      1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred             HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            33445777777777765421        112  22333466677777777777777787777766555400     0   


Q ss_pred             -------------cCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHH
Q 010994          409 -------------EGKGWKPDP----KVITSILSKLGDEGSVQDVEAFVAAL  443 (496)
Q Consensus       409 -------------~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~  443 (496)
                                   ....-.|+.    .....+...|.++|.+..|-+-|.+.
T Consensus      1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred             CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence                         011122333    34556667888888888887766544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.76  E-value=1.5e-05  Score=75.31  Aligned_cols=195  Identities=15%  Similarity=0.134  Sum_probs=140.1

Q ss_pred             HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC
Q 010994          207 CINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLG  286 (496)
Q Consensus       207 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~  286 (496)
                      .+.+......+.+|+.+++.++ +...  -..-|..+...|+..|+++.|.++|.+.         ..++-.|..|.+.|
T Consensus       738 aieaai~akew~kai~ildniq-dqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~  805 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQ-DQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAG  805 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhh-hhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccc
Confidence            4455666788888999998887 4433  3345777889999999999999998762         34666788899999


Q ss_pred             CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHH
Q 010994          287 NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILE  366 (496)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  366 (496)
                      +|+.|.++-.+.  .++......|..-..-+-..|++.+|++++-.+.    .|     ..-|.+|-+.|..+..+++..
T Consensus       806 kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p-----~~aiqmydk~~~~ddmirlv~  874 (1636)
T KOG3616|consen  806 KWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EP-----DKAIQMYDKHGLDDDMIRLVE  874 (1636)
T ss_pred             cHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cc-----hHHHHHHHhhCcchHHHHHHH
Confidence            999998876543  3333444556666666778889999888875442    23     346788899999988888776


Q ss_pred             HHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994          367 DLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA  441 (496)
Q Consensus       367 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  441 (496)
                      +-.-.   .-..|...+..-|...|+...|...|-++-.              |.+-++.|...+-|++|.++-+
T Consensus       875 k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d--------------~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  875 KHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD--------------FKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             HhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh--------------HHHHHHHhhhhhhHHHHHHHHh
Confidence            54321   1234667778888889999999888877654              5566677777777887776654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.73  E-value=4e-06  Score=72.60  Aligned_cols=189  Identities=13%  Similarity=0.021  Sum_probs=123.1

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc---chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch--h
Q 010994          235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG---IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR--D  309 (496)
Q Consensus       235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~  309 (496)
                      .....+..+...+...|++++|...|+++....+ .+.   .++..+..++...|++++|...++......+.....  .
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP-FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            5566777788889999999999999999877543 222   466778888999999999999999888776632222  3


Q ss_pred             HHHHHHHHHhc--------CCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHH
Q 010994          310 YITMLEALMKL--------GEHEEAEKVLKEWELSGNSYDTR-IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW  380 (496)
Q Consensus       310 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  380 (496)
                      +..+..++...        |+.++|...++.+.+.  .|+.. .+..+... .   ....      ...        ...
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~---~~~~------~~~--------~~~  169 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-D---YLRN------RLA--------GKE  169 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-H---HHHH------HHH--------HHH
Confidence            44455555544        6677788888777765  23322 22111111 0   0000      000        011


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 010994          381 AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI  447 (496)
Q Consensus       381 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  447 (496)
                      ..+...+.+.|++++|+..+++++..+   .+.+.....+..+..++...|++++|..+++.+....
T Consensus       170 ~~~a~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       170 LYVARFYLKRGAYVAAINRFETVVENY---PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHC---CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            245567888888888888888888711   1112234677788888888888888888888776643

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=0.00029  Score=69.37  Aligned_cols=202  Identities=12%  Similarity=0.074  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010994          167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHF  246 (496)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  246 (496)
                      ..|..+..+-.+.|...+|.+-|-+.      -|+..|..+++...+.|.+++-.+++.-.. +..-+|...+  .||-+
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaR-kk~~E~~id~--eLi~A 1175 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMAR-KKVREPYIDS--ELIFA 1175 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH-HhhcCccchH--HHHHH
Confidence            34444555544444444444433221      133445555555555555555555444443 2222233222  34555


Q ss_pred             HHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHH
Q 010994          247 YIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEA  326 (496)
Q Consensus       247 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  326 (496)
                      |++.++..+.+++..       -||......+.+-|...|.++.|.-+|.         +...|..+...+...|++..|
T Consensus      1176 yAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred             HHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHHHHHHHHHHHHHHH
Confidence            555555444333321       1444444445555555555555444443         123344445555555555554


Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          327 EKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL  404 (496)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  404 (496)
                      .+.-++.      .+..+|..+-.+|...+.+.-|     +|--.++.....-...++..|...|-+++.+.+++..+
T Consensus      1240 VD~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1240 VDAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             HHHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            4433222      1344555555555444433322     22222223333444555555555666555555555543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.71  E-value=2e-05  Score=79.62  Aligned_cols=231  Identities=12%  Similarity=0.057  Sum_probs=148.8

Q ss_pred             ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHH
Q 010994          200 DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLD---WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYN  276 (496)
Q Consensus       200 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  276 (496)
                      +...|-..|......+++++|.++.++....-++.-.   ...|.++++.-...|.-+...++|++..+..  .....|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence            3455666777777777777777777776633333221   2345556666666677777777777766531  2234567


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhc
Q 010994          277 FLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YDTRIPNAVIIGYCNN  355 (496)
Q Consensus       277 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~  355 (496)
                      .|...|.+.+..++|.++++.|..... .....|...+..+.+.++.+.|..++.+..+.-++ -........+..-.+.
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence            777777777777788888877777665 55677777777777777777777777777765221 1233334445555667


Q ss_pred             CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH--HHHHHHHHHHhccCCH
Q 010994          356 GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP--KVITSILSKLGDEGSV  433 (496)
Q Consensus       356 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~  433 (496)
                      |+.+.+..+|+......++ -...|+..+..-.+.|+.+.+..+|++++.     .++.|-.  ..|...+..=...|+-
T Consensus      1614 GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~-----l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIE-----LKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred             CCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHh-----cCCChhHhHHHHHHHHHHHHhcCch
Confidence            7777777777777765444 455777777777777777777777777777     5555543  3455555554555555


Q ss_pred             HHHHHH
Q 010994          434 QDVEAF  439 (496)
Q Consensus       434 ~~a~~~  439 (496)
                      +.++.+
T Consensus      1688 ~~vE~V 1693 (1710)
T KOG1070|consen 1688 KNVEYV 1693 (1710)
T ss_pred             hhHHHH
Confidence            544444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=5.9e-05  Score=73.93  Aligned_cols=279  Identities=13%  Similarity=0.091  Sum_probs=192.0

Q ss_pred             cCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHH
Q 010994          112 HGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE  191 (496)
Q Consensus       112 ~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  191 (496)
                      +.++.|.++-++..    .+.+|..+..+-.+.|.+.+|++-|-+  .    .|+..|..+++.+.+.|.|++-...+..
T Consensus      1089 ~~ldRA~efAe~~n----~p~vWsqlakAQL~~~~v~dAieSyik--a----dDps~y~eVi~~a~~~~~~edLv~yL~M 1158 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN----EPAVWSQLAKAQLQGGLVKDAIESYIK--A----DDPSNYLEVIDVASRTGKYEDLVKYLLM 1158 (1666)
T ss_pred             hhHHHHHHHHHhhC----ChHHHHHHHHHHHhcCchHHHHHHHHh--c----CCcHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            44444444433332    367899999999999999999887743  2    2888999999999999999999999888


Q ss_pred             HHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc
Q 010994          192 MKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD  271 (496)
Q Consensus       192 m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  271 (496)
                      .++..-.|...  ..+|-+|++.+++.+.+.++     .   .|+......+.+-|...|.++.|.-+|..         
T Consensus      1159 aRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-----~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------- 1219 (1666)
T KOG0985|consen 1159 ARKKVREPYID--SELIFAYAKTNRLTELEEFI-----A---GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------- 1219 (1666)
T ss_pred             HHHhhcCccch--HHHHHHHHHhchHHHHHHHh-----c---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------
Confidence            88776666554  47888999999988765543     1   26666667788899999999999888764         


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994          272 GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG  351 (496)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (496)
                      ..-|..+...+...|++..|.+.-++.      .+..+|..+..+|...+.+.-|.     |....+-....-..-++.-
T Consensus      1220 vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEY 1288 (1666)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHH
Confidence            455788888899999999998876633      56789999999998877766553     2222222233345678888


Q ss_pred             HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC------CCHHHHHHHHH
Q 010994          352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK------PDPKVITSILS  425 (496)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------p~~~~~~~l~~  425 (496)
                      |-..|-+++.+.+++...-... .....|+.+.-.|++- ++++..+.++-.-.    +-+++      -....|+.++.
T Consensus      1289 Yq~rGyFeElIsl~Ea~LGLER-AHMgmfTELaiLYsky-kp~km~EHl~LFws----RvNipKviRA~eqahlW~Elvf 1362 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGLGLER-AHMGMFTELAILYSKY-KPEKMMEHLKLFWS----RVNIPKVIRAAEQAHLWSELVF 1362 (1666)
T ss_pred             HHhcCcHHHHHHHHHhhhchhH-HHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH----hcchHHHHHHHHHHHHHHHHHH
Confidence            9999999999988887653211 2445677777777664 34444444333322    01111      11234555555


Q ss_pred             HHhccCCHHHH
Q 010994          426 KLGDEGSVQDV  436 (496)
Q Consensus       426 ~~~~~g~~~~a  436 (496)
                      .|.+-..++.|
T Consensus      1363 LY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1363 LYDKYEEYDNA 1373 (1666)
T ss_pred             HHHhhhhhhHH
Confidence            56555555544

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.69  E-value=3.3e-06  Score=70.11  Aligned_cols=118  Identities=8%  Similarity=0.042  Sum_probs=74.7

Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH-HhcCc--hhHH
Q 010994          285 LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY-CNNGL--VQNA  361 (496)
Q Consensus       285 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~a  361 (496)
                      .++.+++...++......+ .+...|..+...|...|++++|...++...+... .+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            4455666666665555554 5556666677777777777777777776666542 2455555555543 45555  3677


Q ss_pred             HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..++++..+.++. +...+..+...+...|++++|+..|+++++
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7777777766555 566666677777777777777777777765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=4.7e-05  Score=68.84  Aligned_cols=149  Identities=15%  Similarity=0.132  Sum_probs=106.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-cccHHHHHHHHHhcCc
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD-TRIPNAVIIGYCNNGL  357 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  357 (496)
                      .-.+...|+.++|+..++.+....+ .+..........+...|+.++|.+.++.+...  .|+ ....-.+..+|.+.|+
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~  389 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCC
Confidence            3345567788888888887666554 55566666677788888888888888888776  344 4555667778888888


Q ss_pred             hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010994          358 VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVE  437 (496)
Q Consensus       358 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  437 (496)
                      ..+|..+++......+. |+..|..|..+|...|+..++.....+                       .+...|++++|.
T Consensus       390 ~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~~~a~~A~AE-----------------------~~~~~G~~~~A~  445 (484)
T COG4783         390 PQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNRAEALLARAE-----------------------GYALAGRLEQAI  445 (484)
T ss_pred             hHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCchHHHHHHHHH-----------------------HHHhCCCHHHHH
Confidence            88888888888776555 778888888888888887777655554                       344568888888


Q ss_pred             HHHHHHHhcCCCCHHHH
Q 010994          438 AFVAALRTVIPMNRQMY  454 (496)
Q Consensus       438 ~~~~~~~~~~~~~~~~~  454 (496)
                      ..+....+....+...|
T Consensus       446 ~~l~~A~~~~~~~~~~~  462 (484)
T COG4783         446 IFLMRASQQVKLGFPDW  462 (484)
T ss_pred             HHHHHHHHhccCCcHHH
Confidence            88877776554444443

>PF12854 PPR_1: PPR repeat

Probab=98.68  E-value=3.5e-08  Score=54.93  Aligned_cols=32  Identities=19%  Similarity=0.458  Sum_probs=15.3

Q ss_pred             CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          372 GKATTPNSWAVVAAGYFDAGKTERGFQCMKAA  403 (496)
Q Consensus       372 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  403 (496)
                      |+.||..||+++|.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34444444444444444444444444444443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=1.4e-06  Score=81.89  Aligned_cols=220  Identities=12%  Similarity=0.116  Sum_probs=168.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHH
Q 010994          232 HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYI  311 (496)
Q Consensus       232 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  311 (496)
                      +.+|-+..-..+...+.+.|-...|..+|+++         ..|...+.+|+..|+..+|..+.....+  .+|+...|.
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc  461 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYC  461 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHH
Confidence            44566666677888899999999999999874         4577788899999999999998886655  448888888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994          312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG  391 (496)
Q Consensus       312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  391 (496)
                      .+++.....--+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.++- -..+|-....+..+.+
T Consensus       462 ~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqle  533 (777)
T KOG1128|consen  462 LLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLE  533 (777)
T ss_pred             HhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHh
Confidence            8888877777788888888765432       1112222233478899999988887765443 5668888888888899


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcH
Q 010994          392 KTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGV  468 (496)
Q Consensus       392 ~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a  468 (496)
                      +++.|.+.|...+.       ..|| ...|+.+-.+|.+.|+..+|...+++..+....+...|...+-...+.|  ++|
T Consensus       534 k~q~av~aF~rcvt-------L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda  606 (777)
T KOG1128|consen  534 KEQAAVKAFHRCVT-------LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDA  606 (777)
T ss_pred             hhHHHHHHHHHHhh-------cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHH
Confidence            99999999999886       5555 4689999999999999999999888777755666777877777778888  778


Q ss_pred             HHHHHHHHh
Q 010994          469 DELLDSMKA  477 (496)
Q Consensus       469 ~~~~~~m~~  477 (496)
                      ++.+.++.+
T Consensus       607 ~~A~~rll~  615 (777)
T KOG1128|consen  607 IKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHH
Confidence            887777653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.67  E-value=5.2e-06  Score=68.95  Aligned_cols=157  Identities=10%  Similarity=0.012  Sum_probs=115.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCch
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLV  358 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  358 (496)
                      +..|...|+++.+....+....    +. .       .+...++.+++...++...+.. +.|...|..+...|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence            4457778887776444322211    10 0       1123566777777777777764 44778888899999999999


Q ss_pred             hHHHHHHHHHHhcCCCCCHhHHHHHHHHH-HhcCC--hHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHH
Q 010994          359 QNAEAILEDLVEKGKATTPNSWAVVAAGY-FDAGK--TERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQ  434 (496)
Q Consensus       359 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  434 (496)
                      ++|...|++..+.++. +...+..+..++ ...|+  .++|.++++++++       ..| +...+..+...+...|+++
T Consensus        90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~-------~dP~~~~al~~LA~~~~~~g~~~  161 (198)
T PRK10370         90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALA-------LDANEVTALMLLASDAFMQADYA  161 (198)
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-------hCCCChhHHHHHHHHHHHcCCHH
Confidence            9999999999887765 777888888764 66677  4899999999987       444 5677888888889999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHH
Q 010994          435 DVEAFVAALRTVIPMNRQMYHA  456 (496)
Q Consensus       435 ~a~~~~~~~~~~~~~~~~~~~~  456 (496)
                      +|...|+++.+..+|+..-+..
T Consensus       162 ~Ai~~~~~aL~l~~~~~~r~~~  183 (198)
T PRK10370        162 QAIELWQKVLDLNSPRVNRTQL  183 (198)
T ss_pred             HHHHHHHHHHhhCCCCccHHHH
Confidence            9999999988887777655443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.67  E-value=0.00011  Score=72.01  Aligned_cols=400  Identities=11%  Similarity=-0.023  Sum_probs=193.5

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC---CHHHHHHHHHH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK---TYQTYGALLNC  140 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~li~~  140 (496)
                      .|..|-..|+...+...|...|+...+...  -.........+.++...+++.|..+.-...+..|   -...|--..-.
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            456666666666666677777777666441  2233344456777777777777776433333322   12223334455


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH--HHHHhhcCChH
Q 010994          141 YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC--INSYGARSDLE  218 (496)
Q Consensus       141 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l--i~~~~~~~~~~  218 (496)
                      |.+.+++..|..-|+...+..++ |...|..++.+|.+.|.+..|.++|.+....  .|+. +|...  ...-+..|.+.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYk  647 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYK  647 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHH
Confidence            66667777777777776665444 6667777777777777777777777666553  3432 22221  12234456666


Q ss_pred             HHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH-------Hhccc-----------------
Q 010994          219 GMEIILREMESQP-----HIVLDWSTYASAAHFYIKANLIDKASDVLKKAE-------ERLEQ-----------------  269 (496)
Q Consensus       219 ~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~-------~~~~~-----------------  269 (496)
                      +|...+.......     +..--..++-.+...+.-.|-..+|...++.-+       .+...                 
T Consensus       648 eald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~  727 (1238)
T KOG1127|consen  648 EALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFS  727 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHH
Confidence            6655554443110     000011111111111111222222222222111       10000                 


Q ss_pred             ---C------------------------------------------ccchHHHHHHHHHh--------cCCHHHHHHHHH
Q 010994          270 ---K------------------------------------------DGIGYNFLISLYAS--------LGNKSEVLRLWD  296 (496)
Q Consensus       270 ---~------------------------------------------~~~~~~~l~~~~~~--------~~~~~~a~~~~~  296 (496)
                         |                                          +..+|..++..|.+        ..+...|+..+.
T Consensus       728 q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~K  807 (1238)
T KOG1127|consen  728 QEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCK  807 (1238)
T ss_pred             HhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHH
Confidence               1                                          11222222222211        001122333333


Q ss_pred             HHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC
Q 010994          297 LEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT  376 (496)
Q Consensus       297 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  376 (496)
                      ...+... .+..+|+.+.- ....|.+.-|...|-+-.... +....+|..+...+.+..+++.|...|...+...+. |
T Consensus       808 kaV~L~a-nn~~~WnaLGV-lsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-n  883 (1238)
T KOG1127|consen  808 KAVSLCA-NNEGLWNALGV-LSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-N  883 (1238)
T ss_pred             HHHHHhh-ccHHHHHHHHH-hhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhhhcCch-h
Confidence            3332222 22222332222 233344444444443333221 223445555555566677888888888887776554 6


Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHH----------HHHHHHHHHhc
Q 010994          377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD----------VEAFVAALRTV  446 (496)
Q Consensus       377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~----------a~~~~~~~~~~  446 (496)
                      ...|-.........|+.-++..+|..-.+..+ +.|-.|...-+.+...-....|+.++          |.-.++....+
T Consensus       884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~-~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~  962 (1238)
T KOG1127|consen  884 LVQWLGEALIPEAVGRIIERLILFAHSDELCS-KEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLG  962 (1238)
T ss_pred             hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhc-cccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhc
Confidence            66777666666677777777777776333111 23344444444433333444455443          33334444445


Q ss_pred             CCCCHHHHHHHHHHHHhCC--CcHHHHHHH
Q 010994          447 IPMNRQMYHAFIKANIRNG--KGVDELLDS  474 (496)
Q Consensus       447 ~~~~~~~~~~l~~~~~~~g--~~a~~~~~~  474 (496)
                      .|.+...|...+...-+.+  ++|.+...+
T Consensus       963 ~p~~~fAy~~~gstlEhL~ey~~a~ela~R  992 (1238)
T KOG1127|consen  963 HPQLCFAYAANGSTLEHLEEYRAALELATR  992 (1238)
T ss_pred             CcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            6666777777766666665  455544444

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.67  E-value=2.5e-06  Score=66.89  Aligned_cols=109  Identities=11%  Similarity=-0.099  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL  424 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~  424 (496)
                      +......+...|++++|...|+......+. +...|..+...+...|++++|+..|++++.      --+.+...+..+.
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~------l~p~~~~a~~~lg   99 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALM------LDASHPEPVYQTG   99 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCCcHHHHHHH
Confidence            344556666777777777777777666544 666677777777777777777777777765      2233456666666


Q ss_pred             HHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          425 SKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       425 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                      .++...|++++|...|+......|.++..|.....+
T Consensus       100 ~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~  135 (144)
T PRK15359        100 VCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNA  135 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            677777777777777777666666666666554443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.66  E-value=7.6e-06  Score=70.88  Aligned_cols=187  Identities=10%  Similarity=-0.081  Sum_probs=131.1

Q ss_pred             CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC-C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccc--h
Q 010994          199 PDNFSYRICINSYGARSDLEGMEIILREMESQPHIV-L-DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGI--G  274 (496)
Q Consensus       199 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~  274 (496)
                      .....+..+...+...|+++.|...|+++. ...+. | ...++..+..++...|++++|...++++.+..+.....  +
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~-~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALE-SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            345667788888999999999999999987 43321 1 12466778899999999999999999998765422221  4


Q ss_pred             HHHHHHHHHhc--------CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 010994          275 YNFLISLYASL--------GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN  346 (496)
Q Consensus       275 ~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  346 (496)
                      +..+..++...        |+.++|.+.++......+ .+...+..+.....    ...      ....        ...
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~a~~~~~~----~~~------~~~~--------~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYP-NSEYAPDAKKRMDY----LRN------RLAG--------KEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCC-CChhHHHHHHHHHH----HHH------HHHH--------HHH
Confidence            55566666654        788999999998877655 22222222211110    000      0000        112


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCC-C-CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKA-T-TPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+...|.+.|++++|...++...+..+. | ....+..+..++...|++++|..+++.+..
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~  231 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA  231 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4666788999999999999999876432 2 356888999999999999999999888765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=3.9e-05  Score=73.50  Aligned_cols=231  Identities=17%  Similarity=0.184  Sum_probs=110.9

Q ss_pred             hHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CC--------CCChhHHHHHHHHH
Q 010994          106 DLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEM-GI--------ALSTLTYNDIMCLY  176 (496)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~p~~~~~~~l~~~~  176 (496)
                      ..|...|+.+.|.+-.+.+..    ..+|..+...|.+..+.+-|.-.+-.|... |.        .|+ .+=..+.-..
T Consensus       736 SfyvtiG~MD~AfksI~~IkS----~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLA  810 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFIKS----DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLA  810 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHHhh----hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHH
Confidence            445566666666655554443    456666666666666666666555555321 10        111 1111222223


Q ss_pred             HhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010994          177 SKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKA  256 (496)
Q Consensus       177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  256 (496)
                      ...|-.++|+.+|.+.++.         ..|=..|...|.+++|.++-+.-. .-..   ..||......+-..+|.+.|
T Consensus       811 ieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D-RiHL---r~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  811 IELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD-RIHL---RNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc-ceeh---hhhHHHHHHHHHhhccHHHH
Confidence            3445555666666555442         223334555566666655544322 1111   23444455555555666666


Q ss_pred             HHHHHHHHHh----------cc---------cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994          257 SDVLKKAEER----------LE---------QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL  317 (496)
Q Consensus       257 ~~~~~~m~~~----------~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  317 (496)
                      ++.|++....          .+         ..|...|.--...+-..|+.+.|+.+|...         ..|.++++..
T Consensus       878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A---------~D~fs~VrI~  948 (1416)
T KOG3617|consen  878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA---------KDYFSMVRIK  948 (1416)
T ss_pred             HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh---------hhhhhheeeE
Confidence            6666542110          00         011111222222222333333333333311         2233444444


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHH
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLV  369 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (496)
                      |-.|+.++|.++-++-      -|....-.+.+.|-..|++.+|...|.+..
T Consensus       949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            4455555555444321      244555667788888888888888887654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.65  E-value=1.8e-05  Score=65.59  Aligned_cols=159  Identities=13%  Similarity=0.011  Sum_probs=112.0

Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010994          170 NDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK  249 (496)
Q Consensus       170 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  249 (496)
                      ..+-..+...|+-+....+....... ..-|....+..+....+.|++..|...+++.. ...+ +|+.+|+.+.-+|.+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~-~l~p-~d~~~~~~lgaaldq  146 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAA-RLAP-TDWEAWNLLGAALDQ  146 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHh-ccCC-CChhhhhHHHHHHHH
Confidence            55566666777777776666654332 22244455557777788888888888888886 5554 788888888888888


Q ss_pred             cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994          250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV  329 (496)
Q Consensus       250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  329 (496)
                      .|+++.|..-|.+..+..+ .+...++.+...+.-.|+.+.|..++........ -+...-..+.......|+++.|..+
T Consensus       147 ~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i  224 (257)
T COG5010         147 LGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDI  224 (257)
T ss_pred             ccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhh
Confidence            8888888888887776543 5566777777778888888888888876655544 5566666777777778888888776


Q ss_pred             HHHH
Q 010994          330 LKEW  333 (496)
Q Consensus       330 ~~~~  333 (496)
                      ...-
T Consensus       225 ~~~e  228 (257)
T COG5010         225 AVQE  228 (257)
T ss_pred             cccc
Confidence            6543

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.64  E-value=0.00059  Score=66.46  Aligned_cols=405  Identities=14%  Similarity=0.038  Sum_probs=222.4

Q ss_pred             HHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhh--HHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHH
Q 010994           72 LRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLD--LIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTD  148 (496)
Q Consensus        72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~  148 (496)
                      ....+++++|+.....+.++.+  ..  .++.++.  .+.+.|+.++|..+++......+ |..+...+-.+|...|+.+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~P--n~--~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHP--NA--LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCC--Cc--HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence            3466778888888888888762  12  2333333  44578888888888877766654 6777888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC----------hH
Q 010994          149 KALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD----------LE  218 (496)
Q Consensus       149 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----------~~  218 (496)
                      +|..+|+.....  -|+......+..+|.+.+++.+-.+.--+|-+. .+-+...+-++++.....-.          +.
T Consensus        95 ~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~  171 (932)
T KOG2053|consen   95 EAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLA  171 (932)
T ss_pred             HHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence            888888888765  456677777777888877776544444444432 33345555555555443211          23


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010994          219 GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK-KAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDL  297 (496)
Q Consensus       219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~-~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  297 (496)
                      -|.+.++.+..+.|..-+..-.......+...|.+++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.+
T Consensus       172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~  251 (932)
T KOG2053|consen  172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR  251 (932)
T ss_pred             HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence            4556666666444322222222333445566778888888883 333333333444445666777778888888887777


Q ss_pred             HHhhcCCCCchhHHHHHHHH----------------HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH---hcCch
Q 010994          298 EKTACKRYINRDYITMLEAL----------------MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC---NNGLV  358 (496)
Q Consensus       298 ~~~~~~~~~~~~~~~l~~~~----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~  358 (496)
                      ....+. .|   |...+..+                ...+..+...+...+.....   ....|-+-+..+.   .-|+.
T Consensus       252 Ll~k~~-Dd---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~  324 (932)
T KOG2053|consen  252 LLEKGN-DD---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDS  324 (932)
T ss_pred             HHHhCC-cc---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCCh
Confidence            777665 22   22222211                11222333333333222211   1112222222222   23555


Q ss_pred             hHHHHHH-HHHHhc---------------------------CCCCCHh-------HHHHHHHHHHhcC-----ChHHHHH
Q 010994          359 QNAEAIL-EDLVEK---------------------------GKATTPN-------SWAVVAAGYFDAG-----KTERGFQ  398 (496)
Q Consensus       359 ~~a~~~~-~~~~~~---------------------------~~~p~~~-------~~~~l~~~~~~~~-----~~~~a~~  398 (496)
                      +++...| ++.-..                           +..++..       .+...+..-...|     ..+.-..
T Consensus       325 ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a  404 (932)
T KOG2053|consen  325 EEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILA  404 (932)
T ss_pred             HHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHH
Confidence            5544332 211110                           0001111       0111111112222     1233344


Q ss_pred             HHHHHHHhhhcC----CCCCCCHH---------HHHHHHHHHhccCCHHH---HHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010994          399 CMKAALSVYVEG----KGWKPDPK---------VITSILSKLGDEGSVQD---VEAFVAALRTVIPMNRQMYHAFIKANI  462 (496)
Q Consensus       399 ~~~~~~~~~~~~----~~~~p~~~---------~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~  462 (496)
                      ++.+....+...    .+.-|+..         +.+.++..|.+.++...   |.-+++......+-|..+--.+|+.|+
T Consensus       405 ~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~  484 (932)
T KOG2053|consen  405 YVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYS  484 (932)
T ss_pred             HHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            444443333222    12233332         34466778888887764   444555444456777888888999999


Q ss_pred             hCC--CcHHHHHHHHHhCCCCCChhHHHHH
Q 010994          463 RNG--KGVDELLDSMKADGIDEDEETKEIL  490 (496)
Q Consensus       463 ~~g--~~a~~~~~~m~~~g~~p~~~t~~~l  490 (496)
                      -.|  ..|.++++.|--..|.-|..-|-++
T Consensus       485 ~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~  514 (932)
T KOG2053|consen  485 YLGAFPDAYELYKTLDIKNIQTDTLGHLIF  514 (932)
T ss_pred             HhcCChhHHHHHHhcchHHhhhccchHHHH
Confidence            999  7888999888777777776655544

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.64  E-value=4.4e-05  Score=72.29  Aligned_cols=195  Identities=14%  Similarity=0.154  Sum_probs=135.5

Q ss_pred             HHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCH
Q 010994           68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQT  147 (496)
Q Consensus        68 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  147 (496)
                      .+.+-...+.|.+|+.+++.+..+.   .....+..+.+-|...|+++.|.++|.+       ...++-.|..|.+.|++
T Consensus       738 aieaai~akew~kai~ildniqdqk---~~s~yy~~iadhyan~~dfe~ae~lf~e-------~~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQK---TASGYYGEIADHYANKGDFEIAEELFTE-------ADLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhc---cccccchHHHHHhccchhHHHHHHHHHh-------cchhHHHHHHHhccccH
Confidence            3444556678888888888888776   4566677788888899999999988854       34567788889999999


Q ss_pred             HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994          148 DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREM  227 (496)
Q Consensus       148 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~  227 (496)
                      +.|.++-++.  .|.......|-+-..-.-+.|++.+|.++|-...    .|+     ..|..|-+.|..+..+++.++-
T Consensus       808 ~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~  876 (1636)
T KOG3616|consen  808 EDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKH  876 (1636)
T ss_pred             HHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHh
Confidence            9998886554  3445566677777777778888888887765432    244     3566778888888888877766


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 010994          228 ESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWD  296 (496)
Q Consensus       228 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  296 (496)
                      . ...+   ..|...+..-|-..|+...|..-|-+..         -|.+-++.|-.++-|++|.++-+
T Consensus       877 h-~d~l---~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  877 H-GDHL---HDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             C-hhhh---hHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence            4 2111   2344446666777788888877765532         25555666777777777766544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=3.5e-05  Score=63.94  Aligned_cols=117  Identities=22%  Similarity=0.227  Sum_probs=56.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN----  354 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  354 (496)
                      ...|+..|++++|++.....      .+......=+..+.+..+++-|.+.++.|.+..   +..+.+.|..++.+    
T Consensus       115 a~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhcc
Confidence            33455555555555555420      112222222333444555555555555555431   33344444444432    


Q ss_pred             cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          355 NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       355 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+.+..|.-+|++|-++ ..|+..+.+....++...|++++|..+++.++.
T Consensus       186 gek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~  235 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD  235 (299)
T ss_pred             chhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence            23455555555555543 334555555555555555555555555555554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=6.1e-05  Score=62.58  Aligned_cols=247  Identities=13%  Similarity=0.067  Sum_probs=159.2

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHH
Q 010994          140 CYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEG  219 (496)
Q Consensus       140 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~  219 (496)
                      -+.-.|++..++..-+......  -+...-..+.++|...|.+.....-   .+. |-.|.......+......-++.+.
T Consensus        17 n~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~   90 (299)
T KOG3081|consen   17 NYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKS   90 (299)
T ss_pred             HHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHH
Confidence            3344577777776655543331  3455555566777777776554332   222 123333334333333333444443


Q ss_pred             HH-HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994          220 ME-IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLE  298 (496)
Q Consensus       220 a~-~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  298 (496)
                      -. ++.+.+. ......+......-...|++.|++++|++..+.    +  -+......=...+.+..+++-|.+.++.|
T Consensus        91 ~~~~l~E~~a-~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~----~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~m  163 (299)
T KOG3081|consen   91 ILASLYELVA-DSTDGSNLIDLLLAAIIYMHDGDFDEALKALHL----G--ENLEAAALNVQILLKMHRFDLAEKELKKM  163 (299)
T ss_pred             HHHHHHHHHH-hhccchhHHHHHHhhHHhhcCCChHHHHHHHhc----c--chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 3444454 444434434444445678899999999998886    2  22333334455667788899999999988


Q ss_pred             HhhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994          299 KTACKRYINRDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA  374 (496)
Q Consensus       299 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (496)
                      .+.   .+..|.+.+..++.+    .+.+..|.-+|++|.++ ..|+..+.+....++...|++++|..+++....+...
T Consensus       164 q~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~  239 (299)
T KOG3081|consen  164 QQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK  239 (299)
T ss_pred             Hcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence            775   445677767776654    45689999999999775 5788888888999999999999999999999988766


Q ss_pred             CCHhHHHHHHHHHHhcCChHHH-HHHHHHHH
Q 010994          375 TTPNSWAVVAAGYFDAGKTERG-FQCMKAAL  404 (496)
Q Consensus       375 p~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~  404 (496)
                       ++.+...++.+-...|...++ .+.+....
T Consensus       240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk  269 (299)
T KOG3081|consen  240 -DPETLANLIVLALHLGKDAEVTERNLSQLK  269 (299)
T ss_pred             -CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence             777777777777777766554 34444444

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.60  E-value=4.1e-05  Score=76.51  Aligned_cols=239  Identities=11%  Similarity=0.085  Sum_probs=139.4

Q ss_pred             ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChh-hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHH
Q 010994          165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNF-SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASA  243 (496)
Q Consensus       165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  243 (496)
                      +...+..|+..+...+++++|.++.+...+.  .|+.. .|-.+...+...++.+.+..+                  .+
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv------------------~~   89 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL------------------NL   89 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh------------------hh
Confidence            4566777777777778888888877766554  34432 233333345555554443333                  12


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCH
Q 010994          244 AHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH  323 (496)
Q Consensus       244 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  323 (496)
                      +.......++.....++..|.+.+  -+..++..+..+|-+.|+.+++..+|+++....+ .+....+.+...|+.. ++
T Consensus        90 l~~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL  165 (906)
T PRK14720         90 IDSFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DK  165 (906)
T ss_pred             hhhcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hH
Confidence            333333334433344444444422  3344677777777788888888888887777664 6667777777777777 77


Q ss_pred             HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAA  403 (496)
Q Consensus       324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~  403 (496)
                      ++|..++.+....               |...+++..+..+|.++.+..+. +...+                .++.+++
T Consensus       166 ~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-d~d~f----------------~~i~~ki  213 (906)
T PRK14720        166 EKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-DFDFF----------------LRIERKV  213 (906)
T ss_pred             HHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-cchHH----------------HHHHHHH
Confidence            7777777766553               44555666666666666665332 22222                2222222


Q ss_pred             HHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 010994          404 LSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIR  463 (496)
Q Consensus       404 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  463 (496)
                      ..    ..|..--..++.-+-..|...++|+++..+++.+.+..+.|.....-++.+|..
T Consensus       214 ~~----~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        214 LG----HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             Hh----hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence            22    012222233444455566666777777777777777777777777777777763

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.59  E-value=9.5e-06  Score=80.02  Aligned_cols=131  Identities=11%  Similarity=0.013  Sum_probs=89.1

Q ss_pred             CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 010994           96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC  174 (496)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~  174 (496)
                      ..++.+..+..+..+.|.+++|+.+++.+.+..|+ ......+...+.+.+++++|+..+++....... +....+.+..
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~  162 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK  162 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence            34566666666777777777777777777777664 556666777777777777777777777766433 5555666666


Q ss_pred             HHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994          175 LYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME  228 (496)
Q Consensus       175 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~  228 (496)
                      ++.+.|++++|..+|++....+ .-+..++..+..++-..|+.++|...|++..
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~  215 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGL  215 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7777777777777777777632 2235666677777777777777777777765

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.57  E-value=2.2e-05  Score=65.09  Aligned_cols=157  Identities=15%  Similarity=0.079  Sum_probs=104.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 010994          276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN  355 (496)
Q Consensus       276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  355 (496)
                      ..+-..+...|+-+....+........+ .+.......+....+.|++..|...+.+..... ++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            4455566666666666666554333222 333444556677777777777777777776553 55777777777777777


Q ss_pred             CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHH
Q 010994          356 GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD  435 (496)
Q Consensus       356 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  435 (496)
                      |+++.|..-|.+..+..+. +...++.+...+.-.|+.+.|..++..+..      .-.-|..+-..+..+....|++++
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l------~~~ad~~v~~NLAl~~~~~g~~~~  220 (257)
T COG5010         148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYL------SPAADSRVRQNLALVVGLQGDFRE  220 (257)
T ss_pred             cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHh------CCCCchHHHHHHHHHHhhcCChHH
Confidence            7777777777777775444 556677777777777777777777777765      333355666666677777777777


Q ss_pred             HHHHHH
Q 010994          436 VEAFVA  441 (496)
Q Consensus       436 a~~~~~  441 (496)
                      |..+-.
T Consensus       221 A~~i~~  226 (257)
T COG5010         221 AEDIAV  226 (257)
T ss_pred             HHhhcc
Confidence            777654

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.57  E-value=4.1e-05  Score=76.49  Aligned_cols=151  Identities=11%  Similarity=0.039  Sum_probs=81.6

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHH
Q 010994          202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL  281 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  281 (496)
                      ..+..+..+|-+.|+.++|..+++++. +.++ -|..+.|.+...|... +.++|.+++.+....               
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L-~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------  178 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLV-KADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------  178 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHH-hcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence            345555666666666666666666666 4443 5566666666666666 666666666654443               


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCCCCcccHHHHHHHHHhcCchhH
Q 010994          282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS-GNSYDTRIPNAVIIGYCNNGLVQN  360 (496)
Q Consensus       282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~  360 (496)
                      +...+++..+.++|..+....+ .                +++.-.++.+.+... |..--..++-.+-..|...+++++
T Consensus       179 ~i~~kq~~~~~e~W~k~~~~~~-~----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~  241 (906)
T PRK14720        179 FIKKKQYVGIEEIWSKLVHYNS-D----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDE  241 (906)
T ss_pred             HHhhhcchHHHHHHHHHHhcCc-c----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhH
Confidence            3334445555555554444332 1                222222233333222 222223344455566666777777


Q ss_pred             HHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994          361 AEAILEDLVEKGKATTPNSWAVVAAGYF  388 (496)
Q Consensus       361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~  388 (496)
                      +..+++.+.+.... |......++.+|.
T Consensus       242 ~i~iLK~iL~~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        242 VIYILKKILEHDNK-NNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence            77777777776555 5556666666655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.55  E-value=5.1e-06  Score=65.17  Aligned_cols=118  Identities=8%  Similarity=-0.044  Sum_probs=97.7

Q ss_pred             HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994          362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA  441 (496)
Q Consensus       362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  441 (496)
                      ..++++..+.    ++..+......+...|++++|...|+.++.      --+.+...+..+..++...|++++|...|+
T Consensus        13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~   82 (144)
T PRK15359         13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVM------AQPWSWRAHIALAGTWMMLKEYTTAINFYG   82 (144)
T ss_pred             HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            3456666664    333466778899999999999999999987      233466788999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHH
Q 010994          442 ALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILV  491 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~  491 (496)
                      ......|.++..+..+..++.+.|  ++|+..|++..+  +.|+...+..+.
T Consensus        83 ~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~--~~p~~~~~~~~~  132 (144)
T PRK15359         83 HALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIK--MSYADASWSEIR  132 (144)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHH
Confidence            999988999999999999999999  899999999887  568776655443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=6.6e-05  Score=61.87  Aligned_cols=198  Identities=14%  Similarity=0.101  Sum_probs=138.6

Q ss_pred             cCChHHHHHHHHHHHHh---c-ccCccc-hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHH
Q 010994          250 ANLIDKASDVLKKAEER---L-EQKDGI-GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHE  324 (496)
Q Consensus       250 ~~~~~~a~~~~~~m~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  324 (496)
                      ..+.++..+++.++...   | ..++.. .|..++-+....|+.+.|...++.+....+ .+...-..-.--+-..|.++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchh
Confidence            46788888888888543   2 334443 345556667788899999999987777663 33333332233345578899


Q ss_pred             HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          325 EAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL  404 (496)
Q Consensus       325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  404 (496)
                      +|.++++.+.+.. +.|..++-.-+...-..|+.-+|++-+....+.-+ .|...|..+...|...|++++|.-++++++
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~-~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFM-NDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999998875 44666776666667778888888888888777633 488999999999999999999999999988


Q ss_pred             HhhhcCCCCCC-CHHHHHHHHHHHhccC---CHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994          405 SVYVEGKGWKP-DPKVITSILSKLGDEG---SVQDVEAFVAALRTVIPMNRQMYHAF  457 (496)
Q Consensus       405 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~l  457 (496)
                      -       +.| ++..+..+...+.-.|   +.+.|.+++.+..+..+.+.+.+..+
T Consensus       182 l-------~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI  231 (289)
T KOG3060|consen  182 L-------IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGI  231 (289)
T ss_pred             H-------cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHH
Confidence            6       555 4455666666554444   55667788887776555455554433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.53  E-value=7.1e-05  Score=73.99  Aligned_cols=180  Identities=15%  Similarity=0.128  Sum_probs=116.8

Q ss_pred             CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994          270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (496)
                      .+...+..|.....+.|+.++|..+++...+..+ .+......+...+.+.+++++|....++.....+. +......+.
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a  161 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEA  161 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHH
Confidence            4566777777777788888888888877666655 55566677777777888888888888777776422 455566667


Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD  429 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  429 (496)
                      .++.+.|++++|..+|+++...+.. +..++..+..++...|+.++|...|+++++      ...|...-|+.++     
T Consensus       162 ~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~------~~~~~~~~~~~~~-----  229 (694)
T PRK15179        162 KSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD------AIGDGARKLTRRL-----  229 (694)
T ss_pred             HHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hhCcchHHHHHHH-----
Confidence            7777778888888888887774433 466777777788888888888888888776      4445555555443     


Q ss_pred             cCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHHhC
Q 010994          430 EGSVQDVEAFVAALRT-----VIPMNRQMYHAFIKANIRN  464 (496)
Q Consensus       430 ~g~~~~a~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~  464 (496)
                       +++..-..+++.+.-     +.+..+.+...++.-|.+.
T Consensus       230 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        230 -VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             -HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence             223333344444322     1233344455555555443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.51  E-value=0.00089  Score=61.54  Aligned_cols=130  Identities=6%  Similarity=0.004  Sum_probs=85.8

Q ss_pred             CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 010994           96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC  174 (496)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~  174 (496)
                      .+.+.+..+++-+... ..+++...++++....| ....|..-|..-.+.++++...++|.+-...  ..+...|..-+.
T Consensus        18 ~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~   94 (656)
T KOG1914|consen   18 YDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLS   94 (656)
T ss_pred             ccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHH
Confidence            5566666666665554 89999999999998888 5888999999999999999999999987665  236777777776


Q ss_pred             HHHh-cCCCCcHH----HHHHHHH-HCCCCCCh-hhHHHHHHH---------HhhcCChHHHHHHHHHhh
Q 010994          175 LYSK-TGQYEKVP----DVLTEMK-AKNIFPDN-FSYRICINS---------YGARSDLEGMEIILREME  228 (496)
Q Consensus       175 ~~~~-~~~~~~a~----~~~~~m~-~~~~~p~~-~~~~~li~~---------~~~~~~~~~a~~~~~~~~  228 (496)
                      --.+ +|+...+.    +.|+-.. +.|..+-. ..|+..+.-         +..+.+++...++++++.
T Consensus        95 YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral  164 (656)
T KOG1914|consen   95 YVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRAL  164 (656)
T ss_pred             HHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHh
Confidence            5443 34444422    2333333 33544332 234444432         233445677888888887

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.40  E-value=9.8e-06  Score=63.25  Aligned_cols=102  Identities=14%  Similarity=0.026  Sum_probs=69.8

Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      .....+...+...|++++|...|+.+.+.+.. +...+..+...+...|++++|...++.++.      ..+.+...+..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~p~~~~~~~~   90 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAA------LDPDDPRPYFH   90 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCCCChHHHHH
Confidence            44555666677777788888777777766543 666777777777777777787777777765      22334566666


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNR  451 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  451 (496)
                      +...+...|++++|...|+...+..|.+.
T Consensus        91 la~~~~~~g~~~~A~~~~~~al~~~p~~~  119 (135)
T TIGR02552        91 AAECLLALGEPESALKALDLAIEICGENP  119 (135)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            67777777778877777777666544333

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=0.00031  Score=58.11  Aligned_cols=187  Identities=17%  Similarity=0.118  Sum_probs=118.9

Q ss_pred             CChHHHHHHHHHhhcC--CC-CCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994          215 SDLEGMEIILREMESQ--PH-IVLD-WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE  290 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~--~~-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~  290 (496)
                      .+.++..+++.++...  .+ ..++ +..|..++-+....|+.+.|...++++.+.-+ .+..+-..-...+-..|++++
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp-~S~RV~~lkam~lEa~~~~~~  104 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP-GSKRVGKLKAMLLEATGNYKE  104 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHhhchhh
Confidence            3455555555555411  11 2232 44455566666777778888888877766542 222222222223445678888


Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994          291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE  370 (496)
Q Consensus       291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (496)
                      |.++++......+ .|..++..-+...-..|+--+|.+-+....+. +..|...|.-+...|...|++++|.-.++++.-
T Consensus       105 A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  105 AIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            8888887766654 55566665566666667777777777777665 455788888888888888888888888888876


Q ss_pred             cCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHH
Q 010994          371 KGKATTPNSWAVVAAGYFDAG---KTERGFQCMKAALS  405 (496)
Q Consensus       371 ~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~  405 (496)
                      ..+. ++..+..+...+...|   +.+.+.++|.++++
T Consensus       183 ~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk  219 (289)
T KOG3060|consen  183 IQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK  219 (289)
T ss_pred             cCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            5433 5555566665555444   45667888888876

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=0.00016  Score=65.54  Aligned_cols=113  Identities=13%  Similarity=0.067  Sum_probs=52.2

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 010994          319 KLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQ  398 (496)
Q Consensus       319 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~  398 (496)
                      ..|+++.|+..++.+.+.- +-|+.......+.+.+.++..+|.+.++.+....+. .....-.+..+|.+.|++.+|+.
T Consensus       318 ~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~  395 (484)
T COG4783         318 LAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIR  395 (484)
T ss_pred             HhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHH
Confidence            3445555555555544431 112333334444455555555555555555443221 13344444455555555555555


Q ss_pred             HHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010994          399 CMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAF  439 (496)
Q Consensus       399 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  439 (496)
                      .+++...      ..+-|+..|..|..+|...|+..+|...
T Consensus       396 ~L~~~~~------~~p~dp~~w~~LAqay~~~g~~~~a~~A  430 (484)
T COG4783         396 ILNRYLF------NDPEDPNGWDLLAQAYAELGNRAEALLA  430 (484)
T ss_pred             HHHHHhh------cCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence            5555443      3334444555555555555554444443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.32  E-value=1.2e-06  Score=49.68  Aligned_cols=34  Identities=29%  Similarity=0.527  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010994          133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALST  166 (496)
Q Consensus       133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  166 (496)
                      +||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            6888888888888888888888888888888873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.32  E-value=2.5e-05  Score=60.87  Aligned_cols=96  Identities=14%  Similarity=0.122  Sum_probs=67.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994          308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY  387 (496)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  387 (496)
                      .....+...+...|++++|...++.+...+ +.+...+..+...+...|+++.|...+++..+.++. +...+..+...+
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence            445556666677777777777777776653 235566667777777777777777777777766533 566677777777


Q ss_pred             HhcCChHHHHHHHHHHHH
Q 010994          388 FDAGKTERGFQCMKAALS  405 (496)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~  405 (496)
                      ...|++++|...|+++++
T Consensus        96 ~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        96 LALGEPESALKALDLAIE  113 (135)
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            778888888888877776

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.25  E-value=1.8e-06  Score=48.50  Aligned_cols=33  Identities=39%  Similarity=0.598  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 010994          132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL  164 (496)
Q Consensus       132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  164 (496)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777665

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.19  E-value=3.4e-05  Score=70.38  Aligned_cols=119  Identities=12%  Similarity=0.116  Sum_probs=81.0

Q ss_pred             hhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCc
Q 010994          105 LDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEK  184 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~  184 (496)
                      +..+...++++.|+.+|+++.+.+|+..  ..++..+...++-.+|.+++++..+.. +.|...+..-...+.+.++++.
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~pev~--~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~l  252 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERDPEVA--VLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYEL  252 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcCCcHH--HHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHH
Confidence            4455556677777777777777666533  346666666777777777777776542 2356666666677777777777


Q ss_pred             HHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994          185 VPDVLTEMKAKNIFPD-NFSYRICINSYGARSDLEGMEIILREME  228 (496)
Q Consensus       185 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~  228 (496)
                      |+.+.+++...  .|+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus       253 AL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  253 ALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            77777777764  444 3477777777777888877777777665

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.15  E-value=2.3e-06  Score=48.08  Aligned_cols=33  Identities=27%  Similarity=0.487  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCC
Q 010994          167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFP  199 (496)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p  199 (496)
                      .+|+.++.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777776665

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.13  E-value=5.6e-06  Score=46.84  Aligned_cols=33  Identities=27%  Similarity=0.561  Sum_probs=19.2

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT  376 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~  376 (496)
                      +|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            455555555555555555555555555555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.12  E-value=8.9e-05  Score=67.72  Aligned_cols=124  Identities=13%  Similarity=0.072  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994          310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD  389 (496)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  389 (496)
                      ...++..+...++++.|..+++++.+..  |+  ....++..+...++-.+|.+++++..+..+. +...+..-...|.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence            4456666677788888888888887763  33  4455777777777788888888888765443 66667777777888


Q ss_pred             cCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          390 AGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       390 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      .++++.|+.+.+++..       ..|+. .+|..|..+|...|+++.|...++.+.-
T Consensus       247 k~~~~lAL~iAk~av~-------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  247 KKKYELALEIAKKAVE-------LSPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             cCCHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            8888888888888876       56655 5888888888888888888887776544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.11  E-value=0.00014  Score=55.15  Aligned_cols=107  Identities=14%  Similarity=0.160  Sum_probs=56.5

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKA--TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      +..+...+.+.|++++|...|..+.+....  .....+..+...+.+.|+++.|...|+.+....   .+.......+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~   81 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY---PKSPKAPDALLK   81 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC---CCCCcccHHHHH
Confidence            344555555666666666666666554321  012344556666666666666666666665410   011111334555


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY  454 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  454 (496)
                      +..++.+.|+.++|...++.+....|.+....
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            55556666666666666666665555554443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.09  E-value=0.013  Score=57.59  Aligned_cols=224  Identities=13%  Similarity=0.086  Sum_probs=138.6

Q ss_pred             HhhcCHHHHHHHHHhchhcCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHH
Q 010994          109 GRVHGFLSAESYFSNLKDDEKTYQTYGALLNC--YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVP  186 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~  186 (496)
                      ...+++..|.+-..++....||... ..++.+  +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNALY-AKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence            4567888888888888888786432 233333  45788889999888888776655 8888888888899999999999


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-Ch---------HHH
Q 010994          187 DVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN-LI---------DKA  256 (496)
Q Consensus       187 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~---------~~a  256 (496)
                      .+|++..+.  .|+..-...+..+|.+.+++.+-.++--++- + +.+-+...+=++++.+...- ..         .-|
T Consensus        98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~Ly-K-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA  173 (932)
T KOG2053|consen   98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLY-K-NFPKRAYYFWSVISLILQSIFSENELLDPILLALA  173 (932)
T ss_pred             HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-hCCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence            999988764  5667777777888888877765444333332 1 22123333334444444331 11         124


Q ss_pred             HHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHHHHHHHHHH-HHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994          257 SDVLKKAEERL-EQKDGIGYNFLISLYASLGNKSEVLRLWDL-EKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWE  334 (496)
Q Consensus       257 ~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  334 (496)
                      .+.++.+.+.+ ..-+..-...-...+...|++++|++++.. ........+...-+.-+..+...+++.+..++..++.
T Consensus       174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            44444443332 111122222233344567778888888852 2222222333344456677778888888888888888


Q ss_pred             hcCC
Q 010994          335 LSGN  338 (496)
Q Consensus       335 ~~~~  338 (496)
                      ..|.
T Consensus       254 ~k~~  257 (932)
T KOG2053|consen  254 EKGN  257 (932)
T ss_pred             HhCC
Confidence            7753

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.09  E-value=3.7e-05  Score=54.86  Aligned_cols=79  Identities=16%  Similarity=0.235  Sum_probs=64.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCChhHHHHHHHHHHhcCC--------CCcHHHHHHHHHHCCCCCChhhHH
Q 010994          135 GALLNCYVRQRQTDKALSHFRKMKEMGI-ALSTLTYNDIMCLYSKTGQ--------YEKVPDVLTEMKAKNIFPDNFSYR  205 (496)
Q Consensus       135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~~~--------~~~a~~~~~~m~~~~~~p~~~~~~  205 (496)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..-        .-..+.+|++|...+++|+..||+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            4456666677999999999999999999 8999999999998876542        235677888898888999999999


Q ss_pred             HHHHHHhh
Q 010994          206 ICINSYGA  213 (496)
Q Consensus       206 ~li~~~~~  213 (496)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            88877654

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.04  E-value=0.00029  Score=55.52  Aligned_cols=87  Identities=13%  Similarity=0.114  Sum_probs=38.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994          314 LEALMKLGEHEEAEKVLKEWELSGNSYDT--RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG  391 (496)
Q Consensus       314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  391 (496)
                      ...+...|++++|...|+.+......++.  ...-.+...+...|++++|+..++......  .....+......|.+.|
T Consensus        55 A~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g  132 (145)
T PF09976_consen   55 AKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQG  132 (145)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCC
Confidence            34444455555555555555544311111  112233444445555555555554422211  12334444455555555


Q ss_pred             ChHHHHHHHHH
Q 010994          392 KTERGFQCMKA  402 (496)
Q Consensus       392 ~~~~a~~~~~~  402 (496)
                      +.++|...|++
T Consensus       133 ~~~~A~~~y~~  143 (145)
T PF09976_consen  133 DYDEARAAYQK  143 (145)
T ss_pred             CHHHHHHHHHH
Confidence            55555555544

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.99  E-value=0.00029  Score=55.55  Aligned_cols=116  Identities=13%  Similarity=0.056  Sum_probs=53.8

Q ss_pred             cCChHHHHHHHHHHHHhcccC--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc--hhHHHHHHHHHhcCCHHH
Q 010994          250 ANLIDKASDVLKKAEERLEQK--DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN--RDYITMLEALMKLGEHEE  325 (496)
Q Consensus       250 ~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~  325 (496)
                      .++...+...++.+....+..  .....-.+...+...|++++|...|+......+.+..  .....+...+...|++++
T Consensus        24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~  103 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE  103 (145)
T ss_pred             CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            455555555555554432211  0112222334455555555555555555544322211  122334455555566666


Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHH
Q 010994          326 AEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED  367 (496)
Q Consensus       326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  367 (496)
                      |...++......  .....+....+.|.+.|+.++|...|+.
T Consensus       104 Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  104 ALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            665554432221  2223444555556666666666665554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.95  E-value=0.00027  Score=53.52  Aligned_cols=97  Identities=11%  Similarity=0.008  Sum_probs=48.4

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCC-CCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC----HHHHHHHH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGIC-VFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT----YQTYGALL  138 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~li  138 (496)
                      ++..+...+.+.|++++|.+.|+.+.+.... +..+.....+...+.+.|+++.|...|+.+....|+    ..++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            4555666666777777777777777664411 011222333344444555555555555544443332    23344444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 010994          139 NCYVRQRQTDKALSHFRKMKEM  160 (496)
Q Consensus       139 ~~~~~~g~~~~A~~~~~~m~~~  160 (496)
                      .++.+.|+.++|...++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            4445555555555555554443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.94  E-value=0.014  Score=52.78  Aligned_cols=87  Identities=13%  Similarity=0.097  Sum_probs=70.5

Q ss_pred             CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHH
Q 010994           57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGA  136 (496)
Q Consensus        57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  136 (496)
                      ..+.|..+|-.||..+..++..++..+++++|...  +|.-+......+..-....++...+.+|.+.....-+...|..
T Consensus        37 dNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p--fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~ldLW~l  114 (660)
T COG5107          37 DNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP--FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLNLDLWML  114 (660)
T ss_pred             cCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC--CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhccHhHHHH
Confidence            56778999999999999999999999999999875  4456666666666666678899999999998887777888887


Q ss_pred             HHHHHHhcC
Q 010994          137 LLNCYVRQR  145 (496)
Q Consensus       137 li~~~~~~g  145 (496)
                      .++.--+.+
T Consensus       115 Yl~YIRr~n  123 (660)
T COG5107         115 YLEYIRRVN  123 (660)
T ss_pred             HHHHHHhhC
Confidence            777655544

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.94  E-value=1.2e-05  Score=43.93  Aligned_cols=30  Identities=40%  Similarity=0.694  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 010994          133 TYGALLNCYVRQRQTDKALSHFRKMKEMGI  162 (496)
Q Consensus       133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  162 (496)
                      +|+.++++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            577777777777777777777777777653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.94  E-value=8e-05  Score=60.32  Aligned_cols=97  Identities=21%  Similarity=0.451  Sum_probs=65.1

Q ss_pred             HHHHHhchhcCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC----------
Q 010994          118 ESYFSNLKDDEKTYQTYGALLNCYVRQ-----RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY----------  182 (496)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~----------  182 (496)
                      ...|+.......|-.+|..+++.|.+.     |.++=....+..|.+-|+.-|..+|+.|++.+=+ |.+          
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fvp~n~fQ~~F  112 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFVPRNFFQAEF  112 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcccccHHHHHh
Confidence            345555555567888888899888755     6778888888999999999999999999998764 332          


Q ss_pred             -------CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994          183 -------EKVPDVLTEMKAKNIFPDNFSYRICINSYGARS  215 (496)
Q Consensus       183 -------~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~  215 (496)
                             +-|++++++|...|+.||..|+..+++.+++.+
T Consensus       113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence                   224444445554455555555554444444433

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.92  E-value=0.00025  Score=51.00  Aligned_cols=91  Identities=16%  Similarity=0.107  Sum_probs=45.9

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSK  426 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  426 (496)
                      .+...+...|++++|...++++.+.... +...+..+...+...|++++|.+.++.+..      -.+.+..++..+...
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~   77 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALE------LDPDNAKAYYNLGLA   77 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCCcchhHHHHHHHH
Confidence            3444455555555555555555543222 234455555555555555555555555554      112222344455555


Q ss_pred             HhccCCHHHHHHHHHHHH
Q 010994          427 LGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       427 ~~~~g~~~~a~~~~~~~~  444 (496)
                      +...|+++.|...+....
T Consensus        78 ~~~~~~~~~a~~~~~~~~   95 (100)
T cd00189          78 YYKLGKYEEALEAYEKAL   95 (100)
T ss_pred             HHHHHhHHHHHHHHHHHH
Confidence            555555555555555443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.92  E-value=0.00017  Score=66.25  Aligned_cols=119  Identities=18%  Similarity=0.179  Sum_probs=62.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH
Q 010994          130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEM--GIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC  207 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  207 (496)
                      +......+++.+....+++.+..++-+....  ....-..|.+++++.|.+.|..++++.++..=...|+-||..+++.+
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            3444445555555555555565555555433  12122333446666666666666666666665566666666666666


Q ss_pred             HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010994          208 INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK  249 (496)
Q Consensus       208 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  249 (496)
                      ++.+.+.|++..|.++...|. ..+...+..++..-+.+|.+
T Consensus       145 md~fl~~~~~~~A~~V~~~~~-lQe~~~~~~t~~L~l~~~~~  185 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMM-LQEEFDNPSTQALALYSCYK  185 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHH-HhhccCCchHHHHHHHHHHH
Confidence            666666666666666655555 23332444444444444433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.90  E-value=0.012  Score=50.63  Aligned_cols=180  Identities=13%  Similarity=0.018  Sum_probs=95.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcccCccc--hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh-
Q 010994          243 AAHFYIKANLIDKASDVLKKAEERLEQKDGI--GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK-  319 (496)
Q Consensus       243 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  319 (496)
                      ....+...|++++|.+.|+++....+.+...  ..-.++.++.+.+++++|...++......+......+...+.+.+. 
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            3444455566666666666665543322111  1123445556666666666666666555553333333333333221 


Q ss_pred             -c---------------CC---HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHH
Q 010994          320 -L---------------GE---HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW  380 (496)
Q Consensus       320 -~---------------~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  380 (496)
                       .               .+   ...|...|+.+.+.  -|+             ..-..+|...+..+.+.    =...-
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~-------------S~ya~~A~~rl~~l~~~----la~~e  178 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPN-------------SQYTTDATKRLVFLKDR----LAKYE  178 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcC-------------ChhHHHHHHHHHHHHHH----HHHHH
Confidence             0               11   22344445554444  222             22234444433333321    00111


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994          381 AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       381 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      -.+..-|.+.|.+..|+.-++.+++.+   .+.+........+..+|...|..++|..+...+.
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Y---p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDY---PDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            245566888888888988888888743   3334445667778888888899888888777654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.90  E-value=0.0015  Score=57.99  Aligned_cols=192  Identities=17%  Similarity=0.168  Sum_probs=108.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994          242 SAAHFYIKANLIDKASDVLKKAEERLEQK-----DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA  316 (496)
Q Consensus       242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  316 (496)
                      .....|-..|++++|.+.|.+..+.....     -...|.....+|.+. ++++|+..++.               .+..
T Consensus        40 ~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~---------------A~~~  103 (282)
T PF14938_consen   40 KAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEK---------------AIEI  103 (282)
T ss_dssp             HHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHH---------------HHHH
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHH---------------HHHH
Confidence            33455666777777777777653322111     112233333333332 55555555553               3456


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-CchhHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHHh
Q 010994          317 LMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN-GLVQNAEAILEDLVEK----GKATT--PNSWAVVAAGYFD  389 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~  389 (496)
                      |...|++..|-+.+..+               ...|-.. |+++.|.+.|++..+.    + .+.  ..++..+...+.+
T Consensus       104 y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~  167 (282)
T PF14938_consen  104 YREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYAR  167 (282)
T ss_dssp             HHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHH
Confidence            66777777776665544               3344555 7788888888776542    2 111  2356677788899


Q ss_pred             cCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCC---CC--HHHHHHHHHHHHh
Q 010994          390 AGKTERGFQCMKAALSVYVEGKGWKPDPK-VITSILSKLGDEGSVQDVEAFVAALRTVIP---MN--RQMYHAFIKANIR  463 (496)
Q Consensus       390 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~l~~~~~~  463 (496)
                      .|++++|+++|++...........+++.. .+-..+-++...||...|...++......|   .+  ......|+.+|-.
T Consensus       168 l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~  247 (282)
T PF14938_consen  168 LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEE  247 (282)
T ss_dssp             TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh
Confidence            99999999999998873222222233332 222333355567899999999998876432   22  3567777888877


Q ss_pred             CC
Q 010994          464 NG  465 (496)
Q Consensus       464 ~g  465 (496)
                      ..
T Consensus       248 ~D  249 (282)
T PF14938_consen  248 GD  249 (282)
T ss_dssp             T-
T ss_pred             CC
Confidence            66

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.86  E-value=0.00031  Score=64.56  Aligned_cols=122  Identities=12%  Similarity=0.139  Sum_probs=93.7

Q ss_pred             cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc--CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH
Q 010994          269 QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC--KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN  346 (496)
Q Consensus       269 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  346 (496)
                      +.+......+++.+....+.+.+..++-......  ...-..|..++++.|.+.|..+.+..+++.=...|+-||..++|
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            3556677777888777778888888777665542  22334566788888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA  390 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  390 (496)
                      .+++.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            88888888888888888888887776666777777666666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.85  E-value=0.0008  Score=61.79  Aligned_cols=87  Identities=7%  Similarity=-0.033  Sum_probs=39.1

Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH
Q 010994          317 LMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERG  396 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a  396 (496)
                      +...|+++.|...|.++.+... .+...|..+..+|...|++++|+..++++++.+.. +...|..+..+|...|++++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence            3344445555555444444321 13333444444444444444444444444443322 333444444444444444444


Q ss_pred             HHHHHHHHH
Q 010994          397 FQCMKAALS  405 (496)
Q Consensus       397 ~~~~~~~~~  405 (496)
                      +..|++++.
T Consensus        90 ~~~~~~al~   98 (356)
T PLN03088         90 KAALEKGAS   98 (356)
T ss_pred             HHHHHHHHH
Confidence            444444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.85  E-value=0.00053  Score=58.38  Aligned_cols=104  Identities=20%  Similarity=0.172  Sum_probs=87.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994          315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE  394 (496)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  394 (496)
                      .-+.+.+++.+|...|.+.++.. +-|.+.|..-..+|++.|.++.|++-.+..+..+.. -..+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence            35677899999999999999874 337777888889999999999999999998886544 4568999999999999999


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994          395 RGFQCMKAALSVYVEGKGWKPDPKVITSILSKL  427 (496)
Q Consensus       395 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~  427 (496)
                      +|++.|+++++       +.|+..+|-.=+...
T Consensus       167 ~A~~aykKaLe-------ldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  167 EAIEAYKKALE-------LDPDNESYKSNLKIA  192 (304)
T ss_pred             HHHHHHHhhhc-------cCCCcHHHHHHHHHH
Confidence            99999999986       889988777655543

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.82  E-value=0.00027  Score=50.58  Aligned_cols=77  Identities=8%  Similarity=0.152  Sum_probs=46.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcC--------chhHHHHHHHHHHhcCCCCCHhHHHHH
Q 010994          313 MLEALMKLGEHEEAEKVLKEWELSGN-SYDTRIPNAVIIGYCNNG--------LVQNAEAILEDLVEKGKATTPNSWAVV  383 (496)
Q Consensus       313 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l  383 (496)
                      .|..|...+++.....+|+.+++.|+ -|+..+|+.++.+.++..        ++-..+.+|+.|+..+++|+..+|+.+
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            34444555666666777777776666 666677776666655432        233445566666666666666666666


Q ss_pred             HHHHHh
Q 010994          384 AAGYFD  389 (496)
Q Consensus       384 ~~~~~~  389 (496)
                      +..+.+
T Consensus       111 l~~Llk  116 (120)
T PF08579_consen  111 LGSLLK  116 (120)
T ss_pred             HHHHHH
Confidence            655543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.81  E-value=0.00037  Score=61.58  Aligned_cols=136  Identities=15%  Similarity=0.167  Sum_probs=99.6

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 010994          308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG-YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG  386 (496)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  386 (496)
                      .+|..++....+.+..+.|..+|.+..+.+ ..+..+|...... |...++.+.|.++|+...+. ...+...|...+..
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            357788888888888999999999998543 2344455444444 33356777799999998876 33477888999999


Q ss_pred             HHhcCChHHHHHHHHHHHHhhhcCCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994          387 YFDAGKTERGFQCMKAALSVYVEGKGWKPDP---KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR  451 (496)
Q Consensus       387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  451 (496)
                      +...|+.+.|..+|++++.      .+.++.   ..|...+..=.+.|+++.+.++.+++.+..+.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~------~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~  141 (280)
T PF05843_consen   80 LIKLNDINNARALFERAIS------SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN  141 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCC------TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred             HHHhCcHHHHHHHHHHHHH------hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence            9999999999999999986      343333   4888888888888999999999988888665533

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.77  E-value=0.00059  Score=62.64  Aligned_cols=92  Identities=14%  Similarity=-0.087  Sum_probs=54.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCch
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLV  358 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  358 (496)
                      ...+...|++++|+..|+......+ .+...|..+..+|.+.|++++|...++.+.+... .+...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P-~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDP-NNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence            3445556666666666666655544 4445555666666666666666666666665432 2344555556666666666


Q ss_pred             hHHHHHHHHHHhcC
Q 010994          359 QNAEAILEDLVEKG  372 (496)
Q Consensus       359 ~~a~~~~~~~~~~~  372 (496)
                      ++|...|++..+.+
T Consensus        87 ~eA~~~~~~al~l~  100 (356)
T PLN03088         87 QTAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHHhC
Confidence            66666666666543

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.77  E-value=4.3e-05  Score=41.67  Aligned_cols=29  Identities=31%  Similarity=0.704  Sum_probs=15.4

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKG  372 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (496)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.75  E-value=0.027  Score=53.89  Aligned_cols=180  Identities=8%  Similarity=0.030  Sum_probs=91.2

Q ss_pred             CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCC----Cc--chhhhhhhHHHhhcCHHHHHHHHHhchhcCCC
Q 010994           57 GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVF----AP--CDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT  130 (496)
Q Consensus        57 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  130 (496)
                      ...|.+..|..|...-...-.++.|...|-....-....+    ..  ..-....+.-+-.|++++|++.+-.+.+.+  
T Consensus       687 EdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD--  764 (1189)
T KOG2041|consen  687 EDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD--  764 (1189)
T ss_pred             hcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh--
Confidence            3557777787777776666666666665554433211000    00  000112344455688888888886665432  


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHH
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS----TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRI  206 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  206 (496)
                           ..|..+.+.|++-...++++.   -|-..|    ...|+.+...++....|++|.+.|..-..         -..
T Consensus       765 -----LAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~  827 (1189)
T KOG2041|consen  765 -----LAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TEN  827 (1189)
T ss_pred             -----hhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHh
Confidence                 344556666766665555432   111111    23566666666666666666666654321         112


Q ss_pred             HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010994          207 CINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLK  261 (496)
Q Consensus       207 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  261 (496)
                      .+.++.+..++++-+.+.+.+.      .+....-.+..++.+.|.-++|.+.|-
T Consensus       828 ~~ecly~le~f~~LE~la~~Lp------e~s~llp~~a~mf~svGMC~qAV~a~L  876 (1189)
T KOG2041|consen  828 QIECLYRLELFGELEVLARTLP------EDSELLPVMADMFTSVGMCDQAVEAYL  876 (1189)
T ss_pred             HHHHHHHHHhhhhHHHHHHhcC------cccchHHHHHHHHHhhchHHHHHHHHH
Confidence            4444555555555444444443      122223334455555555555554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.75  E-value=0.00014  Score=51.06  Aligned_cols=79  Identities=22%  Similarity=0.117  Sum_probs=35.4

Q ss_pred             CChHHHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994          251 NLIDKASDVLKKAEERLEQ-KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV  329 (496)
Q Consensus       251 ~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  329 (496)
                      |+++.|+.+++++.+..+. ++...+..+..+|.+.|++++|+.+++. ....+ .+......+..++.+.|++++|..+
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4555555555555544331 1333333455555555555555555554 22111 1222222335555555555555555


Q ss_pred             HH
Q 010994          330 LK  331 (496)
Q Consensus       330 ~~  331 (496)
                      ++
T Consensus        81 l~   82 (84)
T PF12895_consen   81 LE   82 (84)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.74  E-value=0.00045  Score=58.79  Aligned_cols=99  Identities=15%  Similarity=0.038  Sum_probs=79.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchh
Q 010994          280 SLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ  359 (496)
Q Consensus       280 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  359 (496)
                      .-..+.+++.+|+..|...+...+ .+..-|..-..+|++.|.++.|.+-.+....... .-...|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccCcHH
Confidence            346778999999999998888766 6677788889999999999999998888877632 23568899999999999999


Q ss_pred             HHHHHHHHHHhcCCCCCHhHHHH
Q 010994          360 NAEAILEDLVEKGKATTPNSWAV  382 (496)
Q Consensus       360 ~a~~~~~~~~~~~~~p~~~~~~~  382 (496)
                      +|.+.|++.++..  |+-.+|-.
T Consensus       167 ~A~~aykKaLeld--P~Ne~~K~  187 (304)
T KOG0553|consen  167 EAIEAYKKALELD--PDNESYKS  187 (304)
T ss_pred             HHHHHHHhhhccC--CCcHHHHH
Confidence            9999999998854  55555543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.74  E-value=0.0012  Score=58.31  Aligned_cols=145  Identities=11%  Similarity=0.054  Sum_probs=108.5

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh-cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994          273 IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK-LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG  351 (496)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (496)
                      .+|..++...-+.+..+.|..+|...... .......|......-.. .++.+.|..+|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~-~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD-KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            46888999999999999999999988743 32445556655555333 57777799999999987 45578889999999


Q ss_pred             HHhcCchhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994          352 YCNNGLVQNAEAILEDLVEKGKATTP---NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL  427 (496)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~  427 (496)
                      +.+.++.+.|..+|++.... +.++.   ..|...+.--.+.|+.+.+..+.+++.+       .-|+...+..++.-|
T Consensus        80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~-------~~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE-------LFPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH-------HTTTS-HHHHHHCCT
T ss_pred             HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HhhhhhHHHHHHHHh
Confidence            99999999999999999876 33232   4899999999999999999999999987       345544444454444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.00057  Score=49.09  Aligned_cols=21  Identities=29%  Similarity=0.249  Sum_probs=8.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHH
Q 010994          243 AAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       243 li~~~~~~~~~~~a~~~~~~m  263 (496)
                      +..++...+++++|.+.++..
T Consensus        40 ~~~~~~~~~~~~~a~~~~~~~   60 (100)
T cd00189          40 LAAAYYKLGKYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.71  E-value=7.5e-05  Score=52.40  Aligned_cols=80  Identities=16%  Similarity=0.221  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994          321 GEHEEAEKVLKEWELSGNS-YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC  399 (496)
Q Consensus       321 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  399 (496)
                      |+++.|..+++++.+.... ++...+..+..+|.+.|++++|..++++ .+.+.. +....-.+..+|.+.|++++|++.
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4555566666655554321 1223333355556666666666666655 222111 223333445555666666666665


Q ss_pred             HHH
Q 010994          400 MKA  402 (496)
Q Consensus       400 ~~~  402 (496)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            554

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.70  E-value=0.0023  Score=52.19  Aligned_cols=60  Identities=12%  Similarity=0.090  Sum_probs=28.1

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..+...+...|++++|...|++..+.+..++  ...+..+...+.+.|++++|...+.+++.
T Consensus        39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  100 (172)
T PRK02603         39 YRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE  100 (172)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3344444444555555555554443322211  23444555555555555555555555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=0.029  Score=50.29  Aligned_cols=89  Identities=11%  Similarity=0.014  Sum_probs=63.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcC---CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994          316 ALMKLGEHEEAEKVLKEWELSG---NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK  392 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~  392 (496)
                      -..+.|.+..|.+.+.+.+...   ..|+...|........+.|+..+|+.-.+...+.+.. -...|..-..++...++
T Consensus       258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~  336 (486)
T KOG0550|consen  258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEK  336 (486)
T ss_pred             hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHH
Confidence            4567899999999999988653   2345555666666777889999999998888875311 11233333455667788


Q ss_pred             hHHHHHHHHHHHH
Q 010994          393 TERGFQCMKAALS  405 (496)
Q Consensus       393 ~~~a~~~~~~~~~  405 (496)
                      |++|.+-|+++.+
T Consensus       337 ~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998887

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.67  E-value=0.0019  Score=50.09  Aligned_cols=91  Identities=10%  Similarity=-0.137  Sum_probs=47.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC
Q 010994          243 AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE  322 (496)
Q Consensus       243 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  322 (496)
                      +...+...|++++|.++|+.+....+ .+..-|-.|.-++-..|++++|+..|.......+ .++..+-.+..++...|+
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYDA-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence            44444555555555555555544322 3444455555555555555555555554444443 444555555555555555


Q ss_pred             HHHHHHHHHHHHh
Q 010994          323 HEEAEKVLKEWEL  335 (496)
Q Consensus       323 ~~~a~~~~~~~~~  335 (496)
                      .+.|.+.|+....
T Consensus       119 ~~~A~~aF~~Ai~  131 (157)
T PRK15363        119 VCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555444

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.66  E-value=0.044  Score=49.87  Aligned_cols=138  Identities=15%  Similarity=0.144  Sum_probs=83.3

Q ss_pred             HHhccChhHHHHHHHHHHhCCCCCCCcchhh------hhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHH--HHHh
Q 010994           72 LRKRKRFSQALEVSDWMNRKGICVFAPCDHA------VQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLN--CYVR  143 (496)
Q Consensus        72 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~--~~~~  143 (496)
                      +-+.+++.+|.++|..+-+...  .+|..+.      .++.++ -.++.+.-...+....+..|. ..|-.+..  .+.+
T Consensus        16 Lqkq~~~~esEkifskI~~e~~--~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~~~-s~~l~LF~~L~~Y~   91 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEKE--SSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQFGK-SAYLPLFKALVAYK   91 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhh--cchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHH
Confidence            4567888999999888877541  2222222      122222 235566666666666665553 22333332  2456


Q ss_pred             cCCHHHHHHHHHHHHHC--CCCC------------ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCC----CCChhhHH
Q 010994          144 QRQTDKALSHFRKMKEM--GIAL------------STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNI----FPDNFSYR  205 (496)
Q Consensus       144 ~g~~~~A~~~~~~m~~~--g~~p------------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~  205 (496)
                      .+++.+|++.+..-.++  +..|            |...=+..+.++.+.|.+.++..+++++...=.    .-+..+|+
T Consensus        92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd  171 (549)
T PF07079_consen   92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD  171 (549)
T ss_pred             hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence            78888888887766554  2221            112225667788889999999998888876533    25777787


Q ss_pred             HHHHHHhh
Q 010994          206 ICINSYGA  213 (496)
Q Consensus       206 ~li~~~~~  213 (496)
                      .++-.+++
T Consensus       172 ~~vlmlsr  179 (549)
T PF07079_consen  172 RAVLMLSR  179 (549)
T ss_pred             HHHHHHhH
Confidence            76655554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.66  E-value=0.0013  Score=50.99  Aligned_cols=94  Identities=11%  Similarity=-0.005  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994          310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD  389 (496)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  389 (496)
                      .-.+..-+...|++++|..+|+.+....+. +..-|-.|..++-..|++++|+..|......++. |+..+-.+..++..
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~  115 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHH
Confidence            334455566778888888888887766422 4555667777777788888888888888777654 77778888888888


Q ss_pred             cCChHHHHHHHHHHHH
Q 010994          390 AGKTERGFQCMKAALS  405 (496)
Q Consensus       390 ~~~~~~a~~~~~~~~~  405 (496)
                      .|+.+.|.+.|+.++.
T Consensus       116 lG~~~~A~~aF~~Ai~  131 (157)
T PRK15363        116 CDNVCYAIKALKAVVR  131 (157)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            8888888888888776

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.63  E-value=0.0082  Score=50.20  Aligned_cols=129  Identities=9%  Similarity=0.045  Sum_probs=69.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH-----
Q 010994          276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII-----  350 (496)
Q Consensus       276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-----  350 (496)
                      +.++.++.-.|.+.-....+.+.....+..++.....+++.-.+.||.+.|...|+...+..-..|....+.++.     
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            444444445555555555666555555445555555666666666666666666665554433333333333322     


Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+..+|++.++.|..
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQ  314 (366)
T ss_pred             heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            233445566666666666655444 444445444444555666666666666654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.63  E-value=0.0018  Score=52.56  Aligned_cols=62  Identities=10%  Similarity=-0.082  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhcccC--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010994          240 YASAAHFYIKANLIDKASDVLKKAEERLEQK--DGIGYNFLISLYASLGNKSEVLRLWDLEKTA  301 (496)
Q Consensus       240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  301 (496)
                      |..+...+...|++++|...|++.......+  ...+|..+...+...|++++|+..++.....
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~  101 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER  101 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3444444555555555555555544332111  1124555555555555555555555544443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=0.036  Score=49.73  Aligned_cols=275  Identities=11%  Similarity=-0.042  Sum_probs=151.3

Q ss_pred             HHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCC
Q 010994           68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQ  146 (496)
Q Consensus        68 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~  146 (496)
                      .-..+.+..++..|+..+...++..+  -+...+...+..+...+++++|..-.++-.+.+| ........-.++...++
T Consensus        55 ~gn~~yk~k~Y~nal~~yt~Ai~~~p--d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   55 EGNAFYKQKTYGNALKNYTFAIDMCP--DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSD  132 (486)
T ss_pred             hcchHHHHhhHHHHHHHHHHHHHhCc--cchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHH
Confidence            33445667777888888888877652  2333344445556666777776665554444433 23333334444444444


Q ss_pred             HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCChhhHHHHH-HHHhhcCChHHHHHHH
Q 010994          147 TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN-IFPDNFSYRICI-NSYGARSDLEGMEIIL  224 (496)
Q Consensus       147 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li-~~~~~~~~~~~a~~~~  224 (496)
                      ..+|.+.++         |...|           ....++..++...... -+|...+|..+- .++.-.|+.++|.+.-
T Consensus       133 ~i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea  192 (486)
T KOG0550|consen  133 LIEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEA  192 (486)
T ss_pred             HHHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHH
Confidence            444444443         11111           0111222222222211 123334444332 3555677777777765


Q ss_pred             HHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccc-------------hHHHHHHHHHhcCCHHHH
Q 010994          225 REMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGI-------------GYNFLISLYASLGNKSEV  291 (496)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------------~~~~l~~~~~~~~~~~~a  291 (496)
                      -... +.+. .+......-..++.-.++.+.|...|++....++  +..             .|..-..-..+.|++..|
T Consensus       193 ~~il-kld~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp--dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A  268 (486)
T KOG0550|consen  193 IDIL-KLDA-TNAEALYVRGLCLYYNDNADKAINHFQQALRLDP--DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA  268 (486)
T ss_pred             HHHH-hccc-chhHHHHhcccccccccchHHHHHHHhhhhccCh--hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence            5444 3322 2222222222344456777777777777554432  221             122223445789999999


Q ss_pred             HHHHHHHHhhcC---CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc-cHHHH--HHHHHhcCchhHHHHHH
Q 010994          292 LRLWDLEKTACK---RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR-IPNAV--IIGYCNNGLVQNAEAIL  365 (496)
Q Consensus       292 ~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~~a~~~~  365 (496)
                      .+.|.+.+...+   .++...|.....+..+.|+..+|..--+...+.    |.. +...+  ..++.-.+++++|.+-|
T Consensus       269 ~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~  344 (486)
T KOG0550|consen  269 YECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDY  344 (486)
T ss_pred             HHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998887665   445566777778888999999999988888765    221 11222  22334457788888888


Q ss_pred             HHHHhcC
Q 010994          366 EDLVEKG  372 (496)
Q Consensus       366 ~~~~~~~  372 (496)
                      +...+..
T Consensus       345 ~~a~q~~  351 (486)
T KOG0550|consen  345 EKAMQLE  351 (486)
T ss_pred             HHHHhhc
Confidence            8877653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.63  E-value=0.004  Score=50.70  Aligned_cols=86  Identities=15%  Similarity=0.062  Sum_probs=44.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKD--GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA  316 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  316 (496)
                      .+..+...+...|++++|...|++..+....++  ...+..+..++.+.|++++|...++......+ .+...+..+..+
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~  115 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHH
Confidence            344455555556666666666665544332221  23455555666666666666666665555433 233444445555


Q ss_pred             HHhcCCHHH
Q 010994          317 LMKLGEHEE  325 (496)
Q Consensus       317 ~~~~~~~~~  325 (496)
                      +...|+...
T Consensus       116 ~~~~g~~~~  124 (172)
T PRK02603        116 YHKRGEKAE  124 (172)
T ss_pred             HHHcCChHh
Confidence            555554433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.61  E-value=0.0036  Score=60.19  Aligned_cols=134  Identities=10%  Similarity=0.018  Sum_probs=64.8

Q ss_pred             cCccchHHHHHHHHHhc--C---CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC--------CHHHHHHHHHHHHh
Q 010994          269 QKDGIGYNFLISLYASL--G---NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLG--------EHEEAEKVLKEWEL  335 (496)
Q Consensus       269 ~~~~~~~~~l~~~~~~~--~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~  335 (496)
                      +.+...|...+++....  +   +...|..+|++.....+ .....+..+..++....        +...+.+.......
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP-~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP-DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            34555666666554322  1   24566666666665544 22333333322221110        11222222222222


Q ss_pred             c-CCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          336 S-GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       336 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      . ....+...|.++.......|++++|...+++..+.+  |+...|..+...+...|+.++|.+.++++..
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            1 112233445555444445566666666666666654  3555666666666666666666666666654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.61  E-value=0.019  Score=51.11  Aligned_cols=160  Identities=16%  Similarity=0.150  Sum_probs=85.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhc----CCC-CCcccHHHH
Q 010994          275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKL-GEHEEAEKVLKEWELS----GNS-YDTRIPNAV  348 (496)
Q Consensus       275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l  348 (496)
                      |...+..|...|++..|-+.+..+               ...|... |+++.|.+.|++..+.    +.. .-...+..+
T Consensus        97 ~~~A~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~  161 (282)
T PF14938_consen   97 YEKAIEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA  161 (282)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence            334445666777777766666533               3344444 6677777777666532    100 012344566


Q ss_pred             HHHHHhcCchhHHHHHHHHHHhcCCC-----CCHh-HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC--HHHH
Q 010994          349 IIGYCNNGLVQNAEAILEDLVEKGKA-----TTPN-SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD--PKVI  420 (496)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~  420 (496)
                      ...+.+.|++++|.++|++.......     .+.. .|-..+-++...|+...|...+++....   ..++..+  ....
T Consensus       162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~---~~~F~~s~E~~~~  238 (282)
T PF14938_consen  162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ---DPSFASSREYKFL  238 (282)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT---STTSTTSHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCcHHHHHH
Confidence            77788888999999999887764322     1121 2334455667788999999999887651   1233333  2456


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994          421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM  453 (496)
Q Consensus       421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  453 (496)
                      ..|+.++- .|+.+..........+..+.|...
T Consensus       239 ~~l~~A~~-~~D~e~f~~av~~~d~~~~ld~w~  270 (282)
T PF14938_consen  239 EDLLEAYE-EGDVEAFTEAVAEYDSISRLDNWK  270 (282)
T ss_dssp             HHHHHHHH-TT-CCCHHHHCHHHTTSS---HHH
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHcccCccHHHH
Confidence            66777664 345444444444444433445443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.58  E-value=0.014  Score=48.87  Aligned_cols=61  Identities=13%  Similarity=0.093  Sum_probs=32.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcccC--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 010994          243 AAHFYIKANLIDKASDVLKKAEERLEQK--DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK  303 (496)
Q Consensus       243 li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  303 (496)
                      ....+...|++++|...|+.+....+..  -....-.++.++.+.|+++.|...++......+
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP   73 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYP   73 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            4445556666666666666666543211  113344455666666666666666666665555

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.54  E-value=0.00053  Score=45.24  Aligned_cols=56  Identities=16%  Similarity=0.347  Sum_probs=33.4

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          349 IIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ...+.+.|++++|...|+++++..+. +...+..+...+...|++++|...|+++++
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34455666666666666666665533 555666666666666666666666666654

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.53  E-value=0.0021  Score=52.18  Aligned_cols=23  Identities=0%  Similarity=-0.373  Sum_probs=9.0

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHh
Q 010994          205 RICINSYGARSDLEGMEIILREM  227 (496)
Q Consensus       205 ~~li~~~~~~~~~~~a~~~~~~~  227 (496)
                      ..+..++...|++++|+..++..
T Consensus        76 ~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         76 YNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH
Confidence            33333333344444444444333

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.51  E-value=0.00034  Score=46.74  Aligned_cols=51  Identities=16%  Similarity=0.221  Sum_probs=28.1

Q ss_pred             hhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010994          110 RVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEM  160 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  160 (496)
                      +.|++++|+..|+.+....| +..++..+..+|.+.|++++|..+++.+...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34455555555555555444 4555555666666666666666666665554

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.48  E-value=0.033  Score=44.12  Aligned_cols=134  Identities=19%  Similarity=0.189  Sum_probs=79.9

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CCHhHHHHH
Q 010994          305 YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TTPNSWAVV  383 (496)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l  383 (496)
                      |....-..+..++...|+..+|...|++...--+..|....-.+..+....+++..|...++.+-+.++. -.+.+.-.+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            4445555566666677777777777766655434445555556666666667777777777666654311 012233455


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      ...+...|+..+|...|+.++.       .-|+..........+.++|+.++|..-+..+.+
T Consensus       167 aR~laa~g~~a~Aesafe~a~~-------~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAIS-------YYPGPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHH-------hCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            6667777777777777777765       556665555555556666766665554444433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.47  E-value=0.00057  Score=45.60  Aligned_cols=51  Identities=18%  Similarity=0.351  Sum_probs=25.2

Q ss_pred             hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..|++++|..+|+++.+..+. +...+..+..+|.+.|++++|.++++++..
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345555555555555544333 444444555555555555555555555543

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.46  E-value=0.031  Score=48.20  Aligned_cols=56  Identities=18%  Similarity=0.100  Sum_probs=27.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994          278 LISLYASLGNKSEVLRLWDLEKTACKR--YINRDYITMLEALMKLGEHEEAEKVLKEW  333 (496)
Q Consensus       278 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  333 (496)
                      +...|.+.|.+..|..-++.+...-+.  ........++.+|...|..++|..+...+
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l  238 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII  238 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            344455555555555555555554431  11233444555555555555555544433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.45  E-value=0.00051  Score=45.99  Aligned_cols=63  Identities=16%  Similarity=0.190  Sum_probs=41.9

Q ss_pred             cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHH
Q 010994          342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-KTERGFQCMKAALS  405 (496)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~  405 (496)
                      ..+|..+...+...|++++|+..|.+.++.++. +...|..+..+|...| ++++|++.++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            345566666667777777777777777766544 5566666777777776 57777777776665

...

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.44  E-value=0.078  Score=47.31  Aligned_cols=249  Identities=15%  Similarity=0.065  Sum_probs=125.4

Q ss_pred             hhcCHHHHHHHHHhchhcCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHH
Q 010994          110 RVHGFLSAESYFSNLKDDEKTYQ--TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPD  187 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~  187 (496)
                      -.|+++.|.+-|+.|... |...  -...|.-.--+.|+.+.|..+-++.-..-. --...+...+...+..|+|+.|++
T Consensus       132 ~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~Alk  209 (531)
T COG3898         132 LEGDYEDARKKFEAMLDD-PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALK  209 (531)
T ss_pred             hcCchHHHHHHHHHHhcC-hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHH
Confidence            456666666666666652 2211  122233333455666666666665544421 134455666666666666666666


Q ss_pred             HHHHHHHCC-CCCChhh--HHHHHHHHh---hcCChHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010994          188 VLTEMKAKN-IFPDNFS--YRICINSYG---ARSDLEGMEIILREME-SQPHIVLDWSTYASAAHFYIKANLIDKASDVL  260 (496)
Q Consensus       188 ~~~~m~~~~-~~p~~~~--~~~li~~~~---~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  260 (496)
                      +.+.-+... +.++..-  -..|+.+-.   -..+...|...-.+.. -..++.|-...   -...+.+.|+..++-.++
T Consensus       210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~---AAralf~d~~~rKg~~il  286 (531)
T COG3898         210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVV---AARALFRDGNLRKGSKIL  286 (531)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHH---HHHHHHhccchhhhhhHH
Confidence            666555432 3333221  112222111   1123333433332222 12333333322   446677777777777777


Q ss_pred             HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhh--cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010994          261 KKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTA--CKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN  338 (496)
Q Consensus       261 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  338 (496)
                      +.+.+..+.|+..    .+..+.+.|+  .++.-++.....  -...+..+...+..+....|++..|..--+.....  
T Consensus       287 E~aWK~ePHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--  358 (531)
T COG3898         287 ETAWKAEPHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--  358 (531)
T ss_pred             HHHHhcCCChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--
Confidence            7776665545432    1122233443  233323222111  11233455566666777777777776666555543  


Q ss_pred             CCCcccHHHHHHHHHh-cCchhHHHHHHHHHHhc
Q 010994          339 SYDTRIPNAVIIGYCN-NGLVQNAEAILEDLVEK  371 (496)
Q Consensus       339 ~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~  371 (496)
                      .|....|..|.+.-.- .|+-.++..++.+....
T Consensus       359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            5666666666655443 37777777777776654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0088  Score=51.45  Aligned_cols=104  Identities=13%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHhhhcCCCCCCC
Q 010994          340 YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG---KTERGFQCMKAALSVYVEGKGWKPD  416 (496)
Q Consensus       340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p~  416 (496)
                      -|...|-.|...|...|+++.|..-|.+..+.... |...+..+..++..+.   ...++..++++++.      .-+-|
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~------~D~~~  226 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALA------LDPAN  226 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh------cCCcc
Confidence            36666777777777777777777777766665332 4555555554444322   23456667777665      22334


Q ss_pred             HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994          417 PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN  450 (496)
Q Consensus       417 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  450 (496)
                      ......|...+...|++.+|...|+.|.+..|++
T Consensus       227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            4555555566666777777777777666655444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.38  E-value=0.0021  Score=57.16  Aligned_cols=135  Identities=14%  Similarity=0.066  Sum_probs=75.2

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHH----hcCCC-CCcccHHHHHHHHHhcCchhHHHHHHHHHH----hcCC-CCCH
Q 010994          308 RDYITMLEALMKLGEHEEAEKVLKEWE----LSGNS-YDTRIPNAVIIGYCNNGLVQNAEAILEDLV----EKGK-ATTP  377 (496)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~-~p~~  377 (496)
                      ..|..+...|.-.|+++.|....+.-.    +-|-. .....+..+..++.-.|+++.|.+.|+.-.    +.|- ....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            445556666666677777766554322    11211 122345556666666777777777666533    2221 1233


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994          378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAA  442 (496)
Q Consensus       378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  442 (496)
                      .+.-+|...|.-..++++|+.++.+-+....+-....-....+.+|..++...|..++|..+.+.
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~  340 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAEL  340 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            45556667777777777777777665441100011222345667777777777777777766653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.37  E-value=0.054  Score=51.95  Aligned_cols=203  Identities=9%  Similarity=0.034  Sum_probs=123.2

Q ss_pred             CCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC-CCCC--------ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC
Q 010994          163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK-NIFP--------DNFSYRICINSYGARSDLEGMEIILREMESQPHI  233 (496)
Q Consensus       163 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p--------~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  233 (496)
                      .|.+..|..+.......-.++-|...|-+.... |++.        +...-.+=+.+  -.|.+++|++++-++. .++.
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~d-rrDL  765 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDAD-RRDL  765 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccc-hhhh
Confidence            355666666666555555555555555444322 2211        00111111222  2478899999888886 4443


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc----cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchh
Q 010994          234 VLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD----GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD  309 (496)
Q Consensus       234 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  309 (496)
                               .|..+.+.|+|-...++++.   .|...|    ..+|+.+...+.....|++|.+.|..-..         
T Consensus       766 ---------Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------  824 (1189)
T KOG2041|consen  766 ---------AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------  824 (1189)
T ss_pred             ---------hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------
Confidence                     66778888888777766654   111111    25788889999998899999998874321         


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994          310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD  389 (496)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  389 (496)
                      ....+.++.+..++++-+.+...+     +-+....-.+.+++.+.|.-++|.+.|-+-..    |     ..-+..|..
T Consensus       825 ~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~  890 (1189)
T KOG2041|consen  825 TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVE  890 (1189)
T ss_pred             hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHH
Confidence            123566777777776666555444     33555667788888888888888876643322    1     234566777


Q ss_pred             cCChHHHHHHHHHH
Q 010994          390 AGKTERGFQCMKAA  403 (496)
Q Consensus       390 ~~~~~~a~~~~~~~  403 (496)
                      .++|.+|.++-++.
T Consensus       891 LnQW~~avelaq~~  904 (1189)
T KOG2041|consen  891 LNQWGEAVELAQRF  904 (1189)
T ss_pred             HHHHHHHHHHHHhc
Confidence            77777777766653

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.37  E-value=0.0025  Score=56.73  Aligned_cols=134  Identities=12%  Similarity=-0.048  Sum_probs=91.8

Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHH----HhcCCC-CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDL----VEKGKA-TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP  417 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~  417 (496)
                      ..|..|...|--.|+++.|+...+.-    .+.|-+ .....+..+..++.-.|+++.|.+.|+..+...++-..-....
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            45666677777788999988765432    233311 1234678899999999999999999998776332222233345


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994          418 KVITSILSKLGDEGSVQDVEAFVAALRT------VIPMNRQMYHAFIKANIRNG--KGVDELLDSMK  476 (496)
Q Consensus       418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~  476 (496)
                      .+..+|.+.|.-..+++.|+.++.+-..      ...-....+.+|..+|...|  +.|+.+.+.-+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            6777888888888899999998873221      12234567888999999988  67776655544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.37  E-value=0.015  Score=45.79  Aligned_cols=77  Identities=10%  Similarity=0.151  Sum_probs=54.1

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT  421 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~  421 (496)
                      ....++..+...|+++.|..+.+.+....+- |...|..++.+|...|+...|.+.|+++.....+..|+.|+..+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            3455667777888888888888888887655 7778888888888888888888888888776666678888876543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.36  E-value=0.026  Score=44.75  Aligned_cols=95  Identities=9%  Similarity=-0.076  Sum_probs=38.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCCchhHHHHHHHHHh
Q 010994          241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-RYINRDYITMLEALMK  319 (496)
Q Consensus       241 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~  319 (496)
                      ..|...+.+.|+..+|...|.+.......-|....-.+.++....+++..|...++...+..+ .-++.+...+.+.+..
T Consensus        93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa  172 (251)
T COG4700          93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAA  172 (251)
T ss_pred             HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHh
Confidence            334444444444444444444444322223333333444444444444444444443333322 1111223333444444


Q ss_pred             cCCHHHHHHHHHHHHh
Q 010994          320 LGEHEEAEKVLKEWEL  335 (496)
Q Consensus       320 ~~~~~~a~~~~~~~~~  335 (496)
                      .|+...|+..|+....
T Consensus       173 ~g~~a~Aesafe~a~~  188 (251)
T COG4700         173 QGKYADAESAFEVAIS  188 (251)
T ss_pred             cCCchhHHHHHHHHHH
Confidence            4444444444444443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.35  E-value=0.0097  Score=56.23  Aligned_cols=214  Identities=13%  Similarity=0.141  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHH---------HHHHHHCCCCCChhHHHHHHHHHHhcCCCC--cHHHHHHHHHHCCCCCCh
Q 010994          133 TYGALLNCYVRQRQTDKALSH---------FRKMKEMGIALSTLTYNDIMCLYSKTGQYE--KVPDVLTEMKAKNIFPDN  201 (496)
Q Consensus       133 ~~~~li~~~~~~g~~~~A~~~---------~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~~~~p~~  201 (496)
                      .+.+=+-.|...|.+++|..+         |+.+...  ..+...++..=.+|.+..+..  +...-+++++++|-.|+.
T Consensus       558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~  635 (1081)
T KOG1538|consen  558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPND  635 (1081)
T ss_pred             cccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchH
Confidence            344444556666666666543         1111111  012223344444555444332  333345677777877876


Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH---------H-HhcccCc
Q 010994          202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA---------E-ERLEQKD  271 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m---------~-~~~~~~~  271 (496)
                      ..   +...++-.|++.+|-++|.+-- ..+         ..+..|.....+|.|.+++..-         . ......+
T Consensus       636 iL---lA~~~Ay~gKF~EAAklFk~~G-~en---------RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~  702 (1081)
T KOG1538|consen  636 LL---LADVFAYQGKFHEAAKLFKRSG-HEN---------RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARN  702 (1081)
T ss_pred             HH---HHHHHHhhhhHHHHHHHHHHcC-chh---------hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhh
Confidence            53   4455667788888888887654 211         1333444444444444443220         0 0000111


Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHH------HHHhhc---CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994          272 GIGYNFLISLYASLGNKSEVLRLWD------LEKTAC---KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT  342 (496)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  342 (496)
                      ..--.+....+...|+.++|..+.-      .+...+   ...+..+...+...+.+...+..|.++|..|-+.      
T Consensus       703 ~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~------  776 (1081)
T KOG1538|consen  703 IKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL------  776 (1081)
T ss_pred             cCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH------
Confidence            1111233444555666666655432      111111   1223344444444455566677777777766432      


Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVE  370 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (496)
                         ..+++.....+++++|..+-++..+
T Consensus       777 ---ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  777 ---KSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             ---HHHhhheeecccchHhHhhhhhCcc
Confidence               3566677777788887777666554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.35  E-value=0.0038  Score=49.25  Aligned_cols=120  Identities=12%  Similarity=0.065  Sum_probs=65.5

Q ss_pred             HHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHH
Q 010994           71 DLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKA  150 (496)
Q Consensus        71 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  150 (496)
                      .....++.+.+.+.++.+...-..++-+....        ..-.......+....     ..+...++..+...|++++|
T Consensus        15 ~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~--------~~W~~~~r~~l~~~~-----~~~~~~l~~~~~~~~~~~~a   81 (146)
T PF03704_consen   15 AAARAGDPEEAIELLEEALALYRGDFLPDLDD--------EEWVEPERERLRELY-----LDALERLAEALLEAGDYEEA   81 (146)
T ss_dssp             HHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT--------STTHHHHHHHHHHHH-----HHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc--------cHHHHHHHHHHHHHH-----HHHHHHHHHHHHhccCHHHH
Confidence            34566788889999888887532111111111        000111111111111     23455667777778888888


Q ss_pred             HHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH-----CCCCCChhhH
Q 010994          151 LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA-----KNIFPDNFSY  204 (496)
Q Consensus       151 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~  204 (496)
                      ..+.+.+..... -|...|..+|.++...|+...|.+.|+++.+     .|+.|+..+-
T Consensus        82 ~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   82 LRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            888887776633 3677788888888888888888888777643     3777776653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.34  E-value=0.0012  Score=43.45  Aligned_cols=61  Identities=18%  Similarity=0.293  Sum_probs=44.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994          383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN  450 (496)
Q Consensus       383 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  450 (496)
                      +...+...|++++|...|+++++       ..| +...+..+..++...|++++|...|+++.+..|.+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~-------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALK-------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHC-------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            45667788888888888888876       334 45677778888888888888888888777655543

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.34  E-value=0.0018  Score=52.74  Aligned_cols=102  Identities=14%  Similarity=0.210  Sum_probs=63.7

Q ss_pred             ChhHHHHHHHHHHhc-----CCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHH
Q 010994          165 STLTYNDIMCLYSKT-----GQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWST  239 (496)
Q Consensus       165 ~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  239 (496)
                      |..+|..+++.|.+.     |..+-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.             
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~-------------  110 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQA-------------  110 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHH-------------
Confidence            677777777776644     4555566677888888998899999998888764 2221 0111111             


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC
Q 010994          240 YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLG  286 (496)
Q Consensus       240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~  286 (496)
                         +...|  -.+.+-|++++++|...|+-||..++..+++.+++.+
T Consensus       111 ---~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s  152 (228)
T PF06239_consen  111 ---EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS  152 (228)
T ss_pred             ---HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence               11111  1234556777777777777777777777777765554

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.32  E-value=0.02  Score=55.24  Aligned_cols=139  Identities=13%  Similarity=0.069  Sum_probs=94.7

Q ss_pred             CCCchhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhc--------CchhHHHHHHHHHH
Q 010994          304 RYINRDYITMLEALMKL-----GEHEEAEKVLKEWELSGNSYDT-RIPNAVIIGYCNN--------GLVQNAEAILEDLV  369 (496)
Q Consensus       304 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~--------g~~~~a~~~~~~~~  369 (496)
                      ..+...|...+++....     ++...|..+|++..+.  .|+- ..+..+..++...        ++...+.+...+..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            35667788887775432     2377899999999887  4443 3444433333222        12334444444433


Q ss_pred             hc-CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          370 EK-GKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       370 ~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                      .. ....+...|..+.......|++++|...+++++.       +.|+...|..+...+...|+.++|...+++.....|
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~-------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID-------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            32 1223557788887777788999999999999987       568888899999999999999999999998877544


Q ss_pred             CCH
Q 010994          449 MNR  451 (496)
Q Consensus       449 ~~~  451 (496)
                      .++
T Consensus       485 ~~p  487 (517)
T PRK10153        485 GEN  487 (517)
T ss_pred             CCc
Confidence            433

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.31  E-value=0.015  Score=50.11  Aligned_cols=108  Identities=13%  Similarity=0.091  Sum_probs=79.6

Q ss_pred             HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc---CchhHHHHHHHHHHhc
Q 010994          295 WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN---GLVQNAEAILEDLVEK  371 (496)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~  371 (496)
                      ++.-....+ .|...|..|..+|...|+.+.|..-|....+.. .+++..+..+..++...   ....++..+|+++...
T Consensus       145 Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~  222 (287)
T COG4235         145 LETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL  222 (287)
T ss_pred             HHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc
Confidence            333334444 677888888888888888888888888887763 33555566666555433   2356788888888887


Q ss_pred             CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          372 GKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       372 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +.. |..+...+...+...|++.+|...|+.|+.
T Consensus       223 D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         223 DPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             CCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            765 777888888888889999999999998886

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.29  E-value=0.011  Score=51.43  Aligned_cols=104  Identities=15%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      |...+..+.+.|++++|...|+.+++..+...  ...+--+...|...|++++|...|+.++..+   .+-+.....+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y---P~s~~~~dAl~k  222 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY---PKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCCcchhHHHHH
Confidence            44444444556777777777777776543211  2355566677777777777777777776511   111112334444


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNR  451 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  451 (496)
                      +...+...|+.++|..+++.+.+..|.+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~  251 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD  251 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence            55566677777777777777766555444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.29  E-value=0.029  Score=41.92  Aligned_cols=56  Identities=13%  Similarity=0.156  Sum_probs=30.0

Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..++++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344455566666666666555554422  22344455555556666666666665554

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.21  E-value=0.099  Score=43.83  Aligned_cols=167  Identities=11%  Similarity=0.005  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC--chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994          275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYI--NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY  352 (496)
Q Consensus       275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (496)
                      +-.....+...|++++|...|+.+....+...  ......++.++.+.|+++.|...++...+.-+.....-+...+.+.
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHH
Confidence            33445567788999999999998887765322  2445677888889999999999999988763322222223233332


Q ss_pred             HhcC-------------chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 010994          353 CNNG-------------LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKV  419 (496)
Q Consensus       353 ~~~g-------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~  419 (496)
                      +...             ...+|...               +..++.-|-......+|...+..+..      .+   ...
T Consensus        88 ~~~~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~------~l---a~~  143 (203)
T PF13525_consen   88 SYYKQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRN------RL---AEH  143 (203)
T ss_dssp             HHHHHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHH------HH---HHH
T ss_pred             HHHHhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHH------HH---HHH
Confidence            2111             12223333               34444444444555555554444433      00   011


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHhCC
Q 010994          420 ITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQ---MYHAFIKANIRNG  465 (496)
Q Consensus       420 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g  465 (496)
                      -..+...|.+.|.+..|..-++.+.+..|.+..   ....++.+|.+.|
T Consensus       144 e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~  192 (203)
T PF13525_consen  144 ELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLG  192 (203)
T ss_dssp             HHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhC
Confidence            123556688888888888888888887666553   4667777888887

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.20  E-value=0.0019  Score=43.13  Aligned_cols=64  Identities=13%  Similarity=0.244  Sum_probs=53.5

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccC-CHHHHHHHHHHHHhc
Q 010994          376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEG-SVQDVEAFVAALRTV  446 (496)
Q Consensus       376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~  446 (496)
                      ++.+|..+...+...|++++|+..|.++++       +.|+ ...+..+..++...| ++++|.+.+++..+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~-------~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIE-------LDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHH-------HSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            567888999999999999999999999998       4554 567888888899998 799999999877653

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.19  E-value=0.031  Score=41.80  Aligned_cols=89  Identities=22%  Similarity=0.213  Sum_probs=37.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCC--cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcC
Q 010994          316 ALMKLGEHEEAEKVLKEWELSGNSYD--TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA--TTPNSWAVVAAGYFDAG  391 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~  391 (496)
                      ++-..|+.++|..+|++....|....  ...+-.+...+...|++++|..++++.....+.  .+......+..++...|
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g   89 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG   89 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence            34444555555555555554443322  122333444444555555555555554443211  01111122223444455


Q ss_pred             ChHHHHHHHHHHH
Q 010994          392 KTERGFQCMKAAL  404 (496)
Q Consensus       392 ~~~~a~~~~~~~~  404 (496)
                      +.++|+..+-..+
T Consensus        90 r~~eAl~~~l~~l  102 (120)
T PF12688_consen   90 RPKEALEWLLEAL  102 (120)
T ss_pred             CHHHHHHHHHHHH
Confidence            5555555554443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.11  Score=43.75  Aligned_cols=131  Identities=11%  Similarity=0.043  Sum_probs=69.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH-----H
Q 010994          241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML-----E  315 (496)
Q Consensus       241 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-----~  315 (496)
                      +.++.++...|.+.-....+++..+..++.++.....+++.-.+.|+.+.|...|+...+...+.+..+++.++     .
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            34455555555555555555555555544555555556666666666666666666444444434444433332     2


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994          316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG  372 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (496)
                      .+.-.+++..|...+.++..... .|+...|.-.-+..-.|+...|++.++.|.+..
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             heecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            23345566666666666665432 233333333333333567777777777777654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.14  E-value=0.18  Score=45.18  Aligned_cols=281  Identities=14%  Similarity=0.023  Sum_probs=161.7

Q ss_pred             HhhcCHHHHHHHHHhchhc-CCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHCCCCCChhHH----HHHHHHHHhcCC
Q 010994          109 GRVHGFLSAESYFSNLKDD-EKTYQTYGALL--NCYVRQRQTDKALSHFRKMKEMGIALSTLTY----NDIMCLYSKTGQ  181 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~li--~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~~~  181 (496)
                      ...|+-..|.++-.+.... ..|....-.|+  ..-.-.|+++.|.+-|+.|..     |+.+-    ..|.-..-+.|+
T Consensus        95 agAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~-----dPEtRllGLRgLyleAqr~Ga  169 (531)
T COG3898          95 AGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD-----DPETRLLGLRGLYLEAQRLGA  169 (531)
T ss_pred             hccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc-----ChHHHHHhHHHHHHHHHhccc
Confidence            3456667776666554422 12322222222  333456888889888888876     33332    333333456677


Q ss_pred             CCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHH--HHHHHHHHh---cCChHHH
Q 010994          182 YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTY--ASAAHFYIK---ANLIDKA  256 (496)
Q Consensus       182 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~---~~~~~~a  256 (496)
                      .+.|..+-++.-..-. .-...+...+...|..|+++.|+++++.-....-+.++..--  ..|+.+-..   ..+...|
T Consensus       170 reaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A  248 (531)
T COG3898         170 REAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA  248 (531)
T ss_pred             HHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence            7778777777655422 134667778888888899999888887766333344443221  122222111   2344455


Q ss_pred             HHHHHHHHHhcccCccchH-HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          257 SDVLKKAEERLEQKDGIGY-NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       257 ~~~~~~m~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (496)
                      ...-.+..  ...||...- ..-..++.+.|+..++-.+++.+-+..+.|+.    ..+....+.|+.  +..-++...+
T Consensus       249 r~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdt--a~dRlkRa~~  320 (531)
T COG3898         249 RDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDT--ALDRLKRAKK  320 (531)
T ss_pred             HHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCc--HHHHHHHHHH
Confidence            55444432  234554332 23356788888888888888887777665543    122233445543  3333332221


Q ss_pred             c-CCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010994          336 S-GNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA-GKTERGFQCMKAALS  405 (496)
Q Consensus       336 ~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  405 (496)
                      . ..+| +....-.+..+-...|++..|..--+.....  .|....|..|...-... |+-.++.+.+.+.+.
T Consensus       321 L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         321 LESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            1 1223 4445556667777788888777666655543  46667777776665544 888888888888877

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.09  E-value=0.0042  Score=42.03  Aligned_cols=55  Identities=24%  Similarity=0.329  Sum_probs=33.6

Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..|.+.+++++|.++++.+...++. +...|......+...|++++|.+.++++++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3455666666666666666665444 555566666666666666666666666655

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.03  E-value=0.012  Score=51.10  Aligned_cols=97  Identities=12%  Similarity=0.031  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCCC-CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC----HHHHHHHH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT----YQTYGALL  138 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~li  138 (496)
                      .|...+..+.+.|++++|+..|+.+.+..+.. ..++.+..+...+...|++++|...|..+....|+    ...+-.+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            45555555556677777777777777765211 12344555556666666666666666666554442    33444445


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 010994          139 NCYVRQRQTDKALSHFRKMKEM  160 (496)
Q Consensus       139 ~~~~~~g~~~~A~~~~~~m~~~  160 (496)
                      ..+...|+.++|..+|+.+.+.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            5555666666666666666554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.02  E-value=0.24  Score=44.59  Aligned_cols=82  Identities=17%  Similarity=0.088  Sum_probs=36.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc
Q 010994          276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN  355 (496)
Q Consensus       276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  355 (496)
                      +..+.-+...|+...|.++-.+.    ..|+..-|...+.+++..+++++-..+...      +-.+..|..++..|.+.
T Consensus       181 ~~Ti~~li~~~~~k~A~kl~k~F----kv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  181 NDTIRKLIEMGQEKQAEKLKKEF----KVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHc----CCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence            33344444445444444433211    224444455555555555555544443221      11234455555555555


Q ss_pred             CchhHHHHHHHH
Q 010994          356 GLVQNAEAILED  367 (496)
Q Consensus       356 g~~~~a~~~~~~  367 (496)
                      |+..+|..+..+
T Consensus       251 ~~~~eA~~yI~k  262 (319)
T PF04840_consen  251 GNKKEASKYIPK  262 (319)
T ss_pred             CCHHHHHHHHHh
Confidence            555555544433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.91  E-value=0.0087  Score=50.59  Aligned_cols=99  Identities=17%  Similarity=0.304  Sum_probs=69.3

Q ss_pred             HHHHHhchhcCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC-----------
Q 010994          118 ESYFSNLKDDEKTYQTYGALLNCYVRQ-----RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ-----------  181 (496)
Q Consensus       118 ~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~-----------  181 (496)
                      +..|..+...+.|-.+|-..+..+...     +.++-....+..|.+-|+..|..+|+.|++.+=+..-           
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~  133 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL  133 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence            345555555556777888888777654     5667777778889999999999999999987654321           


Q ss_pred             -----CCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994          182 -----YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD  216 (496)
Q Consensus       182 -----~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~  216 (496)
                           -+=++.++++|..+|+.||..+-..+++++++.+-
T Consensus       134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                 12356667777777777777777777777766554

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.84  E-value=0.0043  Score=42.69  Aligned_cols=66  Identities=17%  Similarity=0.262  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC-CCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994          378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW-KPD-PKVITSILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      .+|+.+...|...|++++|+..|+++++. .+..|- .|+ ..++..+..++...|++++|.+.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35666777777777777777777777763 111121 122 3456666667777777777777776544

...

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.79  E-value=0.081  Score=44.04  Aligned_cols=209  Identities=12%  Similarity=0.093  Sum_probs=102.8

Q ss_pred             hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHH
Q 010994           62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCY  141 (496)
Q Consensus        62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~  141 (496)
                      ...|..-..+|...+++++|...+....+-..  .+...+       -....++.|.-+.+++....--+..|+.....|
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yE--nnrslf-------hAAKayEqaamLake~~klsEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNRSLF-------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcccHH-------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            34566777778888888888887777664221  111111       112223444444444433222244566667777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC---C--CCCChhhHHHHHHHHhhcCC
Q 010994          142 VRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK---N--IFPDNFSYRICINSYGARSD  216 (496)
Q Consensus       142 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~--~~p~~~~~~~li~~~~~~~~  216 (496)
                      ..+|..+.|-..+++.-+.                .++.++++|+++|++...-   +  .+.-...+..+-+.+.+...
T Consensus       102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k  165 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK  165 (308)
T ss_pred             HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence            8888877777776664332                1223344444444433221   0  00011123334445555556


Q ss_pred             hHHHHHHHHHhh----cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---cccCccchHHHHHHHHHhcCCHH
Q 010994          217 LEGMEIILREME----SQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER---LEQKDGIGYNFLISLYASLGNKS  289 (496)
Q Consensus       217 ~~~a~~~~~~~~----~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~~~~~  289 (496)
                      +++|-..+.+-.    .-.....-...|...|-.|....++..|...++.-.+.   .-..+..+...|+.+| ..|+.+
T Consensus       166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E  244 (308)
T KOG1585|consen  166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE  244 (308)
T ss_pred             hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence            665554443322    00111011123444555566666777777777663222   1123445566666655 456666


Q ss_pred             HHHHHHH
Q 010994          290 EVLRLWD  296 (496)
Q Consensus       290 ~a~~~~~  296 (496)
                      ++.+++.
T Consensus       245 ~~~kvl~  251 (308)
T KOG1585|consen  245 EIKKVLS  251 (308)
T ss_pred             HHHHHHc
Confidence            6655543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.63  Score=45.53  Aligned_cols=341  Identities=12%  Similarity=0.092  Sum_probs=186.4

Q ss_pred             CCCCChhhHHH-----HHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc---CHHHHHHHHHhchhcC
Q 010994           57 GNKVRVGELQR-----IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH---GFLSAESYFSNLKDDE  128 (496)
Q Consensus        57 ~~~~~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~A~~~~~~~~~~~  128 (496)
                      |++.+..-|..     +|+.+...+.|..|+++-.++.....  .....+......+.+..   +-+.+..+-+++...-
T Consensus       427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~--~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~  504 (829)
T KOG2280|consen  427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPES--QGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL  504 (829)
T ss_pred             CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccc--cccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence            77777776654     57888888999999999888865431  12344444455444432   2222223322332211


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhH
Q 010994          129 KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIA----LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSY  204 (496)
Q Consensus       129 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  204 (496)
                      ....+|..+.......|+++-|..+++.=.+.+..    .+..-+...+.-+.+.|+.+-...++-.+...   .+...|
T Consensus       505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l  581 (829)
T KOG2280|consen  505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSL  581 (829)
T ss_pred             CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHH
Confidence            23566777888888899999999887653222211    12333455666677788888877777776653   111222


Q ss_pred             HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH-H-HH-hcccCccchHHHHHHH
Q 010994          205 RICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK-A-EE-RLEQKDGIGYNFLISL  281 (496)
Q Consensus       205 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-m-~~-~~~~~~~~~~~~l~~~  281 (496)
                      ...      ..+...|..+|.+..++.+-    .+   +-..|-. ++-.++...|.. - .. ..+.+-..........
T Consensus       582 ~~~------l~~~p~a~~lY~~~~r~~~~----~~---l~d~y~q-~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~  647 (829)
T KOG2280|consen  582 FMT------LRNQPLALSLYRQFMRHQDR----AT---LYDFYNQ-DDNHQALASFHLQASYAAETIEGRIPALKTAANA  647 (829)
T ss_pred             HHH------HHhchhhhHHHHHHHHhhch----hh---hhhhhhc-ccchhhhhhhhhhhhhhhhhhcccchhHHHHHHH
Confidence            222      22345566666655522221    11   2222222 222222222211 0 00 0011111122223333


Q ss_pred             HHhcCCH----------HHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994          282 YASLGNK----------SEVLRLWDLEKTA-CKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII  350 (496)
Q Consensus       282 ~~~~~~~----------~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (496)
                      +.+....          ..-+++.+..... +..-...+.+--+.-+...|+..+|.++-.+.+    -||-..|-.-+.
T Consensus       648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~  723 (829)
T KOG2280|consen  648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLT  723 (829)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHH
Confidence            3333221          1111222222111 112233455566667777888888888776653    468888888888


Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE  430 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  430 (496)
                      +++..+++++-+++-+...      .+.-|.-+..+|.+.|+.++|.+++-+.-       |.   .    -...+|.+.
T Consensus       724 aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~-------~l---~----ekv~ay~~~  783 (829)
T KOG2280|consen  724 ALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG-------GL---Q----EKVKAYLRV  783 (829)
T ss_pred             HHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC-------Ch---H----HHHHHHHHh
Confidence            8888888887666544332      24567778888888898888888886642       22   1    456677888


Q ss_pred             CCHHHHHHHH
Q 010994          431 GSVQDVEAFV  440 (496)
Q Consensus       431 g~~~~a~~~~  440 (496)
                      |++.+|.+.-
T Consensus       784 ~~~~eAad~A  793 (829)
T KOG2280|consen  784 GDVKEAADLA  793 (829)
T ss_pred             ccHHHHHHHH
Confidence            8888877653

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.71  E-value=0.43  Score=42.97  Aligned_cols=111  Identities=14%  Similarity=0.160  Sum_probs=86.0

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994          308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY  387 (496)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  387 (496)
                      .+.+..+.-+...|+...|.++-.+..    -|+...|-..+.+|+..++|++-.++-..   +   -.+.-|..++..|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHH
Confidence            456666777888999988888876652    47889999999999999999988776432   1   1457899999999


Q ss_pred             HhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010994          388 FDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAAL  443 (496)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  443 (496)
                      .+.|+..+|..+..++          ++     ..-+..|.++|++.+|.+.-.+.
T Consensus       248 ~~~~~~~eA~~yI~k~----------~~-----~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKI----------PD-----EERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HHCCCHHHHHHHHHhC----------Ch-----HHHHHHHHHCCCHHHHHHHHHHc
Confidence            9999999998888762          11     34566788899999998765443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.61  E-value=0.54  Score=42.85  Aligned_cols=174  Identities=17%  Similarity=0.069  Sum_probs=85.1

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHhhcCCC--CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994          204 YRICINSYGARSDLEGMEIILREMESQPH--IVLDWSTYASAAHFYIK---ANLIDKASDVLKKAEERLEQKDGIGYNFL  278 (496)
Q Consensus       204 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  278 (496)
                      ...++-+|....+++...++++.+..-..  +.-....-....-++.+   .|+.++|.+++..+......+++.+|..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            33455567777777777777777762111  11122222234445555   67777777777775444445666666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc-
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL-  357 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-  357 (496)
                      ...|-..         |.   ..+. .+..             ..++|...|.+.-+.  .||...--.+...+.-.|. 
T Consensus       224 GRIyKD~---------~~---~s~~-~d~~-------------~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~  275 (374)
T PF13281_consen  224 GRIYKDL---------FL---ESNF-TDRE-------------SLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHD  275 (374)
T ss_pred             HHHHHHH---------HH---HcCc-cchH-------------HHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCc
Confidence            6655321         10   0000 1111             145555555544433  2333222222222222222 


Q ss_pred             hh---HHHHHH---HH-HHhcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          358 VQ---NAEAIL---ED-LVEKG---KATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       358 ~~---~a~~~~---~~-~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+   +..++-   .. +.++|   ...|.-.+.+++.++.-.|+.++|.+.+++|..
T Consensus       276 ~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~  333 (374)
T PF13281_consen  276 FETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFK  333 (374)
T ss_pred             ccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence            11   111111   11 11222   223555666777777778888888888888876

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.60  E-value=0.044  Score=41.42  Aligned_cols=54  Identities=13%  Similarity=0.318  Sum_probs=41.3

Q ss_pred             CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhC
Q 010994          411 KGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV--IPMNRQMYHAFIKANIRN  464 (496)
Q Consensus       411 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~  464 (496)
                      ....|+..+..+++.+|+..|++..|.++.+.+.+.  .+.+...|..|+.-....
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            457788888888888888888888888888877774  555677888887655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.60  E-value=0.038  Score=41.79  Aligned_cols=52  Identities=8%  Similarity=-0.114  Sum_probs=31.8

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-cccCccchHHHHHHHH
Q 010994          231 PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER-LEQKDGIGYNFLISLY  282 (496)
Q Consensus       231 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~  282 (496)
                      ....|+..+..+++.+|+..+++..|+++.+.+.+. +++.+..+|..|++-.
T Consensus        46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            344566666667777777777777777777666443 3334455666666544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.51  E-value=0.08  Score=41.51  Aligned_cols=136  Identities=13%  Similarity=0.123  Sum_probs=78.4

Q ss_pred             CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHH--
Q 010994           60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGAL--  137 (496)
Q Consensus        60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l--  137 (496)
                      -+...|..-+. +.+.+..++|+.-|.++.+.|.-....-.......+..+.|+...|...|+++....|.+....-+  
T Consensus        57 ~sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR  135 (221)
T COG4649          57 KSGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR  135 (221)
T ss_pred             cchHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence            34444544444 456777888888888888877422222233334556667777777777777776654333322111  


Q ss_pred             ---HHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC
Q 010994          138 ---LNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN  196 (496)
Q Consensus       138 ---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  196 (496)
                         .-.+..+|.++....-.+.+-..|-+.-...-..|.-+-.+.|++.+|.+.|..+....
T Consensus       136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da  197 (221)
T COG4649         136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDA  197 (221)
T ss_pred             HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccc
Confidence               12244566677666666665544433334444555556666677777777776666543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.48  E-value=0.015  Score=39.33  Aligned_cols=61  Identities=16%  Similarity=0.207  Sum_probs=42.1

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994          384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR  451 (496)
Q Consensus       384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  451 (496)
                      -..|.+.+++++|.+++++++.       ..| +...+......+.+.|++++|.+.|+...+..|.+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~-------~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~   63 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALE-------LDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP   63 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHH-------hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence            3567777888888888888876       334 445566667777778888888888877766554443

>PRK11906 transcriptional regulator; Provisional

Probab=96.47  E-value=0.23  Score=46.02  Aligned_cols=144  Identities=9%  Similarity=-0.050  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHh-cCCCCCc-ccHHHHHHHHH---------hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994          323 HEEAEKVLKEWEL-SGNSYDT-RIPNAVIIGYC---------NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG  391 (496)
Q Consensus       323 ~~~a~~~~~~~~~-~~~~~~~-~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~  391 (496)
                      .+.|..+|.+... +...|+- ..|..+..++.         ......+|.++-++..+.+.. |+.....+..+....+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence            4566677777762 1223332 22333322222         123456777888888888766 8888888888888888


Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhCC-Cc
Q 010994          392 KTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEGSVQDVEAFVAALRTVIPM--NRQMYHAFIKANIRNG-KG  467 (496)
Q Consensus       392 ~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g-~~  467 (496)
                      +++.|...|+++..       +.||. .+|......+.-.|+.++|.+.+++..+..|.  -..+....++.|+.++ ++
T Consensus       353 ~~~~a~~~f~rA~~-------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~  425 (458)
T PRK11906        353 QAKVSHILFEQAKI-------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKN  425 (458)
T ss_pred             chhhHHHHHHHHhh-------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhh
Confidence            89999999999976       77875 46666666677789999999999986665433  3345666677899999 88


Q ss_pred             HHHHHHH
Q 010994          468 VDELLDS  474 (496)
Q Consensus       468 a~~~~~~  474 (496)
                      |+.++.+
T Consensus       426 ~~~~~~~  432 (458)
T PRK11906        426 NIKLYYK  432 (458)
T ss_pred             hHHHHhh
Confidence            9888754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.45  E-value=0.38  Score=46.10  Aligned_cols=196  Identities=12%  Similarity=0.105  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHH-----HHHHHHHhcCCHHHHHHHH
Q 010994           80 QALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYG-----ALLNCYVRQRQTDKALSHF  154 (496)
Q Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~  154 (496)
                      +.+.-++++.+++   -.|+. ..+...++-.|++.+|-++|.+--....-...|+     -+..-+...|..++-..+.
T Consensus       618 ~li~EL~~~k~rg---e~P~~-iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~  693 (1081)
T KOG1538|consen  618 ELISELEERKKRG---ETPND-LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLI  693 (1081)
T ss_pred             HHHHHHHHHHhcC---CCchH-HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence            3344455566655   22332 2345677778888888888876443222122221     1233344444444433333


Q ss_pred             HHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHH------HHHCCC---CCChhhHHHHHHHHhhcCChHHHHHHHH
Q 010994          155 RKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTE------MKAKNI---FPDNFSYRICINSYGARSDLEGMEIILR  225 (496)
Q Consensus       155 ~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~------m~~~~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~  225 (496)
                      +.-.+.  ..|..--.+....+...|+.++|..+.-+      +.+-+-   ..+..+...+..-+-+...+..|-++|.
T Consensus       694 RKRA~W--Ar~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~  771 (1081)
T KOG1538|consen  694 RKRADW--ARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFL  771 (1081)
T ss_pred             HHHHHH--hhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHH
Confidence            221110  00111112344555566777777655321      111111   1223344444444455566667777777


Q ss_pred             HhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 010994          226 EMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW  295 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  295 (496)
                      .|- +         ...++......++|++|..+-+..    ++.-..+|..-.+.++...++++|.+.|
T Consensus       772 k~g-D---------~ksiVqlHve~~~W~eAFalAe~h----Pe~~~dVy~pyaqwLAE~DrFeEAqkAf  827 (1081)
T KOG1538|consen  772 KMG-D---------LKSLVQLHVETQRWDEAFALAEKH----PEFKDDVYMPYAQWLAENDRFEEAQKAF  827 (1081)
T ss_pred             Hhc-c---------HHHHhhheeecccchHhHhhhhhC----ccccccccchHHHHhhhhhhHHHHHHHH
Confidence            774 2         123666777788888888777663    2222233444444445555555554433

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.44  E-value=0.036  Score=52.20  Aligned_cols=131  Identities=21%  Similarity=0.197  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHh
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVR  143 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~  143 (496)
                      ..+.++..+-+.|.++.|+.+..+-             ...+++..+.|+++.|.+..++..    +...|..|.+...+
T Consensus       297 ~~~~i~~fL~~~G~~e~AL~~~~D~-------------~~rFeLAl~lg~L~~A~~~a~~~~----~~~~W~~Lg~~AL~  359 (443)
T PF04053_consen  297 QGQSIARFLEKKGYPELALQFVTDP-------------DHRFELALQLGNLDIALEIAKELD----DPEKWKQLGDEALR  359 (443)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHSS-H-------------HHHHHHHHHCT-HHHHHHHCCCCS----THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHhhcCCh-------------HHHhHHHHhcCCHHHHHHHHHhcC----cHHHHHHHHHHHHH
Confidence            3455555555555555555553222             122345555555555555433322    34555555555555


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHH
Q 010994          144 QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEII  223 (496)
Q Consensus       144 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~  223 (496)
                      .|+++-|.+.|.+..+         |..|+-.|.-.|+.++..++.+.....|-      ++....++.-.|+.++..++
T Consensus       360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~l  424 (443)
T PF04053_consen  360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDL  424 (443)
T ss_dssp             TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHH
T ss_pred             cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHH
Confidence            5666555555554332         33444445555555554444444444321      33444444444555555444


Q ss_pred             HHH
Q 010994          224 LRE  226 (496)
Q Consensus       224 ~~~  226 (496)
                      +.+
T Consensus       425 L~~  427 (443)
T PF04053_consen  425 LIE  427 (443)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.41  E-value=1.2  Score=44.37  Aligned_cols=179  Identities=12%  Similarity=0.137  Sum_probs=117.7

Q ss_pred             ChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhh----hHHHhhcCHHHHHHHHHhchhc-CCCHHHHH
Q 010994           61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQL----DLIGRVHGFLSAESYFSNLKDD-EKTYQTYG  135 (496)
Q Consensus        61 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~  135 (496)
                      .......-+..+.+...++-|+.+-+.   .+   .+++....+.    +.+.+.|++++|...+-+.... +|.     
T Consensus       333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----  401 (933)
T KOG2114|consen  333 IEKDLETKLDILFKKNLYKVAINLAKS---QH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----  401 (933)
T ss_pred             eeccHHHHHHHHHHhhhHHHHHHHHHh---cC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----
Confidence            444567778888888888888877543   22   3455555443    4445789999998877654432 332     


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC
Q 010994          136 ALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS  215 (496)
Q Consensus       136 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~  215 (496)
                      .+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-.++.+.-. .|..  ..-....+..+.+.+
T Consensus       402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~sn  477 (933)
T KOG2114|consen  402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSN  477 (933)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhC
Confidence            3556666777777788888888888887 77777888999999998888766655443 2211  112445667777777


Q ss_pred             ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          216 DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      -+++|.-+-.+.. .     +...   +-..+-..+++++|++.+..+
T Consensus       478 yl~~a~~LA~k~~-~-----he~v---l~ille~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  478 YLDEAELLATKFK-K-----HEWV---LDILLEDLHNYEEALRYISSL  516 (933)
T ss_pred             hHHHHHHHHHHhc-c-----CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence            7777777665554 1     1222   333345567888888888765

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.39  E-value=0.51  Score=40.06  Aligned_cols=66  Identities=12%  Similarity=0.142  Sum_probs=44.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994          382 VVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN  450 (496)
Q Consensus       382 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  450 (496)
                      .+..-|.+.|.+..|..-++++++.+   ...+-....+-.+..+|...|-.++|...-+-+....|.+
T Consensus       172 ~IaryY~kr~~~~AA~nR~~~v~e~y---~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s  237 (254)
T COG4105         172 AIARYYLKRGAYVAAINRFEEVLENY---PDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHhcChHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence            34567888888888888888888721   1111112455666778888888888888877666644433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.39  E-value=0.084  Score=45.03  Aligned_cols=96  Identities=13%  Similarity=0.039  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHhccChhHHHHHHHHHHhCCC-CCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC----HHHHHHHH
Q 010994           64 ELQRIIRDLRKRKRFSQALEVSDWMNRKGI-CVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT----YQTYGALL  138 (496)
Q Consensus        64 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~li  138 (496)
                      .|+.-+..+ +.|++..|...|...++..+ .+..++.+-.+.+.+...|+++.|...|..+....|+    +..+-.|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            577777655 77779999999999998763 2356677777788888888888888888888776542    56777788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 010994          139 NCYVRQRQTDKALSHFRKMKEM  160 (496)
Q Consensus       139 ~~~~~~g~~~~A~~~~~~m~~~  160 (496)
                      .+..+.|+.++|..+|+++.++
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            8888888888888888888776

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.36  E-value=0.82  Score=42.08  Aligned_cols=405  Identities=11%  Similarity=0.073  Sum_probs=190.3

Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhc----C------------C
Q 010994           66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD----E------------K  129 (496)
Q Consensus        66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~------------~  129 (496)
                      +.++++|.-. +.+.....+....+..  +.++-......-.+-+.+.++.|.+.+..=.+.    .            +
T Consensus        50 grilnAffl~-nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~  126 (549)
T PF07079_consen   50 GRILNAFFLN-NLDLMEKQLMELRQQF--GKSAYLPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFS  126 (549)
T ss_pred             hHHHHHHHHh-hHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhh
Confidence            4555655433 3444444444444433  122222222333444677788877766543222    1            2


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCChhHHHHHHHHHHhc--------CCCCcHHHHHHH------
Q 010994          130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEM----GIALSTLTYNDIMCLYSKT--------GQYEKVPDVLTE------  191 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~~~~~~--------~~~~~a~~~~~~------  191 (496)
                      |...-+..++++.+.|++.++..+++++..+    ...-+..+|+.++-.+.++        ...+-.-+.|+.      
T Consensus       127 df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~k  206 (549)
T PF07079_consen  127 DFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLK  206 (549)
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHH
Confidence            2233366778889999999999888887554    3336888888765554432        122222222222      


Q ss_pred             -HHHC------CCCCChhhHHHHHHHHhhc--CChHHHHHHHHHhhcCCCCCCCHHH-HHHHHHHHHhcCChHHHHHHHH
Q 010994          192 -MKAK------NIFPDNFSYRICINSYGAR--SDLEGMEIILREMESQPHIVLDWST-YASAAHFYIKANLIDKASDVLK  261 (496)
Q Consensus       192 -m~~~------~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~~~~~~~~~~~a~~~~~  261 (496)
                       |...      .+-|...-...++....-.  .++.--.++++... ..-+.|+... ...+..-+.+  +.+++..+.+
T Consensus       207 ki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We-~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce  283 (549)
T PF07079_consen  207 KIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE-NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCE  283 (549)
T ss_pred             HHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH-hhccCCchhHHHHHHHHHHhc--ChHHHHHHHH
Confidence             2111      1223322223333222211  12222233333333 3333454322 1223333333  5666666665


Q ss_pred             HHHHhccc----CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchh-----HHHHHHHHH-hc---CCHHHHHH
Q 010994          262 KAEERLEQ----KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRD-----YITMLEALM-KL---GEHEEAEK  328 (496)
Q Consensus       262 ~m~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~-~~---~~~~~a~~  328 (496)
                      .+....+.    .=..++..++....+.++...|.+.+.....-.+......     -..+-+..+ ..   -+...-..
T Consensus       284 ~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~  363 (549)
T PF07079_consen  284 AIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN  363 (549)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH
Confidence            55433211    1235688888888888998888888885544333211110     111112222 11   11222233


Q ss_pred             HHHHHHhcCCCCCcccHHHHHHH---HHhcCc-hhHHHHHHHHHHhcCCCCCHhHHHH----HHHHHHhc---CChHHHH
Q 010994          329 VLKEWELSGNSYDTRIPNAVIIG---YCNNGL-VQNAEAILEDLVEKGKATTPNSWAV----VAAGYFDA---GKTERGF  397 (496)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~---~~~~~a~  397 (496)
                      +++.+...++. ......-++.+   +-+.|. -++|+.+++.+.+-..- |..+-|.    +=..|.+.   .....-+
T Consensus       364 lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLl  441 (549)
T PF07079_consen  364 LWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLL  441 (549)
T ss_pred             HHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence            33333332211 11111222222   334444 66677777776653211 3322222    22233322   2223333


Q ss_pred             HHHHHHHHhhhcCCCCCCCH----HHHHHHHHH--HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHH
Q 010994          398 QCMKAALSVYVEGKGWKPDP----KVITSILSK--LGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVD  469 (496)
Q Consensus       398 ~~~~~~~~~~~~~~~~~p~~----~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~  469 (496)
                      .+-+-..     +.|++|-.    ..-+.+..|  +..+|++.++.-.-..+.+ +.|++.+|..++-++..+.  ++|.
T Consensus       442 kLe~fi~-----e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~-iaPS~~~~RLlGl~l~e~k~Y~eA~  515 (549)
T PF07079_consen  442 KLEDFIT-----EVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK-IAPSPQAYRLLGLCLMENKRYQEAW  515 (549)
T ss_pred             HHHHHHH-----hcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHhhHHHHH
Confidence            3222222     35666543    233333332  4556777777665555544 4457777777776666665  6777


Q ss_pred             HHHHHHHhCCCCCChhHHHH
Q 010994          470 ELLDSMKADGIDEDEETKEI  489 (496)
Q Consensus       470 ~~~~~m~~~g~~p~~~t~~~  489 (496)
                      +++..     ++|+..+++.
T Consensus       516 ~~l~~-----LP~n~~~~ds  530 (549)
T PF07079_consen  516 EYLQK-----LPPNERMRDS  530 (549)
T ss_pred             HHHHh-----CCCchhhHHH
Confidence            77766     4556555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK15331 chaperone protein SicA; Provisional

Probab=96.36  E-value=0.071  Score=41.83  Aligned_cols=84  Identities=10%  Similarity=-0.074  Sum_probs=32.2

Q ss_pred             hcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 010994          249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEK  328 (496)
Q Consensus       249 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (496)
                      ..|++++|..+|.-+....+ .+..-|..|..++-..+++++|+..|........ .|+..+.-...++...|+.+.|..
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence            34444444444444333221 2222333334444444444444444443222221 222233333444444444444444


Q ss_pred             HHHHHH
Q 010994          329 VLKEWE  334 (496)
Q Consensus       329 ~~~~~~  334 (496)
                      .|....
T Consensus       127 ~f~~a~  132 (165)
T PRK15331        127 CFELVN  132 (165)
T ss_pred             HHHHHH
Confidence            444443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.34  E-value=0.29  Score=38.11  Aligned_cols=125  Identities=10%  Similarity=0.098  Sum_probs=75.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 010994          135 GALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGAR  214 (496)
Q Consensus       135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  214 (496)
                      ..++..+...+.......+++.+...|. .+...++.++..|++.+ ..+..+.+..      .++......+++.|.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence            4566777777788888888888777663 57777888888887653 2233333331      12334445567777777


Q ss_pred             CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcccCccchHHHHHHHHH
Q 010994          215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA-NLIDKASDVLKKAEERLEQKDGIGYNFLISLYA  283 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~  283 (496)
                      +-++++.-++.++. .         +...+..+... ++++.|.+++.+      ..+...|..++..+.
T Consensus        83 ~l~~~~~~l~~k~~-~---------~~~Al~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l  136 (140)
T smart00299       83 KLYEEAVELYKKDG-N---------FKDAIVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL  136 (140)
T ss_pred             CcHHHHHHHHHhhc-C---------HHHHHHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            77777777776664 1         22233334444 667777776665      234456666665554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.33  E-value=0.81  Score=41.76  Aligned_cols=167  Identities=16%  Similarity=0.029  Sum_probs=82.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcCC--C-CchhHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994          278 LISLYASLGNKSEVLRLWDLEKTACKR--Y-INRDYITMLEALMK---LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG  351 (496)
Q Consensus       278 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (496)
                      ++-+|....+++..+++.+.+......  + ....-....-++.+   .|+.++|.+++..+......+++.+|..+...
T Consensus       147 lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRI  226 (374)
T PF13281_consen  147 LLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRI  226 (374)
T ss_pred             HHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            333455555555555555544333110  0 11111122333344   55666666666554444344555555555544


Q ss_pred             HHh---------cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh-H---HHHHHH---HHHHHhhhcCCC---
Q 010994          352 YCN---------NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT-E---RGFQCM---KAALSVYVEGKG---  412 (496)
Q Consensus       352 ~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~-~---~a~~~~---~~~~~~~~~~~~---  412 (496)
                      |-.         ....++|...|.+.-+..  ||..+=-.++..+...|.. +   +..++-   .....    +.|   
T Consensus       227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg----~kg~~~  300 (374)
T PF13281_consen  227 YKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLG----RKGSLE  300 (374)
T ss_pred             HHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHH----hhcccc
Confidence            432         123677787777766543  4443322222233333322 1   111211   11111    122   


Q ss_pred             CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994          413 WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN  450 (496)
Q Consensus       413 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  450 (496)
                      -..+.-.+.+++.++.-.|+.++|.+..+.+....+|.
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            22344566778888888999999999999888765443

>PRK15331 chaperone protein SicA; Provisional

Probab=96.33  E-value=0.12  Score=40.58  Aligned_cols=86  Identities=12%  Similarity=-0.002  Sum_probs=40.2

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      ...|++++|..+|.-+...++. +..-+..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|.
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~  125 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR  125 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence            3445555555555554443221 2333344444444455555555555544433322 3333444455555555555555


Q ss_pred             HHHHHHHH
Q 010994          398 QCMKAALS  405 (496)
Q Consensus       398 ~~~~~~~~  405 (496)
                      ..|..++.
T Consensus       126 ~~f~~a~~  133 (165)
T PRK15331        126 QCFELVNE  133 (165)
T ss_pred             HHHHHHHh
Confidence            55555543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.32  E-value=0.018  Score=39.51  Aligned_cols=62  Identities=26%  Similarity=0.287  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHh----cc-cCc-cchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994          238 STYASAAHFYIKANLIDKASDVLKKAEER----LE-QKD-GIGYNFLISLYASLGNKSEVLRLWDLEK  299 (496)
Q Consensus       238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~  299 (496)
                      .+|+.+...|...|++++|+..|++..+.    |. .|+ ..++..+..++...|++++|++.+++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44566666677777777777777665432    10 111 3456666666677777777777666543

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.15  E-value=0.16  Score=48.03  Aligned_cols=132  Identities=16%  Similarity=0.145  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS  210 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  210 (496)
                      ....+.++..+-+.|-.+.|+.+.+.-..            -.....+.|+.+.|.++.++      .++...|..|...
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~  356 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIALEIAKE------LDDPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHH
Confidence            34456666666666777776666433221            23444556666666555332      2255567777777


Q ss_pred             HhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994          211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE  290 (496)
Q Consensus       211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~  290 (496)
                      ..+.|+++-|++.|.+.. +         +..|+-.|.-.|+.+...++.+.....|-      ++....++.-.|+.++
T Consensus       357 AL~~g~~~lAe~c~~k~~-d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~  420 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKAK-D---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEE  420 (443)
T ss_dssp             HHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHH
T ss_pred             HHHcCCHHHHHHHHHhhc-C---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHH
Confidence            777777777777776664 1         44466666666776666666555444332      4444555555666666


Q ss_pred             HHHHHH
Q 010994          291 VLRLWD  296 (496)
Q Consensus       291 a~~~~~  296 (496)
                      ..+++.
T Consensus       421 cv~lL~  426 (443)
T PF04053_consen  421 CVDLLI  426 (443)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=96.11  E-value=2.1  Score=44.45  Aligned_cols=331  Identities=14%  Similarity=0.103  Sum_probs=162.5

Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHhCCC--CCCCcchhhhhhhHHH-hhcCHHHHHHHHHhchhcCCCHHHHHHHH---
Q 010994           65 LQRIIRDLRKRKRFSQALEVSDWMNRKGI--CVFAPCDHAVQLDLIG-RVHGFLSAESYFSNLKDDEKTYQTYGALL---  138 (496)
Q Consensus        65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~li---  138 (496)
                      .-.-++.+++.+++.+|.++.+.-.-.-.  ....|..+...+.++. ..++.+--..++..+.+.+.+...|....   
T Consensus       680 VLa~vr~~l~~~~y~~AF~~~RkhRidlnii~d~~~~~Fl~nv~afl~~in~~~~l~lfl~~lk~eDvtk~~y~~~~~s~  759 (1265)
T KOG1920|consen  680 VLAKVRTLLDRLRYKEAFEVMRKHRIDLNIIFDYDPKRFLKNVPAFLKQINRVNHLELFLTELKEEDVTKTMYSSTSGSG  759 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCccchhhcCHHHHHhhHHHHhccCCcHHHHHHHHhhcccchhhhhhcccccccc
Confidence            34556667778888887766554332211  1123444544454444 34555555555555554433322222211   


Q ss_pred             -HHHHhc----CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC--CCCcHHHHHHHHHHCCCCCChhh--------
Q 010994          139 -NCYVRQ----RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG--QYEKVPDVLTEMKAKNIFPDNFS--------  203 (496)
Q Consensus       139 -~~~~~~----g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~--------  203 (496)
                       ..|...    ..++...+.+.....+ ..|+ .-.-.++.+|.+.+  ..+.++....+.......++...        
T Consensus       760 k~~~~~r~~~d~kv~~vc~~vr~~l~~-~~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~~~~ad~al~hll~L  837 (1265)
T KOG1920|consen  760 KQVYMSRDPYDNKVNSVCDAVRNALER-RAPD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQVAVSADEALKHLLFL  837 (1265)
T ss_pred             ceeEEeccchhhHHHHHHHHHHHHHhh-cCcc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhcccchhHHHHHHHHHhh
Confidence             112111    2233444444443333 2445 44456777777776  55666666655553211111110        


Q ss_pred             --HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-------------hcCChHHHHHHHHHHHHhcc
Q 010994          204 --YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYI-------------KANLIDKASDVLKKAEERLE  268 (496)
Q Consensus       204 --~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-------------~~~~~~~a~~~~~~m~~~~~  268 (496)
                        -+.+.++....=|++-|..+-+.-+      -|+.-|-.+++-+-             ..++++.|+.-+.++     
T Consensus       838 vdvn~lfn~ALgtYDl~Lal~VAq~Sq------kDPkEyLP~L~el~~m~~~~rkF~ID~~L~ry~~AL~hLs~~-----  906 (1265)
T KOG1920|consen  838 VDVNELFNSALGTYDLDLALLVAQKSQ------KDPKEYLPFLNELKKMETLLRKFKIDDYLKRYEDALSHLSEC-----  906 (1265)
T ss_pred             ccHHHHHHhhhcccchHHHHHHHHHhc------cChHHHHHHHHHHhhchhhhhheeHHHHHHHHHHHHHHHHHc-----
Confidence              1112222112223333333322222      11122222222111             123344444333332     


Q ss_pred             cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH----HHHHhcCCHHHHHHHHHHHHhcCCCCCccc
Q 010994          269 QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML----EALMKLGEHEEAEKVLKEWELSGNSYDTRI  344 (496)
Q Consensus       269 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  344 (496)
                        +...|.-.++.--+.|-+.+|+.+++        ++...+..+.    ..+...+.+++|.-.|+..-+.        
T Consensus       907 --~~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl--------  968 (1265)
T KOG1920|consen  907 --GETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL--------  968 (1265)
T ss_pred             --CccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH--------
Confidence              22334444444455666666666655        5555544444    4445567777777777655332        


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHh--HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPN--SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                       ..-+.+|..+|++.+|+.+-.++....   |..  +-..|+.-+...+++-+|.++..+...        .|     ..
T Consensus       969 -ekAl~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s--------d~-----~~ 1031 (1265)
T KOG1920|consen  969 -EKALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLS--------DP-----EE 1031 (1265)
T ss_pred             -HHHHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhc--------CH-----HH
Confidence             346777888888888888877765421   222  225677778888888888888877654        12     12


Q ss_pred             HHHHHhccCCHHHHHHHHHHH
Q 010994          423 ILSKLGDEGSVQDVEAFVAAL  443 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~  443 (496)
                      .+..+++...|++|.++....
T Consensus      1032 av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1032 AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred             HHHHHhhHhHHHHHHHHHHhc
Confidence            233445555677777665543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.02  E-value=0.1  Score=48.16  Aligned_cols=62  Identities=10%  Similarity=0.145  Sum_probs=33.5

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH----HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK----VITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      ...++.+..+|...|++++|+..|+++++       +.|+..    .|..+..+|...|+.++|...+++..+
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALe-------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALE-------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555555555555555555555555554       444432    355555555555555555555554443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.02  E-value=1.7  Score=42.65  Aligned_cols=267  Identities=12%  Similarity=0.049  Sum_probs=142.0

Q ss_pred             chhhhhhhHHHhhcCHHHHHHHHHhchhcC---C---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH
Q 010994           99 CDHAVQLDLIGRVHGFLSAESYFSNLKDDE---K---TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI  172 (496)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  172 (496)
                      -.+..+.......|+.+.|..+++.-+...   |   +..-+...+.-..+.|+.+-...++-.+...   .+...|...
T Consensus       508 iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~  584 (829)
T KOG2280|consen  508 ISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMT  584 (829)
T ss_pred             eeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHH
Confidence            345566777778999999999887654432   1   2333455667777788888888777766553   122222222


Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHH-HH---hhcCCCCCCCHHHHHHHHHHHH
Q 010994          173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIIL-RE---MESQPHIVLDWSTYASAAHFYI  248 (496)
Q Consensus       173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~-~~---~~~~~~~~~~~~~~~~li~~~~  248 (496)
                      +      .+.-.|..+|.+..++.   |..   .+-+.|-...+...+-.+. +.   .....+..|+..+   ....+.
T Consensus       585 l------~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a  649 (829)
T KOG2280|consen  585 L------RNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT---AANAFA  649 (829)
T ss_pred             H------HhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHh
Confidence            2      23345556665554421   111   1111111111111111110 10   0000111233322   333333


Q ss_pred             hcC----------ChHHHHHHHHHHHHh-cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994          249 KAN----------LIDKASDVLKKAEER-LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL  317 (496)
Q Consensus       249 ~~~----------~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  317 (496)
                      +..          +..+-+.+.+.+... +..-...+.+--+..+...|+-.+|.++-.+.    ..||...|-.-+.++
T Consensus       650 ~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aL  725 (829)
T KOG2280|consen  650 KSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTAL  725 (829)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHH
Confidence            322          222333444444222 32334455556666667777777777665433    237777777777788


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      +..+++++-+++-+...      .+.-|..++..|.+.|+.++|.+++.+....     .    ....+|.+.|++.+|.
T Consensus       726 a~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ekv~ay~~~~~~~eAa  790 (829)
T KOG2280|consen  726 ADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EKVKAYLRVGDVKEAA  790 (829)
T ss_pred             HhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HHHHHHHHhccHHHHH
Confidence            87777777665544321      2566777788888888888888877665442     1    3456677777777776


Q ss_pred             HHHHH
Q 010994          398 QCMKA  402 (496)
Q Consensus       398 ~~~~~  402 (496)
                      ++--+
T Consensus       791 d~A~~  795 (829)
T KOG2280|consen  791 DLAAE  795 (829)
T ss_pred             HHHHH
Confidence            66544

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.99  E-value=0.55  Score=36.58  Aligned_cols=126  Identities=15%  Similarity=0.105  Sum_probs=67.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994          310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD  389 (496)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  389 (496)
                      ...++..+...+.......+++.+...+. .+....+.++..|++.+. ++....+..   .   .+.......+..|.+
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~---~~~yd~~~~~~~c~~   81 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K---SNHYDIEKVGKLCEK   81 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c---cccCCHHHHHHHHHH
Confidence            34455556566666666666666666552 455566666666665432 223333321   1   233344456666666


Q ss_pred             cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010994          390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE-GSVQDVEAFVAALRTVIPMNRQMYHAFIKANI  462 (496)
Q Consensus       390 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  462 (496)
                      .+-++++..++.++-.              +...+..+... ++.+.|.+++++     ..++..|..++..+.
T Consensus        82 ~~l~~~~~~l~~k~~~--------------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       82 AKLYEEAVELYKKDGN--------------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             cCcHHHHHHHHHhhcC--------------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            6666666666666421              11122222222 666667666654     235556666665554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.97  E-value=0.1  Score=45.28  Aligned_cols=83  Identities=13%  Similarity=0.178  Sum_probs=70.4

Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      .++..++..+...|+++.+...++++.+..+. +...|..++.+|.+.|+...|+..|+.+.....+..|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            35567888888899999999999999988766 88889999999999999999999999988877778899998888777


Q ss_pred             HHHH
Q 010994          423 ILSK  426 (496)
Q Consensus       423 l~~~  426 (496)
                      +...
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            6666

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.92  E-value=0.49  Score=35.44  Aligned_cols=58  Identities=17%  Similarity=0.239  Sum_probs=26.6

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .-+..+...|+-|.-.+++..+.+ +-.+++...-.+..+|.+.|+..++-+++.++-+
T Consensus        91 ~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   91 LALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            344444555555555555555543 1233455555555555555555555555555554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.83  E-value=0.2  Score=45.28  Aligned_cols=92  Identities=13%  Similarity=0.047  Sum_probs=50.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010994          379 SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFI  458 (496)
Q Consensus       379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  458 (496)
                      ++..+..+|.+.+++..|++.-.+.+.      --++|....-.=..++...|+++.|+..|+++.+..|.|..+-+.|+
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe------~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~  332 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLE------LDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELI  332 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHh------cCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            445555566666666666666666654      22334445555555666666666666666666665555555544444


Q ss_pred             HHHHhCC---CcHHHHHHHHH
Q 010994          459 KANIRNG---KGVDELLDSMK  476 (496)
Q Consensus       459 ~~~~~~g---~~a~~~~~~m~  476 (496)
                      ..-.+..   +...++|..|-
T Consensus       333 ~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  333 KLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            4444333   33445555554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.77  E-value=0.58  Score=44.94  Aligned_cols=162  Identities=15%  Similarity=-0.004  Sum_probs=95.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc------hhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCccc
Q 010994          275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYIN------RDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRI  344 (496)
Q Consensus       275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  344 (496)
                      +..++....=.|+-+.+++.+....+....-.+      -.|..++..++.    ..+.+.|.+++..+.+.  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            445555566677777777777755443221111      123333433333    34677888888888876  566655


Q ss_pred             HHHH-HHHHHhcCchhHHHHHHHHHHhcC---CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHH
Q 010994          345 PNAV-IIGYCNNGLVQNAEAILEDLVEKG---KATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVI  420 (496)
Q Consensus       345 ~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~  420 (496)
                      |... .+.+...|++++|++.|++.....   .......+-.+...+.-.+++++|.+.|..+.+      .-..+..+|
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~------~s~WSka~Y  342 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLK------ESKWSKAFY  342 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHh------ccccHHHHH
Confidence            5433 234556788888888888755311   112334556666777888888888888888876      223333444


Q ss_pred             HHHHHH-HhccCCH-------HHHHHHHHHHH
Q 010994          421 TSILSK-LGDEGSV-------QDVEAFVAALR  444 (496)
Q Consensus       421 ~~l~~~-~~~~g~~-------~~a~~~~~~~~  444 (496)
                      ..+..+ +...|+.       ++|.++|+++.
T Consensus       343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            433332 3445666       77777777654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.73  E-value=0.18  Score=46.54  Aligned_cols=61  Identities=10%  Similarity=-0.038  Sum_probs=31.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----ccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994          308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT----RIPNAVIIGYCNNGLVQNAEAILEDLVE  370 (496)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (496)
                      ..++.+..+|.+.|++++|...|++..+.  .|+.    ..|..+..+|...|+.++|+..+++..+
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555555555555555555555555544  2222    1245555555555555555555555554

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.65  E-value=1  Score=37.11  Aligned_cols=89  Identities=16%  Similarity=0.098  Sum_probs=63.9

Q ss_pred             HHHhhcCHHHHHHHHHhchhcCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcH
Q 010994          107 LIGRVHGFLSAESYFSNLKDDEKT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV  185 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a  185 (496)
                      .|-..|-+..|.--|.+.....|+ +.+||-|.-.+...|+++.|.+.|+...+.+..-+-...|.-|. +.--|++.-|
T Consensus        74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LA  152 (297)
T COG4785          74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLA  152 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhh
Confidence            455566777777777777777786 88899999999999999999999999988754433333333333 2345788888


Q ss_pred             HHHHHHHHHCC
Q 010994          186 PDVLTEMKAKN  196 (496)
Q Consensus       186 ~~~~~~m~~~~  196 (496)
                      .+=|...-+.+
T Consensus       153 q~d~~~fYQ~D  163 (297)
T COG4785         153 QDDLLAFYQDD  163 (297)
T ss_pred             HHHHHHHHhcC
Confidence            87777766653

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.65  E-value=1.5  Score=38.96  Aligned_cols=164  Identities=12%  Similarity=0.039  Sum_probs=84.4

Q ss_pred             chHHHHHHHHHhcCCHH---HHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994          273 IGYNFLISLYASLGNKS---EVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       273 ~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (496)
                      .++..++.+|...+..+   +|..+++.+....+ .....+..-+..+.+.++.+.+.+++..|...-.. ....+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~-~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDH-SESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccc-ccchHHHHH
Confidence            34566677777766544   45555555544443 23455556677777788888888888888876221 334445555


Q ss_pred             HHHHh--cCchhHHHHHHHHHHhcCCCCCHh-HHHHH----HHHHHhcCC------hHHHHHHHHHHHHhhhcCCCCCCC
Q 010994          350 IGYCN--NGLVQNAEAILEDLVEKGKATTPN-SWAVV----AAGYFDAGK------TERGFQCMKAALSVYVEGKGWKPD  416 (496)
Q Consensus       350 ~~~~~--~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l----~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~p~  416 (496)
                      ..+..  ......|...+..+....+.|... ....+    +......++      .+...+++....+    ..+.+.+
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~----~~~~~ls  238 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEH----SLGKQLS  238 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHH----HhcCCCC
Confidence            44422  223445666666665444444432 11111    111112111      3334444443222    1233334


Q ss_pred             HHHHH---HHHH----HHhccCCHHHHHHHHHH
Q 010994          417 PKVIT---SILS----KLGDEGSVQDVEAFVAA  442 (496)
Q Consensus       417 ~~~~~---~l~~----~~~~~g~~~~a~~~~~~  442 (496)
                      ..+..   ++++    .+.+.++++.|.+.|+-
T Consensus       239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            44333   3332    34567888888888874

It is also involved in sporulation [].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.63  E-value=0.12  Score=44.01  Aligned_cols=31  Identities=26%  Similarity=0.431  Sum_probs=27.5

Q ss_pred             CcHHHHHHHHHhCCCCCChhHHHHHHhhhcC
Q 010994          466 KGVDELLDSMKADGIDEDEETKEILVCTMEK  496 (496)
Q Consensus       466 ~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~k  496 (496)
                      +=++.++++|...|+.||.++-.+|++++-|
T Consensus       140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr  170 (406)
T KOG3941|consen  140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGR  170 (406)
T ss_pred             hHHHHHHHHHHHcCCCCchHHHHHHHHHhcc
Confidence            5578999999999999999999999988743

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.63  E-value=0.046  Score=32.41  Aligned_cols=40  Identities=10%  Similarity=0.166  Sum_probs=25.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010994          419 VITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFI  458 (496)
Q Consensus       419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  458 (496)
                      ++..+..+|...|++++|.++++++.+..|.|+..|..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La   42 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA   42 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence            3455666666666666666666666666666666665544

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=95.59  E-value=2.1  Score=40.25  Aligned_cols=182  Identities=13%  Similarity=0.095  Sum_probs=133.5

Q ss_pred             CCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 010994           95 VFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC  174 (496)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~  174 (496)
                      +.+......++..++..++++..+.+..++...+-+-..|-.++.+|..+ ..++-..+|+++.+..+. |+..-..|..
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            35555666778889999999999999999988878888899999999988 678889999999888664 5555555666


Q ss_pred             HHHhcCCCCcHHHHHHHHHHCCCCC--C---hhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010994          175 LYSKTGQYEKVPDVLTEMKAKNIFP--D---NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK  249 (496)
Q Consensus       175 ~~~~~~~~~~a~~~~~~m~~~~~~p--~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  249 (496)
                      .|-+ ++.+++...|.+...+=++-  +   ...|.-+...-  ..+.|...++...+....|...-...+.-+-..|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            5555 88899999999887652220  1   12455444322  457788888888887566665666667777788899


Q ss_pred             cCChHHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994          250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLY  282 (496)
Q Consensus       250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~  282 (496)
                      ..++++|++++..+.+.. ..|..+...++.-+
T Consensus       218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            999999999999877654 35555555555544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.58  E-value=0.29  Score=43.44  Aligned_cols=166  Identities=17%  Similarity=0.018  Sum_probs=87.2

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc-----cCccch
Q 010994          203 SYRICINSYGARSDLEGMEIILREMESQPHIVLD---WSTYASAAHFYIKANLIDKASDVLKKAEERLE-----QKDGIG  274 (496)
Q Consensus       203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~  274 (496)
                      .|..+.+++-+.-++.+++.+-..-..-+|..|.   -....++..++...+.++++++.|+....-.-     .....+
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            3445555555555555555554443322333221   12223355666666677777777776533211     122356


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcC---CCCc-hhHH-----HHHHHHHhcCCHHHHHHHHHHHHhc----CCCC-
Q 010994          275 YNFLISLYASLGNKSEVLRLWDLEKTACK---RYIN-RDYI-----TMLEALMKLGEHEEAEKVLKEWELS----GNSY-  340 (496)
Q Consensus       275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-  340 (496)
                      +..+...|.+..++++|.-+.........   ..|. .-|.     -|.-++...|++..|.+.-++..+.    |-.+ 
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            77777777777777777665543332211   1111 1122     2334456667777777666665543    3211 


Q ss_pred             CcccHHHHHHHHHhcCchhHHHHHHHHH
Q 010994          341 DTRIPNAVIIGYCNNGLVQNAEAILEDL  368 (496)
Q Consensus       341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~  368 (496)
                      .......+.+.|-..|+.|.|+.-|++.
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            1223345667777788888777766654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.54  E-value=0.88  Score=43.74  Aligned_cols=58  Identities=12%  Similarity=0.072  Sum_probs=28.4

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH-HhcCCh-------HHHHHHHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY-FDAGKT-------ERGFQCMKAALS  405 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~~~~-------~~a~~~~~~~~~  405 (496)
                      -+.-.+.-.+++++|...|..+.+.+-. ...+|..+..+| ...|+.       ++|.++|.++-.
T Consensus       310 El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  310 ELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            3444455556666666666666554322 233333333222 234444       666666666555

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.48  E-value=0.46  Score=40.67  Aligned_cols=105  Identities=17%  Similarity=0.209  Sum_probs=65.3

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKA--TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVI  420 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~  420 (496)
                      .|+.-+.. .+.|++..|...|...++..+.  -....+--|..++...|++++|...|..+.+.    .+-.| -+..+
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~----~P~s~KApdal  218 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD----YPKSPKAPDAL  218 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh----CCCCCCChHHH
Confidence            45555543 3456677777777777765432  01123344677777777777777777777762    22223 23566


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994          421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQM  453 (496)
Q Consensus       421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  453 (496)
                      --|.....+.|+.++|..+|+.+.+.+|.+...
T Consensus       219 lKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA  251 (262)
T COG1729         219 LKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA  251 (262)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence            666667777788888888888777766655543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.42  E-value=1.5  Score=37.42  Aligned_cols=169  Identities=14%  Similarity=0.070  Sum_probs=90.5

Q ss_pred             HHhcCCHHHHHHHHHHHHhhcC--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc----
Q 010994          282 YASLGNKSEVLRLWDLEKTACK--RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN----  355 (496)
Q Consensus       282 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  355 (496)
                      -.+.|++++|.+.|+.+....+  .....+...++.++.+.++++.|....++..+.-+.....-|-..|.+++.-    
T Consensus        44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~  123 (254)
T COG4105          44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID  123 (254)
T ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence            3456667777777766655444  1122344455566666777777777777666653332233344444444421    


Q ss_pred             ---Cchh---HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHH---HHHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 010994          356 ---GLVQ---NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERG---FQCMKAALSVYVEGKGWKPDPKVITSILSK  426 (496)
Q Consensus       356 ---g~~~---~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  426 (496)
                         .+..   .|..-|++++++=  ||.             .-...|   +..+...+.      +      -=..+.+-
T Consensus       124 ~~~rDq~~~~~A~~~f~~~i~ry--PnS-------------~Ya~dA~~~i~~~~d~LA------~------~Em~Iary  176 (254)
T COG4105         124 DVTRDQSAARAAFAAFKELVQRY--PNS-------------RYAPDAKARIVKLNDALA------G------HEMAIARY  176 (254)
T ss_pred             ccccCHHHHHHHHHHHHHHHHHC--CCC-------------cchhhHHHHHHHHHHHHH------H------HHHHHHHH
Confidence               1222   2233333333321  222             111222   222222221      1      11245677


Q ss_pred             HhccCCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994          427 LGDEGSVQDVEAFVAALRTVIPMNR---QMYHAFIKANIRNG--KGVDELLDSMKA  477 (496)
Q Consensus       427 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g--~~a~~~~~~m~~  477 (496)
                      |.+.|.+..|..-++.+.+..+.+.   ..+-.+..+|...|  ++|...-.-+..
T Consensus       177 Y~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         177 YLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            8999999999999998888755444   45667788899999  566655544443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.42  E-value=1.5  Score=38.06  Aligned_cols=145  Identities=11%  Similarity=0.064  Sum_probs=63.6

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHH
Q 010994          141 YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGM  220 (496)
Q Consensus       141 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a  220 (496)
                      ....|++.+|..+|......... +...--.++.+|...|+.+.|..++..+...--.........-|..+.+.....+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            34455555555555555443222 33444445555555555555555555543321111111111223333333333333


Q ss_pred             HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-ccCccchHHHHHHHHHhcCCHH
Q 010994          221 EIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL-EQKDGIGYNFLISLYASLGNKS  289 (496)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~  289 (496)
                      ..+-.+.-  .++ -|...-..+...+...|+.+.|.+.+-.+.... --.|...-..++..+.-.|.-+
T Consensus       223 ~~l~~~~a--adP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~D  289 (304)
T COG3118         223 QDLQRRLA--ADP-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPAD  289 (304)
T ss_pred             HHHHHHHH--hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCC
Confidence            33333332  111 234444445555566666666655554443321 1134445555555555555333

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=1.7  Score=37.88  Aligned_cols=142  Identities=9%  Similarity=0.016  Sum_probs=66.3

Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC
Q 010994           49 ELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE  128 (496)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  128 (496)
                      -+.+|..+-.++....-..-...+...|++.+|..+|........  -+.+....+...+...|+.+.|..++..++...
T Consensus       121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~  198 (304)
T COG3118         121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQA  198 (304)
T ss_pred             HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence            344454443333222223333445566677777777776666541  234444445556666666666666666655543


Q ss_pred             CCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 010994          129 KTYQT--YGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA  194 (496)
Q Consensus       129 ~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  194 (496)
                      .+...  ...-|..+.+.....+...+-.+.-..  +-|...-..+...+...|+.+.|.+.+-.+.+
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~  264 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR  264 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            32111  112233333333333333333332221  11444444555555555666555555544443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.36  E-value=0.34  Score=37.18  Aligned_cols=73  Identities=14%  Similarity=0.097  Sum_probs=42.3

Q ss_pred             hHHHhhcCHHHHHHHHHhchhcCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 010994          106 DLIGRVHGFLSAESYFSNLKDDEK----TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK  178 (496)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~  178 (496)
                      ....+.|++++|.+.|+.+....|    ...+--.|+.+|.+.+++++|...+++..+.....-..-|...+.+++.
T Consensus        18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            334445555555555555555433    2445556777777778888888777777776443333445545554443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.29  E-value=0.66  Score=42.05  Aligned_cols=96  Identities=9%  Similarity=-0.042  Sum_probs=68.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994          308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY  387 (496)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  387 (496)
                      .++..+.-++.+.+++..|.+........+ ++|....-.-..+|...|+++.|+..|+++++..+. |-..-+.++..-
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~  335 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLK  335 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            456778888888999999998888888775 446666666778888889999999999998886543 444444444444


Q ss_pred             HhcCChH-HHHHHHHHHHH
Q 010994          388 FDAGKTE-RGFQCMKAALS  405 (496)
Q Consensus       388 ~~~~~~~-~a~~~~~~~~~  405 (496)
                      .+..... ...++|..|..
T Consensus       336 ~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            4444433 34677777776

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.25  E-value=0.5  Score=35.25  Aligned_cols=92  Identities=14%  Similarity=0.074  Sum_probs=64.3

Q ss_pred             HHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc---hhHHHHHHHHHhcC
Q 010994          245 HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN---RDYITMLEALMKLG  321 (496)
Q Consensus       245 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~  321 (496)
                      .+++..|+.+.|++.|.+....- +.....||.-.+++.-.|+.++|++-+++..+.......   ..|..-...|...|
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g  129 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG  129 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence            45677788888888888776643 356677888888888888888888888777665442211   23444455667778


Q ss_pred             CHHHHHHHHHHHHhcC
Q 010994          322 EHEEAEKVLKEWELSG  337 (496)
Q Consensus       322 ~~~~a~~~~~~~~~~~  337 (496)
                      +.+.|..=|+..-+.|
T Consensus       130 ~dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  130 NDDAARADFEAAAQLG  145 (175)
T ss_pred             chHHHHHhHHHHHHhC
Confidence            8888888777776665

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.22  E-value=2.1  Score=38.13  Aligned_cols=160  Identities=11%  Similarity=0.085  Sum_probs=92.4

Q ss_pred             hHHHHHHHHHHHHhcccCccchHHHHHHHHHh--cC----CHHHHHHHHHHHHhhcC---CCCchhHHHHHHHHHhcCC-
Q 010994          253 IDKASDVLKKAEERLEQKDGIGYNFLISLYAS--LG----NKSEVLRLWDLEKTACK---RYINRDYITMLEALMKLGE-  322 (496)
Q Consensus       253 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~-  322 (496)
                      +++...+++.|.+.|...+..+|-+..-....  ..    ....+..+|+.|++..+   .++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34556677777777777777666553333322  22    34567888888888776   3334455555443  3333 


Q ss_pred             ---HHHHHHHHHHHHhcCCCCCcc--cHHHHHHHHHhcCc--hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994          323 ---HEEAEKVLKEWELSGNSYDTR--IPNAVIIGYCNNGL--VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER  395 (496)
Q Consensus       323 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  395 (496)
                         .+.++.+|+.+.+.|+..+..  ....++........  ...+.++++.+.+.|+++....|..+.-...-.+..++
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence               456677888888877754433  22333322222211  45778889999999988877777766655544444435


Q ss_pred             HHHHHHHHHHhhhcCCCCC
Q 010994          396 GFQCMKAALSVYVEGKGWK  414 (496)
Q Consensus       396 a~~~~~~~~~~~~~~~~~~  414 (496)
                      ...-+.++.+...++.++.
T Consensus       236 ~~~~i~ev~~~L~~~k~~~  254 (297)
T PF13170_consen  236 IVEEIKEVIDELKEQKGFG  254 (297)
T ss_pred             HHHHHHHHHHHHhhCcccC
Confidence            5555555544333344544

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.20  E-value=1.2  Score=39.81  Aligned_cols=228  Identities=14%  Similarity=0.052  Sum_probs=118.7

Q ss_pred             HhcCCCCcHHHHHHHHHHC--CCCCChhhHHHHHHHHhhcCChHHHHHHH-HHhhcCCCCCCC---HHHHHHHHHHHHhc
Q 010994          177 SKTGQYEKVPDVLTEMKAK--NIFPDNFSYRICINSYGARSDLEGMEIIL-REMESQPHIVLD---WSTYASAAHFYIKA  250 (496)
Q Consensus       177 ~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~---~~~~~~li~~~~~~  250 (496)
                      ....+.++|+..+.+-..+  +..---.+|..+..+.++.|.+++++..- ..|........+   ...|..+.+++-+.
T Consensus        17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l   96 (518)
T KOG1941|consen   17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKL   96 (518)
T ss_pred             hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777665543  11122345677777788888877766543 222211111111   12223333334333


Q ss_pred             CChHHHHHHHHHHHHh-cccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcC
Q 010994          251 NLIDKASDVLKKAEER-LEQK---DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-----RYINRDYITMLEALMKLG  321 (496)
Q Consensus       251 ~~~~~a~~~~~~m~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~  321 (496)
                      -++.+++.+-..-... |..|   .......+..++...+.++++++.|+....-..     ......+..+...|.+..
T Consensus        97 ~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~  176 (518)
T KOG1941|consen   97 CEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK  176 (518)
T ss_pred             HHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH
Confidence            4444444443332211 1111   112344466666777777888887775544322     112245777777788888


Q ss_pred             CHHHHHHHHHHHHhc----CCCCCcc-cH-----HHHHHHHHhcCchhHHHHHHHHHH----hcCCCCC-HhHHHHHHHH
Q 010994          322 EHEEAEKVLKEWELS----GNSYDTR-IP-----NAVIIGYCNNGLVQNAEAILEDLV----EKGKATT-PNSWAVVAAG  386 (496)
Q Consensus       322 ~~~~a~~~~~~~~~~----~~~~~~~-~~-----~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~p~-~~~~~~l~~~  386 (496)
                      |+++|.-+..+..+.    ++. |.. -|     -.+..++-..|+.-.|.+..++..    +.|-.|. ....-.+.+.
T Consensus       177 D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  177 DYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             hhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            888877666655432    211 111 11     223344556677777776666643    3332211 1234455666


Q ss_pred             HHhcCChHHHHHHHHHHHH
Q 010994          387 YFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       387 ~~~~~~~~~a~~~~~~~~~  405 (496)
                      |-..|+.+.|+.-|+.+..
T Consensus       256 yR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHhcccHhHHHHHHHHHHH
Confidence            7777788887777777764

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.18  E-value=2.1  Score=37.95  Aligned_cols=19  Identities=11%  Similarity=-0.050  Sum_probs=11.0

Q ss_pred             HhccChhHHHHHHHHHHhC
Q 010994           73 RKRKRFSQALEVSDWMNRK   91 (496)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~~   91 (496)
                      .+.|+.+.|..++......
T Consensus         4 ~~~~~~~~A~~~~~K~~~~   22 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDL   22 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhH
Confidence            3456666666666665553

It is also involved in sporulation [].

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.06  E-value=0.27  Score=42.77  Aligned_cols=74  Identities=20%  Similarity=0.266  Sum_probs=42.3

Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH-----hCCCCCChhHHHHHH
Q 010994          419 VITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK-----ADGIDEDEETKEILV  491 (496)
Q Consensus       419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~-----~~g~~p~~~t~~~l~  491 (496)
                      ++..++..+..+|+.+.+...++.+....|-+...|..++.+|.+.|  ..|++.|+++.     +.|+.|...+.....
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            34445555555666666666666665555566666666666666666  45555555443     356666666655444


Q ss_pred             h
Q 010994          492 C  492 (496)
Q Consensus       492 ~  492 (496)
                      .
T Consensus       235 ~  235 (280)
T COG3629         235 E  235 (280)
T ss_pred             H
Confidence            3

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.04  E-value=0.64  Score=34.71  Aligned_cols=89  Identities=12%  Similarity=0.066  Sum_probs=59.6

Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH---HHHHHHHHHH
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP---KVITSILSKL  427 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~---~~~~~l~~~~  427 (496)
                      ++...|+.+.|++.|.+.+..-+. ....||.-.+++--+|+.++|++-++++++.    .|-+ ..   ..|..-...|
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleL----ag~~-trtacqa~vQRg~ly  125 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALEL----AGDQ-TRTACQAFVQRGLLY  125 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHh----cCcc-chHHHHHHHHHHHHH
Confidence            456678888888888887775433 6777888888888888888888888888772    1222 11   1233333356


Q ss_pred             hccCCHHHHHHHHHHHHh
Q 010994          428 GDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       428 ~~~g~~~~a~~~~~~~~~  445 (496)
                      ...|+.+.|..-|+....
T Consensus       126 Rl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  126 RLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             HHhCchHHHHHhHHHHHH
Confidence            667888888877776544

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=94.99  E-value=2  Score=36.66  Aligned_cols=209  Identities=13%  Similarity=0.067  Sum_probs=116.6

Q ss_pred             CCCCChhhHHHHHHHH-hhcCChHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHh---ccc
Q 010994          196 NIFPDNFSYRICINSY-GARSDLEGMEIILREMESQPHIVLDW--STYASAAHFYIKANLIDKASDVLKKAEER---LEQ  269 (496)
Q Consensus       196 ~~~p~~~~~~~li~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~  269 (496)
                      +..||+..-|..-++- .+..++++|+.-|.+...-.|-+-+|  .+.-.+|..+.+.+++++..+.|.++..-   .+.
T Consensus        21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT  100 (440)
T KOG1464|consen   21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT  100 (440)
T ss_pred             CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence            4456655433332221 23457788888888776223332333  33456778888888888888888887542   111


Q ss_pred             --CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc-----CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 010994          270 --KDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC-----KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY--  340 (496)
Q Consensus       270 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--  340 (496)
                        -+....|+++..-.-..+.+....+|+.-...-     .+.--.|-.-+...|...+++.+..++++++..+.-..  
T Consensus       101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG  180 (440)
T KOG1464|consen  101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG  180 (440)
T ss_pred             ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence              233456667766666666666666665332211     12222344556677777777777777777776542111  


Q ss_pred             ---------CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CCHhHHHHHHHH-----HHhcCChHHHHHHHHHHHH
Q 010994          341 ---------DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TTPNSWAVVAAG-----YFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       341 ---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~~~~  405 (496)
                               -..+|..-|..|....+-.+...++++...-... |.+.. ...|.-     ..+.|++++|-.-|-++.+
T Consensus       181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK  259 (440)
T KOG1464|consen  181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK  259 (440)
T ss_pred             chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence                     1234555566666666666666666666655322 23222 222332     2355666777666666665

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.96  E-value=1.1  Score=33.58  Aligned_cols=63  Identities=21%  Similarity=0.336  Sum_probs=36.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA  374 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (496)
                      ...+..+...|+-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|++
T Consensus        90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            34455566667777777777666542 2456666666777777777777777777777666643

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.89  E-value=2.1  Score=36.40  Aligned_cols=202  Identities=18%  Similarity=0.111  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994          237 WSTYASAAHFYIKANLIDKASDVLKKAEER-LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE  315 (496)
Q Consensus       237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  315 (496)
                      ...+......+...+++..+...+...... ........+......+...++...+...+.........+ .........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence            344455555666666666666666655432 122333445555555555666666666666544433322 122222222


Q ss_pred             -HHHhcCCHHHHHHHHHHHHhcCC--CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994          316 -ALMKLGEHEEAEKVLKEWELSGN--SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK  392 (496)
Q Consensus       316 -~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~  392 (496)
                       .+...|+++.|...+........  ......+......+...++.+.+...+..............+..+...+...++
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence             56666677777776666644211  011222223333345566777777777776664322134556666667777777


Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994          393 TERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       393 ~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                      .+.|...+..+..       ..|+ ...+..+...+...|..+.+...+......
T Consensus       218 ~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         218 YEEALEYYEKALE-------LDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             HHHHHHHHHHHHh-------hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7777777777765       3333 333344444444555677777766665554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.78  E-value=0.66  Score=46.00  Aligned_cols=182  Identities=15%  Similarity=0.180  Sum_probs=124.6

Q ss_pred             CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 010994           96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT--YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM  173 (496)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~  173 (496)
                      +.+-.....+..+.+...++.|+.+-+.-... ++  ........+.+.+.|++++|...|-+-... +.|.     .+|
T Consensus       332 L~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi  404 (933)
T KOG2114|consen  332 LIEKDLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVI  404 (933)
T ss_pred             eeeccHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHH
Confidence            34555666788899999999999887654432 22  344555667778899999999988765543 2222     345


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh
Q 010994          174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLI  253 (496)
Q Consensus       174 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  253 (496)
                      .-|........-..+++.+.+.|+. +...-+.|+.+|.+.++.+.-.++.+... +.....|..+   .+..+.+.+-.
T Consensus       405 ~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~---al~Ilr~snyl  479 (933)
T KOG2114|consen  405 KKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVET---ALEILRKSNYL  479 (933)
T ss_pred             HHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHH---HHHHHHHhChH
Confidence            5566666666677788889988875 44556789999999999999888887775 3333345554   77778888888


Q ss_pred             HHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHH
Q 010994          254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDL  297 (496)
Q Consensus       254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  297 (496)
                      ++|..+-.....     +......+   +-..+++++|++++..
T Consensus       480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~s  515 (933)
T KOG2114|consen  480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISS  515 (933)
T ss_pred             HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhc
Confidence            888777665322     22333333   3456778888887763

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.68  E-value=3.6  Score=38.06  Aligned_cols=129  Identities=11%  Similarity=0.167  Sum_probs=56.7

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchH-HHHHH
Q 010994          203 SYRICINSYGARSDLEGMEIILREMESQPH-IVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGY-NFLIS  280 (496)
Q Consensus       203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~l~~  280 (496)
                      +|...++.-.+..-++.|..+|-++. +.+ +.+++..+++++..++ .|+..-|.++|+--...  -||...| +-.+.
T Consensus       399 v~C~~~N~v~r~~Gl~aaR~~F~k~r-k~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         399 VFCVHLNYVLRKRGLEAARKLFIKLR-KEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHh-ccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            34444454445555555555555555 333 3344445555554443 34444555555442221  1232222 22334


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcCC-CCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          281 LYASLGNKSEVLRLWDLEKTACKR-YINRDYITMLEALMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       281 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (496)
                      .+...++-+.|..+|+.....-.. .-...|..+|..=++-|++..+..+-+.+..
T Consensus       475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e  530 (660)
T COG5107         475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE  530 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence            444455555555555533222110 1123444455544555555555444444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.67  E-value=3  Score=39.18  Aligned_cols=57  Identities=7%  Similarity=-0.015  Sum_probs=24.7

Q ss_pred             HHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          207 CINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       207 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      +..++-+.|+.++|.+.+++|.++.....+......|+.++...+.+.++..++.+.
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            334444445555555555544411111112233344455555555555555555444

The molecular function of this protein is uncertain.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.59  E-value=1.5  Score=33.79  Aligned_cols=55  Identities=20%  Similarity=0.195  Sum_probs=25.1

Q ss_pred             HhcCCHHHHHHHHHHHHhhcCC--CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010994          283 ASLGNKSEVLRLWDLEKTACKR--YINRDYITMLEALMKLGEHEEAEKVLKEWELSG  337 (496)
Q Consensus       283 ~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (496)
                      .+.|++++|.+.|+.+....+.  -.......++.+|.+.+++++|...+++.++..
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            3445555555555544443331  111233344455555555555555555555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.54  E-value=0.14  Score=30.24  Aligned_cols=38  Identities=21%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAV  382 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~  382 (496)
                      ++..+...|.+.|++++|.++|+++++..+. |...+..
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~   40 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRA   40 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHH
Confidence            3445556666666666666666666665433 4444433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.38  E-value=2.8  Score=35.59  Aligned_cols=221  Identities=15%  Similarity=0.091  Sum_probs=155.0

Q ss_pred             cCChHHHHHHHHHHHHhccc-CccchHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCCHHHHH
Q 010994          250 ANLIDKASDVLKKAEERLEQ-KDGIGYNFLISLYASLGNKSEVLRLWDLEKTA-CKRYINRDYITMLEALMKLGEHEEAE  327 (496)
Q Consensus       250 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~  327 (496)
                      .+....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            34555566666655443321 13567777888888999999999988866553 23345566777778888888999999


Q ss_pred             HHHHHHHhcCCCCCcccHHHHHH-HHHhcCchhHHHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          328 KVLKEWELSGNSYDTRIPNAVII-GYCNNGLVQNAEAILEDLVEKGK--ATTPNSWAVVAAGYFDAGKTERGFQCMKAAL  404 (496)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  404 (496)
                      ..+.........+ ......... .+...|+++.|...+.+......  ......+......+...++.+.+...+.++.
T Consensus       116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  194 (291)
T COG0457         116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL  194 (291)
T ss_pred             HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence            9999988764333 222333333 68899999999999999866332  1234445555555778899999999999998


Q ss_pred             HhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994          405 SVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA  477 (496)
Q Consensus       405 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~  477 (496)
                      .      .... ....+..+...+...++++.|...+.......+.....+..+...+...+  +.+...+.+...
T Consensus       195 ~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         195 K------LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             h------hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7      3333 36778888888999999999999999888765554556666666666445  566666666554

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.36  E-value=3.3  Score=36.69  Aligned_cols=151  Identities=12%  Similarity=0.016  Sum_probs=97.1

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChh--hHH--HHHHHHhhcCChH
Q 010994          143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNF--SYR--ICINSYGARSDLE  218 (496)
Q Consensus       143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~--~li~~~~~~~~~~  218 (496)
                      -.|++.+|...|+++.+. .+.|..+++..=.+|...|+...-...+++.... ..||..  +|.  ...-++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence            457788888888888775 5558888888888888888888888888777654 233332  232  2333455678888


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh---cccCccchHHHHHHHHHhcCCHHHHHHHH
Q 010994          219 GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER---LEQKDGIGYNFLISLYASLGNKSEVLRLW  295 (496)
Q Consensus       219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  295 (496)
                      +|++.-++.. +.+. .|.-.-.++...+-..|+..++.++..+-.+.   +.-.-..-|-...-.+...+.++.|+++|
T Consensus       193 dAEk~A~ral-qiN~-~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  193 DAEKQADRAL-QINR-FDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hHHHHHHhhc-cCCC-cchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            8888887776 5554 45555556777777788888888776653221   00001112223333455668888888888


Q ss_pred             HH
Q 010994          296 DL  297 (496)
Q Consensus       296 ~~  297 (496)
                      +.
T Consensus       271 D~  272 (491)
T KOG2610|consen  271 DR  272 (491)
T ss_pred             HH
Confidence            74

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=94.30  E-value=0.81  Score=32.46  Aligned_cols=76  Identities=11%  Similarity=0.217  Sum_probs=48.2

Q ss_pred             HHHHHHHHHhcCChH--HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994          380 WAVVAAGYFDAGKTE--RGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF  457 (496)
Q Consensus       380 ~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  457 (496)
                      |..--..|....+.+  +..+-+..+..     ..+-|++.+..+.+.+|.+.+++..|.++|+.++.........|..+
T Consensus        11 F~ary~~~F~~~~iD~we~rrglN~l~~-----~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~   85 (108)
T PF02284_consen   11 FDARYEKYFNRPDIDGWELRRGLNNLFG-----YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYI   85 (108)
T ss_dssp             HHHHHHHHHH-TT--HHHHHHHHHHHTT-----SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHH
T ss_pred             HHHHHHHHhCCccccHHHHHHHHHHHhc-----cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHH
Confidence            333334444444333  44555555554     67889999999999999999999999999998888765555578777


Q ss_pred             HHH
Q 010994          458 IKA  460 (496)
Q Consensus       458 ~~~  460 (496)
                      ++-
T Consensus        86 lqE   88 (108)
T PF02284_consen   86 LQE   88 (108)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=94.18  E-value=0.9  Score=36.98  Aligned_cols=97  Identities=9%  Similarity=0.126  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994          132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS--TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN  209 (496)
Q Consensus       132 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  209 (496)
                      ..+..+.+.|.+.|+.++|++.|.++.+....+.  ...+-.+|+.....+++..+.....+....-..+.......-+.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            4577888899999999999999999887644433  34567788888888888888888877765422222222222122


Q ss_pred             -----HHhhcCChHHHHHHHHHhh
Q 010994          210 -----SYGARSDLEGMEIILREME  228 (496)
Q Consensus       210 -----~~~~~~~~~~a~~~~~~~~  228 (496)
                           .+...+++..|-+.|-...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence                 2334677877777776665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=94.07  E-value=1.4  Score=30.94  Aligned_cols=64  Identities=13%  Similarity=0.173  Sum_probs=49.1

Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          392 KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       392 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                      +.-++.+-++.+..     ..+-|++.+..+-+++|.+.+++..|.++|+.++.....+...|..+++-
T Consensus        22 D~we~rr~mN~l~~-----~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lqe   85 (103)
T cd00923          22 DGWELRRGLNNLFG-----YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQE   85 (103)
T ss_pred             cHHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHHH
Confidence            34455666666665     67889999999999999999999999999998886655556677766643

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.96  E-value=2.6  Score=33.50  Aligned_cols=121  Identities=9%  Similarity=-0.004  Sum_probs=54.5

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHHHHHhcccCccc-hHHH--HHHHHHhcCC
Q 010994          213 ARSDLEGMEIILREMESQPHIVLDWSTY--ASAAHFYIKANLIDKASDVLKKAEERLEQKDGI-GYNF--LISLYASLGN  287 (496)
Q Consensus       213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~--l~~~~~~~~~  287 (496)
                      +.+..++|+.-|..+. +.|.. +....  -.........|+...|...|+++-.....|... -...  -...+..+|.
T Consensus        70 ~~~k~d~Alaaf~~le-ktg~g-~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          70 QENKTDDALAAFTDLE-KTGYG-SYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HcCCchHHHHHHHHHH-hcCCC-cchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            4455555555565555 33331 11111  112233445566666666666654433333222 1111  1122345566


Q ss_pred             HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          288 KSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       288 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (496)
                      ++....-.+-+...+...-...-..|.-+..+.|++..|...|..+..
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            665555554332222222222334455555566666666666666654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.93  E-value=6.4  Score=37.95  Aligned_cols=328  Identities=11%  Similarity=0.057  Sum_probs=162.6

Q ss_pred             hhcCHHHHHHHHHhchhcCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH-hcCCCCcHHH
Q 010994          110 RVHGFLSAESYFSNLKDDEKTY-QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYS-KTGQYEKVPD  187 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~~~~~~a~~  187 (496)
                      ...+.+.+...++.+....|.. .-|......=.+.|..+.+.++|++-... ++.+...|......+. ..|+.+...+
T Consensus        57 ~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~  135 (577)
T KOG1258|consen   57 SIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRD  135 (577)
T ss_pred             chhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence            3334455666666666656653 34556666666677777777777776553 5556666655554443 3345556666


Q ss_pred             HHHHHHHC-CCC-CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh---c------CChHHH
Q 010994          188 VLTEMKAK-NIF-PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK---A------NLIDKA  256 (496)
Q Consensus       188 ~~~~m~~~-~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~------~~~~~a  256 (496)
                      .|+..+.. |.. -....|...|.--..++++.....+++++. +.   | ...|+..-.-|.+   .      ...+++
T Consensus       136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil-ei---P-~~~~~~~f~~f~~~l~~~~~~~l~~~d~~  210 (577)
T KOG1258|consen  136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL-EI---P-LHQLNRHFDRFKQLLNQNEEKILLSIDEL  210 (577)
T ss_pred             HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH-hh---h-hhHhHHHHHHHHHHHhcCChhhhcCHHHH
Confidence            66666654 221 123345556665566666777777777666 21   1 1112222211111   1      111111


Q ss_pred             HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc---hhHHHHHHHH-------HhcCCHHHH
Q 010994          257 SDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN---RDYITMLEAL-------MKLGEHEEA  326 (496)
Q Consensus       257 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~-------~~~~~~~~a  326 (496)
                      .++-......             ..-...+...+-.+.+  +... ..|..   ...+.+-..+       .........
T Consensus       211 ~~l~~~~~~~-------------~~~~~~~~~~e~~~~~--v~~~-~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k  274 (577)
T KOG1258|consen  211 IQLRSDVAER-------------SKITHSQEPLEELEIG--VKDS-TDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK  274 (577)
T ss_pred             HHHhhhHHhh-------------hhcccccChhHHHHHH--Hhhc-cCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence            1111111100             0000001111111111  1111 11111   1111111111       111222222


Q ss_pred             HHHHHHHHhcC---C----CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994          327 EKVLKEWELSG---N----SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC  399 (496)
Q Consensus       327 ~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  399 (496)
                      ...++.-.+..   +    .++..+|...+.--.+.|+.+.+.-+|++..-. +..-...|--.+.-....|+.+-|-.+
T Consensus       275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~  353 (577)
T KOG1258|consen  275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNV  353 (577)
T ss_pred             HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHH
Confidence            23333333221   1    223456777888888899999999999987653 222334566666666677999999888


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          400 MKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       400 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      +....+..   ..-.|....+.+.+  +-..|++..|..+++.+.+..|--...-..-+....+.|
T Consensus       354 ~~~~~~i~---~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~  414 (577)
T KOG1258|consen  354 LARACKIH---VKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKG  414 (577)
T ss_pred             HHhhhhhc---CCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhc
Confidence            88877621   12233334443333  345689999999999998877333333333344455555

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.89  E-value=0.78  Score=37.34  Aligned_cols=18  Identities=11%  Similarity=0.100  Sum_probs=11.1

Q ss_pred             HhcCChHHHHHHHHHHHH
Q 010994          388 FDAGKTERGFQCMKAALS  405 (496)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~  405 (496)
                      ...+++..|.+.|-+...
T Consensus       124 l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  124 LAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHhchHHHHHHHHHccCc
Confidence            345667777666666554

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.88  E-value=2.5  Score=33.22  Aligned_cols=20  Identities=25%  Similarity=0.337  Sum_probs=9.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 010994          141 YVRQRQTDKALSHFRKMKEM  160 (496)
Q Consensus       141 ~~~~g~~~~A~~~~~~m~~~  160 (496)
                      +.+.|++.+|..+|+++.+.
T Consensus        54 ~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   54 HIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHHhCCHHHHHHHHHHHhcc
Confidence            34445555555555554443

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.82  E-value=7.8  Score=38.63  Aligned_cols=103  Identities=11%  Similarity=0.091  Sum_probs=74.4

Q ss_pred             hhhHHHhhcCHHHHHHHHHhchhcCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 010994          104 QLDLIGRVHGFLSAESYFSNLKDDEK---TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG  180 (496)
Q Consensus       104 ~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~  180 (496)
                      -++-+.+.+.+++|+...+......|   -..++..+|+.+.-.|++++|-...-.|...    +..-|...+..+...+
T Consensus       362 hi~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~  437 (846)
T KOG2066|consen  362 HIDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELD  437 (846)
T ss_pred             hHHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcccc
Confidence            35677788889999998887776655   3567889999999999999999999888876    7788888888887777


Q ss_pred             CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh
Q 010994          181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA  213 (496)
Q Consensus       181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  213 (496)
                      +......+   +.......+...|..++..+..
T Consensus       438 ~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  438 QLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             ccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence            66443322   2222222345567777766665

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.78  E-value=1.7  Score=41.56  Aligned_cols=98  Identities=10%  Similarity=0.121  Sum_probs=43.6

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHH
Q 010994          143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI  222 (496)
Q Consensus       143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~  222 (496)
                      +.|+.+.|.++..+..      +..-|..|.++....+++..|.+.|.+...         |..|+-.+...|+-+....
T Consensus       649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            3455555554443321      333455555555555555555555544332         3334444444454444333


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994          223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK  262 (496)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  262 (496)
                      +-.... ..|.      .|....+|...|+++++.+++..
T Consensus       714 la~~~~-~~g~------~N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  714 LASLAK-KQGK------NNLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHH-hhcc------cchHHHHHHHcCCHHHHHHHHHh
Confidence            333333 2222      11122344455555555555543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.73  E-value=0.0027  Score=49.89  Aligned_cols=84  Identities=12%  Similarity=0.203  Sum_probs=42.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC
Q 010994          137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSD  216 (496)
Q Consensus       137 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~  216 (496)
                      +|..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++..       +..-...+++.|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            34455555666666666666665544445666666666666665555555555411       11222334444555555


Q ss_pred             hHHHHHHHHHh
Q 010994          217 LEGMEIILREM  227 (496)
Q Consensus       217 ~~~a~~~~~~~  227 (496)
                      ++++.-++.++
T Consensus        86 ~~~a~~Ly~~~   96 (143)
T PF00637_consen   86 YEEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHc
Confidence            55555544444

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.71  E-value=0.18  Score=28.23  Aligned_cols=27  Identities=19%  Similarity=0.284  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          379 SWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +|..|...|.+.|++++|+++|++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            356677777777777777777777543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.69  E-value=0.071  Score=29.43  Aligned_cols=30  Identities=20%  Similarity=0.334  Sum_probs=22.0

Q ss_pred             HhchhcCC-CHHHHHHHHHHHHhcCCHHHHH
Q 010994          122 SNLKDDEK-TYQTYGALLNCYVRQRQTDKAL  151 (496)
Q Consensus       122 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~  151 (496)
                      ++..+.+| |..+|+.+...|...|++++|+
T Consensus         3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    3 KKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34444466 5888888888888888888875

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=93.68  E-value=7.1  Score=37.66  Aligned_cols=387  Identities=12%  Similarity=0.116  Sum_probs=223.1

Q ss_pred             CCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhh---hhHHHhhcCHHHHHHHHHhchhcCC-CHHHH
Q 010994           59 KVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQ---LDLIGRVHGFLSAESYFSNLKDDEK-TYQTY  134 (496)
Q Consensus        59 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~  134 (496)
                      ..+...|..||.--......+.+..++..+....     |-.+.+.   ...=.+.|..+.+.++|++....-| +...|
T Consensus        42 ~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-----Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW  116 (577)
T KOG1258|consen   42 SLDFDAWTTLIQENDSIEDVDALREVYDIFLSKY-----PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLW  116 (577)
T ss_pred             hhcccchHHHHhccCchhHHHHHHHHHHHHHhhC-----ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHH
Confidence            3445566777766666666677778888887765     4444443   4444578888999999998777655 56666


Q ss_pred             HHHHHH-HHhcCCHHHHHHHHHHHHHC-CCC-CChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010994          135 GALLNC-YVRQRQTDKALSHFRKMKEM-GIA-LSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSY  211 (496)
Q Consensus       135 ~~li~~-~~~~g~~~~A~~~~~~m~~~-g~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  211 (496)
                      ...... ....|+.+...+.|+..+.. |.. -+...|...|..-...+++.....+|++.++...    ..|+....-|
T Consensus       117 ~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~----~~~~~~f~~f  192 (577)
T KOG1258|consen  117 LSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPL----HQLNRHFDRF  192 (577)
T ss_pred             HHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhh----hHhHHHHHHH
Confidence            555443 33567888888888887654 211 1455677888877788888899999988876421    1222222211


Q ss_pred             h---hc------CChHHHHHHHHHhhc-------------------CCCCCCC--HHHHHHHH-------HHHHhcCChH
Q 010994          212 G---AR------SDLEGMEIILREMES-------------------QPHIVLD--WSTYASAA-------HFYIKANLID  254 (496)
Q Consensus       212 ~---~~------~~~~~a~~~~~~~~~-------------------~~~~~~~--~~~~~~li-------~~~~~~~~~~  254 (496)
                      .   +.      ...+.+.++-.....                   ..+-+.+  ....+.+-       ..+.......
T Consensus       193 ~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~  272 (577)
T KOG1258|consen  193 KQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEE  272 (577)
T ss_pred             HHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHH
Confidence            1   11      122222222211110                   0000000  00011111       1111122222


Q ss_pred             HHHHHHHHHHHh---cc----cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 010994          255 KASDVLKKAEER---LE----QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAE  327 (496)
Q Consensus       255 ~a~~~~~~m~~~---~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  327 (496)
                      .....|+.-...   .+    .++..+|..-+..-...|+.+.+.-+|+.....+..-+ ..|-..+.-....|+.+.|.
T Consensus       273 ~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~-efWiky~~~m~~~~~~~~~~  351 (577)
T KOG1258|consen  273 EKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYD-EFWIKYARWMESSGDVSLAN  351 (577)
T ss_pred             HHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhH-HHHHHHHHHHHHcCchhHHH
Confidence            222223322111   11    12446788888888899999999999987766554222 33444444444559999998


Q ss_pred             HHHHHHHhcCCCCCcccHHHHHHHH-HhcCchhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHHhcCChHHHH---HHHHH
Q 010994          328 KVLKEWELSGNSYDTRIPNAVIIGY-CNNGLVQNAEAILEDLVEKGKATTPN-SWAVVAAGYFDAGKTERGF---QCMKA  402 (496)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~---~~~~~  402 (496)
                      .++....+--.+ +......+-..+ -..|+++.|..+++.+.+.-  |+.. .-..-+....+.|+.+.+.   +++..
T Consensus       352 ~~~~~~~~i~~k-~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~  428 (577)
T KOG1258|consen  352 NVLARACKIHVK-KTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSS  428 (577)
T ss_pred             HHHHhhhhhcCC-CCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHH
Confidence            888777655332 322222222222 34689999999999998763  4433 2233344556777877777   44444


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHH-----HHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          403 ALSVYVEGKGWKPDPKVITSILS-----KLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       403 ~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      ...      | +-+..+...+.-     .+.-.++.+.|..++..+.+..|++...|..+++-....+
T Consensus       429 ~~~------~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  429 IYE------G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             hcc------c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            433      2 122222222221     2334588999999999999999999999999998887766

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.45  E-value=3.1  Score=32.77  Aligned_cols=113  Identities=11%  Similarity=-0.074  Sum_probs=69.0

Q ss_pred             HHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHH
Q 010994           69 IRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTD  148 (496)
Q Consensus        69 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  148 (496)
                      +..-.+.++.+++..++..+..-.  |..+..-..-...+...|++.+|..+|+.+.+..|....-.+|+..|....+-.
T Consensus        17 ~~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   17 LSVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            334456789999999999998865  234455555567888999999999999999887775555555665555443322


Q ss_pred             HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHH
Q 010994          149 KALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVP  186 (496)
Q Consensus       149 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~  186 (496)
                      .=...-+++.+.+-.|+..   .+++.+....+...|.
T Consensus        95 ~Wr~~A~evle~~~d~~a~---~Lv~~Ll~~~~~~~a~  129 (160)
T PF09613_consen   95 SWRRYADEVLESGADPDAR---ALVRALLARADLEPAH  129 (160)
T ss_pred             HHHHHHHHHHhcCCChHHH---HHHHHHHHhccccchh
Confidence            2223334455554333322   3344444444444333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.44  E-value=4.1  Score=36.11  Aligned_cols=156  Identities=12%  Similarity=0.025  Sum_probs=107.7

Q ss_pred             hHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHH----HHHHHHHHhcC
Q 010994          106 DLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTY----NDIMCLYSKTG  180 (496)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~~  180 (496)
                      ...-..|+..+|-...+++....| |...++-.=+++.-.|+.+.-...++++... ..||...|    ....-++...|
T Consensus       111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g  189 (491)
T KOG2610|consen  111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECG  189 (491)
T ss_pred             HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhc
Confidence            334456778888878888887777 6777888888999999999999999988755 23344333    33344556889


Q ss_pred             CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHhcCChHHHHH
Q 010994          181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIV--LDWSTYASAAHFYIKANLIDKASD  258 (496)
Q Consensus       181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~  258 (496)
                      -+++|.+.-++..+-+ +-|...-.++...+--.|++.++.++..+-...-...  .-...|=...-.+...+.++.|++
T Consensus       190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~ale  268 (491)
T KOG2610|consen  190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALE  268 (491)
T ss_pred             cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHH
Confidence            9999999888877643 3356666777888888999999999887765111100  001112223345667799999999


Q ss_pred             HHHHH
Q 010994          259 VLKKA  263 (496)
Q Consensus       259 ~~~~m  263 (496)
                      +|+.=
T Consensus       269 IyD~e  273 (491)
T KOG2610|consen  269 IYDRE  273 (491)
T ss_pred             HHHHH
Confidence            99853

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.40  E-value=7.2  Score=36.86  Aligned_cols=60  Identities=17%  Similarity=0.137  Sum_probs=38.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNS-YDTRIPNAVIIGYCNNGLVQNAEAILEDLVE  370 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (496)
                      ..+..++.+.|+.++|.+.+.++.+.... .+..+...|+..+...+.+.++..++.+-.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            34555666777777777777777654322 1233556677777777777777777776543

The molecular function of this protein is uncertain.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.31  E-value=3.4  Score=36.84  Aligned_cols=58  Identities=16%  Similarity=0.082  Sum_probs=33.1

Q ss_pred             cHHHHHHHHHcCCCCChhhHHHHHHHHHh--c----cChhHHHHHHHHHHhCCCCCCCcchhhh
Q 010994           46 IEPELDNWVKNGNKVRVGELQRIIRDLRK--R----KRFSQALEVSDWMNRKGICVFAPCDHAV  103 (496)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~  103 (496)
                      +..+.+.+.+.|..-+..+|-+....+..  .    ....+|.++|+.|++.+++--+++.+..
T Consensus        81 ~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~  144 (297)
T PF13170_consen   81 VLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPF  144 (297)
T ss_pred             HHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhH
Confidence            33345666666777777666553333332  1    2346788888888887754333433333

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.21  E-value=6.9  Score=36.12  Aligned_cols=70  Identities=14%  Similarity=0.046  Sum_probs=49.3

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994          305 YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY---DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA  374 (496)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (496)
                      ....++..+...+.+.|.++.|...+..+.+.+...   .+.+.-.-.+.+-..|+.++|+..++...+....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~  216 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS  216 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence            344667788888888999999988888887654222   3344444566667788888888888888774444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.18  E-value=0.25  Score=27.06  Aligned_cols=28  Identities=21%  Similarity=0.464  Sum_probs=20.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          378 NSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+|..+...|...|++++|+..|+++++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            4567777788888888888888888776

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=92.89  E-value=8.4  Score=36.21  Aligned_cols=159  Identities=13%  Similarity=0.121  Sum_probs=105.0

Q ss_pred             chH--HHHHHHHHhc-----CCHHHHHHHHHHHHhhcC-CCC-chhHHHHHHHHHh---------cCCHHHHHHHHHHHH
Q 010994          273 IGY--NFLISLYASL-----GNKSEVLRLWDLEKTACK-RYI-NRDYITMLEALMK---------LGEHEEAEKVLKEWE  334 (496)
Q Consensus       273 ~~~--~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~  334 (496)
                      ..|  ...+.+....     ...+.|+.+|.+...... .|+ ...|..+..++..         ..+..+|.+.-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            456  5566655442     245678888887773322 222 3445444443322         234566777777777


Q ss_pred             hcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC
Q 010994          335 LSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK  414 (496)
Q Consensus       335 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  414 (496)
                      +.+ ..|......+..++.-.++++.|..+|++....++. ...+|......+.-.|+.++|.+.++++++       ..
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr-------Ls  402 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ-------LE  402 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc-------cC
Confidence            775 346777777777777888899999999999987654 556777777778889999999999999876       56


Q ss_pred             CCHH---HHHHHHHHHhccCCHHHHHHHHH
Q 010994          415 PDPK---VITSILSKLGDEGSVQDVEAFVA  441 (496)
Q Consensus       415 p~~~---~~~~l~~~~~~~g~~~~a~~~~~  441 (496)
                      |...   .....+..|+. ..++.|.+++-
T Consensus       403 P~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  431 (458)
T PRK11906        403 PRRRKAVVIKECVDMYVP-NPLKNNIKLYY  431 (458)
T ss_pred             chhhHHHHHHHHHHHHcC-CchhhhHHHHh
Confidence            6543   33333445554 45677777654

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.86  E-value=4.1  Score=32.54  Aligned_cols=23  Identities=13%  Similarity=0.225  Sum_probs=10.3

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCh
Q 010994          231 PHIVLDWSTYASAAHFYIKANLI  253 (496)
Q Consensus       231 ~~~~~~~~~~~~li~~~~~~~~~  253 (496)
                      .+++|+...|..++..+.+.|++
T Consensus        23 ~~i~~~~~L~~lli~lLi~~~~~   45 (167)
T PF07035_consen   23 HNIPVQHELYELLIDLLIRNGQF   45 (167)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCH
Confidence            33444444444444444444443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.54  E-value=16  Score=38.56  Aligned_cols=86  Identities=9%  Similarity=0.037  Sum_probs=50.0

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL  424 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~  424 (496)
                      |.+....+.+.+.+++|--.|+..-+.         .--+.+|..+|+|.+|+.+..++..      +-.--..+-..|+
T Consensus       942 ~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~------~~de~~~~a~~L~ 1006 (1265)
T KOG1920|consen  942 YEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE------GKDELVILAEELV 1006 (1265)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC------CHHHHHHHHHHHH
Confidence            344444455567777776666554331         2345677777888888777766532      1111111225666


Q ss_pred             HHHhccCCHHHHHHHHHHHHh
Q 010994          425 SKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       425 ~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      .-+...++.-+|-++..+..+
T Consensus      1007 s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1007 SRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHcccchhHHHHHHHHhc
Confidence            677777777777777665543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.38  E-value=0.38  Score=26.86  Aligned_cols=25  Identities=20%  Similarity=0.307  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994          133 TYGALLNCYVRQRQTDKALSHFRKM  157 (496)
Q Consensus       133 ~~~~li~~~~~~g~~~~A~~~~~~m  157 (496)
                      +|+.|...|.+.|++++|+++|++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3566777777777777777777764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=92.29  E-value=0.26  Score=27.18  Aligned_cols=32  Identities=16%  Similarity=0.324  Sum_probs=21.9

Q ss_pred             HHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994          365 LEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       365 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      |++.++.++. |...|+.+...|...|++++|+
T Consensus         2 y~kAie~~P~-n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPN-NAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCC-CHHHHHHHHHHHHHCcCHHhhc
Confidence            4455555544 6777777777888888777764

>PRK09687 putative lyase; Provisional

Probab=92.28  E-value=7.8  Score=34.38  Aligned_cols=135  Identities=15%  Similarity=0.104  Sum_probs=66.9

Q ss_pred             CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 010994          341 DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-KTERGFQCMKAALSVYVEGKGWKPDPKV  419 (496)
Q Consensus       341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~  419 (496)
                      +..+-...+.++.+.++ +.+...+-.+.+.   +|...-...+.++.+.+ +...+...+..++.        .++..+
T Consensus       141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~--------D~~~~V  208 (280)
T PRK09687        141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ--------DKNEEI  208 (280)
T ss_pred             CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc--------CCChHH
Confidence            33444445555555554 3444444444432   23333333444444432 13345555555543        345555


Q ss_pred             HHHHHHHHhccCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHHHhCCCCCChhHHHHHHhhhc
Q 010994          420 ITSILSKLGDEGSVQDVEA-FVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDSMKADGIDEDEETKEILVCTME  495 (496)
Q Consensus       420 ~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~  495 (496)
                      -...+.++.+.|+.. |.. +.+.+..   ++  .....+.++...| .+|...+.++.+.  .||...-...+.+|.
T Consensus       209 R~~A~~aLg~~~~~~-av~~Li~~L~~---~~--~~~~a~~ALg~ig~~~a~p~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        209 RIEAIIGLALRKDKR-VLSVLIKELKK---GT--VGDLIIEAAGELGDKTLLPVLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHHHHHccCChh-HHHHHHHHHcC---Cc--hHHHHHHHHHhcCCHhHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence            666666666666633 333 3333332   22  2235566666666 5667666666652  246666555555543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=91.72  E-value=2.4  Score=34.73  Aligned_cols=84  Identities=17%  Similarity=0.107  Sum_probs=54.4

Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD  429 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  429 (496)
                      -.+.+.|+ +.|.+.|-.+...+..-++.....+...|. ..+.+++.+++.++++..  +.+-.+|+..+.+|...+.+
T Consensus       115 y~Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~--~~~~~~n~eil~sLas~~~~  190 (203)
T PF11207_consen  115 YHWSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELS--NPDDNFNPEILKSLASIYQK  190 (203)
T ss_pred             HHhhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHH
Confidence            33445554 456666666666655545555555554444 567788888888887732  33446778888888888888


Q ss_pred             cCCHHHHH
Q 010994          430 EGSVQDVE  437 (496)
Q Consensus       430 ~g~~~~a~  437 (496)
                      .|+++.|.
T Consensus       191 ~~~~e~AY  198 (203)
T PF11207_consen  191 LKNYEQAY  198 (203)
T ss_pred             hcchhhhh
Confidence            88877764

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=91.51  E-value=14  Score=37.14  Aligned_cols=86  Identities=17%  Similarity=0.123  Sum_probs=36.7

Q ss_pred             HHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc-cCccchHHHHHHHHHh--
Q 010994          208 INSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-QKDGIGYNFLISLYAS--  284 (496)
Q Consensus       208 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~--  284 (496)
                      ...+.-.|+++.|.+++-...   ....+..++...+..|.-.+-.+...   ..+..... .|...-+..||..|.+  
T Consensus       265 f~~LlLtgqFE~AI~~L~~~~---~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F  338 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYRNE---FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF  338 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred             HHHHHHHhhHHHHHHHHHhhc---cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence            344556788888888876621   22255555444333332211111111   22211110 1112557778888876  


Q ss_pred             -cCCHHHHHHHHHHHH
Q 010994          285 -LGNKSEVLRLWDLEK  299 (496)
Q Consensus       285 -~~~~~~a~~~~~~~~  299 (496)
                       ..+..+|.++|-.+.
T Consensus       339 ~~td~~~Al~Y~~li~  354 (613)
T PF04097_consen  339 EITDPREALQYLYLIC  354 (613)
T ss_dssp             TTT-HHHHHHHHHGGG
T ss_pred             hccCHHHHHHHHHHHH
Confidence             457788888887443

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.48  E-value=0.54  Score=25.59  Aligned_cols=27  Identities=22%  Similarity=0.598  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          379 SWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .|..+...+...|++++|++.|+++++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            455666667777777777777777665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.23  E-value=6.5  Score=31.41  Aligned_cols=98  Identities=14%  Similarity=0.225  Sum_probs=45.7

Q ss_pred             HHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC
Q 010994          154 FRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHI  233 (496)
Q Consensus       154 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~  233 (496)
                      +..+.+.|++|+...|..+++.+.+.|++    ..+..+.+.++-+|.......+-.+..  ....+.++=-.|....+ 
T Consensus        17 irSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkRL~-   89 (167)
T PF07035_consen   17 IRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKRLG-   89 (167)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHHhh-
Confidence            33444556666666666666666666653    333444455555555444433322221  12222222222221111 


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994          234 VLDWSTYASAAHFYIKANLIDKASDVLKK  262 (496)
Q Consensus       234 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~  262 (496)
                          ..+..++..+...|++-+|.++...
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~  114 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQ  114 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence                1234455555666666666655554

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=90.94  E-value=10  Score=33.17  Aligned_cols=61  Identities=15%  Similarity=0.089  Sum_probs=28.1

Q ss_pred             CCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC-CCCCChhhHHHHHHHHhhcCChHHHHHH
Q 010994          163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK-NIFPDNFSYRICINSYGARSDLEGMEII  223 (496)
Q Consensus       163 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~a~~~  223 (496)
                      .++..+...++..+++.++|.+-.++++..... +..-|...|...|+.....||..-..++
T Consensus       199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~ki  260 (292)
T PF13929_consen  199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKI  260 (292)
T ss_pred             CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHH
Confidence            344444444455555555555444444444333 2333444455555555555554443333

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.69  E-value=9.6  Score=32.36  Aligned_cols=119  Identities=8%  Similarity=0.075  Sum_probs=61.9

Q ss_pred             cCCHHHHHHHHHHHHhcCC-----CCCcccHHHHHHHHHhcCchhHHHHHHHHHHh----cCCCCCH-hHHHHHHHHHHh
Q 010994          320 LGEHEEAEKVLKEWELSGN-----SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE----KGKATTP-NSWAVVAAGYFD  389 (496)
Q Consensus       320 ~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~~-~~~~~l~~~~~~  389 (496)
                      .-+++.|.+++++....-.     ..-...+...-..+.+..++++|-..+.+-..    ..-.|+. ..|...|-.+..
T Consensus       123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~  202 (308)
T KOG1585|consen  123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY  202 (308)
T ss_pred             cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence            3455666666655442200     01122344455556666666666555443321    1111222 246666667777


Q ss_pred             cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994          390 AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA  441 (496)
Q Consensus       390 ~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  441 (496)
                      ..++..|..+++...+  +....-+-+..+...|+.+| ..|+.+++..++.
T Consensus       203 ~~Dyv~aekc~r~~~q--ip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  203 AHDYVQAEKCYRDCSQ--IPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHHHHHhcchhc--CccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence            7777777777777665  11111222445666777666 3467777666654

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.61  E-value=17  Score=35.24  Aligned_cols=151  Identities=13%  Similarity=0.078  Sum_probs=86.9

Q ss_pred             HHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHH
Q 010994          107 LIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVP  186 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~  186 (496)
                      .+.-.|+++.|..++-.++.     ...+.+++.+.+.|-.++|+++-         +|...   -.....+.|+.+.|.
T Consensus       595 t~vmrrd~~~a~~vLp~I~k-----~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~  657 (794)
T KOG0276|consen  595 TLVLRRDLEVADGVLPTIPK-----EIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAF  657 (794)
T ss_pred             HHhhhccccccccccccCch-----hhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHH
Confidence            33445666666665544432     23345666666677666666542         22221   122334567777776


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994          187 DVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER  266 (496)
Q Consensus       187 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  266 (496)
                      ++..+..      +..-|..|.++....|++..|.+.|.... +         |..|+-.+...|+-+....+-....+.
T Consensus       658 ~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~-d---------~~~LlLl~t~~g~~~~l~~la~~~~~~  721 (794)
T KOG0276|consen  658 DLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRAR-D---------LGSLLLLYTSSGNAEGLAVLASLAKKQ  721 (794)
T ss_pred             HHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhc-c---------hhhhhhhhhhcCChhHHHHHHHHHHhh
Confidence            6655432      44567777777777777777777776665 2         333666666677666555555554444


Q ss_pred             cccCccchHHHHHHHHHhcCCHHHHHHHHH
Q 010994          267 LEQKDGIGYNFLISLYASLGNKSEVLRLWD  296 (496)
Q Consensus       267 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  296 (496)
                      |.      .|...-+|...|+++++.+++.
T Consensus       722 g~------~N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  722 GK------NNLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             cc------cchHHHHHHHcCCHHHHHHHHH
Confidence            42      2233345666777777777765

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=90.45  E-value=11  Score=32.83  Aligned_cols=57  Identities=16%  Similarity=0.180  Sum_probs=35.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994          241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLE  298 (496)
Q Consensus       241 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  298 (496)
                      +.....|..+|.+.+|..+.++..+-.+ .+...|-.++..+...|+--.+.+-++.+
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            3344666667777777777766655443 55666666777777777655555555543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.44  E-value=11  Score=33.35  Aligned_cols=95  Identities=12%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSG---NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAA  385 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  385 (496)
                      +...++..-....+++.+...+-+++...   ..|+...+ +.++ ++-.-+.++++.++..=++.|+-||..++..+++
T Consensus        66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D  143 (418)
T KOG4570|consen   66 TVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMD  143 (418)
T ss_pred             ehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchhhHHHHHH
Confidence            33444444444556666666666655331   12222222 2222 2223455566666666666677777777777777


Q ss_pred             HHHhcCChHHHHHHHHHHHH
Q 010994          386 GYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       386 ~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+.+.+++.+|.++.-.++.
T Consensus       144 ~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  144 SFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHhcccHHHHHHHHHHHHH
Confidence            77777777666666665554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.35  E-value=20  Score=35.55  Aligned_cols=120  Identities=16%  Similarity=0.009  Sum_probs=52.0

Q ss_pred             hcCChHHHHHHHHHHHH----hcccCccchHHHHHHHHHhcC-----CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 010994          249 KANLIDKASDVLKKAEE----RLEQKDGIGYNFLISLYASLG-----NKSEVLRLWDLEKTACKRYINRDYITMLEALMK  319 (496)
Q Consensus       249 ~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  319 (496)
                      ...|.+.|+..|+....    .-..-+......+..+|.+..     +.+.|..++......+. |+.......+.-...
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~  339 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGT  339 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCC
Confidence            34556666666665544    000112334444555554432     34456666654444433 333222222211111


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH----hcCchhHHHHHHHHHHhcC
Q 010994          320 -LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC----NNGLVQNAEAILEDLVEKG  372 (496)
Q Consensus       320 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~  372 (496)
                       ..+...|.++|....+.|.. +  .+-.+..+|.    ...+.+.|..++.+..+.|
T Consensus       340 ~~~d~~~A~~yy~~Aa~~G~~-~--A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  340 KERDYRRAFEYYSLAAKAGHI-L--AIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             ccccHHHHHHHHHHHHHcCCh-H--HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence             23455666666666665532 1  1111111111    1234556666666666655

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.20  E-value=9  Score=31.28  Aligned_cols=20  Identities=10%  Similarity=0.023  Sum_probs=9.8

Q ss_pred             HHHhhcCChHHHHHHHHHhh
Q 010994          209 NSYGARSDLEGMEIILREME  228 (496)
Q Consensus       209 ~~~~~~~~~~~a~~~~~~~~  228 (496)
                      +.+...|+-++|..-|++..
T Consensus       167 Dill~kg~k~~Ar~ay~kAl  186 (207)
T COG2976         167 DILLAKGDKQEARAAYEKAL  186 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHH
Confidence            34444555555555554444

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.97  E-value=26  Score=36.31  Aligned_cols=115  Identities=10%  Similarity=0.089  Sum_probs=60.5

Q ss_pred             hhHHHHHHHHHhccChhHHHHHHHHHHhCC--CCCCCcchhhhhhhHHHhhcCH--HHHHHHHHhchhcCCC--HHHHHH
Q 010994           63 GELQRIIRDLRKRKRFSQALEVSDWMNRKG--ICVFAPCDHAVQLDLIGRVHGF--LSAESYFSNLKDDEKT--YQTYGA  136 (496)
Q Consensus        63 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~~~~~~~~--~~~~~~  136 (496)
                      .-|..|+..|...|..++|++++.+..+..  ..+..++.+..+++.+.+.+.-  +..+++-++.....|.  ..++..
T Consensus       505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~  584 (877)
T KOG2063|consen  505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS  584 (877)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence            357788888888888888888888887743  1222333444455555555544  5555555555444331  111111


Q ss_pred             ------------HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 010994          137 ------------LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYS  177 (496)
Q Consensus       137 ------------li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~  177 (496)
                                  .+-.|.+....+-+...++.+....-.++..-.+.++..|+
T Consensus       585 ~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~  637 (877)
T KOG2063|consen  585 EDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYL  637 (877)
T ss_pred             cChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHH
Confidence                        22233444444555555555544433334444455544444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=89.94  E-value=13  Score=32.63  Aligned_cols=62  Identities=10%  Similarity=0.215  Sum_probs=30.3

Q ss_pred             CccchHHHHHHHHHhcCCHHHHHHHHHHHHhh-cCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010994          270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTA-CKRYINRDYITMLEALMKLGEHEEAEKVLK  331 (496)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  331 (496)
                      ++..+...++..++..+++..-.++++..... ++..|...|..+|......|+..-...+.+
T Consensus       200 l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~  262 (292)
T PF13929_consen  200 LTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID  262 (292)
T ss_pred             CChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence            44444455555555555555555555533333 233444555555555555555554444443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.83  E-value=7.9  Score=30.06  Aligned_cols=55  Identities=9%  Similarity=-0.121  Sum_probs=35.2

Q ss_pred             hccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC
Q 010994           74 KRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT  130 (496)
Q Consensus        74 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~  130 (496)
                      ..++++++..+++.|.--.+  -.+..-..-...+...|++++|..+|+.+.+..+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP--~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~   76 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRP--NLKELDMFDGWLLIARGNYDEAARILRELLSSAGA   76 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCC--CccccchhHHHHHHHcCCHHHHHHHHHhhhccCCC
Confidence            46777777777777776542  33334444455666777777777777777766554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.75  E-value=2.8  Score=34.04  Aligned_cols=131  Identities=11%  Similarity=0.082  Sum_probs=73.5

Q ss_pred             hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCC-CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCH----HHHHH
Q 010994           62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICV-FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTY----QTYGA  136 (496)
Q Consensus        62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~~~  136 (496)
                      +..|..++...- .+.+ +.....+.+...+..+ ...-....+...+...++++.|...++.......|.    .+--.
T Consensus        54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lR  131 (207)
T COG2976          54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALR  131 (207)
T ss_pred             HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHH
Confidence            345666666553 3333 4444444444443111 111222223566667777777777777666543332    12234


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCC
Q 010994          137 LLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKN  196 (496)
Q Consensus       137 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~  196 (496)
                      |.......|.+|+|+.+++.....+.  .......-.+++...|+-++|..-|+.....+
T Consensus       132 LArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         132 LARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             HHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            55667777888888888777665532  12223344566777788888888888777764

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=89.43  E-value=24  Score=35.05  Aligned_cols=242  Identities=11%  Similarity=-0.008  Sum_probs=137.0

Q ss_pred             HHHHHHHHHHHHHCCCCCChhHHHHHHHH-----HHhcCCCCcHHHHHHHHHH-------CCCCCChhhHHHHHHHHhhc
Q 010994          147 TDKALSHFRKMKEMGIALSTLTYNDIMCL-----YSKTGQYEKVPDVLTEMKA-------KNIFPDNFSYRICINSYGAR  214 (496)
Q Consensus       147 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-----~~~~~~~~~a~~~~~~m~~-------~~~~p~~~~~~~li~~~~~~  214 (496)
                      ...|.+.++...+.|   +...-..+..+     +....|.+.|+.+|+.+.+       .|   +.....-+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            467888888877765   33333222222     3345688888888888866       44   223455566666653


Q ss_pred             C-----ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHHhcccCccchHHHHHHHHH--h
Q 010994          215 S-----DLEGMEIILREMESQPHIVLDWSTYASAAHFYIK---ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYA--S  284 (496)
Q Consensus       215 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~--~  284 (496)
                      .     +.+.|..++.... ..|. |+....  +..++..   ..+...|.++|....+.|. +...-+..++....  .
T Consensus       302 ~~~~~~d~~~A~~~~~~aA-~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv  376 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAA-ELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGV  376 (552)
T ss_pred             CCCccccHHHHHHHHHHHH-hcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCc
Confidence            2     5677888888887 6665 665553  3333332   2467789999988877665 33333333322222  3


Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-H---Hh----cC
Q 010994          285 LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG-Y---CN----NG  356 (496)
Q Consensus       285 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~---~~----~g  356 (496)
                      ..+.+.|..+++.....+. +...--...+..+.. ++.+.+.-.+..+...|.. ...+-...+.. .   ..    ..
T Consensus       377 ~r~~~~A~~~~k~aA~~g~-~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~  453 (552)
T KOG1550|consen  377 ERNLELAFAYYKKAAEKGN-PSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVIS  453 (552)
T ss_pred             CCCHHHHHHHHHHHHHccC-hhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhcccccccccccc
Confidence            4477888888887777663 332222233333444 6777777666666665533 22211111111 0   11    12


Q ss_pred             chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc----CChHHHHHHHHHHHH
Q 010994          357 LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA----GKTERGFQCMKAALS  405 (496)
Q Consensus       357 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~  405 (496)
                      +.+.+...+.+....|   +......+...|...    .+++.|...|..+..
T Consensus       454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~  503 (552)
T KOG1550|consen  454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASE  503 (552)
T ss_pred             chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHH
Confidence            4556666776666655   455555555555443    347778777777765

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.19  E-value=6.9  Score=32.91  Aligned_cols=21  Identities=14%  Similarity=0.124  Sum_probs=12.6

Q ss_pred             HHhcCCHHHHHHHHHHHHhcC
Q 010994          317 LMKLGEHEEAEKVLKEWELSG  337 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~~  337 (496)
                      .+..+++.+|.++|+++....
T Consensus       164 aa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  164 AAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            345566666666666665543

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=88.84  E-value=5.8  Score=31.89  Aligned_cols=117  Identities=11%  Similarity=0.144  Sum_probs=54.1

Q ss_pred             hhHHHHHHHHHHhcCCCCCHhHHHHHHHHH---HhcCChHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccC--
Q 010994          358 VQNAEAILEDLVEKGKATTPNSWAVVAAGY---FDAGKTERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEG--  431 (496)
Q Consensus       358 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g--  431 (496)
                      ++.|.+..+.-...++. |...++.-..++   ++..+..++.+++++++..+.+-..+.|+. .++..+..++...+  
T Consensus         7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            34455555554444433 444433333333   333333344444444444332223377775 57777777765543  


Q ss_pred             --CHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHhCC
Q 010994          432 --SVQDVEAFVAALRTV------IPMNRQMYHAFIKANIRNGKGVDELLDSMKADG  479 (496)
Q Consensus       432 --~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~g  479 (496)
                        +..+|..+|++....      ..|+...|+.-+....+    |-++..+..+++
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k----ap~lh~e~~~~~  137 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK----APELHMEIHKQG  137 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT----HHHHHHHHHHSS
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh----hHHHHHHHHHHH
Confidence              344455555544331      46777778777766643    455555554443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.69  E-value=3.6  Score=36.10  Aligned_cols=51  Identities=22%  Similarity=0.296  Sum_probs=38.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC
Q 010994          145 RQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK  195 (496)
Q Consensus       145 g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  195 (496)
                      -+.++++.++..=...|+-||..+++.+|+.+.+.+++..|..+...|...
T Consensus       114 y~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  114 YDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             cChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            356677777777777788888888888888888888888777777666654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=88.45  E-value=1.9  Score=38.24  Aligned_cols=52  Identities=23%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             HHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010994          385 AGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAAL  443 (496)
Q Consensus       385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  443 (496)
                      .-|.++|.+++|+.+|.+.+.       ..| |..++..-..+|.+..++..|+.-....
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia-------~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~A  157 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIA-------VYPHNPVYHINRALAYLKQKSFAQAEEDCEAA  157 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhc-------cCCCCccchhhHHHHHHHHHHHHHHHHhHHHH
Confidence            346777777777777777654       445 6666666666777776666666554443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.33  E-value=14  Score=31.12  Aligned_cols=18  Identities=0%  Similarity=0.001  Sum_probs=10.0

Q ss_pred             HhcCChHHHHHHHHHHHH
Q 010994          388 FDAGKTERGFQCMKAALS  405 (496)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~  405 (496)
                      ...+++.+|+.+|++...
T Consensus       165 a~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344555566666665554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.28  E-value=21  Score=32.91  Aligned_cols=65  Identities=14%  Similarity=-0.042  Sum_probs=35.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC---ccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK---DGIGYNFLISLYASLGNKSEVLRLWDLEKT  300 (496)
Q Consensus       236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  300 (496)
                      ...++..++..+-+.|.++.|...+..+.......   ++.....-+...-..|+..+|+..++....
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33455556666666666666666666655433211   223333344555556666666666665444

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=88.21  E-value=4.8  Score=28.40  Aligned_cols=45  Identities=9%  Similarity=0.025  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          360 NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL  404 (496)
Q Consensus       360 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  404 (496)
                      ++.+-++.+...+..|++....+-+.+|-+.+++..|+++++-..
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344445555555556666666666666666666666666665544

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=88.20  E-value=1.4  Score=25.24  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          378 NSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+++.+...|...|++++|..++++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4567777777777777777777777766

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.10  E-value=31  Score=34.72  Aligned_cols=23  Identities=9%  Similarity=0.105  Sum_probs=11.9

Q ss_pred             HHHHHHhccChhHHHHHHHHHHh
Q 010994           68 IIRDLRKRKRFSQALEVSDWMNR   90 (496)
Q Consensus        68 li~~~~~~~~~~~a~~~~~~~~~   90 (496)
                      |+..|...+++..|+.++-...+
T Consensus       511 La~LYl~d~~Y~~Al~~ylklk~  533 (846)
T KOG2066|consen  511 LAHLYLYDNKYEKALPIYLKLQD  533 (846)
T ss_pred             HHHHHHHccChHHHHHHHHhccC
Confidence            55555555555555555444433

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=87.50  E-value=12  Score=29.12  Aligned_cols=86  Identities=15%  Similarity=0.172  Sum_probs=58.4

Q ss_pred             CCCCCCHH--HHHHHHHHHhccCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHhCC---CcHHHHHHHHHhCC
Q 010994          411 KGWKPDPK--VITSILSKLGDEGSVQDVEAFVAALRTV------IPMNRQMYHAFIKANIRNG---KGVDELLDSMKADG  479 (496)
Q Consensus       411 ~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g---~~a~~~~~~m~~~g  479 (496)
                      .+..++..  ..++++.-....++......+++.+...      ...+...|..++.+.++..   --+..+|+-|++.+
T Consensus        31 ~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~  110 (145)
T PF13762_consen   31 ENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKND  110 (145)
T ss_pred             cccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcC
Confidence            44555542  4566776666667777777777766432      1345567888888886665   35667788888878


Q ss_pred             CCCChhHHHHHHhhhcC
Q 010994          480 IDEDEETKEILVCTMEK  496 (496)
Q Consensus       480 ~~p~~~t~~~l~~~~~k  496 (496)
                      .++++.-|..++.++.|
T Consensus       111 ~~~t~~dy~~li~~~l~  127 (145)
T PF13762_consen  111 IEFTPSDYSCLIKAALR  127 (145)
T ss_pred             CCCCHHHHHHHHHHHHc
Confidence            88888888888887754

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=87.37  E-value=17  Score=30.78  Aligned_cols=37  Identities=8%  Similarity=0.165  Sum_probs=17.0

Q ss_pred             CCHHHHHHHHHHHHhCC-CcHHHHHHHHHhCCCCCChh
Q 010994          449 MNRQMYHAFIKANIRNG-KGVDELLDSMKADGIDEDEE  485 (496)
Q Consensus       449 ~~~~~~~~l~~~~~~~g-~~a~~~~~~m~~~g~~p~~~  485 (496)
                      |.+.....++..|.+.. ++|.+++.++-+.|+.|...
T Consensus       237 PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Di  274 (333)
T KOG0991|consen  237 PHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDI  274 (333)
T ss_pred             CChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHH
Confidence            44444444444444444 44444444444444444443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.16  E-value=1.2  Score=24.19  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          379 SWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +|..+...|...|++++|...|+++++
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455666667777777777777777665

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.66  E-value=2.4  Score=22.86  Aligned_cols=31  Identities=6%  Similarity=0.036  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          418 KVITSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                      ..+..+...+...|++++|.+.|++.....|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            3466677788888899999888887766544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=86.64  E-value=29  Score=32.86  Aligned_cols=107  Identities=16%  Similarity=0.204  Sum_probs=68.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHh---cCCCCC-----cccHHHHHHHHHhcCchhHHHHHHHHHHh-------cCCCCCH---
Q 010994          316 ALMKLGEHEEAEKVLKEWEL---SGNSYD-----TRIPNAVIIGYCNNGLVQNAEAILEDLVE-------KGKATTP---  377 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~p~~---  377 (496)
                      .+.-.|++.+|.+++...--   .|...+     -..||.+...+.+.|.+..+..+|.+..+       .|.+|..   
T Consensus       249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t  328 (696)
T KOG2471|consen  249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT  328 (696)
T ss_pred             HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence            34567888888887754321   121111     12345566566667777777666666553       3444321   


Q ss_pred             --------hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994          378 --------NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD  429 (496)
Q Consensus       378 --------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  429 (496)
                              .+|| ....|...|++-.|.++|.++..      -+..++..|..+..+|.-
T Consensus       329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~------vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVH------VFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHH------HHhcCcHHHHHHHHHHHH
Confidence                    2333 34567788999999999999987      456788889999888853

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=86.56  E-value=21  Score=31.10  Aligned_cols=122  Identities=14%  Similarity=0.033  Sum_probs=81.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhc-----ccCccc--------hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhH
Q 010994          244 AHFYIKANLIDKASDVLKKAEERL-----EQKDGI--------GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDY  310 (496)
Q Consensus       244 i~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  310 (496)
                      .+.+.-..|+..|++..++-.+.-     ...+..        ....=|++++..++|.+++...-+.-+...+......
T Consensus        42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl  121 (309)
T PF07163_consen   42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL  121 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence            344455667777777776654321     111111        1233478899999999988766544443334556677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-----cCchhHHHHHH
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN-----NGLVQNAEAIL  365 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~  365 (496)
                      ..-|-.|++.++...+.++-.......-.-+..-|.+++..|..     .|.+++|+++.
T Consensus       122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV  181 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence            77788899999999999999888875333345558877777664     69999998876

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.49  E-value=2.2  Score=24.43  Aligned_cols=27  Identities=22%  Similarity=0.297  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994          132 QTYGALLNCYVRQRQTDKALSHFRKMK  158 (496)
Q Consensus       132 ~~~~~li~~~~~~g~~~~A~~~~~~m~  158 (496)
                      .+++.|...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            456777777777788888877777754

>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]

Probab=86.02  E-value=12  Score=27.92  Aligned_cols=59  Identities=17%  Similarity=0.262  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010994          396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIK  459 (496)
Q Consensus       396 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  459 (496)
                      ..+-+.....     ..+-|++.....-+++|.+.+|+..|.++|+.++...++....|-.+++
T Consensus        68 vrkglN~l~~-----yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g~~k~~Y~y~v~  126 (149)
T KOG4077|consen   68 VRKGLNNLFD-----YDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCGAQKQVYPYYVK  126 (149)
T ss_pred             HHHHHHhhhc-----cccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            3444555554     6789999999999999999999999999999998877666666766654

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=85.78  E-value=6.6  Score=31.60  Aligned_cols=94  Identities=12%  Similarity=0.023  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH---hccCCHHHHHHH-------HHHHHhcCCCCHHHHHHHHHHHHh
Q 010994          394 ERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL---GDEGSVQDVEAF-------VAALRTVIPMNRQMYHAFIKANIR  463 (496)
Q Consensus       394 ~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~g~~~~a~~~-------~~~~~~~~~~~~~~~~~l~~~~~~  463 (496)
                      +.|.+.++....      .-+.|...++.-..++   ++.....++.++       |++.....|....++..++.+|..
T Consensus         8 E~ark~aea~y~------~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts   81 (186)
T PF06552_consen    8 EHARKKAEAAYA------KNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS   81 (186)
T ss_dssp             HHHHHHHHHHHH------H-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH------hCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH
Confidence            445555555443      2233445444444333   333333344444       444444466667899999999988


Q ss_pred             CC-------------CcHHHHHHHHHhCCCCCChhHHHHHHhhhc
Q 010994          464 NG-------------KGVDELLDSMKADGIDEDEETKEILVCTME  495 (496)
Q Consensus       464 ~g-------------~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~  495 (496)
                      .+             +.|.+.|++..+  ..|+..+|+.-+....
T Consensus        82 ~A~l~~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~  124 (186)
T PF06552_consen   82 LAFLTPDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMAA  124 (186)
T ss_dssp             HHHH---HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHH
T ss_pred             HHhhcCChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHH
Confidence            77             245555666555  6799999988766543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.58  E-value=8.3  Score=31.75  Aligned_cols=72  Identities=13%  Similarity=0.050  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC---CCCCChhhHHHHHHHHhhcCChHHH
Q 010994          148 DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK---NIFPDNFSYRICINSYGARSDLEGM  220 (496)
Q Consensus       148 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~~~~~~a  220 (496)
                      ++|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+.   +-.+|+..+.+|+..+.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            445555555554444434444444444443 34455555555544432   1234445555555555555554443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.52  E-value=3.3  Score=22.43  Aligned_cols=26  Identities=19%  Similarity=0.293  Sum_probs=11.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          240 YASAAHFYIKANLIDKASDVLKKAEE  265 (496)
Q Consensus       240 ~~~li~~~~~~~~~~~a~~~~~~m~~  265 (496)
                      |..+..+|...|++++|+..|++..+
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            34444444444444444444444433

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=84.85  E-value=2.1  Score=22.91  Aligned_cols=25  Identities=8%  Similarity=0.038  Sum_probs=13.3

Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcC
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVI  447 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~  447 (496)
                      +..++.+.|++++|.+.|+.+.+..
T Consensus         6 ~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    6 LARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHC
Confidence            3444455555666666555555443

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.80  E-value=54  Score=34.21  Aligned_cols=115  Identities=15%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhcccCc---cchHHHHHHHHHhcCCH--HHHHHHHHHHHhhcCCCCchhHH---
Q 010994          240 YASAAHFYIKANLIDKASDVLKKAEERLEQKD---GIGYNFLISLYASLGNK--SEVLRLWDLEKTACKRYINRDYI---  311 (496)
Q Consensus       240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~---  311 (496)
                      |..|+..|...|+.++|++++.+..+..-..|   ...+..+++-+.+.+..  +-++++-+......+......+.   
T Consensus       507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~  586 (877)
T KOG2063|consen  507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED  586 (877)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence            66788888888888888888887765210011   12233344444444433  44444444333332211111111   


Q ss_pred             ---------HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 010994          312 ---------TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN  354 (496)
Q Consensus       312 ---------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  354 (496)
                               ..+-.|......+.+..+++.+....-.++....+.++..|++
T Consensus       587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence                     1233345566777777888877765545566667777777764

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=84.69  E-value=38  Score=32.39  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=13.8

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEKG  372 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (496)
                      .-+-.-|....++++|++++..+.+.+
T Consensus       209 qdv~~~Ys~~eN~~eai~Ilk~il~~d  235 (711)
T COG1747         209 QDVYKKYSENENWTEAIRILKHILEHD  235 (711)
T ss_pred             HHHHHHhccccCHHHHHHHHHHHhhhc
Confidence            333344555555555555555555443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=84.57  E-value=14  Score=30.37  Aligned_cols=54  Identities=15%  Similarity=0.039  Sum_probs=25.6

Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ++.+.+.++.|+.-..+.++.++. .......-..+|.+...+++|++-|+++++
T Consensus       143 a~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ek~eealeDyKki~E  196 (271)
T KOG4234|consen  143 ALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKMEKYEEALEDYKKILE  196 (271)
T ss_pred             HHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            344445555555555555544322 222222233445555555666665655554

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.52  E-value=10  Score=31.58  Aligned_cols=77  Identities=10%  Similarity=0.022  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC--CCCHhHHHHHHHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK--ATTPNSWAVVAAG  386 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~  386 (496)
                      |....++.+.+.+.+.+++.....-.+.. +.|...-..+++.||-.|++++|..-++-.-+...  .+-..+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            34455666777778888887777766653 23555556777788888888888776666554322  2334456555543

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=84.47  E-value=87  Score=36.38  Aligned_cols=153  Identities=10%  Similarity=-0.017  Sum_probs=91.6

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhh-HHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcC
Q 010994           67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLD-LIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQR  145 (496)
Q Consensus        67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g  145 (496)
                      +|..+-.+.+.+.+|+-.++.-..........+.+...+. .|+..++.|....+... ....|+  .+. -|......|
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~-r~a~~s--l~~-qil~~e~~g 1463 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSAR-RFADPS--LYQ-QILEHEASG 1463 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHH-hhcCcc--HHH-HHHHHHhhc
Confidence            4444556778889999888884111100012233444444 88888988888777653 111232  233 344456679


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH-HHHHHHhhcCChHHHHHHH
Q 010994          146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR-ICINSYGARSDLEGMEIIL  224 (496)
Q Consensus       146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~a~~~~  224 (496)
                      ++..|...|+.+.+.+. +...+++-++......|.++.+....+-...+ ..+....++ .-+.+--+.+++|......
T Consensus      1464 ~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l 1541 (2382)
T KOG0890|consen 1464 NWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYL 1541 (2382)
T ss_pred             cHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhh
Confidence            99999999999988742 24667777777777777777776655544433 222222233 2334446677777666654


Q ss_pred             H
Q 010994          225 R  225 (496)
Q Consensus       225 ~  225 (496)
                      .
T Consensus      1542 ~ 1542 (2382)
T KOG0890|consen 1542 S 1542 (2382)
T ss_pred             h
Confidence            4

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=84.40  E-value=53  Score=33.82  Aligned_cols=225  Identities=12%  Similarity=0.024  Sum_probs=113.8

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChh-------HHHHHHH-HHHhcCCCCcHHHHHHHHHHC----CCCCChhhHHHHHH
Q 010994          142 VRQRQTDKALSHFRKMKEMGIALSTL-------TYNDIMC-LYSKTGQYEKVPDVLTEMKAK----NIFPDNFSYRICIN  209 (496)
Q Consensus       142 ~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~l~~-~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~li~  209 (496)
                      ....++++|..+..++...-..|+..       .|+.+-. .....|++++|.++-+.....    -..+....+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            45688899988888875542222221       3444433 234567888888887776654    12234455666667


Q ss_pred             HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHH---HH--HHHHHhcCCh--HHHHHHHHHHHHhcc-cC-----ccchHH
Q 010994          210 SYGARSDLEGMEIILREMESQPHIVLDWSTYA---SA--AHFYIKANLI--DKASDVLKKAEERLE-QK-----DGIGYN  276 (496)
Q Consensus       210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~l--i~~~~~~~~~--~~a~~~~~~m~~~~~-~~-----~~~~~~  276 (496)
                      +..-.|+++.|..+..... +..-.-+...+.   .+  ...+...|+.  .+....|........ ..     -..++.
T Consensus       506 a~~~~G~~~~Al~~~~~a~-~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         506 AAHIRGELTQALALMQQAE-QMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHhchHHHHHHHHHHHH-HHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            7777899999888876665 221112222222   22  1334555633  333334443322211 11     123344


Q ss_pred             HHHHHHHhc-CCHHHHHHHHHHHHhhcCCCCchh--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH----HHH-
Q 010994          277 FLISLYASL-GNKSEVLRLWDLEKTACKRYINRD--YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP----NAV-  348 (496)
Q Consensus       277 ~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l-  348 (496)
                      .+..++.+. +...++..-++.-....+.+-...  +..++......|+.++|...++++......++..++    ... 
T Consensus       585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v  664 (894)
T COG2909         585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV  664 (894)
T ss_pred             HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence            444444441 112222222221111111111111  235677778889999999988888765433322221    111 


Q ss_pred             -HHHHHhcCchhHHHHHHHH
Q 010994          349 -IIGYCNNGLVQNAEAILED  367 (496)
Q Consensus       349 -~~~~~~~g~~~~a~~~~~~  367 (496)
                       +......|+.+.+.....+
T Consensus       665 ~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         665 KLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             hHHHhcccCCHHHHHHHHHh
Confidence             1223356777777766655

>PRK09687 putative lyase; Provisional

Probab=83.57  E-value=32  Score=30.60  Aligned_cols=136  Identities=15%  Similarity=-0.059  Sum_probs=58.5

Q ss_pred             ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHhcccCccchHHHH
Q 010994          200 DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN-LIDKASDVLKKAEERLEQKDGIGYNFL  278 (496)
Q Consensus       200 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l  278 (496)
                      +..+-...+.++++.++. .+...+-.+. +.   ++..+-...+.++.+.+ +...+...+..+..   .++..+....
T Consensus       141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L-~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A  212 (280)
T PRK09687        141 STNVRFAVAFALSVINDE-AAIPLLINLL-KD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA  212 (280)
T ss_pred             CHHHHHHHHHHHhccCCH-HHHHHHHHHh-cC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence            334444445555555543 3333333333 11   22333333344444332 12334444443332   2445555555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY  352 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (496)
                      +.++.+.|+. .++..+-.....+.     .....+.++...|+. +|...+..+.+.  .||..+-...+.++
T Consensus       213 ~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        213 IIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             HHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            5556555553 33333332333211     223455566666663 455555555543  23444444444443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=83.38  E-value=43  Score=31.96  Aligned_cols=89  Identities=11%  Similarity=-0.061  Sum_probs=61.3

Q ss_pred             cHHHHHHHHHc--CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc-CHHHHHHHHH
Q 010994           46 IEPELDNWVKN--GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH-GFLSAESYFS  122 (496)
Q Consensus        46 ~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~  122 (496)
                      ..++++...+.  ...-|+..|...+..+-+.+.+.+...+|.+|...++  .+|+.+.....-.-..+ +++.|..+|.
T Consensus        87 ~~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp--~~~dLWI~aA~wefe~n~ni~saRalfl  164 (568)
T KOG2396|consen   87 PNRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP--NNPDLWIYAAKWEFEINLNIESARALFL  164 (568)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCchhHHhhhhhHHhhccchHHHHHHHH
Confidence            34444444433  4555888999999888888889999999999998763  55666555544333333 3888888888


Q ss_pred             hchhcCCC-HHHHHH
Q 010994          123 NLKDDEKT-YQTYGA  136 (496)
Q Consensus       123 ~~~~~~~~-~~~~~~  136 (496)
                      ...+..|+ +..|-.
T Consensus       165 rgLR~npdsp~Lw~e  179 (568)
T KOG2396|consen  165 RGLRFNPDSPKLWKE  179 (568)
T ss_pred             HHhhcCCCChHHHHH
Confidence            88877774 555543

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=83.35  E-value=11  Score=31.34  Aligned_cols=73  Identities=11%  Similarity=0.077  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC----HHHHHHHHH
Q 010994           65 LQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT----YQTYGALLN  139 (496)
Q Consensus        65 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~li~  139 (496)
                      .+.-+..+.+.++..+|+...++-.+..+  -+...-..++.++|-.|+++.|..-++-+....|+    ...|..+|.
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            34455666677777777777766666542  34444555566666666666666666555544432    344444444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.76  E-value=23  Score=27.64  Aligned_cols=51  Identities=12%  Similarity=0.053  Sum_probs=31.5

Q ss_pred             hcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHhc
Q 010994          389 DAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT-SILSKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       389 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                      ..++.+++..++..+.-       +.|+..-.. .-...+...|+|.+|.++|+.+.+.
T Consensus        22 ~~~d~~D~e~lLdALrv-------LrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRV-------LRPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHH-------hCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            36777777777777754       555543222 1223456677788888888777664

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=81.57  E-value=61  Score=32.44  Aligned_cols=146  Identities=14%  Similarity=0.068  Sum_probs=55.4

Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHH-----------HHHHHHHHHHhcccCccchHHHHHHH
Q 010994          213 ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDK-----------ASDVLKKAEERLEQKDGIGYNFLISL  281 (496)
Q Consensus       213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-----------a~~~~~~m~~~~~~~~~~~~~~l~~~  281 (496)
                      -.|++..+++....+-      .|.-+-..+...+...|-.+.           ...++-+... ..-.+...|..-+..
T Consensus       309 ~~~d~~~vL~~~~~~~------~~~w~aahladLl~~~g~L~~~~~~~~~~~~lre~~ll~YA~-~L~s~~~lW~vai~y  381 (566)
T PF07575_consen  309 FEGDIESVLKEISSLF------DDWWFAAHLADLLEHKGLLEDSEQEDFGGSSLREYLLLEYAS-SLMSHHSLWQVAIGY  381 (566)
T ss_dssp             HTS--GGGHHHHHHH--------HHHHHHHHHHHHHHTTSS--SS-----TS-HHHHHHHHHHH-HHHT-TTTHHHHHHH
T ss_pred             HccCHHHHHHHHHHHc------cchhHHHHHHHHHHhcCccccccccccccccHHHHHHHHHHH-HHhcCcchHHHHHHH
Confidence            3677777777766663      222233345555555554441           0000000000 111233444444444


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994          282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA  361 (496)
Q Consensus       282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  361 (496)
                      +...++..  ....+......+..+......++..|.+.|-.+.|..+.+.+-.+-.  ...-|..-+.-+.+.|+....
T Consensus       382 L~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v  457 (566)
T PF07575_consen  382 LSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLV  457 (566)
T ss_dssp             HHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH--------
T ss_pred             HHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHH
Confidence            43333221  44444445554545556666777778787877777777766654311  112233444444555555444


Q ss_pred             HHHHHHHH
Q 010994          362 EAILEDLV  369 (496)
Q Consensus       362 ~~~~~~~~  369 (496)
                      ..+.+.+.
T Consensus       458 ~~i~~~ll  465 (566)
T PF07575_consen  458 TRIADRLL  465 (566)
T ss_dssp             --------
T ss_pred             HHHHHHHH
Confidence            44443333

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.34  E-value=37  Score=29.85  Aligned_cols=73  Identities=12%  Similarity=0.085  Sum_probs=44.4

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKV  419 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~  419 (496)
                      +.....|..+|.+.+|.++.++.+..++- +...|-.++..+...|+--++...++++.+......|+..+...
T Consensus       283 gkva~~yle~g~~neAi~l~qr~ltldpL-~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi  355 (361)
T COG3947         283 GKVARAYLEAGKPNEAIQLHQRALTLDPL-SEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI  355 (361)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence            44455566677777777777766665433 55666677777777777666666666655544444455554433

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.00  E-value=2.6  Score=21.36  Aligned_cols=21  Identities=29%  Similarity=0.249  Sum_probs=13.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHH
Q 010994          135 GALLNCYVRQRQTDKALSHFR  155 (496)
Q Consensus       135 ~~li~~~~~~g~~~~A~~~~~  155 (496)
                      ..+...+...|++++|..+++
T Consensus         5 ~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    5 LALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHcCCHHHHHHHHh
Confidence            445566666777777766654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=80.82  E-value=1.2e+02  Score=35.38  Aligned_cols=116  Identities=15%  Similarity=0.032  Sum_probs=55.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHH----HHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010994          137 LLNCYVRQRQTDKALSHFRKM----KEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYG  212 (496)
Q Consensus       137 li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  212 (496)
                      +..+-.+++.+..|...++.-    ++..  -...-|..+...|...++++++..+...-..   .|+   ...-|....
T Consensus      1389 La~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e 1460 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHE 1460 (2382)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHH
Confidence            334444556666666666552    2110  0122233444466666666666555543111   111   223333445


Q ss_pred             hcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994          213 ARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK  262 (496)
Q Consensus       213 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  262 (496)
                      ..|++..|...|+.+. +.+. +...+++-++......|.++.++...+-
T Consensus      1461 ~~g~~~da~~Cye~~~-q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg 1508 (2382)
T KOG0890|consen 1461 ASGNWADAAACYERLI-QKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDG 1508 (2382)
T ss_pred             hhccHHHHHHHHHHhh-cCCC-ccccchhhHHHhhhcccchhHHHhhhcc
Confidence            5666666666666665 4432 3344555555555555555555444433

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=80.69  E-value=16  Score=31.75  Aligned_cols=87  Identities=11%  Similarity=0.166  Sum_probs=36.9

Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh---
Q 010994          173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK---  249 (496)
Q Consensus       173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~---  249 (496)
                      |+++++.++|.+++...-+--+..-+.........|-.|.+.+....+.++-.......+- -+...|..++..|..   
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl~VL  168 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLLHVL  168 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHHHHH
Confidence            4455555555555544433333211112223334444455555555555554443312111 122224444433332   


Q ss_pred             --cCChHHHHHHH
Q 010994          250 --ANLIDKASDVL  260 (496)
Q Consensus       250 --~~~~~~a~~~~  260 (496)
                        .|.+++|+++.
T Consensus       169 lPLG~~~eAeelv  181 (309)
T PF07163_consen  169 LPLGHFSEAEELV  181 (309)
T ss_pred             hccccHHHHHHHH
Confidence              35555555554

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=80.49  E-value=37  Score=31.84  Aligned_cols=63  Identities=14%  Similarity=0.057  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHhhcCCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          202 FSYRICINSYGARSDLEGMEIILREMESQPH------IVLDWSTYASAAHFYIKANLIDKASDVLKKAE  264 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  264 (496)
                      .+...+++.++-.||+..|+++++.+.....      +.-...+|..+.-+|.-.+++.+|.+.|..+.
T Consensus       123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL  191 (404)
T PF10255_consen  123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL  191 (404)
T ss_pred             HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455678888889999999999887752111      11234556677888888999999999998864

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=80.49  E-value=16  Score=32.75  Aligned_cols=84  Identities=14%  Similarity=0.045  Sum_probs=52.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc--
Q 010994          278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN--  355 (496)
Q Consensus       278 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  355 (496)
                      -...|.+.|.+++|++.|.......+ -+..++..-..+|.+...+..|+.=.......+        ...+.+|++.  
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~  173 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ  173 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence            45667888888888888876655544 466777777778888888777776665554431        2345555554  


Q ss_pred             -----CchhHHHHHHHHHHh
Q 010994          356 -----GLVQNAEAILEDLVE  370 (496)
Q Consensus       356 -----g~~~~a~~~~~~~~~  370 (496)
                           |...+|.+-++..++
T Consensus       174 AR~~Lg~~~EAKkD~E~vL~  193 (536)
T KOG4648|consen  174 ARESLGNNMEAKKDCETVLA  193 (536)
T ss_pred             HHHHHhhHHHHHHhHHHHHh
Confidence                 344444444444444

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=80.36  E-value=6.1  Score=21.25  Aligned_cols=27  Identities=30%  Similarity=0.333  Sum_probs=19.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010994          133 TYGALLNCYVRQRQTDKALSHFRKMKE  159 (496)
Q Consensus       133 ~~~~li~~~~~~g~~~~A~~~~~~m~~  159 (496)
                      +|..+...|...|++++|.+.|++..+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            566677777777888888877777654

...

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=80.11  E-value=1.3  Score=34.50  Aligned_cols=12  Identities=25%  Similarity=0.218  Sum_probs=4.6

Q ss_pred             HHHHHHHHHHhc
Q 010994          239 TYASAAHFYIKA  250 (496)
Q Consensus       239 ~~~~li~~~~~~  250 (496)
                      ..+.++..|++.
T Consensus        44 ~~~~L~~ly~~~   55 (143)
T PF00637_consen   44 LHTLLLELYIKY   55 (143)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHHhc
Confidence            333333333333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	496
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-13
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	1e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	4e-06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	7e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 71.4 bits (173), Expect = 3e-13
 Identities = 38/246 (15%), Positives = 74/246 (30%), Gaps = 12/246 (4%)

Query: 132 QTYGALLNCYVRQRQTDKA---LSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDV 188
           Q   A   C +   Q   A   L      ++    L+   YN +M  +++ G ++++  V
Sbjct: 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYV 187

Query: 189 LTEMKAKNIFPDNFSYRICINSYGARSDLEGM-EIILREMESQPHIVLDWSTYASAAHFY 247
           L  +K   + PD  SY   +   G +    G  E  L +M  +   +      A      
Sbjct: 188 LFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA-LFTAVLLSEE 246

Query: 248 IKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN 307
            +A ++     V        +    +  + L+    +   +    +L    KT    +  
Sbjct: 247 DRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306

Query: 308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED 367
           + +       M+L        V K    S      R     +       L +        
Sbjct: 307 QLH-------MELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNR 359

Query: 368 LVEKGK 373
           L  +  
Sbjct: 360 LEREVY 365

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 54.4 bits (129), Expect = 7e-08
 Identities = 23/215 (10%), Positives = 62/215 (28%), Gaps = 8/215 (3%)

Query: 42  PGTRIEPELDNWVKN-GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCD 100
              ++   L++  +         +L R++++   +         S   ++  +       
Sbjct: 71  LSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL 130

Query: 101 HAVQLDLIGRVHGFLSAESYFSNLKDDEK-----TYQTYGALLNCYVRQRQTDKALSHFR 155
            A              A           +     T   Y A++  + RQ    + +    
Sbjct: 131 LAF-FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLF 189

Query: 156 KMKEMGIALSTLTYNDIMCLYSKTGQYEK-VPDVLTEMKAKNIFPDNFSYRICINSYGAR 214
            +K+ G+    L+Y   +    +  Q    +   L +M  + +        + ++     
Sbjct: 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249

Query: 215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK 249
           + L+ +  +       P +    +T       Y K
Sbjct: 250 TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 47.1 bits (110), Expect = 1e-05
 Identities = 22/219 (10%), Positives = 53/219 (24%), Gaps = 7/219 (3%)

Query: 224 LREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYA 283
           L+     P    ++           +      A  +     +  E         L+    
Sbjct: 44  LKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAP 103

Query: 284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVL---KEWELSGNSY 340
              +             A      +  +   +  +   +   A  +L             
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163

Query: 341 DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCM 400
              + NAV++G+   G  +    +L  + + G      S+A          +     +  
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223

Query: 401 KAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAF 439
                  +  +G K        +LS+      ++ V   
Sbjct: 224 LE----QMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV 258

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.9 bits (170), Expect = 9e-13
 Identities = 70/546 (12%), Positives = 158/546 (28%), Gaps = 143/546 (26%)

Query: 49  ELDNWVKNGNKVRVGELQRIIRDLRKR-----KRF-SQALEVS-DWMNRKGICVFAPCDH 101
           E+D+ + + +   V    R+   L  +     ++F  + L ++  ++             
Sbjct: 50  EIDHIIMSKD--AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP---------- 97

Query: 102 AVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYV-RQRQTDK---ALSHFRK- 156
            ++ +                 L +D + +  Y       V R +   K   AL   R  
Sbjct: 98  -IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY------NVSRLQPYLKLRQALLELRPA 150

Query: 157 -------MKEMG---IALSTLTYNDIMCLYS------KTGQYEKVPDVLTEMKAKNIFPD 200
                  +   G   +AL       + C                   VL  ++       
Sbjct: 151 KNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ------- 203

Query: 201 NFSYRICIN-------SYGARSDLEGMEIILRE-MESQPH----IVLD--WSTYASAAHF 246
              Y+I  N       S   +  +  ++  LR  ++S+P+    +VL    +  A  A F
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-F 262

Query: 247 YIK---------ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYAS-LGNKSEVLRLWD 296
            +            + D  S               +  + + SL    L  + +     D
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----D 317

Query: 297 LEKTACKRYINRDYITMLEALMKLG-------EHEEAEKVLKEWELSGNS---------Y 340
           L +       N   ++++   ++ G       +H   +K+    E S N          +
Sbjct: 318 LPREVLT--TNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF 375

Query: 341 --------DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG--KATTPNSWAVVAAGYFDA 390
                      IP  ++     + +  +   ++  L +    +     S   + + Y + 
Sbjct: 376 DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 391 GKTERGFQCM-KAALSVYVEGKGWKPDPKVITS----ILSKLG----DEGSVQDVEAFVA 441
                    + ++ +  Y   K +  D  +         S +G    +    + +  F  
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-- 493

Query: 442 ALRTVIPMNRQMY--HAFIKANIRN--------GKGVDELLDSMK-ADGIDEDEETKEIL 490
                    R ++    F++  IR+        G  ++ L         I +++   E L
Sbjct: 494 ---------RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL 544

Query: 491 VCTMEK 496
           V  +  
Sbjct: 545 VNAILD 550

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 49.4 bits (118), Expect = 1e-06
 Identities = 28/229 (12%), Positives = 67/229 (29%), Gaps = 41/229 (17%)

Query: 114 FLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM 173
           +  AE     + DD +  + +  +   Y   +QT  ++ H  +  ++       +   I 
Sbjct: 124 YREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQ 183

Query: 174 CL------YSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREM 227
            L      Y     Y+K                            A   LE    +  ++
Sbjct: 184 SLFVIAGNYDDFKHYDK----------------------------ALPHLEAALELAMDI 215

Query: 228 ESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG----YNFLISLYA 283
           ++   I     +  + A+ Y ++     A +  +KA +   +K           L     
Sbjct: 216 QNDRFIA---ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLC 272

Query: 284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKE 332
             G   +  +  +          ++ Y  +   L  + +    E+ + +
Sbjct: 273 KAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 31/227 (13%), Positives = 67/227 (29%), Gaps = 42/227 (18%)

Query: 116 SAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS-----TLTYN 170
           + + Y ++     +T Q+   +   Y   +  DKAL H     E+ + +       ++  
Sbjct: 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLL 226

Query: 171 DIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQ 230
           +I   Y ++G  +                             A    +    + RE    
Sbjct: 227 NIANSYDRSGDDQM----------------------------AVEHFQKAAKVSREKVPD 258

Query: 231 PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGY----NFLISLYASLG 286
                        +    KA    KA   +++  + +  +    Y     FL ++Y    
Sbjct: 259 LLP----KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETV 314

Query: 287 NKSEVLR-LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKE 332
           ++ ++   L   EK     YI     +           E+A    ++
Sbjct: 315 DERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRK 361

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 39/244 (15%), Positives = 74/244 (30%), Gaps = 30/244 (12%)

Query: 114 FLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIM 173
           F  AES    +KD  +  + +  +   Y   +QT  ++ + R+  E+           + 
Sbjct: 126 FKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQ 185

Query: 174 CL------YSKTGQYEKVPDVLTEMKAKNIF---PDNFSYRICINSYG-----------A 213
           C       +    QYE         KA ++             + + G           A
Sbjct: 186 CHSLFATNFLDLKQYEDAISHFQ--KAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243

Query: 214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGI 273
               +    +  E    P +      Y      + K   IDKA +   K     ++   +
Sbjct: 244 IPYFKRAIAVFEESNILPSLP---QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDV 300

Query: 274 GY----NFLISLYASLGNKSEVLR-LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEK 328
            Y     FL SLY S  ++  +      LE       +    I + +   +    ++A  
Sbjct: 301 IYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASA 360

Query: 329 VLKE 332
              +
Sbjct: 361 YFLK 364

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 31/237 (13%), Positives = 67/237 (28%), Gaps = 30/237 (12%)

Query: 121 FSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTL-----TYNDIMCL 175
                     Y          + QR+   A+  F+K +   I +         +  +   
Sbjct: 93  KQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSES 152

Query: 176 YSKTGQYEKVPDVLTEMKAKNIFPDNFSYRI----CINSYG-ARSDLEGMEI-------- 222
           Y    Q     D     +A  I+ ++ +Y I    C + +     DL+  E         
Sbjct: 153 YYYMKQTYFSMDYAR--QAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKA 210

Query: 223 --ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA---EERLEQKDGIG--Y 275
             +    +    +     T  +        +  + A    K+A    E       +   Y
Sbjct: 211 YSMAEAEKQPQLMG---RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAY 267

Query: 276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKE 332
             +  ++  LG   +            ++  +  Y++  E L  L      E+ ++ 
Sbjct: 268 FLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQG 324

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 25/226 (11%), Positives = 59/226 (26%), Gaps = 37/226 (16%)

Query: 119 SYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTL-----TYNDIM 173
           S+     D +     Y      +   +Q ++A   + +  E      +L      +    
Sbjct: 24  SFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83

Query: 174 CLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHI 233
            +     +  +                          Y      +   + L         
Sbjct: 84  MMLKDLQRMPEAVQY---------------IEKASVMYVENGTPDTAAMALDRAGK---- 124

Query: 234 VLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR 293
           +++    + A H Y +A  + +  + L++A E               L        E   
Sbjct: 125 LMEPLDLSKAVHLYQQAAAVFENEERLRQAAEL--------IGKASRLLVRQQKFDEAAA 176

Query: 294 LWDLEKTACKR-----YINRDYITMLEALMKLGEHEEAEKVLKEWE 334
               EK+  K         +  I  +   +   ++  A+K ++E  
Sbjct: 177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 37/225 (16%), Positives = 67/225 (29%), Gaps = 28/225 (12%)

Query: 132 QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALST-----LTYNDIMCLYSKTGQ----- 181
                L      + +  ++L+  ++ ++M            +      +    G      
Sbjct: 54  VATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAW 113

Query: 182 --YEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILRE-----MESQPHIV 234
              EK   ++ E   + +    F  RI      A + L+  E   R         QP   
Sbjct: 114 ETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 173

Query: 235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGY------NFLISLYASLGNK 288
           L     A      +    +D A   L + E  L                 +  +   G+K
Sbjct: 174 LQC--LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDK 231

Query: 289 SEV---LRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVL 330
           +     LR     + A   ++   +  +  A + LGE E AE VL
Sbjct: 232 AAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVL 276

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	496
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.98
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.94
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.94
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.9
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.87
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.86
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.86
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.8
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.77
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.76
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.76
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.74
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.74
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.73
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.69
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.69
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.68
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.68
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.66
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.66
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.63
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.63
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.62
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.61
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.61
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.6
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.57
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.55
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.54
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.51
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.5
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.5
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.48
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.47
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.45
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.45
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.44
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.4
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.37
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.36
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.31
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.29
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.29
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.25
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.24
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.23
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.14
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.13
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.12
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.11
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.1
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.06
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.04
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.03
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.03
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.02
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.02
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.01
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.99
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.99
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.97
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.96
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.96
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.95
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.94
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.85
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.85
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.84
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.84
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.77
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.75
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.75
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.75
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.74
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.73
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.72
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.71
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.7
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.7
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.69
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.68
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.68
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.67
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.67
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.65
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.62
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.61
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.61
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.6
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.59
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.59
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.57
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.55
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.53
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.5
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.5
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.49
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.48
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.46
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.46
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.44
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.44
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.42
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.42
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.41
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.4
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.35
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.35
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.35
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.33
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.31
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.29
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.27
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.23
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.22
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.21
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.2
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.16
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.13
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.1
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.09
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.08
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.08
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.08
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.02
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.97
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.91
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.9
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.89
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.85
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.83
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.76
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.73
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.72
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.71
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.7
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.67
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.67
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.62
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.55
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.41
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.41
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.39
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.24
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.93
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.9
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.8
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.8
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.63
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.54
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.48
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.45
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.33
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.28
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.24
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.22
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.22
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.2
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.14
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.87
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.62
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.5
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	95.49
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.04
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	94.84
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.62
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.55
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	94.52
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	94.48
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.22
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	93.81
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.51
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.4
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.34
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	93.29
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.21
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.89
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.74
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	92.13
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.55
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.54
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.16
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	89.02
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.52
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	87.22
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	86.09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	85.58
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	85.42
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	85.02
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	84.99
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	84.62
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	84.51
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	84.29
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	81.42

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-38  Score=314.99  Aligned_cols=416  Identities=11%  Similarity=0.005  Sum_probs=287.6

Q ss_pred             CCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHH
Q 010994           59 KVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALL  138 (496)
Q Consensus        59 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li  138 (496)
                      .++...|+.++..+.+.|++++|+.+|+.+....   +++..+..++..+.+.|++++|..+|+.+....++..+++.++
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~  157 (597)
T 2xpi_A           81 LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDIT---GNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAA  157 (597)
T ss_dssp             -CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhhC---CCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHH
Confidence            3567788999999999999999999999988654   3455666678888899999999999998876667888899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHH-HC--------------CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC-----
Q 010994          139 NCYVRQRQTDKALSHFRKMK-EM--------------GIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF-----  198 (496)
Q Consensus       139 ~~~~~~g~~~~A~~~~~~m~-~~--------------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----  198 (496)
                      .+|.+.|++++|.++|+++. ..              |.+++..+|+.++.+|.+.|++++|.++|++|.+.+..     
T Consensus       158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  237 (597)
T 2xpi_A          158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF  237 (597)
T ss_dssp             HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence            99999999999999988532 21              23445788999999999999999999999888765321     


Q ss_pred             -----------------------------------------------------------------CChhhHHHHHHHHhh
Q 010994          199 -----------------------------------------------------------------PDNFSYRICINSYGA  213 (496)
Q Consensus       199 -----------------------------------------------------------------p~~~~~~~li~~~~~  213 (496)
                                                                                       ++..+++.++.+|.+
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV  317 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence                                                                             333444444444445


Q ss_pred             cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHH
Q 010994          214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR  293 (496)
Q Consensus       214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  293 (496)
                      .|++++|.++|+++. +.+. .+..+++.++.+|.+.|++++|..+++++.... +.+..+|+.++..|.+.|++++|.+
T Consensus       318 ~g~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  394 (597)
T 2xpi_A          318 RSRFIDVLAITTKIL-EIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR  394 (597)
T ss_dssp             TTCHHHHHHHHHHHH-HHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcCHHHHHHHHHHHH-HcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence            555555555554444 2222 233444445555555555555555555544322 2445666677777777777777777


Q ss_pred             HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994          294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK  373 (496)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (496)
                      +|+.+....+ .+..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+...
T Consensus       395 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  472 (597)
T 2xpi_A          395 YFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ  472 (597)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7776665543 455677777777777777777777777776653 33666777777777777777777777777776644


Q ss_pred             CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994          374 ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD--PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR  451 (496)
Q Consensus       374 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  451 (496)
                      . +..+|+.++..|.+.|++++|.++|+++.+.. .+.+..|+  ..++..++.+|.+.|++++|.++++++.+..|.+.
T Consensus       473 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~  550 (597)
T 2xpi_A          473 Y-DPLLLNELGVVAFNKSDMQTAINHFQNALLLV-KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA  550 (597)
T ss_dssp             C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCH
T ss_pred             C-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhh-hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            3 67777777777777777777777777777611 01144666  56777777777777888888887777776666777


Q ss_pred             HHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhH
Q 010994          452 QMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEET  486 (496)
Q Consensus       452 ~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t  486 (496)
                      .+|..++.+|.+.|  ++|.+.|+++.+  +.|+...
T Consensus       551 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~  585 (597)
T 2xpi_A          551 NVHTAIALVYLHKKIPGLAITHLHESLA--ISPNEIM  585 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCChH
Confidence            77777777777777  677777777776  3465443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-36  Score=298.68  Aligned_cols=417  Identities=10%  Similarity=0.003  Sum_probs=355.9

Q ss_pred             CcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhH
Q 010994           28 NKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDL  107 (496)
Q Consensus        28 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (496)
                      .++.++..+.+.++... ...+++.+.  +..|+..++..++..|.+.|++++|+.+|+.+....   .++..+..++..
T Consensus        86 ~~~~~~~~~~~~g~~~~-A~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~l~~~  159 (597)
T 2xpi_A           86 YLRLWRHDALMQQQYKC-AAFVGEKVL--DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYN---RSSACRYLAAFC  159 (597)
T ss_dssp             HHHHHHHHHHHTTCHHH-HHHHHHHHH--HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGG---TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCchH-HHHHHHHHH--hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccc---cchhHHHHHHHH
Confidence            34455555666555333 233455554  345677889999999999999999999999886533   567788888999


Q ss_pred             HHhhcCHHHHHHHHHhchhcC-----------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--------
Q 010994          108 IGRVHGFLSAESYFSNLKDDE-----------------KTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGI--------  162 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--------  162 (496)
                      +.+.|++++|..+|+++....                 ++..+|+.++.+|.+.|++++|.++|++|.+.+.        
T Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  239 (597)
T 2xpi_A          160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ  239 (597)
T ss_dssp             HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            999999999999998543322                 2578899999999999999999999998865432        


Q ss_pred             --------------------------------------------------------------CCChhHHHHHHHHHHhcC
Q 010994          163 --------------------------------------------------------------ALSTLTYNDIMCLYSKTG  180 (496)
Q Consensus       163 --------------------------------------------------------------~p~~~~~~~l~~~~~~~~  180 (496)
                                                                                    +++..+|+.++.+|.+.|
T Consensus       240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g  319 (597)
T 2xpi_A          240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRS  319 (597)
T ss_dssp             HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTT
T ss_pred             HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhc
Confidence                                                                          267888999999999999


Q ss_pred             CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010994          181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVL  260 (496)
Q Consensus       181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  260 (496)
                      ++++|..+|+++.+.+. .+..++..++.++.+.|++++|..+++++. .... .+..+++.++.+|.+.|++++|.++|
T Consensus       320 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~  396 (597)
T 2xpi_A          320 RFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLV-DRHP-EKAVTWLAVGIYYLCVNKISEARRYF  396 (597)
T ss_dssp             CHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHH-hhCc-ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            99999999999998653 377889999999999999999999999997 4443 67889999999999999999999999


Q ss_pred             HHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010994          261 KKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY  340 (496)
Q Consensus       261 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  340 (496)
                      +++.+..+ .+..+|+.++.+|.+.|++++|+++|+.+....+ .+..++..++.+|.+.|++++|.++|+++.+.. +.
T Consensus       397 ~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~  473 (597)
T 2xpi_A          397 SKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY  473 (597)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence            99987543 5678999999999999999999999999887765 678899999999999999999999999999875 34


Q ss_pred             CcccHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCC
Q 010994          341 DTRIPNAVIIGYCNNGLVQNAEAILEDLVEK----GKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWK  414 (496)
Q Consensus       341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  414 (496)
                      +..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.+.|+++.+      ..+
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~p  547 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL------LST  547 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSS
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCC
Confidence            7889999999999999999999999999876    66777  78999999999999999999999999997      224


Q ss_pred             CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 010994          415 PDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANI  462 (496)
Q Consensus       415 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~  462 (496)
                      .+..++..+..+|.+.|++++|.+.|+++.+..|.+...|..+..+|.
T Consensus       548 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          548 NDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE  595 (597)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence            478999999999999999999999999999988999999998887764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=8.8e-30  Score=238.47  Aligned_cols=381  Identities=12%  Similarity=-0.003  Sum_probs=327.8

Q ss_pred             HHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCC
Q 010994           68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQ  146 (496)
Q Consensus        68 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~  146 (496)
                      +...+.+.|++++|++.++.+.+..  |.++.....+...+.+.|++++|..+++.+....| +..+|..+...+.+.|+
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCC
Confidence            4566788999999999999998875  24455566667788899999999999999888877 68899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHH
Q 010994          147 TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD-NFSYRICINSYGARSDLEGMEIILR  225 (496)
Q Consensus       147 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~  225 (496)
                      +++|...|+++.+.. +.+..+|..+..++.+.|++++|...|+++.+..  |+ ...+..+...+...|++++|.+.|+
T Consensus        83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (388)
T 1w3b_A           83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYL  159 (388)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            999999999998763 2356789999999999999999999999998863  44 4567778888999999999999999


Q ss_pred             HhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 010994          226 EMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY  305 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  305 (496)
                      ++. ...+ .+..+|..+...+...|++++|...|+++....+ .+...|..+...+...|++++|...++......+ .
T Consensus       160 ~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~  235 (388)
T 1w3b_A          160 KAI-ETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-N  235 (388)
T ss_dssp             HHH-HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-T
T ss_pred             HHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-C
Confidence            987 4443 5678899999999999999999999999988654 5567889999999999999999999998887765 5


Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 010994          306 INRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAA  385 (496)
Q Consensus       306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  385 (496)
                      +..++..+..++.+.|++++|...++++.+..+ .+..++..+...+.+.|++++|...|+++.+..+ .+..++..+..
T Consensus       236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~  313 (388)
T 1w3b_A          236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLAN  313 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHH
Confidence            668888999999999999999999999998742 2567889999999999999999999999998754 37889999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          386 GYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       386 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      .+...|++++|...++++++      ..+.+..++..+..++.+.|++++|...++++.+..|.+...|..+...+...|
T Consensus       314 ~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~  387 (388)
T 1w3b_A          314 IKREQGNIEEAVRLYRKALE------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTT------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence            99999999999999999986      334457889999999999999999999999998888888899999988887654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.3e-28  Score=230.48  Aligned_cols=365  Identities=13%  Similarity=0.079  Sum_probs=321.8

Q ss_pred             hhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994          105 LDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE  183 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  183 (496)
                      ...+.+.|++++|...+..+....| +...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|+++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~   84 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence            4566789999999999999988888 47778888899999999999999999988763 458889999999999999999


Q ss_pred             cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      +|...|+++.+.. +.+..+|..+..++.+.|++++|.+.|+++. ..++ .+...+..+...+...|++++|.+.|+++
T Consensus        85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSAL-QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999998853 2245679999999999999999999999988 4443 45667778889999999999999999999


Q ss_pred             HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 010994          264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR  343 (496)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  343 (496)
                      ....+ .+..+|..+...+...|++++|...|+.+....+ .+...+..+...+...|++++|...+++..+..+ .+..
T Consensus       162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~  238 (388)
T 1w3b_A          162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV  238 (388)
T ss_dssp             HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred             HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHH
Confidence            88643 5578899999999999999999999999988765 5667899999999999999999999999988742 3567


Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI  423 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l  423 (496)
                      ++..+...|.+.|++++|...|+++.+.++. +..+|..+...+.+.|++++|.+.|+++++      ..+.+..++..+
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l  311 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR------LCPTHADSLNNL  311 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH------HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCcccHHHHHHH
Confidence            8899999999999999999999999987654 678999999999999999999999999998      345678899999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChh
Q 010994          424 LSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEE  485 (496)
Q Consensus       424 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~  485 (496)
                      ...+...|++++|...++++.+..|.+..+|..++.+|.+.|  ++|...++++.+  +.|+..
T Consensus       312 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~  373 (388)
T 1w3b_A          312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFA  373 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCH
Confidence            999999999999999999999888889999999999999999  899999999987  557654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.98  E-value=2.3e-31  Score=252.91  Aligned_cols=203  Identities=15%  Similarity=0.148  Sum_probs=159.9

Q ss_pred             HHHHHHhchhcC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC---------Cc
Q 010994          117 AESYFSNLKDDE--KT-YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY---------EK  184 (496)
Q Consensus       117 A~~~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~---------~~  184 (496)
                      +..+.+.+.+..  +. ..+++.+|++|++.|++++|+++|++|.+.|++||..+||+||.+|++.+..         ++
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            344444444432  22 3467888899999999999999999999999999999999999998877654         45


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          185 VPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAE  264 (496)
Q Consensus       185 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  264 (496)
                      |.++|++|...|+.||..||+++|.+|++.|++++|.++|++|. ..|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~-~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMK-AFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            78888888888888888888888888888888888888888887 77888888888888888888888888888888888


Q ss_pred             HhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc
Q 010994          265 ERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKL  320 (496)
Q Consensus       265 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  320 (496)
                      +.|+.||..||+.+|.+|++.|++++|.+++++|...+..|+..||+.++..++..
T Consensus       168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            88888888888888888888888888888888888888888888888888877653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.97  E-value=7.6e-31  Score=249.40  Aligned_cols=213  Identities=11%  Similarity=0.062  Sum_probs=108.9

Q ss_pred             HHHHHHHHHHCCCCCChh-HHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994          150 ALSHFRKMKEMGIALSTL-TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME  228 (496)
Q Consensus       150 A~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~  228 (496)
                      +..+.+++.++++.+.+. .++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+...++        
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------   80 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------   80 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS--------
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh--------
Confidence            344445555555544432 45666677777777777777777777667777777777777666655432100        


Q ss_pred             cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch
Q 010994          229 SQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR  308 (496)
Q Consensus       229 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  308 (496)
                                         .+.+++++|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|...+..|+..
T Consensus        81 -------------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~  141 (501)
T 4g26_A           81 -------------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR  141 (501)
T ss_dssp             -------------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             -------------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc
Confidence                               0011234455555555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF  388 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  388 (496)
                      +|+.+|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+
T Consensus       142 tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~  221 (501)
T 4g26_A          142 SYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK  221 (501)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred             eehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555554


Q ss_pred             h
Q 010994          389 D  389 (496)
Q Consensus       389 ~  389 (496)
                      .
T Consensus       222 s  222 (501)
T 4g26_A          222 S  222 (501)
T ss_dssp             S
T ss_pred             c
Confidence            3

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.7e-24  Score=210.49  Aligned_cols=415  Identities=9%  Similarity=-0.011  Sum_probs=315.2

Q ss_pred             hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHH
Q 010994           62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNC  140 (496)
Q Consensus        62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~  140 (496)
                      ...+..+...+.+.|++++|+..|+.+.+..   +++..+..+...+.+.|++++|...|+++.+..| +..+|..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence            4567788889999999999999999999977   3677777788999999999999999999998888 58899999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC-----------------------------------CcH
Q 010994          141 YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY-----------------------------------EKV  185 (496)
Q Consensus       141 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~-----------------------------------~~a  185 (496)
                      +.+.|++++|...|+.+...+. ++......++..+......                                   ...
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            9999999999999999988753 3444444444333321111                                   111


Q ss_pred             HHHHHHHHHCCCC--------C-ChhhHHHHHHHHhh---cCChHHHHHHHHHhhcC----C--CC------CCCHHHHH
Q 010994          186 PDVLTEMKAKNIF--------P-DNFSYRICINSYGA---RSDLEGMEIILREMESQ----P--HI------VLDWSTYA  241 (496)
Q Consensus       186 ~~~~~~m~~~~~~--------p-~~~~~~~li~~~~~---~~~~~~a~~~~~~~~~~----~--~~------~~~~~~~~  241 (496)
                      ..+...+......        | +...+......+..   .|++++|..+|+++...    .  ..      +.+..++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence            1111111111111        1 13334444444443   88999999999888730    2  11      13356677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC
Q 010994          242 SAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLG  321 (496)
Q Consensus       242 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  321 (496)
                      .+...+...|++++|...|+++....+.  ..++..+..++...|++++|...++......+ .+...+..+...+...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhC
Confidence            7888899999999999999998876643  77888889999999999999999998877655 56678888899999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHH
Q 010994          322 EHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMK  401 (496)
Q Consensus       322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  401 (496)
                      ++++|...++.+.+... .+...+..+...|...|++++|...++++.+.... +...+..+...+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999988643 35677888888899999999999999998876544 66788889999999999999999999


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHHhc---cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994          402 AALSVYVEGKGWKPDPKVITSILSKLGD---EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK  476 (496)
Q Consensus       402 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~  476 (496)
                      ++....-......-....+..+...+..   .|++++|...++.+....|.+..+|..+..+|.+.|  ++|...|++..
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  476 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA  476 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9887221000000113478888888888   899999999999888878888899999999999999  78999999988


Q ss_pred             hCCCCCChhHH
Q 010994          477 ADGIDEDEETK  487 (496)
Q Consensus       477 ~~g~~p~~~t~  487 (496)
                      +  +.|+....
T Consensus       477 ~--~~~~~~~~  485 (514)
T 2gw1_A          477 D--LARTMEEK  485 (514)
T ss_dssp             H--HCSSHHHH
T ss_pred             H--hccccHHH
Confidence            7  44665443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=5.2e-25  Score=214.11  Aligned_cols=405  Identities=9%  Similarity=-0.077  Sum_probs=314.0

Q ss_pred             hccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHH
Q 010994           36 ISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFL  115 (496)
Q Consensus        36 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (496)
                      +...|+...+ ...++......  |+...|..+...+.+.|++++|++.++.+.+.+  |.++..+..+...+.+.|+++
T Consensus        16 ~~~~g~~~~A-~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~   90 (514)
T 2gw1_A           16 FFRNKKYDDA-IKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFA   90 (514)
T ss_dssp             HHHTSCHHHH-HHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhccHHHH-HHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHH
Confidence            3344443333 33555555544  689999999999999999999999999999876  355667777889999999999


Q ss_pred             HHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------------------------------
Q 010994          116 SAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEM----------------------------------  160 (496)
Q Consensus       116 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------------------------------  160 (496)
                      +|...|+++....| +......++..+.+......+.+.+..+...                                  
T Consensus        91 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (514)
T 2gw1_A           91 DAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGI  170 (514)
T ss_dssp             HHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhh
Confidence            99999999988766 4444445555544433333333333211111                                  


Q ss_pred             -CC---------CCChhHHHHHHHHHHh---cCCCCcHHHHHHHHHH-----CCCCC--------ChhhHHHHHHHHhhc
Q 010994          161 -GI---------ALSTLTYNDIMCLYSK---TGQYEKVPDVLTEMKA-----KNIFP--------DNFSYRICINSYGAR  214 (496)
Q Consensus       161 -g~---------~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~-----~~~~p--------~~~~~~~li~~~~~~  214 (496)
                       ..         +.+...+......+..   .|++++|...|+++.+     ....|        +..++..+..++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (514)
T 2gw1_A          171 FKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLK  250 (514)
T ss_dssp             SCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHC
Confidence             00         1114445555555554   8999999999999988     32122        345678888999999


Q ss_pred             CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994          215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL  294 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  294 (496)
                      |++++|...++++. ..+.  +...+..+..+|...|++++|...++++....+ .+..++..+...+...|++++|...
T Consensus       251 ~~~~~A~~~~~~~l-~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~  326 (514)
T 2gw1_A          251 NDPLGAHEDIKKAI-ELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKD  326 (514)
T ss_dssp             SCHHHHHHHHHHHH-HHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHH-hhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999987 4443  388888999999999999999999999987654 5677899999999999999999999


Q ss_pred             HHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC
Q 010994          295 WDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA  374 (496)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  374 (496)
                      ++......+ .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|...++++.+....
T Consensus       327 ~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          327 FDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             HHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            998888766 567788999999999999999999999998874 336778889999999999999999999998875432


Q ss_pred             -CC----HhHHHHHHHHHHh---cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994          375 -TT----PNSWAVVAAGYFD---AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       375 -p~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                       ++    ...+..+...+..   .|++++|...+++++.      ..+.+...+..+...+.+.|++++|...+++..+.
T Consensus       405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK------LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence             11    3389999999999   9999999999999997      23345778889999999999999999999999887


Q ss_pred             CCCCHHHHHHH
Q 010994          447 IPMNRQMYHAF  457 (496)
Q Consensus       447 ~~~~~~~~~~l  457 (496)
                      .|.+...+..+
T Consensus       479 ~~~~~~~~~~~  489 (514)
T 2gw1_A          479 ARTMEEKLQAI  489 (514)
T ss_dssp             CSSHHHHHHHH
T ss_pred             ccccHHHHHHH
Confidence            77777776655

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=9.5e-24  Score=201.62  Aligned_cols=327  Identities=11%  Similarity=0.004  Sum_probs=249.0

Q ss_pred             HHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC
Q 010994          120 YFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF  198 (496)
Q Consensus       120 ~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~  198 (496)
                      .+..+....| +...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|...|+++.+.+ +
T Consensus        14 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p   91 (450)
T 2y4t_A           14 GTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-M   91 (450)
T ss_dssp             ---------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             cccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence            3333333345 57778888888888888888888888887653 3367788888888888888888888888888764 2


Q ss_pred             CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH---HHHHHH------------HHHHHhcCChHHHHHHHHHH
Q 010994          199 PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDW---STYASA------------AHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       199 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m  263 (496)
                      .+..++..+..++.+.|++++|.+.|+++. ..+. .+.   ..+..+            ...+...|++++|...|+++
T Consensus        92 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~  169 (450)
T 2y4t_A           92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVL-KSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI  169 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356777888888888888888888888887 4432 233   444444            44488889999999999988


Q ss_pred             HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 010994          264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR  343 (496)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  343 (496)
                      .+..+ .+..++..+..+|...|++++|...|+.+....+ .+..++..++.++...|++++|...++.+.+... .+..
T Consensus       170 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~  246 (450)
T 2y4t_A          170 LEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKR  246 (450)
T ss_dssp             HHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred             HHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHH
Confidence            77543 5677888888899999999999999988877655 5677888888899999999999999998887632 2333


Q ss_pred             cHHHH------------HHHHHhcCchhHHHHHHHHHHhcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhh
Q 010994          344 IPNAV------------IIGYCNNGLVQNAEAILEDLVEKGKATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVY  407 (496)
Q Consensus       344 ~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  407 (496)
                      .+..+            ...+.+.|++++|...|+++.+..+. +    ...|..+...+.+.|++++|+..+++++.  
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--  323 (450)
T 2y4t_A          247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ--  323 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            34333            77888999999999999999886433 2    34788888999999999999999999987  


Q ss_pred             hcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          408 VEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       408 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                          -.+.+...+..+..+|...|++++|...++++.+..|.+...+..+..+
T Consensus       324 ----~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  372 (450)
T 2y4t_A          324 ----MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA  372 (450)
T ss_dssp             ----HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             ----hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence                2234678899999999999999999999999888778888888888743

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.94  E-value=2.4e-23  Score=198.83  Aligned_cols=367  Identities=12%  Similarity=0.030  Sum_probs=234.6

Q ss_pred             CCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHH
Q 010994           59 KVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGAL  137 (496)
Q Consensus        59 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l  137 (496)
                      +.+...+..+...+.+.|++++|+++|+.+.+..  +.++..+..+...+...|++++|...|+++....| +..++..+
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l  100 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQR  100 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence            3455566677777777777777777777776643  12344444445555555555555555555555544 35555555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 010994          138 LNCYVRQRQTDKALSHFRKMKEMGIALST---LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGAR  214 (496)
Q Consensus       138 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  214 (496)
                      ..+|.+.|++++|...|+++.+.+.. +.   ..+..++..+..                       ..+..+...+...
T Consensus       101 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~  156 (450)
T 2y4t_A          101 GHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS  156 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence            55555555555555555555544211 22   334433332110                       0122234446677


Q ss_pred             CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHH
Q 010994          215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRL  294 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  294 (496)
                      |++++|...|+++. .... .+..++..+..+|...|++++|...|+++.+..+ .+..+|..+..+|...|++++|+..
T Consensus       157 ~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~  233 (450)
T 2y4t_A          157 GDYTAAIAFLDKIL-EVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSE  233 (450)
T ss_dssp             TCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHH-HhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            78888888887776 3332 4667777777888888888888888887766543 5567777788888888888888888


Q ss_pred             HHHHHhhcCCCCchhHHHH------------HHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCc
Q 010994          295 WDLEKTACKRYINRDYITM------------LEALMKLGEHEEAEKVLKEWELSGNSYD-----TRIPNAVIIGYCNNGL  357 (496)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~  357 (496)
                      |+.+....+ .+...+..+            ...+.+.|++++|...++.+.+..  |+     ...+..+...+.+.|+
T Consensus       234 ~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~  310 (450)
T 2y4t_A          234 VRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEK  310 (450)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCC
Confidence            877766543 333334333            778888999999999999988763  33     3467788888999999


Q ss_pred             hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHH----------
Q 010994          358 VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSK----------  426 (496)
Q Consensus       358 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~----------  426 (496)
                      +++|...++++.+..+. +...|..+..+|...|++++|...++++++       ..|+ ...+..+..+          
T Consensus       311 ~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~  382 (450)
T 2y4t_A          311 PVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE-------HNENDQQIREGLEKAQRLLKQSQKR  382 (450)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TSSSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCcchHHHHHHHHHHHHHhhcccch
Confidence            99999999998876533 678899999999999999999999999986       5554 4455555422          


Q ss_pred             --HhccC-----CHHHHHHHHHHH-HhcCC---CCH-------HHHHHHHHHHHhCC
Q 010994          427 --LGDEG-----SVQDVEAFVAAL-RTVIP---MNR-------QMYHAFIKANIRNG  465 (496)
Q Consensus       427 --~~~~g-----~~~~a~~~~~~~-~~~~~---~~~-------~~~~~l~~~~~~~g  465 (496)
                        |...|     +.+++.+.+++. ....|   ++.       ..+..+..+|...+
T Consensus       383 ~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~  439 (450)
T 2y4t_A          383 DYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLS  439 (450)
T ss_dssp             CSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             hHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence              33333     555667777653 22211   221       25666666666666

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.94  E-value=3e-23  Score=202.92  Aligned_cols=404  Identities=11%  Similarity=0.027  Sum_probs=306.9

Q ss_pred             ChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHH
Q 010994           61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLN  139 (496)
Q Consensus        61 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~  139 (496)
                      ....+..+...+.+.|++++|++.|+.+.+..  |.++..+..+...+.+.|++++|+..|+++....| +..++..+..
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~  101 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS  101 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            34567888999999999999999999999876  35677777888899999999999999999998887 5888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC------CCCCChhh----------
Q 010994          140 CYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK------NIFPDNFS----------  203 (496)
Q Consensus       140 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~----------  203 (496)
                      ++...|++++|...|+.+ ..  .|+.  ....+..+...+....|...++++...      ...|+...          
T Consensus       102 ~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (537)
T 3fp2_A          102 ANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS  176 (537)
T ss_dssp             HHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred             HHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence            999999999999999743 32  1221  112233333444445677777766442      11122211          


Q ss_pred             --------------------HHHHHHHHhh--------cCChHHHHHHHHHhhcCCCCCCC-------HHHHHHHHHHHH
Q 010994          204 --------------------YRICINSYGA--------RSDLEGMEIILREMESQPHIVLD-------WSTYASAAHFYI  248 (496)
Q Consensus       204 --------------------~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~~li~~~~  248 (496)
                                          ...+...+..        .|++++|..+++++. ...+ .+       ..++..+...+.
T Consensus       177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l-~~~p-~~~~~~~~~~~~~~~~g~~~~  254 (537)
T 3fp2_A          177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL-SANT-VDDPLRENAALALCYTGIFHF  254 (537)
T ss_dssp             HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH-C--C-CCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-HHCC-CcchhhHHHHHHHHHHHHHHH
Confidence                                1222222221        247889999999988 5443 23       234666778888


Q ss_pred             hcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHH
Q 010994          249 KANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEK  328 (496)
Q Consensus       249 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  328 (496)
                      ..|++++|...|++.....  |+..+|..+...+...|++++|...++......+ .+...+..+...+...|++++|..
T Consensus       255 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~  331 (537)
T 3fp2_A          255 LKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKE  331 (537)
T ss_dssp             HTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHH
Confidence            9999999999999998765  4477888899999999999999999998887765 567788999999999999999999


Q ss_pred             HHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhh
Q 010994          329 VLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYV  408 (496)
Q Consensus       329 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  408 (496)
                      .++++.+... .+...+..+...|...|++++|...++++.+..+. +...+..+...+...|++++|...|+++++..-
T Consensus       332 ~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          332 DFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             HHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            9999988743 35678888999999999999999999999987644 677899999999999999999999999987332


Q ss_pred             cCCCCCCCHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994          409 EGKGWKPDPKVITSILSKLGDE----------GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK  476 (496)
Q Consensus       409 ~~~~~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~  476 (496)
                      ...........+......+...          |++++|...++...+..|.+...|..+..+|.+.|  ++|.+.|++..
T Consensus       410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  489 (537)
T 3fp2_A          410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSA  489 (537)
T ss_dssp             HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            1222222333345555677777          99999999999998888888999999999999999  79999999988


Q ss_pred             hC
Q 010994          477 AD  478 (496)
Q Consensus       477 ~~  478 (496)
                      +.
T Consensus       490 ~~  491 (537)
T 3fp2_A          490 IL  491 (537)
T ss_dssp             HH
T ss_pred             Hh
Confidence            74

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=3.5e-20  Score=171.05  Aligned_cols=318  Identities=12%  Similarity=0.009  Sum_probs=188.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHh
Q 010994          133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYG  212 (496)
Q Consensus       133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  212 (496)
                      .+..+...+...|++++|...|+++.+... .+..+|..+..++...|++++|...|+++.+.. +.+...+..+..++.
T Consensus         5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            5 KHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence            334444444444444444444444444321 134444444444444444444444444444431 113334444444444


Q ss_pred             hcCChHHHHHHHHHhhcCCCCC--CCHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994          213 ARSDLEGMEIILREMESQPHIV--LDWSTYAS------------AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL  278 (496)
Q Consensus       213 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  278 (496)
                      ..|++++|...++++. .....  .+...+..            +...+...|++++|...++++.+..+ .+...+..+
T Consensus        83 ~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~  160 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVL-KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELR  160 (359)
T ss_dssp             HHTCHHHHHHHHHHHH-TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             HcCChHHHHHHHHHHH-hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence            4555555555554444 22110  01122222            24566677777777777777766443 455666677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHH------------
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPN------------  346 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------  346 (496)
                      ...+...|++++|...++......+ .+...+..+...+...|++++|...++...+.... +...+.            
T Consensus       161 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~  238 (359)
T 3ieg_A          161 AECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLI  238 (359)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHH
Confidence            7777777777777777776666544 45566667777777777777777777777665321 222221            


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTP----NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      .+...+.+.|++++|...++++.+..+. +.    ..+..+...+...|++++|+..++++++      ..+.+...+..
T Consensus       239 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~  311 (359)
T 3ieg_A          239 ESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ------MEPDNVNALKD  311 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCcccHHHHHH
Confidence            2255677788888888888888776533 33    2344567788888888888888888877      22336677888


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIR  463 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  463 (496)
                      +...+...|++++|...++...+..|.+...+..+..+...
T Consensus       312 ~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          312 RAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            88888888888888888888887777777777777665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.90  E-value=4.6e-20  Score=170.30  Aligned_cols=317  Identities=8%  Similarity=-0.044  Sum_probs=217.3

Q ss_pred             ChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHH
Q 010994           61 RVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLN  139 (496)
Q Consensus        61 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~  139 (496)
                      ++..+..+...+.+.|++++|++.|+.+.+..  |.++..+......+...|++++|...|+++....| +...|..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            34567788888999999999999999998865  24566777778888899999999999999888777 5788888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC--CChhHHHHH------------HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHH
Q 010994          140 CYVRQRQTDKALSHFRKMKEMGIA--LSTLTYNDI------------MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYR  205 (496)
Q Consensus       140 ~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  205 (496)
                      .+...|++++|...|++..+....  .+...+..+            ...+...|++++|...++++.+.. +.+...+.
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  158 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRE  158 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHH
Confidence            999999999999999988876320  144444444            466777788888888888777653 23566677


Q ss_pred             HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHH---------
Q 010994          206 ICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYN---------  276 (496)
Q Consensus       206 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---------  276 (496)
                      .+..++...|++++|...++++. ...+ .+..++..+...|...|++++|...|++..+..+ .+...+.         
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~  235 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAAS-KLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLN  235 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH-TTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHH
Confidence            77777778888888888887776 4443 5667777777777888888888888877766433 2222222         


Q ss_pred             ---HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994          277 ---FLISLYASLGNKSEVLRLWDLEKTACKRYIN----RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       277 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (496)
                         .+...+...|++++|...++......+. +.    ..+..+..++...|++++|...++...+.. +.+..++..+.
T Consensus       236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~  313 (359)
T 3ieg_A          236 KLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRA  313 (359)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence               2244566667777777777666655432 22    123345566666677777777776666652 22455666666


Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG  386 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  386 (496)
                      ..|...|++++|...|+++.+..+. +...+..+..+
T Consensus       314 ~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~  349 (359)
T 3ieg_A          314 EAYLIEEMYDEAIQDYEAAQEHNEN-DQQIREGLEKA  349 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCC-ChHHHHHHHHH
Confidence            6666677777777777766665432 34444444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=6e-20  Score=179.44  Aligned_cols=406  Identities=11%  Similarity=-0.010  Sum_probs=296.6

Q ss_pred             CcccHHhhhccCCCCCCCcHHHHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhH
Q 010994           28 NKTTLYSIISPLGNPGTRIEPELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDL  107 (496)
Q Consensus        28 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (496)
                      .+..+-..+...|+...++. .++..... .+.+...+..+...+.+.|++++|++.|+.+.+.+  |.++..+..+..+
T Consensus        27 ~~~~~g~~~~~~g~~~~A~~-~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~  102 (537)
T 3fp2_A           27 QLKNRGNHFFTAKNFNEAIK-YYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHTTCCC-CHH-HHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHH-HHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence            34445556666666555544 55555443 35578899999999999999999999999999876  3456677778889


Q ss_pred             HHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCChh--------------
Q 010994          108 IGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMG------IALSTL--------------  167 (496)
Q Consensus       108 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g------~~p~~~--------------  167 (496)
                      +...|++++|...|+ .....|+.  .+..+..+...+...+|...++.+....      ..|+..              
T Consensus       103 ~~~~g~~~~A~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (537)
T 3fp2_A          103 NESLGNFTDAMFDLS-VLSLNGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE  179 (537)
T ss_dssp             HHHHTCHHHHHHHHH-HHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred             HHHcCCHHHHHHHHH-HHhcCCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence            999999999999997 44334432  2223445555666678888888775431      111111              


Q ss_pred             ----------------HHHHHHHHHHhc--------CCCCcHHHHHHHHHHCCCCCC--------hhhHHHHHHHHhhcC
Q 010994          168 ----------------TYNDIMCLYSKT--------GQYEKVPDVLTEMKAKNIFPD--------NFSYRICINSYGARS  215 (496)
Q Consensus       168 ----------------~~~~l~~~~~~~--------~~~~~a~~~~~~m~~~~~~p~--------~~~~~~li~~~~~~~  215 (496)
                                      ....+...+...        |++++|..+|+++.+..  |+        ..++..+...+...|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~  257 (537)
T 3fp2_A          180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKN  257 (537)
T ss_dssp             HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcc
Confidence                            223333332222        47889999999998753  33        234667778888899


Q ss_pred             ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHH
Q 010994          216 DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLW  295 (496)
Q Consensus       216 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  295 (496)
                      ++++|...+++.. ...  |+...+..+...|...|++++|...|+++.+..+ .+..+|..+...+...|++++|...+
T Consensus       258 ~~~~A~~~~~~~~-~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~  333 (537)
T 3fp2_A          258 NLLDAQVLLQESI-NLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDF  333 (537)
T ss_dssp             CHHHHHHHHHHHH-HHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHH-hcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            9999999999987 443  4578888899999999999999999999887654 56778899999999999999999999


Q ss_pred             HHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-
Q 010994          296 DLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-  374 (496)
Q Consensus       296 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-  374 (496)
                      +......+ .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.+.... 
T Consensus       334 ~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~  411 (537)
T 3fp2_A          334 QKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ  411 (537)
T ss_dssp             HHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence            98887765 556788889999999999999999999998874 335668888999999999999999999998764321 


Q ss_pred             ----CCHhHHHHHHHHHHhc----------CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994          375 ----TTPNSWAVVAAGYFDA----------GKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFV  440 (496)
Q Consensus       375 ----p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  440 (496)
                          .....+......+...          |++++|...|+++++      ..+.+...+..+...+...|++++|.+.|
T Consensus       412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  485 (537)
T 3fp2_A          412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE------LDPRSEQAKIGLAQLKLQMEKIDEAIELF  485 (537)
T ss_dssp             SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence                1222345556777777          999999999999987      23345678888999999999999999999


Q ss_pred             HHHHhcCCCCHHHH
Q 010994          441 AALRTVIPMNRQMY  454 (496)
Q Consensus       441 ~~~~~~~~~~~~~~  454 (496)
                      +...+..|.+....
T Consensus       486 ~~al~~~~~~~~~~  499 (537)
T 3fp2_A          486 EDSAILARTMDEKL  499 (537)
T ss_dssp             HHHHHHC--CHHHH
T ss_pred             HHHHHhCCCcHHHH
Confidence            98888666555443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=6.2e-20  Score=167.35  Aligned_cols=289  Identities=9%  Similarity=-0.025  Sum_probs=178.0

Q ss_pred             ChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHH
Q 010994          165 STLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAA  244 (496)
Q Consensus       165 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li  244 (496)
                      +...+..+...+...|++++|..+|+++.+.. +.+...+..++.++...|++++|..+++++. .... .+...+..+.
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~   97 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLV-DLYP-SNPVSWFAVG   97 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TSTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHH-HhCc-CCHHHHHHHH
Confidence            34444444444455555555555555544432 1123334444445555555555555555554 2221 2344455555


Q ss_pred             HHHHhcC-ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCH
Q 010994          245 HFYIKAN-LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEH  323 (496)
Q Consensus       245 ~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  323 (496)
                      ..+...| ++++|...|++.....+ .+...|..+...+...|++++|...++......+ .+...+..+...+...|++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence            5555555 55555555555544332 3344555556666666666666666665555443 3344555566666666666


Q ss_pred             HHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC--------CCCCHhHHHHHHHHHHhcCChHH
Q 010994          324 EEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG--------KATTPNSWAVVAAGYFDAGKTER  395 (496)
Q Consensus       324 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~~~~~~  395 (496)
                      ++|...++++.+.. +.+...+..+...+...|++++|...++++.+..        ...+..++..+...+...|++++
T Consensus       176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            66666666666553 2245566667777777777777777777766532        12345688888899999999999


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH-HhCC
Q 010994          396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKAN-IRNG  465 (496)
Q Consensus       396 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g  465 (496)
                      |...++++++      -.+.+...+..+...+...|++++|...+++..+..|.+...+..+..++ ...|
T Consensus       255 A~~~~~~a~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g  319 (330)
T 3hym_B          255 ALDYHRQALV------LIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIG  319 (330)
T ss_dssp             HHHHHHHHHH------HSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHh------hCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhC
Confidence            9999999887      22335678888888899999999999999988887788888888888888 4445

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.87  E-value=2.2e-19  Score=163.68  Aligned_cols=291  Identities=9%  Similarity=-0.062  Sum_probs=213.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994          130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICIN  209 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  209 (496)
                      +...+..+...+...|++++|.++|+++.+... .+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   98 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC   98 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence            455666677777777788888887777766532 255566667777777777888887777777652 224566777777


Q ss_pred             HHhhcC-ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH
Q 010994          210 SYGARS-DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNK  288 (496)
Q Consensus       210 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~  288 (496)
                      .+...| ++++|...|++.. .... .+...+..+...+...|++++|...|++..+..+ .+...+..+...+...|++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKAT-TLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHH-TTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHhhhhHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhH
Confidence            777888 7888888888777 4443 4566677788888888888888888888776543 4456677788888888888


Q ss_pred             HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--------CCCcccHHHHHHHHHhcCchhH
Q 010994          289 SEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN--------SYDTRIPNAVIIGYCNNGLVQN  360 (496)
Q Consensus       289 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~  360 (496)
                      ++|...++......+ .+...+..+...+...|++++|...++++.+...        +....++..+...|...|++++
T Consensus       176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            888888887776655 5567777888888888888888888888775421        2335677888888889999999


Q ss_pred             HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHH-hccCCHH
Q 010994          361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKL-GDEGSVQ  434 (496)
Q Consensus       361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~~~  434 (496)
                      |...+++..+.... +...+..+...+...|++++|.+.++++++       +.| +...+..+..++ ...|+.+
T Consensus       255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG-------LRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT-------TCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc-------cCCCchHHHHHHHHHHHHHhCchh
Confidence            99999988877544 677888888999999999999999998875       445 556677777666 4555543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.86  E-value=8.3e-18  Score=163.61  Aligned_cols=407  Identities=8%  Similarity=0.036  Sum_probs=297.9

Q ss_pred             CCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHH
Q 010994           58 NKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGAL  137 (496)
Q Consensus        58 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l  137 (496)
                      .+-+...|..++. +.+.|++++|..+|+.+.+..  |.++..+...+..+.+.|+++.|..+|+++....|+...|..+
T Consensus         9 ~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~   85 (530)
T 2ooe_A            9 NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCY   85 (530)
T ss_dssp             CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred             CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHH
Confidence            4557888999998 478999999999999999975  4566677778888889999999999999999988998888888


Q ss_pred             HHHH-HhcCCHHHHHH----HHHHHHH-CCCCC-ChhHHHHHHHHHHh---------cCCCCcHHHHHHHHHHCCCCCCh
Q 010994          138 LNCY-VRQRQTDKALS----HFRKMKE-MGIAL-STLTYNDIMCLYSK---------TGQYEKVPDVLTEMKAKNIFPDN  201 (496)
Q Consensus       138 i~~~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~  201 (496)
                      +... ...|+.++|.+    +|+.... .|..| +...|...+....+         .|+++.|..+|++..+....+..
T Consensus        86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~  165 (530)
T 2ooe_A           86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIE  165 (530)
T ss_dssp             HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHH
T ss_pred             HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHH
Confidence            7643 45677777665    7776654 35443 56778887776654         68899999999999883111112


Q ss_pred             hhHHHHHHHH-------------hhcCChHHHHHHHHHhh-----cCC---CCCCC--------HHHHHHHHHHHHhc--
Q 010994          202 FSYRICINSY-------------GARSDLEGMEIILREME-----SQP---HIVLD--------WSTYASAAHFYIKA--  250 (496)
Q Consensus       202 ~~~~~li~~~-------------~~~~~~~~a~~~~~~~~-----~~~---~~~~~--------~~~~~~li~~~~~~--  250 (496)
                      ..|.......             .+.++++.|..+++.+.     -+.   .++|+        ...|...+......  
T Consensus       166 ~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~  245 (530)
T 2ooe_A          166 QLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPL  245 (530)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCc
Confidence            3333222211             13456777777766521     021   12343        23454444333222  


Q ss_pred             --CCh----HHHHHHHHHHHHhcccCccchHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhhcCCCCchhH
Q 010994          251 --NLI----DKASDVLKKAEERLEQKDGIGYNFLISLYAS-------LGNKS-------EVLRLWDLEKTACKRYINRDY  310 (496)
Q Consensus       251 --~~~----~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~  310 (496)
                        ++.    ..+..+|++.....+ .+...|...+..+.+       .|+++       +|..+|+.........+...|
T Consensus       246 ~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~  324 (530)
T 2ooe_A          246 RTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLY  324 (530)
T ss_dssp             CCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHH
Confidence              232    477889999887543 567888888888875       79987       899999988763332456788


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc--ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHH-H
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDT--RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG-Y  387 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~  387 (496)
                      ..++..+.+.|++++|..+|+.+.+.  .|+.  ..|..++..+.+.|++++|..+|++..+.... +...|...+.. +
T Consensus       325 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~  401 (530)
T 2ooe_A          325 FAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEY  401 (530)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHH
Confidence            89999999999999999999999986  4442  47888888889999999999999999986432 33334333322 3


Q ss_pred             HhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHh
Q 010994          388 FDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR----QMYHAFIKANIR  463 (496)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~  463 (496)
                      ...|+.++|..+|+++++      ..+-+...+..++..+.+.|+.++|..+|++.....+.++    ..|...+.....
T Consensus       402 ~~~~~~~~A~~~~e~al~------~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~  475 (530)
T 2ooe_A          402 YCSKDKSVAFKIFELGLK------KYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  475 (530)
T ss_dssp             HHTCCHHHHHHHHHHHHH------HHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHH
T ss_pred             HHcCChhHHHHHHHHHHH------HCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            468999999999999998      2233578899999999999999999999998887544343    488888888888


Q ss_pred             CC--CcHHHHHHHHHh
Q 010994          464 NG--KGVDELLDSMKA  477 (496)
Q Consensus       464 ~g--~~a~~~~~~m~~  477 (496)
                      .|  +.+..+++++.+
T Consensus       476 ~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          476 IGDLASILKVEKRRFT  491 (530)
T ss_dssp             SSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            89  678888888776

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.86  E-value=2.4e-17  Score=158.67  Aligned_cols=381  Identities=12%  Similarity=0.010  Sum_probs=308.5

Q ss_pred             CCChhhHHHHHHHHHh----ccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHh----hcCHHHHHHHHHhchhcCCC
Q 010994           59 KVRVGELQRIIRDLRK----RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGR----VHGFLSAESYFSNLKDDEKT  130 (496)
Q Consensus        59 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~  130 (496)
                      .-++..+..+...|..    .+++++|+..|+...+.+    ++.....+...+..    .+++++|..+|++..+.+ +
T Consensus        36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-~  110 (490)
T 2xm6_A           36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-L  110 (490)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-C
T ss_pred             CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-C
Confidence            4466778888888888    899999999999999876    46677777777777    899999999999988753 6


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCChh
Q 010994          131 YQTYGALLNCYVR----QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKNIFPDNF  202 (496)
Q Consensus       131 ~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~  202 (496)
                      ...+..|...|..    .+++++|...|++..+.|   +...+..|...|..    .+++++|.+.|++..+.|   +..
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~  184 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW  184 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence            7778888889988    889999999999998875   67888888888887    789999999999998874   677


Q ss_pred             hHHHHHHHHhh----cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcccCccch
Q 010994          203 SYRICINSYGA----RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK----ANLIDKASDVLKKAEERLEQKDGIG  274 (496)
Q Consensus       203 ~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~  274 (496)
                      .+..+...|..    .++.++|.+.|++.. +.+   +...+..+...|..    .++.++|...|++..+.+   +...
T Consensus       185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a  257 (490)
T 2xm6_A          185 SCNQLGYMYSRGLGVERNDAISAQWYRKSA-TSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIA  257 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHH
T ss_pred             HHHHHHHHHhcCCCCCcCHHHHHHHHHHHH-HCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            88888888887    899999999999987 443   45677778888886    889999999999987754   3556


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCcccH
Q 010994          275 YNFLISLYAS----LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKL-----GEHEEAEKVLKEWELSGNSYDTRIP  345 (496)
Q Consensus       275 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~  345 (496)
                      +..+...|..    .++.++|+..|+.....   .+...+..+...|...     ++.++|...+++..+.+   +...+
T Consensus       258 ~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~  331 (490)
T 2xm6_A          258 QFRLGYILEQGLAGAKEPLKALEWYRKSAEQ---GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ  331 (490)
T ss_dssp             HHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT---TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence            7777788877    89999999999987665   3456777788888877     89999999999999875   44567


Q ss_pred             HHHHHHHHhcC---chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 010994          346 NAVIIGYCNNG---LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD----AGKTERGFQCMKAALSVYVEGKGWKPDPK  418 (496)
Q Consensus       346 ~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~  418 (496)
                      ..+...|...|   +.++|.++|++..+.|   +...+..+...|..    .+++++|.++|+++.+     .+   +..
T Consensus       332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~-----~~---~~~  400 (490)
T 2xm6_A          332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE-----QG---LSA  400 (490)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-----TT---CHH
T ss_pred             HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh-----CC---CHH
Confidence            77888887766   8899999999999874   78889999999998    8999999999999998     33   577


Q ss_pred             HHHHHHHHHhc----cCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhCCCcHHHHHHH
Q 010994          419 VITSILSKLGD----EGSVQDVEAFVAALRTVIP---MNRQMYHAFIKANIRNGKGVDELLDS  474 (496)
Q Consensus       419 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~a~~~~~~  474 (496)
                      .+..+...|..    .++.++|...|++..+..+   .++.....+...+....+.+.+...+
T Consensus       401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~~~~a~~~a~~  463 (490)
T 2xm6_A          401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQLQQAELLSQQ  463 (490)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhHHHHHHHHHHH
Confidence            78888888887    8999999999998877542   24555555544443322333433333

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.86  E-value=1.2e-19  Score=168.15  Aligned_cols=285  Identities=9%  Similarity=-0.016  Sum_probs=195.1

Q ss_pred             cCCCCcHHH-HHHHHHHCCC-CC--ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChH
Q 010994          179 TGQYEKVPD-VLTEMKAKNI-FP--DNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID  254 (496)
Q Consensus       179 ~~~~~~a~~-~~~~m~~~~~-~p--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  254 (496)
                      .|++++|.+ .|++...... .|  +...+..+...+...|++++|...|+++. +..+ .+..++..+..+|...|+++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV-QQDP-KHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH-HSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHCcCHH
Confidence            356666666 5554443211 11  23456666677777777777777777776 4333 45666677777777777777


Q ss_pred             HHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHH--------------HHHHHHhc
Q 010994          255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT--------------MLEALMKL  320 (496)
Q Consensus       255 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--------------l~~~~~~~  320 (496)
                      +|...|+++.+..+ .+..++..+..++...|++++|...++.+....+.........              .+..+...
T Consensus       116 ~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (368)
T 1fch_A          116 LAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD  194 (368)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence            77777777766543 4556677777777777777777777776666554221111111              23333478


Q ss_pred             CCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994          321 GEHEEAEKVLKEWELSGNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC  399 (496)
Q Consensus       321 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  399 (496)
                      |++++|...++++.+..... +..++..+...|.+.|++++|...|+++.+..+. +..+|..+...+...|++++|+..
T Consensus       195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~  273 (368)
T 1fch_A          195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAA  273 (368)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88999999999888764321 4667888888899999999999999998876543 677888899999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----------HHHHHHHHHHHHhCC--C
Q 010994          400 MKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN-----------RQMYHAFIKANIRNG--K  466 (496)
Q Consensus       400 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g--~  466 (496)
                      |+++++      -.+.+...+..+..++.+.|++++|...++++....|.+           ..+|..+..+|...|  +
T Consensus       274 ~~~al~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  347 (368)
T 1fch_A          274 YRRALE------LQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  347 (368)
T ss_dssp             HHHHHH------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHH------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChH
Confidence            999887      223456788888889999999999999998777654444           788999999999988  6


Q ss_pred             cHHHHHH
Q 010994          467 GVDELLD  473 (496)
Q Consensus       467 ~a~~~~~  473 (496)
                      +|..+++
T Consensus       348 ~A~~~~~  354 (368)
T 1fch_A          348 AYGAADA  354 (368)
T ss_dssp             GHHHHHT
T ss_pred             hHHHhHH
Confidence            6766654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=1.1e-19  Score=168.52  Aligned_cols=287  Identities=10%  Similarity=-0.054  Sum_probs=144.5

Q ss_pred             hhcCHHHHHH-HHHhchhcCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994          110 RVHGFLSAES-YFSNLKDDEK-----TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE  183 (496)
Q Consensus       110 ~~~~~~~A~~-~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  183 (496)
                      ..|+++.|.. .|++.....|     +...+..+...+.+.|++++|...|+++.+... .+..+|..+..++...|+++
T Consensus        37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~  115 (368)
T 1fch_A           37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQEL  115 (368)
T ss_dssp             ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHH
Confidence            3466666666 6665544433     234566667777777777777777777766532 35666777777777777777


Q ss_pred             cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHH---------------HHHHHH
Q 010994          184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYAS---------------AAHFYI  248 (496)
Q Consensus       184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------li~~~~  248 (496)
                      +|...|+++.+.. +.+..++..+..++...|++++|...++++. .... .+...+..               .+..+.
T Consensus       116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWL-RYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTST-TTGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            7777777766653 2255666666677777777777777776665 3222 11111111               112222


Q ss_pred             hcCChHHHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHH
Q 010994          249 KANLIDKASDVLKKAEERLEQK-DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAE  327 (496)
Q Consensus       249 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  327 (496)
                      ..|++++|...|+++....+.. +..++..+...+...|++++|...++.+....+ .+...+..+...+...|++++|.
T Consensus       193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHH
Confidence            4555555555555554433211 234455555555555555555555554444432 23344444555555555555555


Q ss_pred             HHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC----------CHhHHHHHHHHHHhcCChHHHH
Q 010994          328 KVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT----------TPNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      ..++++.+.. +.+...+..+...|.+.|++++|...|+++.+..+..          ...+|..+..+|...|+.++|.
T Consensus       272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  350 (368)
T 1fch_A          272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  350 (368)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence            5555544432 1233344444445555555555555554444322110          1344444455555555555444


Q ss_pred             HHHHH
Q 010994          398 QCMKA  402 (496)
Q Consensus       398 ~~~~~  402 (496)
                      .++.+
T Consensus       351 ~~~~~  355 (368)
T 1fch_A          351 AADAR  355 (368)
T ss_dssp             HHHTT
T ss_pred             HhHHH
Confidence            44443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.84  E-value=1.6e-16  Score=152.87  Aligned_cols=365  Identities=10%  Similarity=0.034  Sum_probs=301.3

Q ss_pred             HHHHHHHHHHhCCCCCCCcchhhhhhhHHHh----hcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010994           80 QALEVSDWMNRKGICVFAPCDHAVQLDLIGR----VHGFLSAESYFSNLKDDEKTYQTYGALLNCYVR----QRQTDKAL  151 (496)
Q Consensus        80 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~  151 (496)
                      .+++.+....+.+    ++.....+...+..    .++++.|..+|++..+. .+...+..|...|..    .+++++|.
T Consensus        25 ~~~~~~~~~a~~g----~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~   99 (490)
T 2xm6_A           25 VNLEQLKQKAESG----EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-GYTPAEYVLGLRYMNGEGVPQDYAQAV   99 (490)
T ss_dssp             CCHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            3455666665655    35556666666666    78999999999998875 467888889999998    99999999


Q ss_pred             HHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhh----cCChHHHHHH
Q 010994          152 SHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGA----RSDLEGMEII  223 (496)
Q Consensus       152 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~  223 (496)
                      ..|++..+.|   +...+..|...|..    .+++++|...|++..+.|   +...+..+...|..    .++.++|.+.
T Consensus       100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~  173 (490)
T 2xm6_A          100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW  173 (490)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            9999998875   77888889999988    789999999999998875   56777888888877    7899999999


Q ss_pred             HHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHh----cCCHHHHHHHH
Q 010994          224 LREMESQPHIVLDWSTYASAAHFYIK----ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYAS----LGNKSEVLRLW  295 (496)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~  295 (496)
                      |++.. +.+   +...+..+...|..    .++.++|.+.|++..+.+   +...+..+...|..    .+++++|..+|
T Consensus       174 ~~~a~-~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~  246 (490)
T 2xm6_A          174 YSKAA-EQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLF  246 (490)
T ss_dssp             HHHHH-HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHH-HCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            99987 443   56788888899988    899999999999987754   45677788888876    88999999999


Q ss_pred             HHHHhhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc-----CchhHHHHHHH
Q 010994          296 DLEKTACKRYINRDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN-----GLVQNAEAILE  366 (496)
Q Consensus       296 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~  366 (496)
                      +.....   .+...+..+...|..    .++.++|...|+...+.|   +...+..+...|...     ++.++|..+|+
T Consensus       247 ~~a~~~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~  320 (490)
T 2xm6_A          247 SQSAEQ---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYT  320 (490)
T ss_dssp             HHHHTT---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHH
T ss_pred             HHHHHC---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHH
Confidence            987765   345667778888877    899999999999998765   455677788888877     89999999999


Q ss_pred             HHHhcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHH
Q 010994          367 DLVEKGKATTPNSWAVVAAGYFDAG---KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD----EGSVQDVEAF  439 (496)
Q Consensus       367 ~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~  439 (496)
                      +..+.+   +...+..+...|...|   +.++|+++|+++.+     .   .+...+..+...|..    .+++++|...
T Consensus       321 ~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~-----~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  389 (490)
T 2xm6_A          321 KSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA-----K---GEKAAQFNLGNALLQGKGVKKDEQQAAIW  389 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH-----T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH-----C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            999875   6678888888888866   78999999999998     3   467788888888888    8999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHh----CC--CcHHHHHHHHHhCCCC
Q 010994          440 VAALRTVIPMNRQMYHAFIKANIR----NG--KGVDELLDSMKADGID  481 (496)
Q Consensus       440 ~~~~~~~~~~~~~~~~~l~~~~~~----~g--~~a~~~~~~m~~~g~~  481 (496)
                      |++..+.  .++..+..|...|..    .+  ++|...|++..+.|..
T Consensus       390 ~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          390 MRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            9988763  467888999999987    45  7999999999987643

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=3.4e-19  Score=165.03  Aligned_cols=255  Identities=9%  Similarity=-0.043  Sum_probs=170.2

Q ss_pred             hhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHH
Q 010994          201 NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLIS  280 (496)
Q Consensus       201 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~  280 (496)
                      ...+..+...+.+.|++++|..+|+++. ...+ .+..++..+..+|...|++++|...|+++.+..+ .+..+|..+..
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~  141 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAI-LQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAV  141 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHH-HhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence            3446666677777777777777777766 3332 4566677777777777777777777777766443 44566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcCCC---------CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCcccHHHHHH
Q 010994          281 LYASLGNKSEVLRLWDLEKTACKRY---------INRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YDTRIPNAVII  350 (496)
Q Consensus       281 ~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~  350 (496)
                      +|...|++++|...++.+....+..         ....+..+...+...|++++|...++++.+.... ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            7777777777777777666544310         1122334567777788888888888888776432 14667777888


Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE  430 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  430 (496)
                      .|...|++++|...|+++.+..+. +..+|..+...|...|++++|+..|+++++      -.+.+..++..+..+|...
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALE------IQPGFIRSRYNLGISCINL  294 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHHC
Confidence            888888888888888888776543 677888888888888888888888888876      1223467777788888888


Q ss_pred             CCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhCC
Q 010994          431 GSVQDVEAFVAALRTVIPM------------NRQMYHAFIKANIRNG  465 (496)
Q Consensus       431 g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g  465 (496)
                      |++++|...+++..+..|.            +...|..+..++...|
T Consensus       295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD  341 (365)
T ss_dssp             TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence            8888888888866653221            3567888888888777

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.82  E-value=1.5e-18  Score=160.66  Aligned_cols=270  Identities=10%  Similarity=-0.059  Sum_probs=180.1

Q ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Q 010994          168 TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFY  247 (496)
Q Consensus       168 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~  247 (496)
                      .|..+...+.+.|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++. ..++ .+..++..+..+|
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~l~~~~  143 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCL-ELQP-NNLKALMALAVSY  143 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHH
Confidence            34444555555555555555555554432 1234455555556666666666666665555 3222 3455566666666


Q ss_pred             HhcCChHHHHHHHHHHHHhcccC---------ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-CchhHHHHHHHH
Q 010994          248 IKANLIDKASDVLKKAEERLEQK---------DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY-INRDYITMLEAL  317 (496)
Q Consensus       248 ~~~~~~~~a~~~~~~m~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~  317 (496)
                      ...|++++|...|+++.+..+..         ....+..+...+...|++++|...++.+....+.. +...+..+...+
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            66666666666666665543211         12233445778888889999999998888776521 567888888999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      ...|++++|...++++.+.. +.+..++..+...|...|++++|...|+++.+..+. +..++..+...|...|++++|.
T Consensus       224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999988764 336778899999999999999999999999887544 6888999999999999999999


Q ss_pred             HHHHHHHHhhhcCCCC------CCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994          398 QCMKAALSVYVEGKGW------KPDPKVITSILSKLGDEGSVQDVEAFVAA  442 (496)
Q Consensus       398 ~~~~~~~~~~~~~~~~------~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  442 (496)
                      ..|+++++..-...+.      ..+...+..+..++...|+.+.+..+.+.
T Consensus       302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999998832111110      01357888999999999999999887764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=2.7e-19  Score=162.18  Aligned_cols=281  Identities=11%  Similarity=0.087  Sum_probs=105.2

Q ss_pred             hhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHH
Q 010994          110 RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL  189 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~  189 (496)
                      +.|++++|.++++++..    +.+|..|+.++.+.|++++|++.|.+.      +|..+|..++.++...|++++|...+
T Consensus        15 ~~~~ld~A~~fae~~~~----~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl   84 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNE----PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL   84 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCC----hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            45667777777766632    347777777777777777777777542      46667777777777777777777766


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc
Q 010994          190 TEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ  269 (496)
Q Consensus       190 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  269 (496)
                      +..++.  .+++.+.+.++.+|.+.|+++++.++++        .|+..+|+.+...|...|.+++|...|..+      
T Consensus        85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------  148 (449)
T 1b89_A           85 QMARKK--ARESYVETELIFALAKTNRLAELEEFIN--------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------  148 (449)
T ss_dssp             --------------------------CHHHHTTTTT--------CC----------------CTTTHHHHHHHT------
T ss_pred             HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh------
Confidence            655553  3445667777777777777777665552        155557777777777777777777777754      


Q ss_pred             CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994          270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (496)
                         ..|..++.++.+.|++++|.+.++.+      .++.+|..++.+|...|+++.|......+.     .++.-...++
T Consensus       149 ---~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv  214 (449)
T 1b89_A          149 ---SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELI  214 (449)
T ss_dssp             ---TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHH
T ss_pred             ---hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHH
Confidence               46777777777777777777777755      356777777777777777777754443321     1222244566


Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHhhhcCCCCCC------CHHHHH
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG--KTERGFQCMKAALSVYVEGKGWKP------DPKVIT  421 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p------~~~~~~  421 (496)
                      ..|.+.|++++|..+++...... +-....|+.+..+|++-.  +..+.++.|...       ..++|      +...|.
T Consensus       215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~-------ini~k~~~~~~~~~~w~  286 (449)
T 1b89_A          215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR-------VNIPKVLRAAEQAHLWA  286 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT-------SCHHHHHHHHHTTTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------hcCcHHHHHHHHHHHHH
Confidence            77777777777777777776654 335666777766666542  233333333221       23333      234566


Q ss_pred             HHHHHHhccCCHHHHHH
Q 010994          422 SILSKLGDEGSVQDVEA  438 (496)
Q Consensus       422 ~l~~~~~~~g~~~~a~~  438 (496)
                      .+...|...++++.|..
T Consensus       287 e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          287 ELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhhchHHHHHH
Confidence            66666777777776655

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.81  E-value=4.9e-16  Score=151.12  Aligned_cols=371  Identities=9%  Similarity=-0.034  Sum_probs=271.0

Q ss_pred             CCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHH
Q 010994           96 FAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMC  174 (496)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~  174 (496)
                      .+...+...+. +.+.|+++.|..+|+++....| +...|..++..+.+.|++++|..+|++....  .|+...|...+.
T Consensus        11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~   87 (530)
T 2ooe_A           11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLS   87 (530)
T ss_dssp             TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHH
Confidence            44555555566 3678999999999999999888 6889999999999999999999999999887  368888888775


Q ss_pred             HH-HhcCCCCcHHH----HHHHHHHC-CCCC-ChhhHHHHHHHHhh---------cCChHHHHHHHHHhhcCCCCCCCHH
Q 010994          175 LY-SKTGQYEKVPD----VLTEMKAK-NIFP-DNFSYRICINSYGA---------RSDLEGMEIILREMESQPHIVLDWS  238 (496)
Q Consensus       175 ~~-~~~~~~~~a~~----~~~~m~~~-~~~p-~~~~~~~li~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~  238 (496)
                      .. ...|+.+.|.+    +|++.... |..| +...|...+....+         .|+++.|.++|++.. .........
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al-~~P~~~~~~  166 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC-VNPMINIEQ  166 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT-TSCCTTHHH
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH-hchhhhHHH
Confidence            43 45688888776    77776653 5444 45667777765544         789999999999998 421111123


Q ss_pred             HHHHHHHHH-------------HhcCChHHHHHHHHHHHHh--c-------ccCc--------cchHHHHHHHHHhc---
Q 010994          239 TYASAAHFY-------------IKANLIDKASDVLKKAEER--L-------EQKD--------GIGYNFLISLYASL---  285 (496)
Q Consensus       239 ~~~~li~~~-------------~~~~~~~~a~~~~~~m~~~--~-------~~~~--------~~~~~~l~~~~~~~---  285 (496)
                      .|.......             ...++++.|..++.++...  +       ++|+        ...|...+......   
T Consensus       167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~  246 (530)
T 2ooe_A          167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR  246 (530)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence            333222211             1245667777777663211  1       1222        13455554433222   


Q ss_pred             -CCH----HHHHHHHHHHHhhcCCCCchhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHhcCCCCCcccHH
Q 010994          286 -GNK----SEVLRLWDLEKTACKRYINRDYITMLEALMK-------LGEHE-------EAEKVLKEWELSGNSYDTRIPN  346 (496)
Q Consensus       286 -~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~  346 (496)
                       ++.    ..+..+|+......+ .+...|...+..+.+       .|+++       +|..++++..+.-.+.+...|.
T Consensus       247 ~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~  325 (530)
T 2ooe_A          247 TEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF  325 (530)
T ss_dssp             CSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence             232    477888998888765 567788888887775       79987       8999999998632233577888


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCH-hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTP-NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSIL  424 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~  424 (496)
                      .++..+.+.|++++|..+|+++.+..+. +. ..|..++..+.+.|+.++|..+|+++++       ..| +...+....
T Consensus       326 ~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~-------~~~~~~~~~~~~a  397 (530)
T 2ooe_A          326 AYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKARE-------DARTRHHVYVTAA  397 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------CTTCCTHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHh-------ccCCchHHHHHHH
Confidence            9999999999999999999999986432 33 5899999999999999999999999987       233 333333332


Q ss_pred             HH-HhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCC
Q 010994          425 SK-LGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADG  479 (496)
Q Consensus       425 ~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g  479 (496)
                      .. +...|+.++|..+|+...+..|.++..|..++..+.+.|  ++|..+|++....+
T Consensus       398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            22 335899999999999888878889999999999999999  79999999998864

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.80  E-value=3.9e-16  Score=149.79  Aligned_cols=391  Identities=11%  Similarity=-0.010  Sum_probs=241.8

Q ss_pred             CCCChhhHHHHHHHHHhccChhHHHHHHHHHHhC----CCC---CCCcchhhhhhhHHHhhcCHHHHHHHHHhchhc---
Q 010994           58 NKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRK----GIC---VFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDD---  127 (496)
Q Consensus        58 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---  127 (496)
                      .......|+.|...+...|++++|++.|+...+.    ...   +....++..+..++...|++++|...++++...   
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3344567899999999999999999999987652    101   111223445667778889999988888876543   


Q ss_pred             -----CC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCChhHHHHHHHH---HHhcCCCCcHHHHHHHHHHCC
Q 010994          128 -----EK-TYQTYGALLNCYVRQ--RQTDKALSHFRKMKEMGIALSTLTYNDIMCL---YSKTGQYEKVPDVLTEMKAKN  196 (496)
Q Consensus       128 -----~~-~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~---~~~~~~~~~a~~~~~~m~~~~  196 (496)
                           .+ ...++..+..++.+.  +++++|...|++..+.... +...+..+..+   +...++.++|++.+++..+..
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~  205 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN  205 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence                 12 255666666555554  4688899999888776322 45555555444   345577788888888887753


Q ss_pred             CCCChhhHHHHHHHHhh----cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc
Q 010994          197 IFPDNFSYRICINSYGA----RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG  272 (496)
Q Consensus       197 ~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  272 (496)
                       +.+...+..+...+..    .|+.++|.+.+++.. ..+. .+..++..+...|...|++++|...+++..+..+ .+.
T Consensus       206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al-~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~  281 (472)
T 4g1t_A          206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL-EKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNA  281 (472)
T ss_dssp             -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHH-HHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCH
T ss_pred             -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-HhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChH
Confidence             2244555555544443    456778888888776 4443 5667778888888888888888888888877543 445


Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994          273 IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY  352 (496)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (496)
                      .++..+..+|...+....+.         .. .      .........+..+.|...++...+.. +.+...+..+...|
T Consensus       282 ~~~~~lg~~y~~~~~~~~~~---------~~-~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~  344 (472)
T 4g1t_A          282 YLHCQIGCCYRAKVFQVMNL---------RE-N------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLH  344 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhH---------HH-H------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHH
Confidence            56666665553321111000         00 0      00111112234678888888888764 34677888999999


Q ss_pred             HhcCchhHHHHHHHHHHhcCCCCCHh--HHHHHHH-HHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994          353 CNNGLVQNAEAILEDLVEKGKATTPN--SWAVVAA-GYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD  429 (496)
Q Consensus       353 ~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  429 (496)
                      ...|++++|...|++..+....|...  .+..+.. .....|+.++|+..|+++++       +.|+......       
T Consensus       345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~-------i~~~~~~~~~-------  410 (472)
T 4g1t_A          345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK-------INQKSREKEK-------  410 (472)
T ss_dssp             HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH-------SCCCCHHHHH-------
T ss_pred             HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCcccHHHHH-------
Confidence            99999999999999998865443221  2233332 34578999999999999997       6666543322       


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCC-CCCChhH
Q 010994          430 EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADG-IDEDEET  486 (496)
Q Consensus       430 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g-~~p~~~t  486 (496)
                        ....+.++++......|.++.+|..++.+|...|  ++|++.|++..+.| ..|+..+
T Consensus       411 --~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          411 --MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS  468 (472)
T ss_dssp             --HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred             --HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence              2344556666666668889999999999999999  89999999988754 2344443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=1.4e-17  Score=151.47  Aligned_cols=283  Identities=10%  Similarity=-0.082  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINS  210 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  210 (496)
                      ...+..+...+...|++++|..+|+++.+... .+...|..+..++...|++++|...|+++.+.. +.+..++..+..+
T Consensus        21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   98 (327)
T 3cv0_A           21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS   98 (327)
T ss_dssp             SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence            34455666666777777777777777665432 255566666666666666666666666665542 2244555555556


Q ss_pred             HhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHH-HH-HHHhcCCH
Q 010994          211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL-IS-LYASLGNK  288 (496)
Q Consensus       211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-~~-~~~~~~~~  288 (496)
                      +...|++++|.+.++++. .... .+...+..+...                      .|+......+ .. .+...|++
T Consensus        99 ~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~  154 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWL-LSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY  154 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHH-HTST-TTTTC------------------------------------------CCTTSHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH-HhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence            666666666666665555 2221 111111111000                      0111111111 12 25566777


Q ss_pred             HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHH
Q 010994          289 SEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDL  368 (496)
Q Consensus       289 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  368 (496)
                      ++|...++.+....+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus       155 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  232 (327)
T 3cv0_A          155 RECRTLLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRA  232 (327)
T ss_dssp             HHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777777777666554 455667777777777788888888887777653 234566777888888888888888888888


Q ss_pred             HhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC------CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994          369 VEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP------DPKVITSILSKLGDEGSVQDVEAFVAA  442 (496)
Q Consensus       369 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~  442 (496)
                      .+..+. +...+..+...+...|++++|.+.+++++...-...+...      +...+..+..++.+.|++++|..+++.
T Consensus       233 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          233 LDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            776543 6778888888888888888888888888772100000000      356777888888888888888888763

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.80  E-value=1.8e-17  Score=150.74  Aligned_cols=260  Identities=12%  Similarity=-0.045  Sum_probs=192.4

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994          203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLY  282 (496)
Q Consensus       203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~  282 (496)
                      .+..+...+...|++++|..+|+++. +... .+...+..+..++...|++++|...++++.+..+ .+..++..+...+
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~   99 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVC-QAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH   99 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence            34555566666666666666666665 3322 3555666666666667777777777766665432 3455666666667


Q ss_pred             HhcCCHHHHHHHHHHHHhhcCCCCchhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH
Q 010994          283 ASLGNKSEVLRLWDLEKTACKRYINRDYITM--------------LE-ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNA  347 (496)
Q Consensus       283 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  347 (496)
                      ...|++++|...++......+ .+...+..+              .. .+...|++++|...++++.+... .+...+..
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~  177 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNP-NDAQLHAS  177 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHST-TCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCC-CCHHHHHH
Confidence            777777777777766655443 222222222              22 36778899999999999988743 36778899


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994          348 VIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL  427 (496)
Q Consensus       348 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~  427 (496)
                      +...|...|++++|...++++.+..+. +..++..+...+...|++++|...++++++      ..+.+...+..+...+
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~  250 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALD------INPGYVRVMYNMAVSY  250 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------cCCCCHHHHHHHHHHH
Confidence            999999999999999999999987644 688999999999999999999999999987      2334678899999999


Q ss_pred             hccCCHHHHHHHHHHHHhcCCC------------CHHHHHHHHHHHHhCC--CcHHHHHHH
Q 010994          428 GDEGSVQDVEAFVAALRTVIPM------------NRQMYHAFIKANIRNG--KGVDELLDS  474 (496)
Q Consensus       428 ~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g--~~a~~~~~~  474 (496)
                      ...|++++|.+.++++....|.            +...|..+..++.+.|  ++|..++++
T Consensus       251 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  311 (327)
T 3cv0_A          251 SNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ  311 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred             HHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            9999999999999988776555            6789999999999999  677777654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.79  E-value=8.5e-16  Score=147.39  Aligned_cols=348  Identities=9%  Similarity=-0.093  Sum_probs=190.7

Q ss_pred             CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCC---CCC---CcchhhhhhhHHHh--hcCHHHHHHHHHhchhcCCC-
Q 010994           60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGI---CVF---APCDHAVQLDLIGR--VHGFLSAESYFSNLKDDEKT-  130 (496)
Q Consensus        60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~-  130 (496)
                      ....+|+.+...|...|++++|+..++...+...   .+.   .+..+......+..  .+++++|+..|+++.+.+|+ 
T Consensus        92 ~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~  171 (472)
T 4g1t_A           92 RSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN  171 (472)
T ss_dssp             TTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCC
Confidence            3456789999999999999999999998875321   111   22333333333443  35699999999999998884 


Q ss_pred             HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCChhh
Q 010994          131 YQTYGALLNC---YVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKNIFPDNFS  203 (496)
Q Consensus       131 ~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~  203 (496)
                      +..+..+..+   +...++.++|++.+++..+.+. .+..++..+...+..    .|++++|...+++..... +.+..+
T Consensus       172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~  249 (472)
T 4g1t_A          172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDV  249 (472)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHH
T ss_pred             HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHH
Confidence            6666666555   4456788899999999887643 366677666665554    467889999999988763 346678


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHH
Q 010994          204 YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYA  283 (496)
Q Consensus       204 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~  283 (496)
                      +..+...+...|++++|...+++.. +..+ .+..++..+..+|...+....+.                ..........
T Consensus       250 ~~~lg~~~~~~~~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~y~~~~~~~~~~----------------~~~~~~~~~~  311 (472)
T 4g1t_A          250 LRSAAKFYRRKDEPDKAIELLKKAL-EYIP-NNAYLHCQIGCCYRAKVFQVMNL----------------RENGMYGKRK  311 (472)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHST-TCHHHHHHHHHHHHHHHHHHHHC----------------------CHHH
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHH-HhCC-ChHHHHHHHHHHHHHHHHHhhhH----------------HHHHHHHHHH
Confidence            8899999999999999999999987 4443 46677777777664321110000                0000000011


Q ss_pred             hcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc--cHHHHHH-HHHhcCchhH
Q 010994          284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR--IPNAVII-GYCNNGLVQN  360 (496)
Q Consensus       284 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~  360 (496)
                      ..+..+.|...++......+ .+...+..+...+...|++++|...|++..+....+...  .+..+.. .+...|+.++
T Consensus       312 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (472)
T 4g1t_A          312 LLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDK  390 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred             HHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHH
Confidence            11223445555554444433 334445555555555555555555555555442221110  1111111 1234455555


Q ss_pred             HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994          361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFV  440 (496)
Q Consensus       361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  440 (496)
                      |+..|.+..+..  |+.....         +..+.+..++++.+.      .-+.+..++..+..++...|++++|.+.|
T Consensus       391 Ai~~y~kal~i~--~~~~~~~---------~~~~~l~~~~~~~l~------~~p~~~~~~~~LG~~~~~~g~~~~A~~~y  453 (472)
T 4g1t_A          391 AIHHFIEGVKIN--QKSREKE---------KMKDKLQKIAKMRLS------KNGADSEALHVLAFLQELNEKMQQADEDS  453 (472)
T ss_dssp             HHHHHHHHHHSC--CCCHHHH---------HHHHHHHHHHHHHHH------HCC-CTTHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHhcC--cccHHHH---------HHHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            555555555432  2221111         111223333444433      12223445555555555555556666555


Q ss_pred             HHHHh
Q 010994          441 AALRT  445 (496)
Q Consensus       441 ~~~~~  445 (496)
                      ++..+
T Consensus       454 ~kALe  458 (472)
T 4g1t_A          454 ERGLE  458 (472)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            55444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=6.6e-17  Score=143.65  Aligned_cols=261  Identities=15%  Similarity=0.089  Sum_probs=188.1

Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHCCCCCCh--hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010994          173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDN--FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA  250 (496)
Q Consensus       173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  250 (496)
                      ++-....|+++.|+..++....  ..|+.  .....+.++|...|+++.|+..++.    . -+|+..++..+...+...
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~-~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----S-SAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----T-SCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----c-CChhHHHHHHHHHHHcCC
Confidence            3445567888888887776543  23332  3445667888888888888865533    2 236777788888888888


Q ss_pred             CChHHHHHHHHHHHHhcccC-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994          251 NLIDKASDVLKKAEERLEQK-DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV  329 (496)
Q Consensus       251 ~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  329 (496)
                      ++.++|++.++++...+..| +...+..+...+...|++++|++.++.      ..+...+..++..+.+.|++++|...
T Consensus        79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~  152 (291)
T 3mkr_A           79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE  152 (291)
T ss_dssp             TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            88888888888887655334 445566677888888888888888875      25667788888888888888888888


Q ss_pred             HHHHHhcCCCCCcccH---HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Q 010994          330 LKEWELSGNSYDTRIP---NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSV  406 (496)
Q Consensus       330 ~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  406 (496)
                      ++.+.+..  |+....   ...+..+...|++++|..+|+++.+..+ .+...++.+..++.+.|++++|...+++++. 
T Consensus       153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~-  228 (291)
T 3mkr_A          153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALD-  228 (291)
T ss_dssp             HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Confidence            88888763  443211   1233444455888888888888887744 3778888888888888888888888888887 


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhcCCCCHHHHH
Q 010994          407 YVEGKGWKPDPKVITSILSKLGDEGSVQD-VEAFVAALRTVIPMNRQMYH  455 (496)
Q Consensus       407 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~  455 (496)
                           ..+-+..++..++..+...|+.++ +.++++++.+..|.++.+..
T Consensus       229 -----~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          229 -----KDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             -----HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             -----hCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence                 223356778888888888888865 56788888777777665543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=5.4e-17  Score=144.19  Aligned_cols=271  Identities=14%  Similarity=0.068  Sum_probs=146.4

Q ss_pred             HHHhhcCHHHHHHHHHhchhcCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCc
Q 010994          107 LIGRVHGFLSAESYFSNLKDDEKTY--QTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEK  184 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~  184 (496)
                      -....|+++.|+..++......|+.  ...-.+..+|...|++++|+..++.    .-+|+..++..+...+...++.++
T Consensus         8 ~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~   83 (291)
T 3mkr_A            8 NAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDA   83 (291)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHH
Confidence            3344555566665555544444432  2334455666666666666654433    123455556666666666666666


Q ss_pred             HHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          185 VPDVLTEMKAKNIFPD-NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       185 a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      |.+.++++...+..|+ ...+..+..++...|++++|++.+++       +.+...+..++..|.+.|++++|.+.|+++
T Consensus        84 A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            6666666665544343 33344444566666666666666544       245556666666666666666666666666


Q ss_pred             HHhcccCccchHHHH----HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010994          264 EERLEQKDGIGYNFL----ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS  339 (496)
Q Consensus       264 ~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  339 (496)
                      .+..  |+.. ...+    +..+...|++++|..+|+++....+ .+...++.+..++.+.|++++|...++++.+.. +
T Consensus       157 ~~~~--p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p  231 (291)
T 3mkr_A          157 QDQD--EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-S  231 (291)
T ss_dssp             HHHC--TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred             HhhC--cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence            5543  3321 1122    2223334666666666666665544 455566666666666666666666666666553 2


Q ss_pred             CCcccHHHHHHHHHhcCchhH-HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHH
Q 010994          340 YDTRIPNAVIIGYCNNGLVQN-AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQ  398 (496)
Q Consensus       340 ~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~  398 (496)
                      .+..++..++..+...|+.++ +.++++++.+.++. ++.    +.....+.+.++++..
T Consensus       232 ~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~-~~~----~~d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          232 GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS-HPF----IKEYRAKENDFDRLVL  286 (291)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHH----HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC-ChH----HHHHHHHHHHHHHHHH
Confidence            244556666666666666654 45566666654432 222    2233444455555444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1.7e-17  Score=150.45  Aligned_cols=266  Identities=7%  Similarity=-0.000  Sum_probs=134.3

Q ss_pred             hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHH
Q 010994           62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCY  141 (496)
Q Consensus        62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~  141 (496)
                      +..|..|..++.+.|++++|++.|...       .++..+..++..+...|++++|+.+++...+..+++.+.+.++.+|
T Consensus        32 ~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y  104 (449)
T 1b89_A           32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL  104 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHHHH
Confidence            359999999999999999999999653       3566888888999999999999999998887767788899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHH
Q 010994          142 VRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME  221 (496)
Q Consensus       142 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~  221 (496)
                      .+.|+++++.++++       .|+..+|+.+...|...|.+++|...|..+         ..|..++.++.+.|++++|.
T Consensus       105 ~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AV  168 (449)
T 1b89_A          105 AKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV  168 (449)
T ss_dssp             ----CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHH
T ss_pred             HHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHH
Confidence            99999999998884       378889999999999999999999999977         36999999999999999999


Q ss_pred             HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010994          222 IILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTA  301 (496)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  301 (496)
                      +.++++       .+..+|..++.+|...|+++.|......+.     .++.-...++..|.+.|++++|..+++.....
T Consensus       169 ea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~l  236 (449)
T 1b89_A          169 DGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGL  236 (449)
T ss_dssp             HHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            999998       357889999999999999999966655422     22233456889999999999999999977765


Q ss_pred             cCCCCchhHHHHHHHHHhc--CCHHHHHHHHHHHHhcCCCC------CcccHHHHHHHHHhcCchhHHHHHH
Q 010994          302 CKRYINRDYITMLEALMKL--GEHEEAEKVLKEWELSGNSY------DTRIPNAVIIGYCNNGLVQNAEAIL  365 (496)
Q Consensus       302 ~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~  365 (496)
                      . +.....|+-+.-+|++-  +++.+..+.|..  +.+++|      +...|..+...|...++++.|....
T Consensus       237 e-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm  305 (449)
T 1b89_A          237 E-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM  305 (449)
T ss_dssp             T-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             c-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            5 35567788777777764  334444444431  112222      5788999999999999999988743

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.77  E-value=2.4e-19  Score=175.38  Aligned_cols=152  Identities=13%  Similarity=0.137  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHH
Q 010994           63 GELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYV  142 (496)
Q Consensus        63 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~  142 (496)
                      .+|++||++||+.|+.++|.++|+.|.+...                               ....||+.+||+||++|+
T Consensus       128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~-------------------------------kG~~PdvvTYNtLI~Glc  176 (1134)
T 3spa_A          128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQ-------------------------------KRKLLTLDMYNAVMLGWA  176 (1134)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHH-------------------------------HHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhh-------------------------------cCCCCCHhHHHHHHHHHH
Confidence            3677777777777777777777766654310                               011489999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC-CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHH
Q 010994          143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY-EKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME  221 (496)
Q Consensus       143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~  221 (496)
                      +.|++++|.++|++|.+.|+.||..|||++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.    .++
T Consensus       177 k~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL  252 (1134)
T 3spa_A          177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVL  252 (1134)
T ss_dssp             HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHH
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHH
Confidence            9999999999999999999999999999999999999986 68999999999999999999999998766654    444


Q ss_pred             HHHHHhhcCCCCCCC------HHHHHHHHHHHHhcC
Q 010994          222 IILREMESQPHIVLD------WSTYASAAHFYIKAN  251 (496)
Q Consensus       222 ~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~  251 (496)
                      +.++++.  .++.|+      ..+...|.+.|.+.+
T Consensus       253 ~~Vrkv~--P~f~p~~~~~~~~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          253 KAVHKVK--PTFSLPPQLPPPVNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             HHHGGGC--CCCCCCCCCCCCCCCCTTTHHHHCCCS
T ss_pred             HHHHHhC--cccCCCCCCcccccchHHHHHHHccCC
Confidence            4455553  233332      455556777777655

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.76  E-value=4.8e-19  Score=173.35  Aligned_cols=150  Identities=20%  Similarity=0.181  Sum_probs=125.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHH
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFRKMKE---MGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRIC  207 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  207 (496)
                      ..+||+||++|++.|++++|.++|++|.+   .|+.||+.|||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            56899999999999999999999988764   589999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCCh-HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc------cchHHHHHH
Q 010994          208 INSYGARSDL-EGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD------GIGYNFLIS  280 (496)
Q Consensus       208 i~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~l~~  280 (496)
                      |.++++.|+. ++|.++|++|. +.|+.||..+|+.++..+.+.+    +++..+++.. +..|+      ..+...+.+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv~P-~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRAT----VLKAVHKVKP-TFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHHH----HHHHHGGGCC-CCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHHH----HHHHHHHhCc-ccCCCCCCcccccchHHHHH
Confidence            9999999985 78999999999 8999999999999987665543    3333333311 22332      445556666


Q ss_pred             HHHhcC
Q 010994          281 LYASLG  286 (496)
Q Consensus       281 ~~~~~~  286 (496)
                      .|.+.+
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            666554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.76  E-value=2.5e-14  Score=144.87  Aligned_cols=359  Identities=10%  Similarity=0.037  Sum_probs=265.2

Q ss_pred             cHHHHHHHHHc---CCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCC-CCCCcchhhhhhhHHHhhcCHHHHHHHH
Q 010994           46 IEPELDNWVKN---GNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGI-CVFAPCDHAVQLDLIGRVHGFLSAESYF  121 (496)
Q Consensus        46 ~~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~  121 (496)
                      .++-+-.|...   ....++......+++|...|.+.+|+++++.+...+. ++-+++.-..++....+. +......+.
T Consensus       966 ~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI 1044 (1630)
T 1xi4_A          966 YRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYI 1044 (1630)
T ss_pred             HHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHH
Confidence            34445555433   3456777788899999999999999999999995531 112233333344444444 334444444


Q ss_pred             HhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCCh
Q 010994          122 SNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDN  201 (496)
Q Consensus       122 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~  201 (496)
                      +....     .....+...+...|.+++|..+|++...     .....+.++.   ..+++++|.++.++.      -+.
T Consensus      1045 ~kLd~-----~d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aerv------n~p 1105 (1630)
T 1xi4_A         1045 NRLDN-----YDAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERC------NEP 1105 (1630)
T ss_pred             HHhhh-----ccHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhc------CCH
Confidence            44332     1134467788889999999999988531     3333344433   667888888888755      246


Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHH
Q 010994          202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL  281 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  281 (496)
                      .+|..+..++...|++++|+..|.+.       .|...|..++.++.+.|++++|.+.|....+..  +++...+.++.+
T Consensus      1106 ~vWsqLAKAql~~G~~kEAIdsYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~Lafa 1176 (1630)
T 1xi4_A         1106 AVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 1176 (1630)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHH
Confidence            78889999999999999999998664       456778889999999999999999998876654  333344458889


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994          282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA  361 (496)
Q Consensus       282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  361 (496)
                      |++.+++++...+.+       .++...+..+...|...|++++|..+|..+         ..|..+...|++.|+++.|
T Consensus      1177 YAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A         1177 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAA 1240 (1630)
T ss_pred             HHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHH
Confidence            999988886444421       245567778999999999999999999885         3788899999999999999


Q ss_pred             HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994          362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA  441 (496)
Q Consensus       362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  441 (496)
                      .+.+++..      +..+|..+..+|...|++..|..+....          ..+...+..++..|.+.|.+++|..+++
T Consensus      1241 IEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I----------iv~~deLeeli~yYe~~G~feEAI~LlE 1304 (1630)
T 1xi4_A         1241 VDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI----------VVHADELEELINYYQDRGYFEELITMLE 1304 (1630)
T ss_pred             HHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh----------hcCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99998772      6688999999999999988888776542          3456667788999999999999999998


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          442 ALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       442 ~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      ......+.....|+-|...|.+..
T Consensus      1305 ~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1305 AALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHhccChhHhHHHHHHHHHHHhCC
Confidence            777666677778888999999888

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.74  E-value=8.5e-16  Score=134.44  Aligned_cols=223  Identities=12%  Similarity=0.038  Sum_probs=116.4

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC--c----cchHH
Q 010994          203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK--D----GIGYN  276 (496)
Q Consensus       203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~----~~~~~  276 (496)
                      .+..+...+...|++++|...|++.. +..  .+..++..+..+|...|++++|...+++..+..+..  +    ..+|.
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~-~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAW-ELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH-Hhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            34445555555555555555555554 222  444455555555555555555555555554432211  1    34455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 010994          277 FLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG  356 (496)
Q Consensus       277 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  356 (496)
                      .+...+...|++++|...|+......+.         ...+...|++++|...++.+.... +.+...+..+...+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~---------~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEHRT---------ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCch---------hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhc
Confidence            5555555555555555555555443321         123444455555555555555442 123344555555555666


Q ss_pred             chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010994          357 LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDV  436 (496)
Q Consensus       357 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a  436 (496)
                      ++++|...++++.+..+. +...|..+...+...|++++|+..++++++      -.+.+...+..+...+...|++++|
T Consensus       154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE------KDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            666666666665554433 455555566666666666666666666655      1122345555555566666666666


Q ss_pred             HHHHHHHHh
Q 010994          437 EAFVAALRT  445 (496)
Q Consensus       437 ~~~~~~~~~  445 (496)
                      ...++...+
T Consensus       227 ~~~~~~a~~  235 (258)
T 3uq3_A          227 LETLDAART  235 (258)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666655544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.74  E-value=4.4e-14  Score=143.20  Aligned_cols=345  Identities=10%  Similarity=0.083  Sum_probs=243.4

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHH-hhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcC
Q 010994           67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIG-RVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQR  145 (496)
Q Consensus        67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g  145 (496)
                      .+...+...|.+++|.++|+....          ....+..+. ..++++.|.++.+++.    +..+|..+..++.+.|
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~----------~~~A~~VLie~i~nldrAiE~Aervn----~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDV----------NTSAVQVLIEHIGNLDRAYEFAERCN----EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCC----------HHHHHHHHHHHHhhHHHHHHHHHhcC----CHHHHHHHHHHHHhCC
Confidence            345566677777888777777521          111122222 6777888877777553    3678888888888888


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 010994          146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILR  225 (496)
Q Consensus       146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~  225 (496)
                      ++++|++.|.+.      -|...|..++.++.+.|++++|.+.|...++..  +++...+.++.+|++.+++++...+. 
T Consensus      1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A         1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred             CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence            888888888553      377888888888888888888888888777654  33333445888888888887544332 


Q ss_pred             HhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC
Q 010994          226 EMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY  305 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  305 (496)
                        .     .++...|..+...|...|++++|..+|...         ..|..+..++.+.|++++|.+.+++.      .
T Consensus      1191 --~-----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~ 1248 (1630)
T 1xi4_A         1191 --N-----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------N 1248 (1630)
T ss_pred             --h-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------C
Confidence              1     145556667888888888899988888873         37888888888888888888888855      4


Q ss_pred             CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHH
Q 010994          306 INRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAA  385 (496)
Q Consensus       306 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~  385 (496)
                      +..+|..+..+|...|++..|......+     ..++..+..++..|.+.|.+++|+.+++.....+ +-....|+.+..
T Consensus      1249 n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELai 1322 (1630)
T 1xi4_A         1249 STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI 1322 (1630)
T ss_pred             CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHH
Confidence            5578888888888888888888766543     2355566788899999999999999998887665 225567777777


Q ss_pred             HHHhc--CChHHHHHHHHHHHHhhhcCCCCCC------CHHHHHHHHHHHhccCCHHHHHH--------HHH--HHHh--
Q 010994          386 GYFDA--GKTERGFQCMKAALSVYVEGKGWKP------DPKVITSILSKLGDEGSVQDVEA--------FVA--ALRT--  445 (496)
Q Consensus       386 ~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~--------~~~--~~~~--  445 (496)
                      .|++.  ++..+++++|..-.       .++|      +...|..++..|.+.|+++.|..        .|+  .+++  
T Consensus      1323 LyaKy~peklmEhlk~f~~ri-------ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i 1395 (1630)
T 1xi4_A         1323 LYSKFKPQKMREHLELFWSRV-------NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII 1395 (1630)
T ss_pred             HHHhCCHHHHHHHHHHHHHhc-------ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh
Confidence            77764  34555666665533       3444      45678889999999999999883        222  1111  


Q ss_pred             cCCCCHHHHHHHHHHHHhCCCcHH
Q 010994          446 VIPMNRQMYHAFIKANIRNGKGVD  469 (496)
Q Consensus       446 ~~~~~~~~~~~l~~~~~~~g~~a~  469 (496)
                      ....|+..|...+.-|......++
T Consensus      1396 ~kv~n~elyykai~Fyl~~~P~~l 1419 (1630)
T 1xi4_A         1396 TKVANVELYYRAIQFYLEFKPLLL 1419 (1630)
T ss_pred             cccccHHHHHHHHHHHHhhChHHH
Confidence            134677777777777776553333

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=2e-15  Score=132.02  Aligned_cols=238  Identities=13%  Similarity=0.014  Sum_probs=202.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC--C----chhH
Q 010994          237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY--I----NRDY  310 (496)
Q Consensus       237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~  310 (496)
                      ...+..+...+...|++++|...|++..+..  .+..+|..+..++...|++++|...++......+..  +    ...+
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence            4567888999999999999999999998876  788899999999999999999999999887765422  1    4778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA  390 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  390 (496)
                      ..+...+...|++++|...++++.+..  |+       ...+...|++++|...++++....+. +...+..+...+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RT-------ADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--ch-------hHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence            899999999999999999999999863  33       34577789999999999999986543 567889999999999


Q ss_pred             CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcH
Q 010994          391 GKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGV  468 (496)
Q Consensus       391 ~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a  468 (496)
                      |++++|+..+++++.      ..+.+...+..+...+...|++++|...++...+..|.+...|..+..+|...|  ++|
T Consensus       153 ~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIK------RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             TCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cCHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHH
Confidence            999999999999997      234467889999999999999999999999998888889999999999999999  799


Q ss_pred             HHHHHHHHhCC----CCCChhHHHHHHh
Q 010994          469 DELLDSMKADG----IDEDEETKEILVC  492 (496)
Q Consensus       469 ~~~~~~m~~~g----~~p~~~t~~~l~~  492 (496)
                      ...+++..+..    ..|+......++.
T Consensus       227 ~~~~~~a~~~~~~~~~~p~~~~~~~~l~  254 (258)
T 3uq3_A          227 LETLDAARTKDAEVNNGSSAREIDQLYY  254 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence            99998887632    2266655444443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.71  E-value=5.3e-15  Score=140.14  Aligned_cols=371  Identities=13%  Similarity=0.054  Sum_probs=249.0

Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCH---HHHHHHHHhchhcCCCHHHHHHHHHHHH
Q 010994           66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGF---LSAESYFSNLKDDEKTYQTYGALLNCYV  142 (496)
Q Consensus        66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~li~~~~  142 (496)
                      ..+...+.+.|++++|+++|+...+.+    ++.....+..++...|+.   ++|..+|++..+.  ++..+..|...+.
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHHHHH
Confidence            346677889999999999999998876    366666666677777877   9999999998875  6667777777566


Q ss_pred             hcC-----CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCC---CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc
Q 010994          143 RQR-----QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQY---EKVPDVLTEMKAKNIFPDNFSYRICINSYGAR  214 (496)
Q Consensus       143 ~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  214 (496)
                      ..+     ++++|...|++..+.|.   ...+..|...|...+..   .++.+.+......|   +......+...|...
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~  154 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ  154 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence            655     78999999999988764   34777788888776654   44566666665544   345666777778777


Q ss_pred             CCh----HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhc--
Q 010994          215 SDL----EGMEIILREMESQPHIVLDWSTYASAAHFYIKAN---LIDKASDVLKKAEERLEQKDGIGYNFLISLYASL--  285 (496)
Q Consensus       215 ~~~----~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~--  285 (496)
                      +.+    +.+..+++... ..+  |+  .+..+...|...|   +.++|++.|++..+.+. ++...+..+...|...  
T Consensus       155 ~~~~~~~~~a~~~~~~a~-~~~--~~--a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~  228 (452)
T 3e4b_A          155 GTYDQHLDDVERICKAAL-NTT--DI--CYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATL  228 (452)
T ss_dssp             TCGGGGHHHHHHHHHHHT-TTC--TT--HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGG
T ss_pred             CCcccCHHHHHHHHHHHH-cCC--HH--HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence            754    44555555554 322  33  7778999999999   99999999999988775 5555557777777655  


Q ss_pred             --CCHHHHHHHHHHHHhhcCCCCchhHHHHHHH-H--HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC----
Q 010994          286 --GNKSEVLRLWDLEKTACKRYINRDYITMLEA-L--MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG----  356 (496)
Q Consensus       286 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----  356 (496)
                        +++++|+..|+...    ..+...+..+... +  ...+++++|...|++..+.|   +...+..+...|. .|    
T Consensus       229 ~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~  300 (452)
T 3e4b_A          229 GTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVP  300 (452)
T ss_dssp             SSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSC
T ss_pred             CCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCC
Confidence              79999999999776    2456677777776 4  46899999999999999876   5667777777777 55    


Q ss_pred             -chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc--
Q 010994          357 -LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD----AGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD--  429 (496)
Q Consensus       357 -~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--  429 (496)
                       ++++|..+|++.. .|   +...+..+...|..    ..+.++|..+|+++.+     .|. |+  ....|...|..  
T Consensus       301 ~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-----~g~-~~--A~~~Lg~~y~~G~  368 (452)
T 3e4b_A          301 ADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR-----NGQ-NS--ADFAIAQLFSQGK  368 (452)
T ss_dssp             CCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT-----TTC-TT--HHHHHHHHHHSCT
T ss_pred             CCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh-----hCh-HH--HHHHHHHHHHhCC
Confidence             9999999999988 43   77888888888877    3499999999999987     443 33  34445555543  


Q ss_pred             --cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC----CcHHHHHHHHH
Q 010994          430 --EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG----KGVDELLDSMK  476 (496)
Q Consensus       430 --~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~a~~~~~~m~  476 (496)
                        ..+.++|...++...+...++..  ..+-.......    .+|..+.++.+
T Consensus       369 g~~~d~~~A~~~~~~A~~~g~~~a~--~~l~~l~~~~~~~~~~~a~~~~~~~~  419 (452)
T 3e4b_A          369 GTKPDPLNAYVFSQLAKAQDTPEAN--DLATQLEAPLTPAQRAEGQRLVQQEL  419 (452)
T ss_dssp             TBCCCHHHHHHHHHHHHTTCCHHHH--HHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCHHHH--HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence              46899999999988764333332  22322232222    45666665544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.69  E-value=3.2e-15  Score=126.84  Aligned_cols=199  Identities=17%  Similarity=0.057  Sum_probs=129.7

Q ss_pred             CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994          199 PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFL  278 (496)
Q Consensus       199 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  278 (496)
                      ++...+..+...+.+.|++++|...|++.. ..++ .+...+..+..++.+.|++++|...|++..+..+ .+...+..+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l   79 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERAL-KENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVL   79 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence            455666667777777777777777777776 5444 5666677777777777777777777777766543 445667777


Q ss_pred             HHHHHhc-----------CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHH
Q 010994          279 ISLYASL-----------GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNA  347 (496)
Q Consensus       279 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  347 (496)
                      ..++...           |++++|+..++......+ .+...+..+..++...|++++|...|++..+..  .+...+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence            7777777           777777777777666654 455667777777777777777777777777765  46666777


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          348 VIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL  404 (496)
Q Consensus       348 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  404 (496)
                      +...|...|++++|...|++..+..+. +...+..+...+...|++++|+..+++..
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            777777777777777777777776544 56677777777777777777777776653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.69  E-value=5.8e-15  Score=125.27  Aligned_cols=196  Identities=19%  Similarity=0.113  Sum_probs=96.6

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994          235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML  314 (496)
Q Consensus       235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  314 (496)
                      ++...+..+...+...|++++|...|++..+..+ .+...+..+..++.+.|++++|+..++......+ .+...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHH
Confidence            4555566666666666666666666666665433 4455666666666666666666666666665544 4445555566


Q ss_pred             HHHHhc-----------CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHH
Q 010994          315 EALMKL-----------GEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVV  383 (496)
Q Consensus       315 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l  383 (496)
                      .++...           |++++|...+++..+..+ .+...+..+...|...|++++|+..|++..+.+  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP-RYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            666555           555555555554444321 123344444444444555555555555544444  244444444


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010994          384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVA  441 (496)
Q Consensus       384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~  441 (496)
                      ...|...|++++|+..|+++++      ..+.+...+..+..++...|++++|...++
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  209 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALE------QAPKDLDLRVRYASALLLKGKAEEAARAAA  209 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHTC------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence            4445555555555555555444      111223344444444444455554444444

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.68  E-value=1.1e-14  Score=128.62  Aligned_cols=252  Identities=9%  Similarity=-0.010  Sum_probs=161.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc--chHHHHHH
Q 010994          203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG--IGYNFLIS  280 (496)
Q Consensus       203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~l~~  280 (496)
                      .+......+...|++++|+..|++.. +..+ .+...+..+..+|...|++++|...+++..+....++.  .+|..+..
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l-~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLE-AKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHH-HTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH-HhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            34445556666777777777776665 3332 33445666666777777777777777776652211111  12666777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhH
Q 010994          281 LYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQN  360 (496)
Q Consensus       281 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  360 (496)
                      .+...|++++|+..|+......+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777776666554 455667777777777777777777777776652 2244455555523334458888


Q ss_pred             HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHHhhhcCCCCCCC------HHHHHHHHHHHhccC
Q 010994          361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGK---TERGFQCMKAALSVYVEGKGWKPD------PKVITSILSKLGDEG  431 (496)
Q Consensus       361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g  431 (496)
                      |...|+++.+..+. +...+..+...+...|+   +++|...++++++..    .-.|+      ...+..+...+...|
T Consensus       161 A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~  235 (272)
T 3u4t_A          161 ADSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVC----APGGAKYKDELIEANEYIAYYYTINR  235 (272)
T ss_dssp             HHHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHH----GGGGGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH----hcccccchHHHHHHHHHHHHHHHHcC
Confidence            88888888776543 46677777777777777   777888888887622    11122      246667777888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 010994          432 SVQDVEAFVAALRTVIPMNRQMYHAFIKANIR  463 (496)
Q Consensus       432 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  463 (496)
                      ++++|...+++..+..|.+...+..+......
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~  267 (272)
T 3u4t_A          236 DKVKADAAWKNILALDPTNKKAIDGLKMKLEH  267 (272)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred             CHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence            88888888888887777777777666554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.68  E-value=3.8e-14  Score=123.52  Aligned_cols=209  Identities=11%  Similarity=-0.014  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994          237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA  316 (496)
Q Consensus       237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  316 (496)
                      ...+..+...+...|++++|...|+++.+..+ .+..++..+...+...|++++|.+.++.+....+ .+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence            34455566666666666666666666655432 3455666666666667777777776666655543 345556666666


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994          317 LMKLGEHEEAEKVLKEWELSGNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER  395 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  395 (496)
                      +...|++++|..+++++.+.+..| +...+..+...|...|++++|...++++.+.... +...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence            667777777777777666522222 3445566666677777777777777777665433 56667777777777777777


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994          396 GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY  454 (496)
Q Consensus       396 a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  454 (496)
                      |...++++.+      ..+.+...+..+...+...|++++|.++++.+.+..|.+....
T Consensus       194 A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  246 (252)
T 2ho1_A          194 ARQYYDLFAQ------GGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ  246 (252)
T ss_dssp             HHHHHHHHHT------TSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHH
T ss_pred             HHHHHHHHHH------hCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            7777777765      2334555666666677777777777777777766555555443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.66  E-value=6.7e-14  Score=119.49  Aligned_cols=211  Identities=12%  Similarity=0.001  Sum_probs=131.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994          236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE  315 (496)
Q Consensus       236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  315 (496)
                      +...+..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++......+ .+...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence            344555566666666666666666666655432 3455666666666666777777776666655543 34455666666


Q ss_pred             HHHhc-CCHHHHHHHHHHHHhcCCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh
Q 010994          316 ALMKL-GEHEEAEKVLKEWELSGNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT  393 (496)
Q Consensus       316 ~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  393 (496)
                      .+... |++++|...++.+.+.+..| +...+..+...+...|++++|...++++.+..+. +...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence            66666 77777777776666521122 2345566666677777777777777776665433 466677777777777777


Q ss_pred             HHHHHHHHHHHHhhhcCCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994          394 ERGFQCMKAALSVYVEGKGWK-PDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYH  455 (496)
Q Consensus       394 ~~a~~~~~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  455 (496)
                      ++|...+++++.      ..+ .+...+..+...+...|+.++|..+++.+....|.++....
T Consensus       164 ~~A~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  220 (225)
T 2vq2_A          164 GDADYYFKKYQS------RVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT  220 (225)
T ss_dssp             HHHHHHHHHHHH------HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHH------hCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence            777777777765      122 34555666666666777777777777766655555554443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.66  E-value=1.9e-14  Score=126.97  Aligned_cols=235  Identities=12%  Similarity=0.024  Sum_probs=139.7

Q ss_pred             cchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhHHHHHHH
Q 010994           98 PCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS--TLTYNDIMC  174 (496)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~  174 (496)
                      ++........+...|++++|+..|+++.+..| +...+..+..++...|++++|+..+++..+.+..|+  ..+|..+..
T Consensus         3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK   82 (272)
T ss_dssp             --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence            33444445555566666666666666665555 355667777777777777777777777766321111  223667777


Q ss_pred             HHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChH
Q 010994          175 LYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLID  254 (496)
Q Consensus       175 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  254 (496)
                      .+...|++++|...|++..+... .+..++..+..++...|++++|...+++.. .... .+...+..+...+...++++
T Consensus        83 ~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           83 ILMKKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQI-RPTT-TDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGC-CSSC-CCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHh-hcCC-CcHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777766432 244567777777777777777777777776 4432 45555655552333344777


Q ss_pred             HHHHHHHHHHHhcccCccchHHHHHHHHHhcCC---HHHHHHHHHHHHhhcC-CCC------chhHHHHHHHHHhcCCHH
Q 010994          255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGN---KSEVLRLWDLEKTACK-RYI------NRDYITMLEALMKLGEHE  324 (496)
Q Consensus       255 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~~~~~  324 (496)
                      +|...|++..+..+ .+...+..+..++...|+   +++|...++....... .|+      ...|..+...|...|+++
T Consensus       160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            77777777666432 334555566666666666   6666666665544331 111      134445555555556666


Q ss_pred             HHHHHHHHHHhc
Q 010994          325 EAEKVLKEWELS  336 (496)
Q Consensus       325 ~a~~~~~~~~~~  336 (496)
                      +|...++++.+.
T Consensus       239 ~A~~~~~~al~~  250 (272)
T 3u4t_A          239 KADAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc
Confidence            666666555554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.66  E-value=3e-14  Score=130.77  Aligned_cols=249  Identities=8%  Similarity=0.024  Sum_probs=168.6

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHHhcccCccchHHHHHH
Q 010994          202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL-IDKASDVLKKAEERLEQKDGIGYNFLIS  280 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~l~~  280 (496)
                      ..|..+..++...|++++|+..++++. ..++ -+..+|+.+..++...|+ +++|+..|++.....+ .+...|..+..
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al-~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~  174 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAI-ELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHH-HhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence            345556666666777777777777666 4443 456666667777777775 7777777777766543 45566777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh-cCchh
Q 010994          281 LYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN-NGLVQ  359 (496)
Q Consensus       281 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~  359 (496)
                      ++...|++++|+..|+.+....+ .+...|..+..++.+.|++++|...++++.+..+. +...|+.+..++.+ .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            77777777777777777766655 55666777777777777777777777777766432 55667777777777 45546


Q ss_pred             HH-----HHHHHHHHhcCCCCCHhHHHHHHHHHHhcC--ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccC-
Q 010994          360 NA-----EAILEDLVEKGKATTPNSWAVVAAGYFDAG--KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEG-  431 (496)
Q Consensus       360 ~a-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-  431 (496)
                      +|     +..|++.++..+. +...|+.+...+...|  ++++|++.+.++ +      ..+.+...+..+...+.+.| 
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~------~~p~~~~al~~La~~~~~~~~  324 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q------PSHSSPYLIAFLVDIYEDMLE  324 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T------TTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-c------cCCCCHHHHHHHHHHHHHHhc
Confidence            66     4777777776554 6677777777777777  577888777776 4      23445567777777777663 


Q ss_pred             --------CHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHh
Q 010994          432 --------SVQDVEAFVAAL-RTVIPMNRQMYHAFIKANIR  463 (496)
Q Consensus       432 --------~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~  463 (496)
                              ..++|.++++.+ .+..|.....|..+...+..
T Consensus       325 ~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          325 NQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence                    247788888887 56566666777777666554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.65  E-value=5e-14  Score=129.30  Aligned_cols=239  Identities=11%  Similarity=0.009  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCC-HHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994          237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN-KSEVLRLWDLEKTACKRYINRDYITMLE  315 (496)
Q Consensus       237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  315 (496)
                      ...|..+...+...|++++|+..|++.....+ .+..+|+.+..++...|+ +++|+..|+......+ .+...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
Confidence            56678888899999999999999999988654 567889999999999997 9999999999988876 67788999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh-cCChH
Q 010994          316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD-AGKTE  394 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~~~  394 (496)
                      ++...|++++|...|+++.+... -+...|..+..++.+.|++++|+..|+++++.++. +...|+.+...+.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ldP-~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            99999999999999999998753 36788999999999999999999999999998776 88999999999999 66657


Q ss_pred             HH-----HHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccC--CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-
Q 010994          395 RG-----FQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEG--SVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-  465 (496)
Q Consensus       395 ~a-----~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  465 (496)
                      +|     +..|++++.       +.| +...|..+...+...|  ++++|.+.+..+ +..+.+...+..++.+|.+.| 
T Consensus       253 eA~~~~el~~~~~Al~-------l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~  324 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIK-------LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLE  324 (382)
T ss_dssp             HHHHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhc
Confidence            77     589999987       455 4578888888888888  689999999988 667888899999999998863 


Q ss_pred             ----------CcHHHHHHHH-HhCCCCCChhHHHH
Q 010994          466 ----------KGVDELLDSM-KADGIDEDEETKEI  489 (496)
Q Consensus       466 ----------~~a~~~~~~m-~~~g~~p~~~t~~~  489 (496)
                                ++|+++++++ .+  +.|+..-|..
T Consensus       325 ~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~  357 (382)
T 2h6f_A          325 NQCDNKEDILNKALELCEILAKE--KDTIRKEYWR  357 (382)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHH--hCchhHHHHH
Confidence                      5788999998 55  5677665443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.65  E-value=1.3e-14  Score=125.66  Aligned_cols=208  Identities=12%  Similarity=0.027  Sum_probs=93.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 010994          240 YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK  319 (496)
Q Consensus       240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  319 (496)
                      |..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++......+ .+...+..+...+..
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVV  103 (243)
T ss_dssp             ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHH
Confidence            33334444444444444444444443221 2333444444444444444444444444443332 233444444444455


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994          320 LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC  399 (496)
Q Consensus       320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  399 (496)
                      .|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|...
T Consensus       104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence            555555555555444432 123334444555555555555555555555544322 444555555555555666666666


Q ss_pred             HHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994          400 MKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF  457 (496)
Q Consensus       400 ~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  457 (496)
                      ++++..      ..+.+..++..+...+...|++++|...++++.+..|.+...+..+
T Consensus       182 ~~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  233 (243)
T 2q7f_A          182 FAAVTE------QDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAK  233 (243)
T ss_dssp             HHHHHH------HCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHH------hCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHH
Confidence            655554      1222344555555555555666666666655555555555444433

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.63  E-value=1.1e-13  Score=120.50  Aligned_cols=211  Identities=10%  Similarity=-0.066  Sum_probs=181.9

Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994          272 GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG  351 (496)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (496)
                      ...|..+...+...|++++|...|+.+....+ .+...+..+...+...|++++|...++++.+... .+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHH
Confidence            56788889999999999999999998887765 5678889999999999999999999999988743 366788889999


Q ss_pred             HHhcCchhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc
Q 010994          352 YCNNGLVQNAEAILEDLVEKGKAT-TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE  430 (496)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  430 (496)
                      |...|++++|..+++++.+.+..| +...+..+...+...|++++|...++++++      ..+.+...+..+...+...
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~la~~~~~~  188 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLR------LNRNQPSVALEMADLLYKE  188 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCSCCHHHHHHHHHHHHHT
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCcccHHHHHHHHHHHHHc
Confidence            999999999999999998833334 566888899999999999999999999987      2234578889999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHh
Q 010994          431 GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVC  492 (496)
Q Consensus       431 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~  492 (496)
                      |++++|...++.+.+..+.+...+..+...+...|  ++|.+.++++.+.  .|+...+..++.
T Consensus       189 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~  250 (252)
T 2ho1_A          189 REYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEFQA  250 (252)
T ss_dssp             TCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHHHh
Confidence            99999999999998888889999999999999999  8999999999884  577766655543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.63  E-value=1.6e-13  Score=117.12  Aligned_cols=213  Identities=10%  Similarity=-0.015  Sum_probs=180.5

Q ss_pred             CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994          270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (496)
                      .+...+..+...+...|++++|...++......+ .+...+..+...+...|++++|...++.+.+.. +.+...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~   83 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG   83 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence            4556788899999999999999999998888765 567788899999999999999999999998874 33667888899


Q ss_pred             HHHHhc-CchhHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHH
Q 010994          350 IGYCNN-GLVQNAEAILEDLVEKGKATT-PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKL  427 (496)
Q Consensus       350 ~~~~~~-g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~  427 (496)
                      ..|... |++++|...++++.+.+..|+ ...+..+...+...|++++|+..++++++      ..+.+...+..+...+
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~la~~~  157 (225)
T 2vq2_A           84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA------AQPQFPPAFKELARTK  157 (225)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCchHHHHHHHHH
Confidence            999999 999999999999998322333 57889999999999999999999999987      2334578888999999


Q ss_pred             hccCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHh
Q 010994          428 GDEGSVQDVEAFVAALRTVIP-MNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVC  492 (496)
Q Consensus       428 ~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~  492 (496)
                      ...|++++|...++.+....| .+...+..+...+...|  +.|..+++.+.+  ..|+......++.
T Consensus       158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~  223 (225)
T 2vq2_A          158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTVLT  223 (225)
T ss_dssp             HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHhc
Confidence            999999999999999888777 88889988888888888  788888888876  3577776665553

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.63  E-value=1.8e-14  Score=127.40  Aligned_cols=245  Identities=9%  Similarity=-0.120  Sum_probs=119.2

Q ss_pred             CCCCcHHHHHHHHHHCCCC---CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 010994          180 GQYEKVPDVLTEMKAKNIF---PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKA  256 (496)
Q Consensus       180 ~~~~~a~~~~~~m~~~~~~---p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  256 (496)
                      |++++|...|+++.+....   .+..++..+..++...|++++|...|+++. ..+. .+..++..+...|...|++++|
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al-~~~~-~~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL-AIRP-DMPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHH-HcCC-CcHHHHHHHHHHHHHccCHHHH
Confidence            3444444444444443210   023334444455555555555555555544 2222 3344555555555555555555


Q ss_pred             HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994          257 SDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS  336 (496)
Q Consensus       257 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (496)
                      ...|++.....+ .+..++..+..++...|++++|...++.+....+  +.......+..+...|++++|...+......
T Consensus        97 ~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  173 (275)
T 1xnf_A           97 YEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  173 (275)
T ss_dssp             HHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            555555554332 3344555555555555555555555555544432  2222222333334456666666666555544


Q ss_pred             CCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC---CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC
Q 010994          337 GNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT---TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW  413 (496)
Q Consensus       337 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  413 (496)
                      . +++... ..++..+...++.++|...+.+..+.....   +...+..+...|...|++++|...|++++.       .
T Consensus       174 ~-~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~  244 (275)
T 1xnf_A          174 S-DKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA-------N  244 (275)
T ss_dssp             S-CCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------T
T ss_pred             C-CcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh-------C
Confidence            2 222222 234555555556666666666555432110   135666666777777777777777777765       3


Q ss_pred             CCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994          414 KPDPKVITSILSKLGDEGSVQDVEAFV  440 (496)
Q Consensus       414 ~p~~~~~~~l~~~~~~~g~~~~a~~~~  440 (496)
                      .|+.  +.....++...|++++|.+.+
T Consensus       245 ~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          245 NVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            3422  112233445556666665544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.63  E-value=4.2e-14  Score=122.43  Aligned_cols=210  Identities=12%  Similarity=0.055  Sum_probs=164.6

Q ss_pred             CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994          270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (496)
                      .....|..+...+...|++++|...|+......+ .+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            4557788888999999999999999998887655 567888899999999999999999999998874 33677888899


Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGD  429 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~  429 (496)
                      ..|...|++++|...++++.+.... +...+..+...+...|++++|...+++++.      ..+.+...+..+...+..
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVE------LNENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHH------hCCccHHHHHHHHHHHHH
Confidence            9999999999999999999987654 788899999999999999999999999987      234467888899999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHH
Q 010994          430 EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEIL  490 (496)
Q Consensus       430 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l  490 (496)
                      .|++++|...++.+....+.+..+|..+..+|...|  ++|...++++.+  +.|+.......
T Consensus       172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~  232 (243)
T 2q7f_A          172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAID--IQPDHMLALHA  232 (243)
T ss_dssp             HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHc--cCcchHHHHHH
Confidence            999999999999998888888999999999999999  899999999988  45665544333

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=7.7e-13  Score=116.72  Aligned_cols=219  Identities=10%  Similarity=-0.045  Sum_probs=99.7

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcccCccchHHHH
Q 010994          203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK----ANLIDKASDVLKKAEERLEQKDGIGYNFL  278 (496)
Q Consensus       203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~l  278 (496)
                      ++..+...+...|++++|.+.|++.. +.   .+...+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus         8 a~~~lg~~~~~~~~~~~A~~~~~~a~-~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l   80 (273)
T 1ouv_A            8 ELVGLGAKSYKEKDFTQAKKYFEKAC-DL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH-HT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHH-HC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence            34444444444444444444444444 21   222334444444444    445555555554444332   33344444


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994          279 ISLYAS----LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRIPNAVII  350 (496)
Q Consensus       279 ~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (496)
                      ...|..    .+++++|+..|+.....+   +...+..+...|..    .+++++|...+++..+.+   +...+..+..
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~  154 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  154 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence            444444    445555555444443331   33344444444444    455555555555444432   2333344444


Q ss_pred             HHHh----cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          351 GYCN----NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD----AGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       351 ~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      .|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|+..|+++.+     .  .| ...+..
T Consensus       155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~-----~--~~-~~a~~~  223 (273)
T 1ouv_A          155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE-----L--EN-GGGCFN  223 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH-----T--TC-HHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh-----C--CC-HHHHHH
Confidence            4444    455555555555554432   33444445555555    5555555555555544     1  11 334444


Q ss_pred             HHHHHhc----cCCHHHHHHHHHHHHh
Q 010994          423 ILSKLGD----EGSVQDVEAFVAALRT  445 (496)
Q Consensus       423 l~~~~~~----~g~~~~a~~~~~~~~~  445 (496)
                      +...+..    .+++++|.+.+++..+
T Consensus       224 l~~~~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          224 LGAMQYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHHHHcCCCcccCHHHHHHHHHHHHH
Confidence            4444444    4555555555554443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.62  E-value=8.9e-13  Score=116.29  Aligned_cols=224  Identities=14%  Similarity=0.016  Sum_probs=159.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCChhhHH
Q 010994          130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKNIFPDNFSYR  205 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~  205 (496)
                      ++.++..+...+...|++++|...|++..+.   .+...+..+...+..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4666777777777788888888888877763   255677777777777    778888888888777764   566677


Q ss_pred             HHHHHHhh----cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHhcccCccchHHH
Q 010994          206 ICINSYGA----RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK----ANLIDKASDVLKKAEERLEQKDGIGYNF  277 (496)
Q Consensus       206 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~  277 (496)
                      .+...|..    .+++++|+..|++.. +.+   +...+..+...|..    .+++++|...|++..+.+   +...+..
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~  151 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKAC-DLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHH-HTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHH-HcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence            77777777    788888888887776 433   55667777777777    788888888887776644   4456666


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994          278 LISLYAS----LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK----LGEHEEAEKVLKEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       278 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (496)
                      +...|..    .+++++|+..|+.....+   +...+..+...|..    .+++++|...+++..+.+.   ...+..+.
T Consensus       152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~  225 (273)
T 1ouv_A          152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLG  225 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHH
Confidence            6777776    777778877777666542   34566667777777    7777777777777776542   45566666


Q ss_pred             HHHHh----cCchhHHHHHHHHHHhcC
Q 010994          350 IGYCN----NGLVQNAEAILEDLVEKG  372 (496)
Q Consensus       350 ~~~~~----~g~~~~a~~~~~~~~~~~  372 (496)
                      ..|..    .+++++|...|++..+.+
T Consensus       226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          226 AMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            77777    777777777777777765

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.61  E-value=1.7e-14  Score=135.22  Aligned_cols=301  Identities=13%  Similarity=0.051  Sum_probs=173.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCCCcHHHHHHHHHHC----CCCC-Ch
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALS----TLTYNDIMCLYSKTGQYEKVPDVLTEMKAK----NIFP-DN  201 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~  201 (496)
                      ...+......+...|++++|...|++..+.+.. +    ...|..+...+...|++++|...+++....    +..| ..
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~   87 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA   87 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence            444555556666666666666666666554221 2    234556666666666666666666654332    1111 13


Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHhhcC----CCCCCCHHHHHHHHHHHHhcCC--------------------hHHHH
Q 010994          202 FSYRICINSYGARSDLEGMEIILREMESQ----PHIVLDWSTYASAAHFYIKANL--------------------IDKAS  257 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~li~~~~~~~~--------------------~~~a~  257 (496)
                      .++..+...+...|++++|...+++....    .+......++..+...|...|+                    +++|.
T Consensus        88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~  167 (406)
T 3sf4_A           88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV  167 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence            34555666666677777776666655410    0000113356666677777777                    77777


Q ss_pred             HHHHHHHHhcc-----cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CC----chhHHHHHHHHHhcCCHHHHH
Q 010994          258 DVLKKAEERLE-----QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR-YI----NRDYITMLEALMKLGEHEEAE  327 (496)
Q Consensus       258 ~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~  327 (496)
                      ..+++......     .....++..+...+...|++++|...++........ ++    ...+..+...+...|++++|.
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            77766543211     112345677777777788888888877766554321 11    125666777777788888888


Q ss_pred             HHHHHHHhcCCC-CC----cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHH
Q 010994          328 KVLKEWELSGNS-YD----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       328 ~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      ..+++..+.... .+    ..++..+...|...|++++|...+++..+.... ++    ..++..+...|...|++++|.
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            777776643111 01    345666777777788888888877776543111 11    446677777788888888888


Q ss_pred             HHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCH
Q 010994          398 QCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSV  433 (496)
Q Consensus       398 ~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~  433 (496)
                      ..++++++.... .+..+ ...++..+...+...|+.
T Consensus       328 ~~~~~al~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          328 HFAEKHLEISRE-VGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH-hcCCcchhHHHHHHHHHHHHhhHh
Confidence            888887763211 11111 123455555555555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.61  E-value=8.4e-14  Score=131.92  Aligned_cols=346  Identities=11%  Similarity=0.028  Sum_probs=235.2

Q ss_pred             hhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC
Q 010994          104 QLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQT---DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG  180 (496)
Q Consensus       104 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~  180 (496)
                      +...+.+.|++++|..+|.++.+.+ +...+..|...|...|+.   ++|...|++..+.    +...+..+...+...+
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g-~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~   83 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG-YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKP   83 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT-CCTGGGTCC--------------------------------CHHHHHHHHHTC-
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCC
Confidence            4556678899999999999987653 445556677777778888   9999999988765    6667777777565555


Q ss_pred             -----CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH---HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 010994          181 -----QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE---GMEIILREMESQPHIVLDWSTYASAAHFYIKANL  252 (496)
Q Consensus       181 -----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  252 (496)
                           ++++|...|++..+.|..   ..+..+...|...+..+   .+.+.+.... ..+.   ......+...|...+.
T Consensus        84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~-~~g~---~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQ-AAGY---PEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHH-HHTC---TTHHHHHHHHHHHHTC
T ss_pred             CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HCCC---HHHHHHHHHHHHcCCC
Confidence                 667999999999987643   36667777777655443   3455555544 3333   3456668888888887


Q ss_pred             hHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC---CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc----CCHHH
Q 010994          253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLG---NKSEVLRLWDLEKTACKRYINRDYITMLEALMKL----GEHEE  325 (496)
Q Consensus       253 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~  325 (496)
                      ++++......+.......+...+..+...|...|   +.++|+..|+.....+. ++...+..+...|...    +++++
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHH
Confidence            6666665555444444455568999999999999   99999999998887765 5555556777777654    79999


Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHH-H--HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-----ChHHHH
Q 010994          326 AEKVLKEWELSGNSYDTRIPNAVIIG-Y--CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-----KTERGF  397 (496)
Q Consensus       326 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----~~~~a~  397 (496)
                      |...|+... .   -+...+..+... |  ...+++++|..+|++..+.|   +...+..+...|. .|     +.++|+
T Consensus       236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence            999999987 3   355667777776 4  46899999999999999887   7788888888887 55     999999


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC-C-----Cc
Q 010994          398 QCMKAALSVYVEGKGWKPDPKVITSILSKLGD----EGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRN-G-----KG  467 (496)
Q Consensus       398 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~  467 (496)
                      .+|+++.         .-+......+...|..    ..+.++|...|++..+.  .++.....|...|..- |     ++
T Consensus       308 ~~~~~Aa---------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~  376 (452)
T 3e4b_A          308 AHFEKAV---------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLN  376 (452)
T ss_dssp             HHHHTTT---------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHH
T ss_pred             HHHHHHh---------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHH
Confidence            9999862         4466777777777765    34999999999987763  3455666777777642 2     57


Q ss_pred             HHHHHHHHHhCCCC
Q 010994          468 VDELLDSMKADGID  481 (496)
Q Consensus       468 a~~~~~~m~~~g~~  481 (496)
                      |..+|+...+.|..
T Consensus       377 A~~~~~~A~~~g~~  390 (452)
T 3e4b_A          377 AYVFSQLAKAQDTP  390 (452)
T ss_dssp             HHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHCCCH
Confidence            88888888887743

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=1.8e-13  Score=120.83  Aligned_cols=245  Identities=12%  Similarity=-0.018  Sum_probs=191.2

Q ss_pred             HhhcCChHHHHHHHHHhhcCCCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCC
Q 010994          211 YGARSDLEGMEIILREMESQPHI---VLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN  287 (496)
Q Consensus       211 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~  287 (496)
                      ....|++++|+..++++. +...   +.+..++..+...+...|++++|...|+++....+ .+..+|..+...+...|+
T Consensus        15 ~~~~~~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQIL-ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHH-TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTC
T ss_pred             cCccchHHHHHHHHHHHH-hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccC
Confidence            345688999999999998 4421   12467788899999999999999999999988654 567889999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHH
Q 010994          288 KSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILED  367 (496)
Q Consensus       288 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  367 (496)
                      +++|...|+......+ .+...+..+..++...|++++|...++.+.+.  .|+.......+..+...|++++|...+++
T Consensus        93 ~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  169 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQ  169 (275)
T ss_dssp             HHHHHHHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999998888765 56788999999999999999999999999986  34554555555666778999999999988


Q ss_pred             HHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-----HHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994          368 LVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-----PKVITSILSKLGDEGSVQDVEAFVAA  442 (496)
Q Consensus       368 ~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~  442 (496)
                      ....... +...+. ++..+...++.++|+..+.++..       ..|+     ...+..+...+...|++++|...|+.
T Consensus       170 ~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  240 (275)
T 1xnf_A          170 HFEKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADAT-------DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKL  240 (275)
T ss_dssp             HHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCC-------SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHhcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhc-------ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8876433 444444 77778888889999999999865       3332     46788889999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHhCC--CcHHHHH
Q 010994          443 LRTVIPMNRQMYHAFIKANIRNG--KGVDELL  472 (496)
Q Consensus       443 ~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~  472 (496)
                      .....|.+...+   ..++...|  ++|++.+
T Consensus       241 al~~~p~~~~~~---~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          241 AVANNVHNFVEH---RYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHTTCCTTCHHH---HHHHHHHHHHHHC----
T ss_pred             HHhCCchhHHHH---HHHHHHHHHHHhhHHHH
Confidence            888665555444   44455555  4444433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.61  E-value=1.1e-11  Score=121.43  Aligned_cols=430  Identities=9%  Similarity=0.042  Sum_probs=293.3

Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcC---HHHHHHHHHhch
Q 010994           49 ELDNWVKNGNKVRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHG---FLSAESYFSNLK  125 (496)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~A~~~~~~~~  125 (496)
                      .++.-.. ..+.|...|..++..+.+.+.++.+..+|+.+....  |..+..+...+..-.+.++   ++.+..+|++..
T Consensus        54 ~lE~~l~-~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal  130 (679)
T 4e6h_A           54 KLNDMIE-EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL  130 (679)
T ss_dssp             HHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred             HHHHHHH-HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence            3444433 346799999999999999999999999999999975  4556666666666677788   999999999999


Q ss_pred             hcC---CCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHH-HCCC-CCC-hhHHHHHHHHHHh---------cCCC
Q 010994          126 DDE---KTYQTYGALLNCYVRQRQT--------DKALSHFRKMK-EMGI-ALS-TLTYNDIMCLYSK---------TGQY  182 (496)
Q Consensus       126 ~~~---~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~-~~g~-~p~-~~~~~~l~~~~~~---------~~~~  182 (496)
                      ...   |++..|...+....+.++.        +...++|+... ..|. .|+ ...|...+.....         .+++
T Consensus       131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~  210 (679)
T 4e6h_A          131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV  210 (679)
T ss_dssp             CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred             HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence            887   8999999988877766654        33457887754 4466 554 5678877776542         3346


Q ss_pred             CcHHHHHHHHHHCCCCCChhhHH---HHHHHHh----------hcCChHHHHHHHHHhh---c--CCCCC----------
Q 010994          183 EKVPDVLTEMKAKNIFPDNFSYR---ICINSYG----------ARSDLEGMEIILREME---S--QPHIV----------  234 (496)
Q Consensus       183 ~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~----------~~~~~~~a~~~~~~~~---~--~~~~~----------  234 (496)
                      +.+..+|++........-..+|.   .......          ...+++.|...+.++.   .  ...++          
T Consensus       211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~  290 (679)
T 4e6h_A          211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN  290 (679)
T ss_dssp             HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence            67888999888532111122332   2211110          0112334445554432   0  01010          


Q ss_pred             -C--C------HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH-HHHHH
Q 010994          235 -L--D------WSTYASAAHFYIKAN-------LIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL-RLWDL  297 (496)
Q Consensus       235 -~--~------~~~~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~  297 (496)
                       |  +      ...|...+..--..+       ..+.+..+|++.....+ -+...|...+..+...|+.++|. ++|+.
T Consensus       291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~r  369 (679)
T 4e6h_A          291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKL  369 (679)
T ss_dssp             SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence             1  0      133444443322222       12345677888877543 56788888888888999999997 99998


Q ss_pred             HHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---------CCC------------cccHHHHHHHHHhcC
Q 010994          298 EKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN---------SYD------------TRIPNAVIIGYCNNG  356 (496)
Q Consensus       298 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~g  356 (496)
                      .....+ .+...+...+....+.|+++.|..+|+.+.+...         .|+            ..+|...+....+.|
T Consensus       370 Ai~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~  448 (679)
T 4e6h_A          370 GQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQ  448 (679)
T ss_dssp             HHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcC
Confidence            887665 4555677788888899999999999999886410         132            235777778778889


Q ss_pred             chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHH
Q 010994          357 LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA-GKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD  435 (496)
Q Consensus       357 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  435 (496)
                      +.+.|..+|.+..+....+....|...+..-.+. ++.+.|..+|+.+++      ..+-+...+...+......|+.+.
T Consensus       449 ~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk------~~p~~~~~w~~y~~fe~~~~~~~~  522 (679)
T 4e6h_A          449 GLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK------YFATDGEYINKYLDFLIYVNEESQ  522 (679)
T ss_dssp             CHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH------HHTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH------HCCCchHHHHHHHHHHHhCCCHHH
Confidence            9999999999998761112334454444434444 458999999999998      344466677788888888999999


Q ss_pred             HHHHHHHHHhcCCC---CHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHH
Q 010994          436 VEAFVAALRTVIPM---NRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILV  491 (496)
Q Consensus       436 a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~  491 (496)
                      |..+|+......++   ....|...+.--.+.|  +.+..+.+++.+.  .|+......+.
T Consensus       523 AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~  581 (679)
T 4e6h_A          523 VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFT  581 (679)
T ss_dssp             HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHH
Confidence            99999998886552   4467999998888999  6788999999884  46655555443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.60  E-value=5.7e-14  Score=131.68  Aligned_cols=302  Identities=11%  Similarity=0.016  Sum_probs=226.2

Q ss_pred             CCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC----hhhHHHHHHHHhhcCChHHHHHHHHHhhc---CCC-CC
Q 010994          163 ALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD----NFSYRICINSYGARSDLEGMEIILREMES---QPH-IV  234 (496)
Q Consensus       163 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~-~~  234 (496)
                      .+....+......+...|++++|...|++..+.+.. +    ...+..+...+...|++++|...+++...   ..+ .+
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence            345667778888999999999999999999886322 3    35678888999999999999999987651   111 11


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc-Cc----cchHHHHHHHHHhcCC--------------------HH
Q 010994          235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQ-KD----GIGYNFLISLYASLGN--------------------KS  289 (496)
Q Consensus       235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~  289 (496)
                      ....++..+...|...|++++|...+++..+.... ++    ..++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            23556788889999999999999999988654221 11    3478888999999999                    99


Q ss_pred             HHHHHHHHHHhhcCC-----CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cccHHHHHHHHHhcCchh
Q 010994          290 EVLRLWDLEKTACKR-----YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YD----TRIPNAVIIGYCNNGLVQ  359 (496)
Q Consensus       290 ~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~  359 (496)
                      +|...++........     .....+..+...+...|++++|...+++..+.... ++    ..++..+...|...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            999999866543221     11246788889999999999999999988754211 11    237788889999999999


Q ss_pred             HHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHH
Q 010994          360 NAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQ  434 (496)
Q Consensus       360 ~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  434 (496)
                      +|...+++..+.... ++    ..++..+...|...|++++|...+++++..............++..+...+...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            999999988753211 12    4578889999999999999999999998732111111111457778888999999999


Q ss_pred             HHHHHHHHHHhc---C---CCCHHHHHHHHHHHHhCC
Q 010994          435 DVEAFVAALRTV---I---PMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       435 ~a~~~~~~~~~~---~---~~~~~~~~~l~~~~~~~g  465 (496)
                      +|...+++..+.   .   +....++..+...+...|
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g  361 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLG  361 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhh
Confidence            999999976553   1   122457788888888877

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.57  E-value=1e-13  Score=130.24  Aligned_cols=285  Identities=10%  Similarity=0.020  Sum_probs=145.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHC----CC-CCCh
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALST----LTYNDIMCLYSKTGQYEKVPDVLTEMKAK----NI-FPDN  201 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~-~p~~  201 (496)
                      ...+..+...+...|++++|...|++..+.+.. +.    ..|..+...+...|++++|...+++..+.    +. ....
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            344455666777778888888888777665322 22    35666677777777777777777666542    10 1112


Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHhhcCC-----CCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHh
Q 010994          202 FSYRICINSYGARSDLEGMEIILREMESQP-----HIVLDWSTYASAAHFYIKANL----------IDKASDVLKKAEER  266 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~  266 (496)
                      ..+..+...+...|++++|...+++.. ..     +.+....++..+...|...|+          .++|...       
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~-------  198 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHL-TLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA-------  198 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-------
Confidence            334445555555555555555555544 11     000112233444444444444          0000000       


Q ss_pred             cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 010994          267 LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-----RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-Y  340 (496)
Q Consensus       267 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~  340 (496)
                                           +++|+..++.......     ......+..+...+...|++++|...+++..+.... .
T Consensus       199 ---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (411)
T 4a1s_A          199 ---------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG  257 (411)
T ss_dssp             ---------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ---------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence                                 4444444443322110     011124445555555556666655555555432110 0


Q ss_pred             C----cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-----CCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994          341 D----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-----TTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK  411 (496)
Q Consensus       341 ~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  411 (496)
                      +    ...+..+...|...|++++|...+++..+....     ....++..+...|...|++++|...+++++.......
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            1    124555666666666666666666665542110     0134566667777777777777777777665211000


Q ss_pred             CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          412 GWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       412 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      .......++..+...+...|++++|...+++..+
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            0001123556666677777777777777776554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.55  E-value=7.9e-14  Score=131.06  Aligned_cols=273  Identities=11%  Similarity=-0.003  Sum_probs=186.5

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHhc-----ccCccch
Q 010994          204 YRICINSYGARSDLEGMEIILREMESQPHIVLDW----STYASAAHFYIKANLIDKASDVLKKAEERL-----EQKDGIG  274 (496)
Q Consensus       204 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~  274 (496)
                      +..+...+...|++++|...|+++. +.+. .+.    ..+..+...|...|++++|...+++..+..     ......+
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al-~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAI-QAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH-HHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHH-Hhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            3344555666677777777776665 3222 122    356666677777777777777777664431     1123456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcC-----CCCchhHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 010994          275 YNFLISLYASLGNKSEVLRLWDLEKTACK-----RYINRDYITMLEALMKLGE-----------------HEEAEKVLKE  332 (496)
Q Consensus       275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~~  332 (496)
                      +..+...|...|++++|...++.......     ......+..+...|...|+                 +++|...+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            67777777778888888777776554421     1223466777778888888                 8888888877


Q ss_pred             HHhc----CC-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHH
Q 010994          333 WELS----GN-SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMKA  402 (496)
Q Consensus       333 ~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~  402 (496)
                      ..+.    +. ......+..+...|...|++++|...+++..+.... ++    ..++..+...|...|++++|...+++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            6542    11 112346778888999999999999999998753211 12    23788899999999999999999999


Q ss_pred             HHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhCC--CcHHHHHHH
Q 010994          403 ALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVI------PMNRQMYHAFIKANIRNG--KGVDELLDS  474 (496)
Q Consensus       403 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g--~~a~~~~~~  474 (496)
                      ++..............++..+...+...|++++|...+++.....      +....++..+...|...|  ++|...+++
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            987331111111124677888889999999999999999776531      112457888999999999  789988888


Q ss_pred             HHhC
Q 010994          475 MKAD  478 (496)
Q Consensus       475 m~~~  478 (496)
                      ..+.
T Consensus       369 al~~  372 (411)
T 4a1s_A          369 HLQL  372 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=1.2e-12  Score=107.79  Aligned_cols=167  Identities=13%  Similarity=0.041  Sum_probs=123.2

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994          235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML  314 (496)
Q Consensus       235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  314 (496)
                      .+..+|..+...|...|++++|+..|++..+..+ .+..+|..+..+|...|++++|...+.......+ .+...+..+.
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~   80 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILG   80 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHH
Confidence            3566777778888888888888888887776543 4566777777788888888888888776666554 4556666677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994          315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE  394 (496)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  394 (496)
                      ..+...++++.|...+....+.. +.+...+..+...|.+.|++++|+..|++..+.++. +..+|..+...|.+.|+++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHH
Confidence            77777788888888887777653 235566777777788888888888888887776544 6677788888888888888


Q ss_pred             HHHHHHHHHHH
Q 010994          395 RGFQCMKAALS  405 (496)
Q Consensus       395 ~a~~~~~~~~~  405 (496)
                      +|++.|+++++
T Consensus       159 ~A~~~~~~al~  169 (184)
T 3vtx_A          159 EAVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88888888876

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.55  E-value=1.4e-13  Score=125.20  Aligned_cols=270  Identities=13%  Similarity=0.065  Sum_probs=147.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCCCcHHHHHHHHHHC----CCCC-ChhhHH
Q 010994          135 GALLNCYVRQRQTDKALSHFRKMKEMGIALS----TLTYNDIMCLYSKTGQYEKVPDVLTEMKAK----NIFP-DNFSYR  205 (496)
Q Consensus       135 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~  205 (496)
                      ......+...|++++|...|+++.+.+.. +    ...+..+...+...|++++|...+++....    +..| ...++.
T Consensus         9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   87 (338)
T 3ro2_A            9 ALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   87 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHH
Confidence            33445555566666666666665554211 2    244555555666666666666665554332    1111 133455


Q ss_pred             HHHHHHhhcCChHHHHHHHHHhhcC---C-CCCCCHHHHHHHHHHHHhcCC--------------------hHHHHHHHH
Q 010994          206 ICINSYGARSDLEGMEIILREMESQ---P-HIVLDWSTYASAAHFYIKANL--------------------IDKASDVLK  261 (496)
Q Consensus       206 ~li~~~~~~~~~~~a~~~~~~~~~~---~-~~~~~~~~~~~li~~~~~~~~--------------------~~~a~~~~~  261 (496)
                      .+...+...|++++|...+++....   . +......++..+...|...|+                    +++|...++
T Consensus        88 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  167 (338)
T 3ro2_A           88 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYE  167 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHH
Confidence            5566666666666666666554410   0 000112355566666666666                    677776666


Q ss_pred             HHHHhc-----ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-CC----chhHHHHHHHHHhcCCHHHHHHHHH
Q 010994          262 KAEERL-----EQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR-YI----NRDYITMLEALMKLGEHEEAEKVLK  331 (496)
Q Consensus       262 ~m~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~  331 (496)
                      +.....     ......++..+...+...|++++|...++........ ++    ...+..+...+...|++++|...++
T Consensus       168 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  247 (338)
T 3ro2_A          168 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK  247 (338)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            653321     1112245666667777777777777777755543221 11    1255666666777777777777776


Q ss_pred             HHHhcCCC-CC----cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHH
Q 010994          332 EWELSGNS-YD----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMK  401 (496)
Q Consensus       332 ~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~  401 (496)
                      +..+.... .+    ..++..+...|...|++++|...+++..+.... .+    ..++..+...|...|++++|...++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE  327 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            66543111 01    334556666667777777777777666542110 01    2356666677777777777777777


Q ss_pred             HHHH
Q 010994          402 AALS  405 (496)
Q Consensus       402 ~~~~  405 (496)
                      +++.
T Consensus       328 ~a~~  331 (338)
T 3ro2_A          328 KHLE  331 (338)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7665

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.54  E-value=1.9e-13  Score=124.42  Aligned_cols=278  Identities=12%  Similarity=0.020  Sum_probs=194.8

Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCC----hhhHHHHHHHHhhcCChHHHHHHHHHhhc---CCC-CCCCHH
Q 010994          167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPD----NFSYRICINSYGARSDLEGMEIILREMES---QPH-IVLDWS  238 (496)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~-~~~~~~  238 (496)
                      ..+......+...|++++|...|+++.+.... +    ...+..+...+...|++++|...+++...   ..+ .+....
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   84 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   84 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHH
Confidence            34556677888999999999999999886322 2    35677888889999999999998887651   111 112355


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhccc-Cc----cchHHHHHHHHHhcCC--------------------HHHHHH
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEERLEQ-KD----GIGYNFLISLYASLGN--------------------KSEVLR  293 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~  293 (496)
                      ++..+...|...|++++|...+++..+.... ++    ..++..+...+...|+                    +++|..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            6777888999999999999999887654321 11    3377788888888888                    888888


Q ss_pred             HHHHHHhhcC-----CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cccHHHHHHHHHhcCchhHHHH
Q 010994          294 LWDLEKTACK-----RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YD----TRIPNAVIIGYCNNGLVQNAEA  363 (496)
Q Consensus       294 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~  363 (496)
                      .++.......     ......+..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|..
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            8876544321     111245777788888899999999888887653111 11    2266777888888899999988


Q ss_pred             HHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010994          364 ILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEA  438 (496)
Q Consensus       364 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  438 (496)
                      .+++..+.... ++    ..++..+...+...|++++|...+++++..............++..+...+...|++++|..
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            88887643111 12    45677788888889999999998888876221101111113466677788888888888888


Q ss_pred             HHHHHHh
Q 010994          439 FVAALRT  445 (496)
Q Consensus       439 ~~~~~~~  445 (496)
                      .+++..+
T Consensus       325 ~~~~a~~  331 (338)
T 3ro2_A          325 FAEKHLE  331 (338)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887765

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.51  E-value=1.6e-11  Score=110.20  Aligned_cols=187  Identities=11%  Similarity=0.026  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch-hHHHHHHHHHhcCCHHHHHHHHHH
Q 010994          254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINR-DYITMLEALMKLGEHEEAEKVLKE  332 (496)
Q Consensus       254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~  332 (496)
                      ++|..+|++......+.+...|..++..+...|++++|..+|+......+ .+.. .|..++..+.+.|++++|..+|++
T Consensus        81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIED-IDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSS-SCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccc-cCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            55555555554421112233455555555555555555555555544322 1122 455555555555555555555555


Q ss_pred             HHhcCCCCCcccHHHHHHHH-HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCC
Q 010994          333 WELSGNSYDTRIPNAVIIGY-CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGK  411 (496)
Q Consensus       333 ~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  411 (496)
                      ..+... .+...|....... ...|+.++|..+|++..+..+. +...|..++..+.+.|+.++|..+|++++.     .
T Consensus       160 a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-----~  232 (308)
T 2ond_A          160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLT-----S  232 (308)
T ss_dssp             HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-----S
T ss_pred             HHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-----c
Confidence            554421 1222222222211 1246666666666665554332 455566666666666666666666666655     2


Q ss_pred             -CCCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          412 -GWKP--DPKVITSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       412 -~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                       .+.|  ....|..++....+.|+.+.|..+++++.+..|
T Consensus       233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence             1233  234555555555556666666666665555444

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.50  E-value=1.2e-11  Score=110.92  Aligned_cols=217  Identities=11%  Similarity=0.013  Sum_probs=144.3

Q ss_pred             HHHHHHHHhchhcCC-CHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc
Q 010994          115 LSAESYFSNLKDDEK-TYQTYGALLNCYVR-------QRQT-------DKALSHFRKMKEMGIALSTLTYNDIMCLYSKT  179 (496)
Q Consensus       115 ~~A~~~~~~~~~~~~-~~~~~~~li~~~~~-------~g~~-------~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~  179 (496)
                      +.|...|+++....| ++..|..++..+..       .|++       ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            456666666666555 57777777766653       4665       77888887777631122455777777777777


Q ss_pred             CCCCcHHHHHHHHHHCCCCCC-hh-hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-hcCChHHH
Q 010994          180 GQYEKVPDVLTEMKAKNIFPD-NF-SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYI-KANLIDKA  256 (496)
Q Consensus       180 ~~~~~a~~~~~~m~~~~~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a  256 (496)
                      |++++|..+|++..+.  .|+ .. .|..+...+.+.|++++|..+|++.. +.+. .+...|........ ..|+.++|
T Consensus       113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~-~~~p-~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR-EDAR-TRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHH-TSTT-CCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHH-hcCC-CCHHHHHHHHHHHHHHcCCHHHH
Confidence            8888888888887763  343 22 67777777777888888888888777 4433 34445543333322 25788888


Q ss_pred             HHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CC--CchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994          257 SDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-RY--INRDYITMLEALMKLGEHEEAEKVLKEW  333 (496)
Q Consensus       257 ~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~  333 (496)
                      ..+|++..+..+ .+...|..++..+.+.|++++|..+|+....... .|  ....|..++....+.|+.+.|..+++++
T Consensus       189 ~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888887766543 4566777777777777888888888877766531 22  3356666777777777888887777777


Q ss_pred             Hhc
Q 010994          334 ELS  336 (496)
Q Consensus       334 ~~~  336 (496)
                      .+.
T Consensus       268 ~~~  270 (308)
T 2ond_A          268 FTA  270 (308)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.50  E-value=4.6e-12  Score=117.73  Aligned_cols=296  Identities=10%  Similarity=0.025  Sum_probs=183.8

Q ss_pred             HHhcCCHHHHHHHHHHHHHC--CCCCC--hhHHHHHHHHH--HhcCCCCcHH-----------HHHHHHHHCCCCCCh--
Q 010994          141 YVRQRQTDKALSHFRKMKEM--GIALS--TLTYNDIMCLY--SKTGQYEKVP-----------DVLTEMKAKNIFPDN--  201 (496)
Q Consensus       141 ~~~~g~~~~A~~~~~~m~~~--g~~p~--~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~m~~~~~~p~~--  201 (496)
                      +.+.+++++|..+++++.+.  .+..|  ...|..++..-  .-.++.+.+.           +.++.+.......+.  
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            34578888888888777543  12122  33333333221  1122223333           666665442111010  


Q ss_pred             --hhHHHHHHHHhhcCChHHHHHHHHHhhcCC----CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC----
Q 010994          202 --FSYRICINSYGARSDLEGMEIILREMESQP----HIVL-DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK----  270 (496)
Q Consensus       202 --~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----  270 (496)
                        ..+......+...|++++|...+++.. ..    +-.+ ...++..+...|...|++++|...+++..+.....    
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~  180 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAE-SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN  180 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence              112224556778889999999888886 32    1111 34567778888888899999988888876542211    


Q ss_pred             --ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-----chhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-
Q 010994          271 --DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI-----NRDYITMLEALMKLGEHEEAEKVLKEWELS----GN-  338 (496)
Q Consensus       271 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-  338 (496)
                        ...+++.+...|...|++++|...++..........     ..++..+..+|...|++++|...+++..+.    +. 
T Consensus       181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence              234677788888888888888888887665433111     136777888888888888888888887762    22 


Q ss_pred             CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC----CCCCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHHhhhcCC
Q 010994          339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG----KATTPNSWAVVAAGYFDAGK---TERGFQCMKAALSVYVEGK  411 (496)
Q Consensus       339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~  411 (496)
                      +....++..+...|.+.|++++|...+++..+..    -+.....+..+...+...|+   .++|+.++++.        
T Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~--------  332 (383)
T 3ulq_A          261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK--------  332 (383)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT--------
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC--------
Confidence            2234567777888888888888888888766431    11112235667777777777   66666666653        


Q ss_pred             CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          412 GWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       412 ~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      +..|+ ...+..+...|...|++++|...+++...
T Consensus       333 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          333 MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            22333 34566777788888888888888876544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.50  E-value=7.2e-13  Score=126.33  Aligned_cols=206  Identities=9%  Similarity=-0.015  Sum_probs=137.4

Q ss_pred             hHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH-HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHH
Q 010994          253 IDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNK-SEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLK  331 (496)
Q Consensus       253 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  331 (496)
                      ++++...+++..... +.+...+..+..++...|++ ++|+..|+......+ .+...+..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344444444433321 23445566666666666666 666666666555544 345566666666666677777777776


Q ss_pred             HHHhcCCCCCcccHHHHHHHHHhc---------CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc--------CChH
Q 010994          332 EWELSGNSYDTRIPNAVIIGYCNN---------GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA--------GKTE  394 (496)
Q Consensus       332 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------~~~~  394 (496)
                      +..+.  .|+...+..+...|...         |++++|...|++..+..+. +...|..+..+|...        |+++
T Consensus       162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence            66665  34455666666666666         7777888888777776544 667777777777777        7788


Q ss_pred             HHHHHHHHHHHhhhcCCCCCC----CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcH
Q 010994          395 RGFQCMKAALSVYVEGKGWKP----DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGV  468 (496)
Q Consensus       395 ~a~~~~~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a  468 (496)
                      +|+..|+++++       +.|    +...+..+..++...|++++|.+.|++.....|.+...+..+..++...|  ++|
T Consensus       239 ~A~~~~~~al~-------~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          239 QALSAYAQAEK-------VDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             HHHHHHHHHHH-------HCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-------hCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88888888876       344    56777777788888888888888888777777777777777777777766  455


Q ss_pred             HH
Q 010994          469 DE  470 (496)
Q Consensus       469 ~~  470 (496)
                      ++
T Consensus       312 i~  313 (474)
T 4abn_A          312 LE  313 (474)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.49  E-value=4e-12  Score=104.69  Aligned_cols=166  Identities=11%  Similarity=0.039  Sum_probs=94.4

Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994          271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII  350 (496)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (496)
                      +...|..+...|...|++++|++.|++..+..+ .+...+..+..++.+.|++++|...+........ .+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence            344566666666666666666666666555544 4445556666666666666666666666555432 23344445555


Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE  430 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  430 (496)
                      .+...++++.|...+.+..+..+. +...+..+...|...|++++|++.|+++++      -.+.+...+..+..++.+.
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~~~lg~~~~~~  154 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTIS------IKPGFIRAYQSIGLAYEGK  154 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHH------hcchhhhHHHHHHHHHHHC
Confidence            555566666666666665554433 455555666666666666666666666655      1122344555555666666


Q ss_pred             CCHHHHHHHHHHHHh
Q 010994          431 GSVQDVEAFVAALRT  445 (496)
Q Consensus       431 g~~~~a~~~~~~~~~  445 (496)
                      |++++|.+.|++..+
T Consensus       155 g~~~~A~~~~~~al~  169 (184)
T 3vtx_A          155 GLRDEAVKYFKKALE  169 (184)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHh
Confidence            666666666665544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.49  E-value=1.1e-12  Score=121.88  Aligned_cols=164  Identities=12%  Similarity=0.008  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhh-----cCCCCch
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEERLEQK-----DGIGYNFLISLYASLGNKSEVLRLWDLEKTA-----CKRYINR  308 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~  308 (496)
                      +++.+...|...|++++|...|++..+.....     ...++..+..+|...|++++|+..++.....     .......
T Consensus       186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  265 (383)
T 3ulq_A          186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ  265 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence            34445555555555555555555443321111     1134555555555566666665555544441     1012234


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCCCcccHHHHHHHHHhcCc---hhHHHHHHHHHHhcCCCC-CHhHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSG----NSYDTRIPNAVIIGYCNNGL---VQNAEAILEDLVEKGKAT-TPNSW  380 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~  380 (496)
                      ++..+...+.+.|++++|...+++..+..    .+.....+..+...|...|+   +++|+.++++..   ..| ....+
T Consensus       266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~---~~~~~~~~~  342 (383)
T 3ulq_A          266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM---LYADLEDFA  342 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc---CHHHHHHHH
Confidence            45555566666666666666665554321    11111224455666666666   555666555542   111 23356


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          381 AVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       381 ~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..+...|...|++++|...++++++
T Consensus       343 ~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          343 IDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6677777778888888887777776

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.48  E-value=7.4e-13  Score=126.26  Aligned_cols=213  Identities=9%  Similarity=-0.044  Sum_probs=142.6

Q ss_pred             cCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHH
Q 010994          112 HGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQT-DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVL  189 (496)
Q Consensus       112 ~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~  189 (496)
                      ++++.+...++......| +...|..+...+...|++ ++|++.|++..+... .+...|..+..+|...|++++|...|
T Consensus        82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            345666666666655555 567777777777777777 788777777766532 25667777777777777777777777


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHhhc---------CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc--------CC
Q 010994          190 TEMKAKNIFPDNFSYRICINSYGAR---------SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA--------NL  252 (496)
Q Consensus       190 ~~m~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~  252 (496)
                      ++..+.  .|+...+..+..++...         |++++|++.+++.. +... .+...|..+..+|...        |+
T Consensus       161 ~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~  236 (474)
T 4abn_A          161 SGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV-QMDV-LDGRSWYILGNAYLSLYFNTGQNPKI  236 (474)
T ss_dssp             HHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHHHHhhccccch
Confidence            777764  35566677777777777         77777777777766 4333 4566666777777766        77


Q ss_pred             hHHHHHHHHHHHHhccc--CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 010994          253 IDKASDVLKKAEERLEQ--KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVL  330 (496)
Q Consensus       253 ~~~a~~~~~~m~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  330 (496)
                      +++|...|++..+..+.  .+...|..+..+|...|++++|...|+......+ .+...+..+..++...|++++|...+
T Consensus       237 ~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          237 SQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            77777777776654321  3556667777777777777777777776666554 34455666666666666666666544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=1.2e-13  Score=124.33  Aligned_cols=247  Identities=14%  Similarity=0.064  Sum_probs=127.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHC------C
Q 010994          130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEM-------GIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAK------N  196 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~  196 (496)
                      +..++..+...+...|++++|..+|+++.+.       ..+....++..+...+...|++++|...+++....      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            3677888889999999999999999887663       22234556777777777888888888877776653      1


Q ss_pred             CCC-ChhhHHHHHHHHhhcCChHHHHHHHHHhhcC------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc--
Q 010994          197 IFP-DNFSYRICINSYGARSDLEGMEIILREMESQ------PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL--  267 (496)
Q Consensus       197 ~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--  267 (496)
                      -.| ...++..+...+...|++++|...+++....      .+.+.....+..+...|...|++++|...+++..+..  
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            111 2344555555666666666666666555411      1111223334444555555555555555555543320  


Q ss_pred             -----ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010994          268 -----EQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT  342 (496)
Q Consensus       268 -----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  342 (496)
                           .+....++..+..++...|++++|...++.+........                            -....+..
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~~~~~~~~  237 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHERE----------------------------FGSVDDEN  237 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH----------------------------HC------
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc----------------------------CCCCCcch
Confidence                 001123344444444444444444444444333211000                            00011111


Q ss_pred             cc-------HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          343 RI-------PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       343 ~~-------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..       +..+...+...+.+.++...+........ .+..++..+...|...|++++|.++|+++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          238 KPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP-TVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             CCHHHHHHHHHHC-------CCSCCCC---------CH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            11       11222223344555666666666655322 2456788888889999999999999988876

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.45  E-value=6.6e-10  Score=108.96  Aligned_cols=393  Identities=8%  Similarity=-0.064  Sum_probs=268.9

Q ss_pred             ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCC---HHHHHH
Q 010994           77 RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQ---TDKALS  152 (496)
Q Consensus        77 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~---~~~A~~  152 (496)
                      ...+.+..|+..+..+  |.+...+...+..+.+.+.++.+..+|+++....| +...|...+..-.+.|+   ++.+..
T Consensus        47 ~~~d~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CCSCHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            3455666667776665  36777788888888888999999999999999887 68889999999999999   999999


Q ss_pred             HHHHHHHCC-CCCChhHHHHHHHHHHhcCCC--------CcHHHHHHHHHHC-CC-CCC-hhhHHHHHHHHh--------
Q 010994          153 HFRKMKEMG-IALSTLTYNDIMCLYSKTGQY--------EKVPDVLTEMKAK-NI-FPD-NFSYRICINSYG--------  212 (496)
Q Consensus       153 ~~~~m~~~g-~~p~~~~~~~l~~~~~~~~~~--------~~a~~~~~~m~~~-~~-~p~-~~~~~~li~~~~--------  212 (496)
                      +|++..... .+|++..|...+....+.++.        +.+.++|+..... |. .|+ ...|...+....        
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~  204 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF  204 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence            999998763 247999999888877666654        2344778776653 66 554 456766665433        


Q ss_pred             -hcCChHHHHHHHHHhhcCCCCCCCHHHHH---HHHHHHH----------hcCChHHHHHHHHHHHHh--ccc---Cc--
Q 010994          213 -ARSDLEGMEIILREMESQPHIVLDWSTYA---SAAHFYI----------KANLIDKASDVLKKAEER--LEQ---KD--  271 (496)
Q Consensus       213 -~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~li~~~~----------~~~~~~~a~~~~~~m~~~--~~~---~~--  271 (496)
                       ..++++.+.++|+... ......-..+|.   .....+.          ...+++.|...+.++...  ++.   |.  
T Consensus       205 eeq~~~~~~R~iy~raL-~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~  283 (679)
T 4e6h_A          205 EEQQRVQYIRKLYKTLL-CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL  283 (679)
T ss_dssp             HHHHHHHHHHHHHHHHT-TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred             HHHhHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence             2345778899999987 432211122332   2221110          012334455555544221  110   10  


Q ss_pred             ------------------cchHHHHHHHHHhcC-------CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHH
Q 010994          272 ------------------GIGYNFLISLYASLG-------NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEA  326 (496)
Q Consensus       272 ------------------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  326 (496)
                                        ...|...+..--..+       ..+.+..+|++.....+ .....|...+.-+...|+.++|
T Consensus       284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a  362 (679)
T 4e6h_A          284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTV  362 (679)
T ss_dssp             TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTH
T ss_pred             ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHH
Confidence                              123444444332222       12345677888887766 5667788888888888999999


Q ss_pred             H-HHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC---------CCC------------HhHHHHHH
Q 010994          327 E-KVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK---------ATT------------PNSWAVVA  384 (496)
Q Consensus       327 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~p~------------~~~~~~l~  384 (496)
                      . .+|+...... +.+...|-..+...-+.|+++.|..+|+++.+...         .|+            ...|...+
T Consensus       363 ~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~  441 (679)
T 4e6h_A          363 ITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM  441 (679)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence            6 9999998753 34555677788888899999999999999886410         132            34688888


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 010994          385 AGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE-GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIR  463 (496)
Q Consensus       385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~  463 (496)
                      ....+.|..+.|..+|.++++     ..-.+....|...+..-.+. ++.+.|.++|+...+..|.++..|...++....
T Consensus       442 ~~erR~~~l~~AR~vf~~A~~-----~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          442 NTMKRIQGLAASRKIFGKCRR-----LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHH-----TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH-----hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            888889999999999999997     20112233444333333333 559999999998888888899999899988888


Q ss_pred             CC--CcHHHHHHHHHhCC
Q 010994          464 NG--KGVDELLDSMKADG  479 (496)
Q Consensus       464 ~g--~~a~~~~~~m~~~g  479 (496)
                      .|  +.|..+|++.....
T Consensus       517 ~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          517 VNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             HTCHHHHHHHHHHHTTTS
T ss_pred             CCCHHHHHHHHHHHHHhc
Confidence            77  78999999988754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.45  E-value=3.8e-11  Score=111.07  Aligned_cols=167  Identities=10%  Similarity=-0.079  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChh----HHHHHHHHHHhcCCCCcHHHHHHHHHHCCC-CCCh----hh
Q 010994          133 TYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTL----TYNDIMCLYSKTGQYEKVPDVLTEMKAKNI-FPDN----FS  203 (496)
Q Consensus       133 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~  203 (496)
                      ........+...|++++|...+++........+..    +++.+...+...|++++|...+++...... .++.    .+
T Consensus        16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   95 (373)
T 1hz4_A           16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   95 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            33444555666777888887777766653222221    344555566666677777666666554210 0111    12


Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHhhc---CCCCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC----ccc
Q 010994          204 YRICINSYGARSDLEGMEIILREMES---QPHIV--L-DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK----DGI  273 (496)
Q Consensus       204 ~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~  273 (496)
                      +..+...+...|++++|...+++...   ..+..  | ....+..+...+...|++++|...+++........    ...
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  175 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  175 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence            33444555555666666555555441   11110  1 12233344455555555555555555544322110    112


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994          274 GYNFLISLYASLGNKSEVLRLWDLEK  299 (496)
Q Consensus       274 ~~~~l~~~~~~~~~~~~a~~~~~~~~  299 (496)
                      ++..+...+...|++++|...++...
T Consensus       176 ~~~~la~~~~~~g~~~~A~~~l~~a~  201 (373)
T 1hz4_A          176 CLAMLIQCSLARGDLDNARSQLNRLE  201 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444444455555555555555443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.44  E-value=6.4e-11  Score=109.72  Aligned_cols=307  Identities=11%  Similarity=0.062  Sum_probs=187.9

Q ss_pred             CCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHC--CC--CCChhHHHHHHHH--HHhcCCCCcHH---------HHHHH
Q 010994          129 KTYQTYGALLNCY--VRQRQTDKALSHFRKMKEM--GI--ALSTLTYNDIMCL--YSKTGQYEKVP---------DVLTE  191 (496)
Q Consensus       129 ~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~l~~~--~~~~~~~~~a~---------~~~~~  191 (496)
                      |+..+-+.|-..|  .+.+++++|..+++++.+.  .+  .++...|..++..  ..-.+....+.         +.++.
T Consensus         8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (378)
T 3q15_A            8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET   87 (378)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence            4455555566666  7788899999888887542  12  2233344444432  11223334444         66666


Q ss_pred             HHHCCCCCCh----hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          192 MKAKNIFPDN----FSYRICINSYGARSDLEGMEIILREMESQPHIVL----DWSTYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       192 m~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      +.....+.+.    ..+......+...|++++|...|++...-..-.+    ...++..+...|...|+++.|...+++.
T Consensus        88 i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~a  167 (378)
T 3q15_A           88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQA  167 (378)
T ss_dssp             HHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            6542111111    1123344556778899999988888762111112    2456677888888888988888888887


Q ss_pred             HHhccc------CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC-C----CchhHHHHHHHHHhcCCHHHHHHHHHH
Q 010994          264 EERLEQ------KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR-Y----INRDYITMLEALMKLGEHEEAEKVLKE  332 (496)
Q Consensus       264 ~~~~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~  332 (496)
                      .+....      ....+++.+..+|...|++++|...++........ +    ...++..+..+|...|++++|...+++
T Consensus       168 l~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~  247 (378)
T 3q15_A          168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK  247 (378)
T ss_dssp             HHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            653221      12346777888888888888888888766553221 1    124566777788888888888888887


Q ss_pred             HHh-----cCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC---C-CHhHHHHHHHHHHhcCC---hHHHHHHH
Q 010994          333 WEL-----SGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA---T-TPNSWAVVAAGYFDAGK---TERGFQCM  400 (496)
Q Consensus       333 ~~~-----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---p-~~~~~~~l~~~~~~~~~---~~~a~~~~  400 (496)
                      ..+     .. +....++..+...|.+.|++++|...+++..+....   | ....+..+...+...++   .++|+..+
T Consensus       248 al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~  326 (378)
T 3q15_A          248 AAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYF  326 (378)
T ss_dssp             HHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            775     32 222556677777788888888888888877654211   1 12345555556666666   66666666


Q ss_pred             HHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994          401 KAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       401 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      ++.        +..|+ ...+..+...|...|++++|...|++..
T Consensus       327 ~~~--------~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          327 EKK--------NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHT--------TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhC--------CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            552        22232 2455567777788888888888777654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.44  E-value=5.6e-13  Score=119.94  Aligned_cols=241  Identities=15%  Similarity=0.080  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHh-------cccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc------C
Q 010994          237 WSTYASAAHFYIKANLIDKASDVLKKAEER-------LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC------K  303 (496)
Q Consensus       237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~  303 (496)
                      ..++..+...+...|++++|..+|+++.+.       .......++..+...|...|++++|...++......      .
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            444555666666666666666666665442       111233455566666666666666666666554431      1


Q ss_pred             -CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhc----
Q 010994          304 -RYINRDYITMLEALMKLGEHEEAEKVLKEWELS------GN-SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK----  371 (496)
Q Consensus       304 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----  371 (496)
                       ......+..+...+...|++++|...++++.+.      +. ......+..+...|...|++++|..+++++.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence             112344556666666677777777666666543      11 112345566677777777777777777776653    


Q ss_pred             --CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcC--CCCCCCH-------HHHHHHHHHHhccCCHHHHHHH
Q 010994          372 --GKAT-TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEG--KGWKPDP-------KVITSILSKLGDEGSVQDVEAF  439 (496)
Q Consensus       372 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~  439 (496)
                        +..| ...++..+...|...|++++|...++++++.....  ....+..       ..+..+...+...+.+.+|...
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              1111 23467777777888888888888888777521000  0011111       1122222233444555555566


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994          440 VAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA  477 (496)
Q Consensus       440 ~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~  477 (496)
                      ++......+....+|..+..+|.+.|  ++|...+++..+
T Consensus       267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            66555545556667777888888877  677777777654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.40  E-value=3e-10  Score=104.97  Aligned_cols=195  Identities=11%  Similarity=0.008  Sum_probs=128.1

Q ss_pred             hhHHHhhcCHHHHHHHHHhchhcCC--CH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCh----hHHHHHH
Q 010994          105 LDLIGRVHGFLSAESYFSNLKDDEK--TY----QTYGALLNCYVRQRQTDKALSHFRKMKEMGI-ALST----LTYNDIM  173 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~~~~~~--~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~  173 (496)
                      ...+...|++++|...+++.....|  +.    .+++.+...+...|++++|...+++...... .++.    .++..+.
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la  100 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS  100 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            4456678999999999888766543  22    2456677788888999999999888754311 1122    2356677


Q ss_pred             HHHHhcCCCCcHHHHHHHHHHC----CCC--CC-hhhHHHHHHHHhhcCChHHHHHHHHHhhc---CCCCCCCHHHHHHH
Q 010994          174 CLYSKTGQYEKVPDVLTEMKAK----NIF--PD-NFSYRICINSYGARSDLEGMEIILREMES---QPHIVLDWSTYASA  243 (496)
Q Consensus       174 ~~~~~~~~~~~a~~~~~~m~~~----~~~--p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~l  243 (496)
                      ..+...|++++|...+++..+.    +..  |. ...+..+...+...|++++|...+++...   ..+......++..+
T Consensus       101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  180 (373)
T 1hz4_A          101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  180 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence            7888899999999998887653    221  22 34556677788889999999998887651   12221123566778


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhcccCcc-chHHH-----HHHHHHhcCCHHHHHHHHHHHH
Q 010994          244 AHFYIKANLIDKASDVLKKAEERLEQKDG-IGYNF-----LISLYASLGNKSEVLRLWDLEK  299 (496)
Q Consensus       244 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~-----l~~~~~~~~~~~~a~~~~~~~~  299 (496)
                      ...+...|++++|...+++.......++. ..+..     .+..+...|++++|...++...
T Consensus       181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~  242 (373)
T 1hz4_A          181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA  242 (373)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCC
Confidence            88888899999999999887654322222 11211     2233556677777766666544

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.37  E-value=1.1e-10  Score=99.78  Aligned_cols=99  Identities=11%  Similarity=0.007  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994          237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA  316 (496)
Q Consensus       237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  316 (496)
                      ...+......+...|++++|...|++..+..+.++...+..+..++...|++++|+..++......+ .+...+..+..+
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~   85 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHHHHH
Confidence            3445555555555555555555555555544323444444455555555555555555554444333 233444445555


Q ss_pred             HHhcCCHHHHHHHHHHHHhc
Q 010994          317 LMKLGEHEEAEKVLKEWELS  336 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~  336 (496)
                      +...|++++|...+++..+.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~  105 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKA  105 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHH
Confidence            55555555555555554443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.36  E-value=8.4e-11  Score=108.92  Aligned_cols=163  Identities=13%  Similarity=0.032  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhcc-----cCccchHHHHHHHHHhcCCHHHHHHHHHHHHh-----hcCCCCch
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEERLE-----QKDGIGYNFLISLYASLGNKSEVLRLWDLEKT-----ACKRYINR  308 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~  308 (496)
                      +++.+..+|...|++++|...|++..+...     .....++..+..+|...|++++|...++....     ..+ ....
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-~~~~  262 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPD-LLPK  262 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGG-GHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCCh-hHHH
Confidence            444455555555555555555554433211     01123455555555666666666665555444     222 1244


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----cccHHHHHHHHHhcCc---hhHHHHHHHHHHhcCCCC-CHhHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYD----TRIPNAVIIGYCNNGL---VQNAEAILEDLVEKGKAT-TPNSW  380 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~  380 (496)
                      ++..+...+.+.|++++|...+++..+.....+    ...+..+...|...++   +++|+..+++.   +..| ....+
T Consensus       263 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~  339 (378)
T 3q15_A          263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACA  339 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHH
Confidence            555556666666666666666666554321111    1123344444445555   55555555542   1111 12345


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          381 AVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       381 ~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..+...|...|++++|...|+++++
T Consensus       340 ~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          340 RSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            5677777777777777777777665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.35  E-value=8.7e-11  Score=96.52  Aligned_cols=129  Identities=16%  Similarity=0.063  Sum_probs=62.6

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994          203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLY  282 (496)
Q Consensus       203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~  282 (496)
                      .+..+...+...|++++|...++++. .... .+...+..+...+...|++++|...++++.+..+ .+...+..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~   86 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVY-DADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTC-CTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH-HhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            34445555555666666666665554 3322 3445555555555555555555555555544322 2334444455555


Q ss_pred             HhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          283 ASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       283 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (496)
                      ...|++++|.+.++......+ .+...+..+...+...|++++|...++.+.+
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~  138 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALG  138 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh
Confidence            555555555555554444332 2333334444444444444444444444433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.34  E-value=5.5e-11  Score=117.95  Aligned_cols=166  Identities=14%  Similarity=0.041  Sum_probs=122.7

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994          236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE  315 (496)
Q Consensus       236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  315 (496)
                      +..+|+.|...|.+.|++++|+..|++..+..+ .+..+|..+..+|.+.|++++|+..|++..+..+ .+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            356677777777777777777777777766543 4456777777777777888888877777776654 45567777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994          316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER  395 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  395 (496)
                      ++...|++++|.+.|++..+... -+...|+.+...|.+.|++++|+..|++..+.++. +...|..+...+...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence            78888888888888877777632 24567777788888888888888888888776544 66777888888888888888


Q ss_pred             HHHHHHHHHH
Q 010994          396 GFQCMKAALS  405 (496)
Q Consensus       396 a~~~~~~~~~  405 (496)
                      |.+.++++++
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877766

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=1.9e-10  Score=94.52  Aligned_cols=164  Identities=13%  Similarity=0.011  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994          238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL  317 (496)
Q Consensus       238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  317 (496)
                      ..+..+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++......+ .+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHH
Confidence            3455566666667777777777766554332 3455666666667777777777777766655543 4455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      ...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence            77777777777777666553 234555666666667777777777777776665433 5566666777777777777777


Q ss_pred             HHHHHHHH
Q 010994          398 QCMKAALS  405 (496)
Q Consensus       398 ~~~~~~~~  405 (496)
                      ..++++++
T Consensus       165 ~~~~~~~~  172 (186)
T 3as5_A          165 PHFKKANE  172 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776665

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.31  E-value=5.4e-11  Score=105.18  Aligned_cols=228  Identities=14%  Similarity=0.038  Sum_probs=142.7

Q ss_pred             HhcCCCCcHHHHHHHHHHC-------CCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcC------CCCCCCHHHHHHH
Q 010994          177 SKTGQYEKVPDVLTEMKAK-------NIFPDNFSYRICINSYGARSDLEGMEIILREMESQ------PHIVLDWSTYASA  243 (496)
Q Consensus       177 ~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l  243 (496)
                      ...|++++|...|++..+.       ..+....++..+..++...|++++|...+++....      .+.+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3557777777777766552       11123456777777888888888888877776511      2222345667778


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhc-------ccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc------CC-CCchh
Q 010994          244 AHFYIKANLIDKASDVLKKAEERL-------EQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC------KR-YINRD  309 (496)
Q Consensus       244 i~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~-~~~~~  309 (496)
                      ...|...|++++|...|++.....       .+....++..+...+...|++++|...++......      .. ....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            888888888888888888776541       12335667788888888888888888888766651      11 22356


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCc-ccHHHHHHHHHhcCchhHHHH------HHHHHHhcCCCC
Q 010994          310 YITMLEALMKLGEHEEAEKVLKEWELS-------GNSYDT-RIPNAVIIGYCNNGLVQNAEA------ILEDLVEKGKAT  375 (496)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~~~~a~~------~~~~~~~~~~~p  375 (496)
                      +..+...+...|++++|...++++.+.       ...+.. ..+..+...+...+....+..      .++..... .+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHH
Confidence            777888888888888888888887753       112222 233333333333333222222      22111111 111


Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          376 TPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ...++..+...|...|++++|..+++++++
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344678888899999999999999988875

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.29  E-value=2e-10  Score=113.97  Aligned_cols=165  Identities=18%  Similarity=0.097  Sum_probs=120.7

Q ss_pred             ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHH
Q 010994          271 DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVII  350 (496)
Q Consensus       271 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  350 (496)
                      +..+|+.+...|.+.|++++|++.|++..+..+ .+...+..+..+|.+.|++++|...|++..+... -+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P-~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            356777788888888888888888887777655 4556777777778888888888888877777632 24566777777


Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhc
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGD  429 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~  429 (496)
                      +|.+.|++++|++.|++..+.+.. +...|+.+...|...|++++|++.|+++++       +.|+ ...+..+..++..
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~-------l~P~~~~a~~~L~~~l~~  157 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALK-------LKPDFPDAYCNLAHCLQI  157 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCChHHHhhhhhHHHh
Confidence            777778888888888777776544 566777777777778888888888877776       4443 4667777777777


Q ss_pred             cCCHHHHHHHHHHHHh
Q 010994          430 EGSVQDVEAFVAALRT  445 (496)
Q Consensus       430 ~g~~~~a~~~~~~~~~  445 (496)
                      .|++++|.+.++++.+
T Consensus       158 ~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          158 VCDWTDYDERMKKLVS  173 (723)
T ss_dssp             TTCCTTHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHH
Confidence            7777777777776654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.29  E-value=2.1e-10  Score=97.93  Aligned_cols=207  Identities=9%  Similarity=-0.062  Sum_probs=158.9

Q ss_pred             CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHH
Q 010994          270 KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVI  349 (496)
Q Consensus       270 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  349 (496)
                      .|+..+......+...|++++|+..|+......+.++...+..+..++...|++++|...+++..+.... +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4567888899999999999999999998888776566677777999999999999999999999987433 567788899


Q ss_pred             HHHHhcCchhHHHHHHHHHHhcCCCCCH-------hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC---HHH
Q 010994          350 IGYCNNGLVQNAEAILEDLVEKGKATTP-------NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD---PKV  419 (496)
Q Consensus       350 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~  419 (496)
                      ..|...|++++|...+++..+..+. +.       ..|..+...+...|++++|++.|+++++       ..|+   ...
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~  155 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD-------VTSKKWKTDA  155 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------SSCHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh-------cCCCcccHHH
Confidence            9999999999999999999987654 55       4588888999999999999999999986       5676   456


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHhCCCCCChhHHHHHHh
Q 010994          420 ITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEETKEILVC  492 (496)
Q Consensus       420 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~g~~p~~~t~~~l~~  492 (496)
                      +..+..++...     +..+++.+....+.+...|..........=++|+..+++..+  +.|+......++.
T Consensus       156 ~~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~  221 (228)
T 4i17_A          156 LYSLGVLFYNN-----GADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQD  221 (228)
T ss_dssp             HHHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHH-----HHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHH
Confidence            77777777544     444556655555555555554443221111788888888887  4577665544443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.29  E-value=2.8e-10  Score=101.15  Aligned_cols=234  Identities=12%  Similarity=0.044  Sum_probs=148.2

Q ss_pred             CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhc-C-ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 010994          183 EKVPDVLTEMKAKNIFPDNFSYRICINSYGAR-S-DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVL  260 (496)
Q Consensus       183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  260 (496)
                      .+|.+++.+..+. .++....| .+   +... + ++++|...|++.                ...|...|++++|...|
T Consensus         2 ~~a~~~~~~a~k~-~~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~   60 (292)
T 1qqe_A            2 SDPVELLKRAEKK-GVPSSGFM-KL---FSGSDSYKFEEAADLCVQA----------------ATIYRLRKELNLAGDSF   60 (292)
T ss_dssp             CCHHHHHHHHHHH-SSCCCTHH-HH---HSCCSHHHHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHH
T ss_pred             CcHHHHHHHHHHH-hCcCCCcc-hh---cCCCCCccHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHH
Confidence            4566666666654 23222222 22   1111 2 366776666665                23466778888888887


Q ss_pred             HHHHHhc----ccC-ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-C----chhHHHHHHHHHhc-CCHHHHHHH
Q 010994          261 KKAEERL----EQK-DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY-I----NRDYITMLEALMKL-GEHEEAEKV  329 (496)
Q Consensus       261 ~~m~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~-~~~~~a~~~  329 (496)
                      .+..+..    ..+ ...+|+.+..+|...|++++|+..++......... +    ..++..+...|... |++++|...
T Consensus        61 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~  140 (292)
T 1qqe_A           61 LKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC  140 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence            7765432    111 14567778888888888888888887665543211 1    24577788888885 888888888


Q ss_pred             HHHHHhcCCCC-C----cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH------hHHHHHHHHHHhcCChHHHHH
Q 010994          330 LKEWELSGNSY-D----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTP------NSWAVVAAGYFDAGKTERGFQ  398 (496)
Q Consensus       330 ~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~  398 (496)
                      +++..+..... +    ..++..+...|.+.|++++|+..|++..+.......      ..|..+..++...|++++|..
T Consensus       141 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  220 (292)
T 1qqe_A          141 YELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR  220 (292)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            88877642111 1    245777888889999999999999998876543222      156778888889999999999


Q ss_pred             HHHHHHHhhhcCCCCCCCHH------HHHHHHHHHh--ccCCHHHHHHHHHHHH
Q 010994          399 CMKAALSVYVEGKGWKPDPK------VITSILSKLG--DEGSVQDVEAFVAALR  444 (496)
Q Consensus       399 ~~~~~~~~~~~~~~~~p~~~------~~~~l~~~~~--~~g~~~~a~~~~~~~~  444 (496)
                      .|+++++       +.|+..      .+..++.++.  ..+++++|...|+.+.
T Consensus       221 ~~~~al~-------l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          221 TLQEGQS-------EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHGGGC-------C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHh-------hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            9999875       444422      3444555553  4456777777765544

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.25  E-value=1.5e-09  Score=94.48  Aligned_cols=246  Identities=11%  Similarity=0.049  Sum_probs=149.7

Q ss_pred             HhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994          211 YGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE  290 (496)
Q Consensus       211 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~  290 (496)
                      ..-.|++..++.-...+.    .......-..+.++|...|+.+..         ....|....+..+.. |...+    
T Consensus        23 ~fy~G~yq~~i~e~~~~~----~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----   84 (310)
T 3mv2_B           23 NYYTGNFVQCLQEIEKFS----KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----   84 (310)
T ss_dssp             HHTTTCHHHHTHHHHTSS----CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred             HHHhhHHHHHHHHHHhcC----ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----
Confidence            334566666665333332    112223333355677777765531         011222223333332 22222    


Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcccHHHHHHHHHhcCchhHHHHHHHHHH
Q 010994          291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN-SYDTRIPNAVIIGYCNNGLVQNAEAILEDLV  369 (496)
Q Consensus       291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  369 (496)
                      ++..+++....+. ++...+..+..++...|++++|.+++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~~-~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDKQ-NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTSC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            5666665554432 4445556777778888888888888888766543 1245566777888888888888888888887


Q ss_pred             hcCCCC-----CHhHHHHHHHH--HHhcC--ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994          370 EKGKAT-----TPNSWAVVAAG--YFDAG--KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFV  440 (496)
Q Consensus       370 ~~~~~p-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  440 (496)
                      +..  |     +..+...+..+  ....|  +..+|..+|+++.+       ..|+..+-..++.++.+.|++++|++.+
T Consensus       164 ~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~-------~~p~~~~~~lLln~~~~~g~~~eAe~~L  234 (310)
T 3mv2_B          164 NAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ-------TFPTWKTQLGLLNLHLQQRNIAEAQGIV  234 (310)
T ss_dssp             HHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT-------TSCSHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             hcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-------hCCCcccHHHHHHHHHHcCCHHHHHHHH
Confidence            753  4     24555555555  33334  78888888888765       3455344444555788888888888888


Q ss_pred             HHHHhc----------CCCCHHHHHHHHHHHHhCCCcHHHHHHHHHhCCCCCChhH
Q 010994          441 AALRTV----------IPMNRQMYHAFIKANIRNGKGVDELLDSMKADGIDEDEET  486 (496)
Q Consensus       441 ~~~~~~----------~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~g~~p~~~t  486 (496)
                      +.+.+.          .|.++.++..+|......|++|.+++.++++  ..|+...
T Consensus       235 ~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk~a~~l~~qL~~--~~P~hp~  288 (310)
T 3mv2_B          235 ELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGLDTEDLTNQLVK--LDHEHAF  288 (310)
T ss_dssp             HHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTCTTHHHHHHHHH--TTCCCHH
T ss_pred             HHHHHhcccccccccCCCCCHHHHHHHHHHHHHhChHHHHHHHHHHH--hCCCChH
Confidence            866553          2667777756665666667788888888887  4566554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.24  E-value=5.5e-09  Score=90.95  Aligned_cols=240  Identities=11%  Similarity=-0.051  Sum_probs=132.9

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHH
Q 010994          143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEI  222 (496)
Q Consensus       143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~  222 (496)
                      -.|++..++.-...+.   .......-..+.+++...|+++...         .-.|....+..+...+ ..+    |+.
T Consensus        25 y~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~   87 (310)
T 3mv2_B           25 YTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIE   87 (310)
T ss_dssp             TTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCH
T ss_pred             HhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHH
Confidence            3566666666222211   1112223334456666667665421         1223333333333322 222    566


Q ss_pred             HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc-cCccchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010994          223 ILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-QKDGIGYNFLISLYASLGNKSEVLRLWDLEKTA  301 (496)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  301 (496)
                      .|++.. ..+ .++..++..+..++...|++++|++++.+....+. .-+...+...+..+.+.|+.+.|.+.++.|...
T Consensus        88 ~l~~l~-~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~  165 (310)
T 3mv2_B           88 ELENLL-KDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA  165 (310)
T ss_dssp             HHHHTT-TTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHH-hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            677665 333 24455555677777777888888887777554433 134556667777777777777777777777554


Q ss_pred             cC---CCCchhHHHHHHHH--HhcC--CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC--
Q 010994          302 CK---RYINRDYITMLEAL--MKLG--EHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG--  372 (496)
Q Consensus       302 ~~---~~~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--  372 (496)
                      .+   ..+..+...+..++  ...|  ++..|..+|+++.+.  .|+......++.++.+.|++++|.+.++.+.+..  
T Consensus       166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~  243 (310)
T 3mv2_B          166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYS  243 (310)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred             CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence            32   00244445555442  2223  777777777777654  3332233344446777777777777777655431  


Q ss_pred             ---C----CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          373 ---K----ATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       373 ---~----~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                         .    +-|+.++..+|......|+  +|.+++.++.+
T Consensus       244 ~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~  281 (310)
T 3mv2_B          244 VEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK  281 (310)
T ss_dssp             TTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred             ccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence               0    1255566455555555565  67777777766

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.23  E-value=2e-10  Score=101.47  Aligned_cols=233  Identities=14%  Similarity=0.064  Sum_probs=149.3

Q ss_pred             hhcCChHHHHHHHHHhhc------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhc-------ccCccchHHHH
Q 010994          212 GARSDLEGMEIILREMES------QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERL-------EQKDGIGYNFL  278 (496)
Q Consensus       212 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-------~~~~~~~~~~l  278 (496)
                      ...|+++.|+..+++...      ..+.+....++..+...|...|++++|...+++..+..       .+....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            345666666666555541      22333456778889999999999999999999886542       12345678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhc-----C--CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCC-Cccc
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTAC-----K--RYINRDYITMLEALMKLGEHEEAEKVLKEWELS------GNSY-DTRI  344 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~-----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~  344 (496)
                      ...|...|++++|...++......     .  ......+..+...+...|++++|...++++.+.      +..| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999999999999999998776652     1  123466788888899999999999999888764      1122 3456


Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhc-------CCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEK-------GKATT-PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-  415 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-  415 (496)
                      +..+...|...|++++|...+++..+.       ...+. ...|..+...+...+....+.. +..+...........| 
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHH
Confidence            778888888999999999999887753       11222 2234444444443333222222 2222211000011122 


Q ss_pred             CHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          416 DPKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       416 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      ...++..+...+...|++++|..++++..+
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            234677778888888888888888887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.14  E-value=2.9e-09  Score=94.54  Aligned_cols=209  Identities=11%  Similarity=0.024  Sum_probs=148.4

Q ss_pred             CCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhc---CCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010994          181 QYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMES---QPHIVL-DWSTYASAAHFYIKANLIDKA  256 (496)
Q Consensus       181 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~-~~~~~~~li~~~~~~~~~~~a  256 (496)
                      ++++|...|++.               ...|...|++++|...|++...   ..+-++ ...+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777765               3456778888888888877651   112212 256788888999999999999


Q ss_pred             HHHHHHHHHhcccC-----ccchHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCC-C----chhHHHHHHHHHhcCCHHH
Q 010994          257 SDVLKKAEERLEQK-----DGIGYNFLISLYASL-GNKSEVLRLWDLEKTACKRY-I----NRDYITMLEALMKLGEHEE  325 (496)
Q Consensus       257 ~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~  325 (496)
                      +..|++..+.....     -..+++.+...|... |++++|+..|++.....+.. +    ..++..+...+.+.|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            99998876543211     135788888999996 99999999999877654321 1    3467888999999999999


Q ss_pred             HHHHHHHHHhcCCCCCcc------cHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC---HhHHHHHHHHHH--hcCCh
Q 010994          326 AEKVLKEWELSGNSYDTR------IPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT---PNSWAVVAAGYF--DAGKT  393 (496)
Q Consensus       326 a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~--~~~~~  393 (496)
                      |...+++..+........      .+..+..++...|++++|...|++..+..+. ++   ...+..++.++.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            999999999865432221      4567778888999999999999998864322 11   113445566665  45678


Q ss_pred             HHHHHHHHHHH
Q 010994          394 ERGFQCMKAAL  404 (496)
Q Consensus       394 ~~a~~~~~~~~  404 (496)
                      ++|+..|+++.
T Consensus       257 ~~A~~~~~~~~  267 (292)
T 1qqe_A          257 SEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHTTSS
T ss_pred             HHHHHHhccCC
Confidence            88888887764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.13  E-value=1.5e-07  Score=89.53  Aligned_cols=362  Identities=10%  Similarity=0.011  Sum_probs=226.7

Q ss_pred             hcc-ChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCC-HHHHH
Q 010994           74 KRK-RFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQ-TDKAL  151 (496)
Q Consensus        74 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~  151 (496)
                      +.| ++..|..+|+.+...-     |.            ++++.+..+|++.....|++..|...+....+.++ .+...
T Consensus         6 ~~~~~i~~aR~vyer~l~~~-----P~------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~   68 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY-----MS------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLY   68 (493)
T ss_dssp             ------CCHHHHHHHHHHHH-----HT------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTH
T ss_pred             HcCcchHHHHHHHHHHHHHC-----CC------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHH
Confidence            345 4788888888887754     21            89999999999999988999999999988888774 46677


Q ss_pred             HHHHHHHHC-CCC-CChhHHHHHHHHHH----hcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC----------
Q 010994          152 SHFRKMKEM-GIA-LSTLTYNDIMCLYS----KTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARS----------  215 (496)
Q Consensus       152 ~~~~~m~~~-g~~-p~~~~~~~l~~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------  215 (496)
                      .+|+..... |.. ++...|...+..+.    ..++.+.+..+|++........-...|...... .+..          
T Consensus        69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~  147 (493)
T 2uy1_A           69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGKKIVG  147 (493)
T ss_dssp             HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHHHHHH
Confidence            888877653 533 36778888887654    245677899999999974221112223322221 1111          


Q ss_pred             ----ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHHHHhcccCccchHHHHHHHHHh
Q 010994          216 ----DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN--L-----IDKASDVLKKAEERLEQKDGIGYNFLISLYAS  284 (496)
Q Consensus       216 ----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~-----~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~  284 (496)
                          .+..|..+++.+. ..-...+...|...+..-...+  -     .+.+..+|+++....+ .+...|...+..+.+
T Consensus       148 ~~~~~y~~ar~~y~~~~-~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~  225 (493)
T 2uy1_A          148 DTLPIFQSSFQRYQQIQ-PLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIG  225 (493)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHH-HHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence                2223344444443 1000013334544444432221  1     3456788998877543 557788888888999


Q ss_pred             cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------CCCcccHHHHHHHH
Q 010994          285 LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGN------------SYDTRIPNAVIIGY  352 (496)
Q Consensus       285 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------~~~~~~~~~l~~~~  352 (496)
                      .|+.+.|..+++..... + .+...+.    .|....+.++.   ++.+.+.-.            .....+|...+..+
T Consensus       226 ~~~~~~ar~i~erAi~~-P-~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~  296 (493)
T 2uy1_A          226 IGQKEKAKKVVERGIEM-S-DGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYV  296 (493)
T ss_dssp             TTCHHHHHHHHHHHHHH-C-CSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhC-C-CcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHH
Confidence            99999999999998888 4 3332222    23322222222   222222100            01124566667767


Q ss_pred             HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccC
Q 010994          353 CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA-GKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEG  431 (496)
Q Consensus       353 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  431 (496)
                      .+.++.+.|..+|++. .. ...+...|...+..-... ++.+.|..+|+.+++      ..+-+...+...+....+.|
T Consensus       297 ~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~------~~~~~~~~~~~yid~e~~~~  368 (493)
T 2uy1_A          297 LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLL------KHPDSTLLKEEFFLFLLRIG  368 (493)
T ss_dssp             HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHH------HCCCCHHHHHHHHHHHHHcC
Confidence            6788899999999999 32 223445554333333333 369999999999998      23223455666777778889


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994          432 SVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK  476 (496)
Q Consensus       432 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~  476 (496)
                      +.+.|..+|+.+.    .....|...+.--...|  +.+..+++++.
T Consensus       369 ~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~  411 (493)
T 2uy1_A          369 DEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKM  411 (493)
T ss_dssp             CHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999873    46778888888777888  56667777765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.13  E-value=3.6e-09  Score=88.65  Aligned_cols=167  Identities=9%  Similarity=-0.032  Sum_probs=92.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhcccCccchHHH----------------HHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 010994          243 AAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNF----------------LISLYASLGNKSEVLRLWDLEKTACKRYI  306 (496)
Q Consensus       243 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  306 (496)
                      ....+...|++++|...|++.....+ .+...|..                +..+|...|++++|+..|+......+ .+
T Consensus        10 ~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~   87 (208)
T 3urz_A           10 KVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-NN   87 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CC
Confidence            34445556666666666666554332 22233333                66666777777777777776666554 45


Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc--hhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 010994          307 NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL--VQNAEAILEDLVEKGKATTPNSWAVVA  384 (496)
Q Consensus       307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~l~  384 (496)
                      ...+..+..++...|++++|...|+++.+..+ .+...+..+...|...|+  .+.+...++....  ..|....+....
T Consensus        88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g  164 (208)
T 3urz_A           88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG  164 (208)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence            56666667777777777777777777666532 244555566655554433  2334444444332  122222333445


Q ss_pred             HHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH
Q 010994          385 AGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT  421 (496)
Q Consensus       385 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~  421 (496)
                      .++...|++++|+..|+++++       +.|+.....
T Consensus       165 ~~~~~~~~~~~A~~~~~~al~-------l~P~~~~~~  194 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVIL-------RFPSTEAQK  194 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTT-------TSCCHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHH-------hCCCHHHHH
Confidence            555566777777777777754       556654333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.12  E-value=6e-09  Score=90.89  Aligned_cols=189  Identities=10%  Similarity=-0.028  Sum_probs=126.3

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc---cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-C-chh
Q 010994          235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD---GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY-I-NRD  309 (496)
Q Consensus       235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~-~~~  309 (496)
                      .+...+..+...+.+.|++++|...|+++....+ .+   ...+..+..+|...|++++|+..|+......+.. . ...
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            4456666677778888888888888888776543 22   4566777777888888888888888777765421 1 244


Q ss_pred             HHHHHHHHHh--------cCCHHHHHHHHHHHHhcCCCCCc-ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHH
Q 010994          310 YITMLEALMK--------LGEHEEAEKVLKEWELSGNSYDT-RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW  380 (496)
Q Consensus       310 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~  380 (496)
                      +..+..++..        .|++++|...|+++.+..  |+. .....+..              +..+...    -...+
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~--------------~~~~~~~----~~~~~  151 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQK--------------IRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHH--------------HHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHH--------------HHHHHHH----HHHHH
Confidence            5566666766        777777777777777653  322 22211111              1111100    01124


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHHHHHHHHHhcc----------CCHHHHHHHHHHHHhc
Q 010994          381 AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVITSILSKLGDE----------GSVQDVEAFVAALRTV  446 (496)
Q Consensus       381 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~  446 (496)
                      ..+...|...|++++|+..|+++++       ..|+    ...+..+..++...          |++++|...++.+.+.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~-------~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFD-------AYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHH-------HCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            6678889999999999999999987       2333    45677777778766          8899999999999887


Q ss_pred             CCCCH
Q 010994          447 IPMNR  451 (496)
Q Consensus       447 ~~~~~  451 (496)
                      .|.+.
T Consensus       225 ~p~~~  229 (261)
T 3qky_A          225 FPDSP  229 (261)
T ss_dssp             CTTCT
T ss_pred             CCCCh
Confidence            77664

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.11  E-value=3.6e-09  Score=92.33  Aligned_cols=186  Identities=8%  Similarity=-0.052  Sum_probs=137.1

Q ss_pred             CChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHhccc--Cccc
Q 010994          199 PDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLD---WSTYASAAHFYIKANLIDKASDVLKKAEERLEQ--KDGI  273 (496)
Q Consensus       199 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~  273 (496)
                      .+...+..+...+.+.|++++|...|+++. ...+ .+   ...+..+..+|...|++++|...|++..+..+.  ....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l-~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVF-TYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHG-GGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            355677778888999999999999999998 4332 23   677888999999999999999999999886442  1235


Q ss_pred             hHHHHHHHHHh--------cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccH
Q 010994          274 GYNFLISLYAS--------LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIP  345 (496)
Q Consensus       274 ~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  345 (496)
                      ++..+..++..        .|++++|+..|+......+ .+..........              ..+...    -...+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~~~~--------------~~~~~~----~~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYP-NHELVDDATQKI--------------RELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCT-TCTTHHHHHHHH--------------HHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCc-CchhHHHHHHHH--------------HHHHHH----HHHHH
Confidence            67778888888        9999999999998888765 222222222111              111100    01124


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhcCCCC--CHhHHHHHHHHHHhc----------CChHHHHHHHHHHHH
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEKGKAT--TPNSWAVVAAGYFDA----------GKTERGFQCMKAALS  405 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~  405 (496)
                      ..+...|.+.|++++|...|+++.+..+..  ....+..+..+|...          |++++|...|+++++
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~  223 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQ  223 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHH
Confidence            567788889999999999999998765432  234677788888766          889999999999987

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.10  E-value=4.6e-09  Score=80.91  Aligned_cols=129  Identities=12%  Similarity=0.136  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF  388 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  388 (496)
                      .+..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|...++++.+.+.. +...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            345556666666666666666666665432 24445555666666666666666666666655432 4555666666666


Q ss_pred             hcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          389 DAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       389 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      ..|++++|...++++..      ..+.+...+..+...+...|++++|...++.+..
T Consensus        81 ~~~~~~~A~~~~~~~~~------~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALE------LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            66666666666666665      1223455566666666666666666666665544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.09  E-value=6.8e-10  Score=87.56  Aligned_cols=143  Identities=10%  Similarity=0.074  Sum_probs=103.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCh
Q 010994          314 LEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKT  393 (496)
Q Consensus       314 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~  393 (496)
                      ...+...|++++|...+....... +-+...+..+...|.+.|++++|...|++.++.++. +..+|..+...|...|++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence            344455677777877777766542 113445566777888888888888888888877655 677888888888888888


Q ss_pred             HHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          394 ERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEA-FVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       394 ~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      ++|+..|+++++       +.| +...+..+...+.+.|++++|.+ ++++..+..|.++.+|......+...|
T Consensus        82 ~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           82 DKAVECYRRSVE-------LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            888888888887       445 45677778888888888776555 457777777788888887777777766

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=8.3e-09  Score=79.41  Aligned_cols=129  Identities=14%  Similarity=0.185  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994          274 GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC  353 (496)
Q Consensus       274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  353 (496)
                      .|..+...+...|++++|..+++.+....+ .+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            355566666667777777777766655543 344556666666666677777777777666553 224445566666666


Q ss_pred             hcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          354 NNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..|++++|...++++.+.... +...+..+...+...|++++|...+++++.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            777777777777766665432 455666666667777777777777766654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.06  E-value=9.4e-09  Score=102.50  Aligned_cols=173  Identities=11%  Similarity=-0.060  Sum_probs=144.2

Q ss_pred             HhcCChHHHHHHHHHHH--------HhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHh
Q 010994          248 IKANLIDKASDVLKKAE--------ERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMK  319 (496)
Q Consensus       248 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  319 (496)
                      ...|++++|++.+++..        +.. +.+...+..+..++...|++++|+..|+......+ .+...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHH
Confidence            77899999999999987        322 35567888899999999999999999998888766 667888899999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHH
Q 010994          320 LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQC  399 (496)
Q Consensus       320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  399 (496)
                      .|++++|...|++..+... .+...+..+..+|.+.|++++ ...|++..+.++. +...|..+..++...|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999998743 267788899999999999999 9999999987765 778999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCC
Q 010994          400 MKAALSVYVEGKGWKPDP-KVITSILSKLGDEGS  432 (496)
Q Consensus       400 ~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~  432 (496)
                      |+++++       ..|+. ..+..+..++...|+
T Consensus       557 ~~~al~-------l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPP-------TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCT-------TSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcc-------cCcccHHHHHHHHHHHHccCC
Confidence            999865       66764 567777777766554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.04  E-value=2.2e-07  Score=81.77  Aligned_cols=219  Identities=6%  Similarity=-0.046  Sum_probs=99.3

Q ss_pred             HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhcccCccchHHHHHHHH----Hhc---CCH
Q 010994          218 EGMEIILREMESQPHIVLDWSTYASAAHFYIKAN--LIDKASDVLKKAEERLEQKDGIGYNFLISLY----ASL---GNK  288 (496)
Q Consensus       218 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~----~~~---~~~  288 (496)
                      ++|+++++.+. ..++ -+..+|+.--..+...|  +++++++.++.+....+ .+..+|+.-...+    ...   +++
T Consensus        50 ~~aL~~t~~~L-~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~  126 (306)
T 3dra_A           50 ERALHITELGI-NELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDP  126 (306)
T ss_dssp             HHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred             HHHHHHHHHHH-HHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCH
Confidence            35555555554 3332 33444555445555555  55555555555554332 3334444433333    333   445


Q ss_pred             HHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHH--HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc------hhH
Q 010994          289 SEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHE--EAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL------VQN  360 (496)
Q Consensus       289 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~  360 (496)
                      ++++.+++.+....+ .+...|+--...+.+.|.++  ++.+.++.+.+..+. |...|+.-...+.+.|+      +++
T Consensus       127 ~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          127 YREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence            555555555544433 33444444444444445444  555555555544322 33444444434444443      445


Q ss_pred             HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH-HHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010994          361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER-GFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAF  439 (496)
Q Consensus       361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  439 (496)
                      +++.+++++..++. |...|+.+...+.+.|+... +..+..++...   +..-..+...+..+...+.+.|+.++|.++
T Consensus       205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~---~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDL---EKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEG---GGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhc---cCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            55555555555444 55555555555555555333 22233333220   000122344444455555555555555555


Q ss_pred             HHHHHh
Q 010994          440 VAALRT  445 (496)
Q Consensus       440 ~~~~~~  445 (496)
                      ++.+.+
T Consensus       281 ~~~l~~  286 (306)
T 3dra_A          281 YDLLKS  286 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.04  E-value=8e-09  Score=86.53  Aligned_cols=161  Identities=9%  Similarity=-0.085  Sum_probs=89.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010994          276 NFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYIT----------------MLEALMKLGEHEEAEKVLKEWELSGNS  339 (496)
Q Consensus       276 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~~~  339 (496)
                      ......+...|++++|+..|+......+ .+...+..                +..++.+.|++++|...+++..+..+ 
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-   85 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAP-   85 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-
Confidence            3445567788888888888887776654 33344444                56666666666666666666665532 


Q ss_pred             CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC--hHHHHHHHHHHHHhhhcCCCCCCCH
Q 010994          340 YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK--TERGFQCMKAALSVYVEGKGWKPDP  417 (496)
Q Consensus       340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~p~~  417 (496)
                      .+...+..+...|...|++++|...|++..+.++. +...|..+...|...|+  .+.+...++.+..       ..|..
T Consensus        86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  157 (208)
T 3urz_A           86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLSS-------PTKMQ  157 (208)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-------CCHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-------CCchh
Confidence            24455566666666666666666666666665443 55566666665554433  2233344433321       11222


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhc
Q 010994          418 KVITSILSKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                      ..+.....++...|++++|...|++..+.
T Consensus       158 ~a~~~~g~~~~~~~~~~~A~~~~~~al~l  186 (208)
T 3urz_A          158 YARYRDGLSKLFTTRYEKARNSLQKVILR  186 (208)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            22333334445556666666666665553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.03  E-value=1.2e-08  Score=101.76  Aligned_cols=176  Identities=9%  Similarity=-0.054  Sum_probs=145.8

Q ss_pred             hhcCChHHHHHHHHHhhc------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 010994          212 GARSDLEGMEIILREMES------QPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASL  285 (496)
Q Consensus       212 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~  285 (496)
                      ...|++++|++.+++...      ....+.+...+..+...|...|++++|...|++..+..+ .+...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG-WRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc-chHHHHHHHHHHHHHc
Confidence            788999999999998860      022235667888899999999999999999999988654 5678899999999999


Q ss_pred             CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHH
Q 010994          286 GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAIL  365 (496)
Q Consensus       286 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  365 (496)
                      |++++|+..|+......+ .+...+..+..++.+.|++++ ...|++..+... .+...+..+..+|.+.|++++|...|
T Consensus       481 g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999999888776 567888999999999999999 999999998743 35678889999999999999999999


Q ss_pred             HHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994          366 EDLVEKGKATTPNSWAVVAAGYFDAGK  392 (496)
Q Consensus       366 ~~~~~~~~~p~~~~~~~l~~~~~~~~~  392 (496)
                      ++..+.++. +...+..+..++...++
T Consensus       558 ~~al~l~P~-~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTSRH-FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred             HhhcccCcc-cHHHHHHHHHHHHccCC
Confidence            999886543 46678888888777665

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.03  E-value=1.8e-07  Score=82.39  Aligned_cols=213  Identities=8%  Similarity=0.028  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHhcccCccchHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCCchhHHHHHHHH----Hhc---CCHH
Q 010994          254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLG--NKSEVLRLWDLEKTACKRYINRDYITMLEAL----MKL---GEHE  324 (496)
Q Consensus       254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~  324 (496)
                      ++|+..++.+....+ .+..+|+.-..++...|  +++++++.++.+....+ .+...|+.-...+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            345555555544332 23334444444444444  55555555555544433 2333333322222    223   4455


Q ss_pred             HHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchh--HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC------hHHH
Q 010994          325 EAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ--NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK------TERG  396 (496)
Q Consensus       325 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------~~~a  396 (496)
                      ++..+++.+.+...+ +..+|+.-.-.+.+.|.++  +++..++++.+.++. |...|+.-...+...+.      ++++
T Consensus       128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHH
Confidence            555555555544322 4444444444444445444  555555555555444 55555544444444444      4555


Q ss_pred             HHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHhcC---CCCHHHHHHHHHHHHhCC--CcHHH
Q 010994          397 FQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQD-VEAFVAALRTVI---PMNRQMYHAFIKANIRNG--KGVDE  470 (496)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g--~~a~~  470 (496)
                      ++.+++++.      -.+-|...|+.+...+.+.|+... +..+.+.+.+..   +.++..+..+.++|.+.|  ++|++
T Consensus       206 l~~~~~aI~------~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~  279 (306)
T 3dra_A          206 LNYVKDKIV------KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT  279 (306)
T ss_dssp             HHHHHHHHH------HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHH------hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence            555555554      122234444444444444444222 333444333321   344455555555555554  45555


Q ss_pred             HHHHHH
Q 010994          471 LLDSMK  476 (496)
Q Consensus       471 ~~~~m~  476 (496)
                      +++.+.
T Consensus       280 ~~~~l~  285 (306)
T 3dra_A          280 VYDLLK  285 (306)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.02  E-value=4.9e-08  Score=82.86  Aligned_cols=188  Identities=13%  Similarity=-0.059  Sum_probs=110.4

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc--cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc--hhHH
Q 010994          236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKD--GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN--RDYI  311 (496)
Q Consensus       236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~  311 (496)
                      +...+..+...+...|++++|...|+++....+...  ...+..+..++.+.|++++|+..|+......+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            345566677888999999999999999887644221  256778888999999999999999988887663222  2344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHH-----------
Q 010994          312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSW-----------  380 (496)
Q Consensus       312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-----------  380 (496)
                      .+..++...|..     .+            ..|..+...+...|++++|...|+++++..+. +...+           
T Consensus        83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~  144 (225)
T 2yhc_A           83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKD  144 (225)
T ss_dssp             HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHH
Confidence            455555442210     00            01112222233445555555555555554322 11111           


Q ss_pred             ------HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          381 ------AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP----KVITSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       381 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                            ..+...|.+.|++++|+..|+++++       ..|+.    ..+..+..++.+.|++++|.+.++.+....|
T Consensus       145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~-------~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLR-------DYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------HCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence                  2345556677777777777777766       22321    3456666677777777777777776655433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.02  E-value=1.1e-08  Score=83.26  Aligned_cols=162  Identities=10%  Similarity=-0.053  Sum_probs=112.2

Q ss_pred             hhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHH-HH
Q 010994          100 DHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCL-YS  177 (496)
Q Consensus       100 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~  177 (496)
                      ........+.+.|++++|...|+++....| +...+..+...+.+.|++++|...|+......  |+...+..+... +.
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH   85 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence            344455667788888888888888887766 57888888999999999999999998876653  344433332222 22


Q ss_pred             hcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChHHH
Q 010994          178 KTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVL-DWSTYASAAHFYIKANLIDKA  256 (496)
Q Consensus       178 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a  256 (496)
                      ..++..+|...+++..+.. +-+...+..+..++...|++++|...|+++. ..++.+ +...+..+...+...|+.++|
T Consensus        86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l-~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNIL-KVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-TTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHH-HhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            2234445677777777642 1246677777788888888888888888877 544322 345677777888888888888


Q ss_pred             HHHHHHHHH
Q 010994          257 SDVLKKAEE  265 (496)
Q Consensus       257 ~~~~~~m~~  265 (496)
                      ...|++...
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887776543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.01  E-value=2.8e-09  Score=84.00  Aligned_cols=142  Identities=6%  Similarity=-0.041  Sum_probs=78.7

Q ss_pred             HHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHH
Q 010994          246 FYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEE  325 (496)
Q Consensus       246 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  325 (496)
                      .+...|++++|+..+.......+ .+...+..+...|.+.|++++|++.|+......+ .+...|..+..++.+.|++++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~~~~   83 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEENTDK   83 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCchHH
Confidence            34445556666666655443221 2334455566666666666666666666555544 445566666666666666666


Q ss_pred             HHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHH-HHHHHhcCCCCCHhHHHHHHHHHHhcC
Q 010994          326 AEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAI-LEDLVEKGKATTPNSWAVVAAGYFDAG  391 (496)
Q Consensus       326 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~~  391 (496)
                      |...|+...+..+ -+...+..+...|.+.|++++|.+. +++..+..+. ++..|......+...|
T Consensus        84 A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           84 AVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence            6666666665532 1345556666666666666554443 4555555433 4555555555555444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.99  E-value=7.6e-09  Score=84.12  Aligned_cols=161  Identities=9%  Similarity=-0.021  Sum_probs=93.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH-HHh
Q 010994          241 ASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA-LMK  319 (496)
Q Consensus       241 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~  319 (496)
                      ..+...+...|++++|...|++..+..+ .+...+..+..++...|++++|+..++......+  +...+...... +..
T Consensus        10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A           10 LKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHh
Confidence            3345556666666666666666544332 3445566666666666666666666665444332  22222111111 112


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCChHHHHH
Q 010994          320 LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT-TPNSWAVVAAGYFDAGKTERGFQ  398 (496)
Q Consensus       320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~  398 (496)
                      .++...|...+++..+..+ .+...+..+...+...|++++|...|+++.+..+.+ +...+..+...+...|+.++|..
T Consensus        87 ~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            2223345666666666532 245666677777777777777777777777665432 34567777777777777777777


Q ss_pred             HHHHHHH
Q 010994          399 CMKAALS  405 (496)
Q Consensus       399 ~~~~~~~  405 (496)
                      .|++++.
T Consensus       166 ~y~~al~  172 (176)
T 2r5s_A          166 KYRRQLY  172 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7777654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.99  E-value=1.2e-07  Score=80.34  Aligned_cols=186  Identities=6%  Similarity=-0.079  Sum_probs=122.2

Q ss_pred             ChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCC-CC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCcc--chH
Q 010994          200 DNFSYRICINSYGARSDLEGMEIILREMESQPHI-VL-DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDG--IGY  275 (496)
Q Consensus       200 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~  275 (496)
                      +...+..+...+.+.|++++|+..|+++. ...+ .+ ....+..+..+|.+.|++++|+..|+++.+..+....  .++
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~-~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALD-NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            44556677788999999999999999998 3322 12 2457778899999999999999999999886543221  245


Q ss_pred             HHHHHHHHh------------------cCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010994          276 NFLISLYAS------------------LGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSG  337 (496)
Q Consensus       276 ~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  337 (496)
                      ..+..++..                  .|++++|...|+......+ .+...........          .+...+.   
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P-~~~~a~~a~~~l~----------~~~~~~~---  147 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP-NSQYTTDATKRLV----------FLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCT-TCTTHHHHHHHHH----------HHHHHHH---
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCc-CChhHHHHHHHHH----------HHHHHHH---
Confidence            555555554                  3455555555555554433 1111111110000          0000000   


Q ss_pred             CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          338 NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT--PNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       338 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                           .....+...|.+.|++++|...|+++.+..+...  ...+..+..++.+.|+.++|.+.++.+..
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~  212 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA  212 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence                 0112456678889999999999999988654311  24688899999999999999999998876

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.97  E-value=8.1e-07  Score=84.53  Aligned_cols=375  Identities=11%  Similarity=0.021  Sum_probs=227.1

Q ss_pred             hhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcC-HHHHHHHHHhchhc---C-CCHHHHHHH
Q 010994           63 GELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHG-FLSAESYFSNLKDD---E-KTYQTYGAL  137 (496)
Q Consensus        63 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~---~-~~~~~~~~l  137 (496)
                      ..|...+..+-. |+++.+..+|+......   ++.+.+...+....+.+. .+.....|+.+...   + .+...|...
T Consensus        16 ~vyer~l~~~P~-~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y   91 (493)
T 2uy1_A           16 AIMEHARRLYMS-KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY   91 (493)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHCCC-CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence            445555555544 89999999999999965   466666666666666553 35566777776653   2 367889888


Q ss_pred             HHHHH----hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-------------CCCCcHHHHHHHHHHCCCCCC
Q 010994          138 LNCYV----RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT-------------GQYEKVPDVLTEMKAKNIFPD  200 (496)
Q Consensus       138 i~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~m~~~~~~p~  200 (496)
                      +..+.    ..|+.+.+.++|++........-...|......-...             +.+..|..+++.+...-...+
T Consensus        92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s  171 (493)
T 2uy1_A           92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS  171 (493)
T ss_dssp             HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence            87754    3567899999999998842211122233322211111             122233444444433100013


Q ss_pred             hhhHHHHHHHHhhcC--C-----hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccc
Q 010994          201 NFSYRICINSYGARS--D-----LEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGI  273 (496)
Q Consensus       201 ~~~~~~li~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  273 (496)
                      ...|...+.--...+  -     .+.+..+|+++. ... +.+...|...+..+.+.|+.+.|..+|++....  +.+..
T Consensus       172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al-~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~  247 (493)
T 2uy1_A          172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYIL-DSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMF  247 (493)
T ss_dssp             HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHH-HHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSH
T ss_pred             HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHH-HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHH
Confidence            335555554432221  1     245677888887 433 255777888888889999999999999999887  23333


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhhc------------CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010994          274 GYNFLISLYASLGNKSEVLRLWDLEKTAC------------KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYD  341 (496)
Q Consensus       274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  341 (496)
                      .|..    |....+.++.   ++.+....            .......|...+....+.++.+.|..+|+.+ +. ...+
T Consensus       248 l~~~----y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~  318 (493)
T 2uy1_A          248 LSLY----YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVG  318 (493)
T ss_dssp             HHHH----HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCC
T ss_pred             HHHH----HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCC
Confidence            3332    2222222222   22222111            0011244666666666788899999999999 32 1223


Q ss_pred             cccHHHHHHHHHh-cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHH
Q 010994          342 TRIPNAVIIGYCN-NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVI  420 (496)
Q Consensus       342 ~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~  420 (496)
                      ..+|......-.. .++.+.|..+|+...+.... +...|...+......|+.+.|..+|+++.          .....|
T Consensus       319 ~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~----------k~~~lw  387 (493)
T 2uy1_A          319 PHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE----------KTSRMW  387 (493)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC----------CBHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH----------HHHHHH
Confidence            3333322222222 34699999999999886432 45566777888888999999999999852          246778


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcC------CCC------------HHHHHHHHHHHHhCC
Q 010994          421 TSILSKLGDEGSVQDVEAFVAALRTVI------PMN------------RQMYHAFIKANIRNG  465 (496)
Q Consensus       421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~------------~~~~~~l~~~~~~~g  465 (496)
                      ...+..-...|+.+.+..++++.....      .|.            ..++..++.-|.-..
T Consensus       388 ~~~~~fE~~~G~~~~~r~v~~~~~~~~~~~~~~~~~~~~~~~~~fe~~~g~l~~~~~~~~~~~  450 (493)
T 2uy1_A          388 DSMIEYEFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRYHCFLDSFNFLD  450 (493)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCBCCCCCC--CCCCCHHHHHHHHHHHHHCBTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhcccccCCcccccccHHHHHHHhhhHHHHHHHhhhhc
Confidence            888877778899999999888665421      111            156777788885544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.96  E-value=1.6e-08  Score=99.09  Aligned_cols=152  Identities=11%  Similarity=-0.059  Sum_probs=105.7

Q ss_pred             cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994          250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV  329 (496)
Q Consensus       250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  329 (496)
                      .|++++|...|++..+..+ .+...|..+...+...|++++|.+.+++.....+ .+...+..+..++...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4678888888888766543 4567788888888888888888888887777655 5567788888888888888888888


Q ss_pred             HHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc---CChHHHHHHHHHHHH
Q 010994          330 LKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA---GKTERGFQCMKAALS  405 (496)
Q Consensus       330 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~  405 (496)
                      +++..+... .+...+..+...|.+.|++++|.+.|++..+.... +...+..+...+...   |+.++|.+.++++++
T Consensus        80 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           80 LQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            888887642 25667778888888888888888888888876544 667788888888888   888888888888877

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.96  E-value=1.2e-08  Score=91.22  Aligned_cols=96  Identities=9%  Similarity=0.104  Sum_probs=58.0

Q ss_pred             ccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 010994           75 RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHF  154 (496)
Q Consensus        75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  154 (496)
                      .|++++|.++++...+..     +..      .+...++++.|...|..             ....|...|++++|...|
T Consensus         4 ~~~~~eA~~~~~~a~k~~-----~~~------~~~~~~~~~~A~~~~~~-------------a~~~~~~~g~~~~A~~~~   59 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYL-----KTS------FMKWKPDYDSAASEYAK-------------AAVAFKNAKQLEQAKDAY   59 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHH-----CCC------SSSCSCCHHHHHHHHHH-------------HHHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHc-----ccc------ccCCCCCHHHHHHHHHH-------------HHHHHHHcCCHHHHHHHH
Confidence            567778888887776643     111      11114666666665543             455677788888888888


Q ss_pred             HHHHHC----CCCC-ChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 010994          155 RKMKEM----GIAL-STLTYNDIMCLYSKTGQYEKVPDVLTEMKA  194 (496)
Q Consensus       155 ~~m~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  194 (496)
                      .+..+.    |-.+ -..+|+.+..+|...|++++|...|++..+
T Consensus        60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~  104 (307)
T 2ifu_A           60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV  104 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            776432    1100 133566666777777777777777766543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.95  E-value=1.9e-08  Score=88.86  Aligned_cols=162  Identities=9%  Similarity=-0.083  Sum_probs=102.1

Q ss_pred             chhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHH-HHHH
Q 010994           99 CDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDI-MCLY  176 (496)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~  176 (496)
                      .........+.+.|++++|...|+++....| +...+..+...+.+.|++++|...+++....  .|+....... ...+
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~l  195 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHHH
Confidence            3344445555666666666666666666666 4666777777777777777777777776554  2333322222 2235


Q ss_pred             HhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHhcCChHH
Q 010994          177 SKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIV-LDWSTYASAAHFYIKANLIDK  255 (496)
Q Consensus       177 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~  255 (496)
                      ...++.+.|...+++..... +.+...+..+...+...|++++|...++++. ..++. .+...+..++..|...|+.++
T Consensus       196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l-~~~p~~~~~~a~~~l~~~~~~~g~~~~  273 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHL-RXDLTAADGQTRXTFQEILAALGTGDA  273 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred             HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHH-hcccccccchHHHHHHHHHHHcCCCCc
Confidence            56666777777777776652 2345666777777777777777777777776 33221 225567777777777777777


Q ss_pred             HHHHHHHHH
Q 010994          256 ASDVLKKAE  264 (496)
Q Consensus       256 a~~~~~~m~  264 (496)
                      |...|++..
T Consensus       274 a~~~~r~al  282 (287)
T 3qou_A          274 LASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.94  E-value=2.7e-08  Score=87.88  Aligned_cols=164  Identities=10%  Similarity=0.012  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994          238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL  317 (496)
Q Consensus       238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  317 (496)
                      ..+..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...++......+ ............+
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p-~~~~~~~~~~~~l  195 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ-DTRYQGLVAQIEL  195 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC-SHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc-chHHHHHHHHHHH
Confidence            3344445555555555555555555544332 3344455555555555555555555554433322 1111111122223


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCChHHH
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT-TPNSWAVVAAGYFDAGKTERG  396 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a  396 (496)
                      ...++.+.|...+++..+.. +.+...+..+...|...|++++|...|.++.+..+.. +...+..++..+...|+.++|
T Consensus       196 ~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          196 LXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             HhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcH
Confidence            34444444555555544442 1233444455555555555555555555555443221 133455555555555555555


Q ss_pred             HHHHHHHH
Q 010994          397 FQCMKAAL  404 (496)
Q Consensus       397 ~~~~~~~~  404 (496)
                      ...|++.+
T Consensus       275 ~~~~r~al  282 (287)
T 3qou_A          275 ASXYRRQL  282 (287)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.91  E-value=2.6e-07  Score=77.51  Aligned_cols=176  Identities=11%  Similarity=0.067  Sum_probs=118.7

Q ss_pred             HHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC----CCCcHHHHHHH
Q 010994          116 SAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG----QYEKVPDVLTE  191 (496)
Q Consensus       116 ~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~  191 (496)
                      +|.++|.+..+. .++..+..|...|...+++++|+..|++..+.|   +...+..|...|.. +    ++++|...|++
T Consensus         4 eA~~~~~~aa~~-g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~   78 (212)
T 3rjv_A            4 EPGSQYQQQAEA-GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEK   78 (212)
T ss_dssp             CTTHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence            345555555543 356777777778878888888888888877764   56777777777776 5    77788888888


Q ss_pred             HHHCCCCCChhhHHHHHHHHhh----cCChHHHHHHHHHhhcCCCCC-CCHHHHHHHHHHHHh----cCChHHHHHHHHH
Q 010994          192 MKAKNIFPDNFSYRICINSYGA----RSDLEGMEIILREMESQPHIV-LDWSTYASAAHFYIK----ANLIDKASDVLKK  262 (496)
Q Consensus       192 m~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~  262 (496)
                      ..+.|   +...+..+...|..    .+++++|..+|++.. +.+.. .+...+..|...|..    .++.++|...|++
T Consensus        79 A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  154 (212)
T 3rjv_A           79 AVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAA-RDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG  154 (212)
T ss_dssp             HHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-SSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred             HHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-HcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            77654   45666677777766    778888888888876 54421 015666667777777    6777888888877


Q ss_pred             HHHhcccCccchHHHHHHHHHhc-C-----CHHHHHHHHHHHHhhc
Q 010994          263 AEERLEQKDGIGYNFLISLYASL-G-----NKSEVLRLWDLEKTAC  302 (496)
Q Consensus       263 m~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~  302 (496)
                      ..+.  ..+...+..+...|... |     +.++|...|+.....+
T Consensus       155 A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          155 SSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            7654  13344566666666543 2     6777777777665554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=2.5e-08  Score=89.18  Aligned_cols=229  Identities=8%  Similarity=0.022  Sum_probs=146.1

Q ss_pred             cCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010994          179 TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASD  258 (496)
Q Consensus       179 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  258 (496)
                      .|++++|.+++++..+... ..         .+...++++.|...|.+.                ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHH
Confidence            4566677777776665311 11         011146666666666554                446777889999988


Q ss_pred             HHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC---CC--chhHHHHHHHHHhcCCHHHHHH
Q 010994          259 VLKKAEERLEQK-----DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR---YI--NRDYITMLEALMKLGEHEEAEK  328 (496)
Q Consensus       259 ~~~~m~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~~~~~~a~~  328 (496)
                      .|.+..+.....     -..+|+.+...|...|++++|+..|+........   +.  ..++..+...|.. |++++|..
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            888775542211     1346788888888889999999888876554321   11  2456777778877 99999998


Q ss_pred             HHHHHHhcCCCC-----CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC----CCC-HhHHHHHHHHHHhcCChHHHHH
Q 010994          329 VLKEWELSGNSY-----DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK----ATT-PNSWAVVAAGYFDAGKTERGFQ  398 (496)
Q Consensus       329 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~p~-~~~~~~l~~~~~~~~~~~~a~~  398 (496)
                      .+++..+.....     ...++..+...|.+.|++++|+..|++..+...    .+. ...+..++..+...|++++|..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            888877542111     134677788888889999999998888775311    111 2256666777777899999999


Q ss_pred             HHHHHHHhhhcCCCCCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 010994          399 CMKAALSVYVEGKGWKPD--PKVITSILSKLGDEGSVQDVEAF  439 (496)
Q Consensus       399 ~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~  439 (496)
                      .|++++ ..   ......  ......++.++ ..|+.+.+..+
T Consensus       217 ~~~~al-~~---p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          217 CVRESY-SI---PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHT-TS---TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHh-CC---CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            998875 11   122112  12344555555 46777666663

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.90  E-value=3.3e-08  Score=96.79  Aligned_cols=165  Identities=12%  Similarity=-0.013  Sum_probs=124.8

Q ss_pred             cCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHH
Q 010994          214 RSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLR  293 (496)
Q Consensus       214 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  293 (496)
                      .|++++|.+.+++.. +... .+...+..+...|...|++++|.+.|++..+..+ .+...+..+..+|...|++++|.+
T Consensus         2 ~g~~~~A~~~~~~al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~   78 (568)
T 2vsy_A            2 TADGPRELLQLRAAV-RHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAV   78 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHH
Confidence            478999999999987 5543 5678899999999999999999999999988653 567889999999999999999999


Q ss_pred             HHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhc---CchhHHHHHHHHHHh
Q 010994          294 LWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNN---GLVQNAEAILEDLVE  370 (496)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~  370 (496)
                      .++......+ .+...+..+..++.+.|++++|...+++..+... .+...+..+...+...   |+.++|...+++..+
T Consensus        79 ~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~  156 (568)
T 2vsy_A           79 LLQQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA  156 (568)
T ss_dssp             HHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence            9998888765 5678899999999999999999999999998743 3567788899999999   999999999999998


Q ss_pred             cCCCCCHhHHHHHH
Q 010994          371 KGKATTPNSWAVVA  384 (496)
Q Consensus       371 ~~~~p~~~~~~~l~  384 (496)
                      .+.. +...|..+.
T Consensus       157 ~~p~-~~~~~~~l~  169 (568)
T 2vsy_A          157 QGVG-AVEPFAFLS  169 (568)
T ss_dssp             HTCC-CSCHHHHTT
T ss_pred             cCCc-ccChHHHhC
Confidence            7654 344444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.85  E-value=1.1e-07  Score=72.22  Aligned_cols=108  Identities=11%  Similarity=-0.023  Sum_probs=71.2

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITS  422 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~  422 (496)
                      .+......|.+.|++++|+..|++.++.++. +...|..+..+|...|++++|+..++++++       +.| +...|..
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~a~~~   86 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIR-------LDSKFIKGYIR   86 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHH-------hhhhhhHHHHH
Confidence            3445566666777777777777776665544 566677777777777777777777777766       233 3556666


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIK  459 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~  459 (496)
                      +..++...|++++|.+.|++..+..|.+...+..|..
T Consensus        87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~  123 (126)
T 4gco_A           87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRN  123 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence            6677777777777777777666666666666655544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.85  E-value=1e-06  Score=78.11  Aligned_cols=168  Identities=11%  Similarity=-0.028  Sum_probs=109.6

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcCC-CCch----hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----ccHHH
Q 010994          278 LISLYASLGNKSEVLRLWDLEKTACKR-YINR----DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDT-----RIPNA  347 (496)
Q Consensus       278 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~  347 (496)
                      .+..+...|++++|..+++........ ++..    .+..+...+...|++++|...++++.+.....+.     .+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            355667777888888777766654321 1111    2223555566667888888888888764322221     25777


Q ss_pred             HHHHHHhcCchhHHHHHHHHHHhc-----CCCC-CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH
Q 010994          348 VIIGYCNNGLVQNAEAILEDLVEK-----GKAT-TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT  421 (496)
Q Consensus       348 l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~  421 (496)
                      +...|...|++++|...|+++.+.     +..+ ...+|..+...|...|++++|+..++++++..........-...+.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888888888888888888887631     1111 1236778888888899999999888888873322212222256777


Q ss_pred             HHHHHHhccCC-HHHHHHHHHHHHh
Q 010994          422 SILSKLGDEGS-VQDVEAFVAALRT  445 (496)
Q Consensus       422 ~l~~~~~~~g~-~~~a~~~~~~~~~  445 (496)
                      .+..++.+.|+ +++|...+++...
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            88888888884 5888888876543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.84  E-value=5.3e-07  Score=79.92  Aligned_cols=62  Identities=5%  Similarity=-0.132  Sum_probs=32.9

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhc----CCCCC-HhHHHHHHHHHHhcCC-hHHHHHHHHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEK----GKATT-PNSWAVVAAGYFDAGK-TERGFQCMKAALS  405 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~  405 (496)
                      ++..+...|.+.|++++|...+++..+.    +..+. ..+|..+...|...|+ +++|.+.+++++.
T Consensus       198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            4445555555555555555555554421    11111 3456666666666663 4666666666655

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.84  E-value=1.9e-07  Score=78.28  Aligned_cols=174  Identities=9%  Similarity=0.027  Sum_probs=118.2

Q ss_pred             HHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC----CHHHHHHHH
Q 010994          255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLG----EHEEAEKVL  330 (496)
Q Consensus       255 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~  330 (496)
                      +|.+.|++..+.   -+...+..+...|...+++++|+..|+.....+   +...+..+...|.. +    ++++|..+|
T Consensus         4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            456667666654   356677777777777888888888888766542   45566666666666 5    788888888


Q ss_pred             HHHHhcCCCCCcccHHHHHHHHHh----cCchhHHHHHHHHHHhcCCC-CCHhHHHHHHHHHHh----cCChHHHHHHHH
Q 010994          331 KEWELSGNSYDTRIPNAVIIGYCN----NGLVQNAEAILEDLVEKGKA-TTPNSWAVVAAGYFD----AGKTERGFQCMK  401 (496)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~~~~~~a~~~~~  401 (496)
                      ++..+.|   +...+..+...|..    .+++++|..+|++..+.|.. .+...+..|...|..    .++.++|+.+|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            8877654   45566667767766    67788888888877776521 026777788888887    777888888888


Q ss_pred             HHHHhhhcCCCCCCCHHHHHHHHHHHhcc-C-----CHHHHHHHHHHHHh
Q 010994          402 AALSVYVEGKGWKPDPKVITSILSKLGDE-G-----SVQDVEAFVAALRT  445 (496)
Q Consensus       402 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~  445 (496)
                      ++.+     .  ..+...+..|...|... |     +.++|...|+...+
T Consensus       154 ~A~~-----~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~  196 (212)
T 3rjv_A          154 GSSS-----L--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCL  196 (212)
T ss_dssp             HHHH-----T--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHH
T ss_pred             HHHH-----c--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHH
Confidence            8876     2  33444555566555432 2     77777777776655

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.79  E-value=2.8e-07  Score=69.48  Aligned_cols=115  Identities=11%  Similarity=0.155  Sum_probs=77.4

Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      ..+..+...+...|++++|...++++.+.... +..++..+...+...|++++|...++++..      ..+.+..++..
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~   82 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE------LDPNNAEAWYN   82 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------hCCccHHHHHH
Confidence            45556666677777777777777777665432 556677777777777777777777777766      22335566667


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRN  464 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  464 (496)
                      +...+...|++++|...++.+....|.+...+..+...+...
T Consensus        83 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           83 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            777777777777777777777666666666666666665543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.77  E-value=1.8e-06  Score=76.76  Aligned_cols=174  Identities=14%  Similarity=0.064  Sum_probs=110.6

Q ss_pred             HhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhc-CHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhc-C-CHH
Q 010994           73 RKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVH-GFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQ-R-QTD  148 (496)
Q Consensus        73 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~-g-~~~  148 (496)
                      .+.+..++|+++++.++..++  -........-.++...+ .+++++.+++.+....| +..+|+.-..++.+. + +++
T Consensus        65 ~~~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             HhCCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChH
Confidence            334455688888888888652  23333444455555666 48888888888887776 577777766666665 6 778


Q ss_pred             HHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC--------cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCC----
Q 010994          149 KALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE--------KVPDVLTEMKAKNIFPDNFSYRICINSYGARSD----  216 (496)
Q Consensus       149 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~----  216 (496)
                      +++.+++.+.+...+ |..+|+.-.-.+.+.|.++        ++++.++++.+..+ -|...|+.....+.+.++    
T Consensus       143 ~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccc
Confidence            888888888776544 7777776666666666666        67777777776543 255666666666666554    


Q ss_pred             ---hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 010994          217 ---LEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL  252 (496)
Q Consensus       217 ---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  252 (496)
                         ++++++.+++.. ..++ -|...|+.+-..+.+.|+
T Consensus       221 ~~~~~eELe~~~~aI-~~~P-~n~SaW~Ylr~Ll~~~~~  257 (349)
T 3q7a_A          221 SRSLQDELIYILKSI-HLIP-HNVSAWNYLRGFLKHFSL  257 (349)
T ss_dssp             HHHHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHhcCC
Confidence               456666666655 3333 455666555555554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.75  E-value=2.4e-07  Score=70.21  Aligned_cols=111  Identities=9%  Similarity=-0.027  Sum_probs=95.7

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994          378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF  457 (496)
Q Consensus       378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  457 (496)
                      ..+......|.+.|++++|++.|+++++      -.+.+...+..+..++.+.|++++|...+++..+..|.+...|..+
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVK------RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4677889999999999999999999998      2334678899999999999999999999999998889999999999


Q ss_pred             HHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhhhcC
Q 010994          458 IKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCTMEK  496 (496)
Q Consensus       458 ~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~~~k  496 (496)
                      +.+|...|  ++|++.|++..+  +.|+......-+..|.|
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~~lr  126 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQ--VDPSNEEAREGVRNCLR  126 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHHhcC
Confidence            99999999  899999999988  56887765555554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.75  E-value=2.6e-06  Score=75.43  Aligned_cols=170  Identities=11%  Similarity=-0.016  Sum_probs=104.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc-----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----cc
Q 010994          274 GYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN-----RDYITMLEALMKLGEHEEAEKVLKEWELSGNS-YD----TR  343 (496)
Q Consensus       274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~  343 (496)
                      .+...+..+...|++++|.+.+............     ..+..+...+...|++++|...+++..+.... .+    ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3444556666777777777777655554331111     11333455566677788888877777643211 11    23


Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHh---cCCC-C--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVE---KGKA-T--TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-  416 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-  416 (496)
                      +++.+...|...|++++|...|++..+   .... +  ...++..+...|...|++++|+..+++++..... .+.... 
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~-~~~~~~~  235 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-INSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTBCSSH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCcHHHH
Confidence            667777778888888888888877762   2111 1  1147777888888888888888888888763211 111111 


Q ss_pred             HHHHHHHHHHHhccCCHHHH-HHHHHHHH
Q 010994          417 PKVITSILSKLGDEGSVQDV-EAFVAALR  444 (496)
Q Consensus       417 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~  444 (496)
                      ..++..+..++.+.|++++| ...+++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            45677777788888888888 66666544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.75  E-value=3.8e-06  Score=74.73  Aligned_cols=228  Identities=9%  Similarity=-0.002  Sum_probs=149.5

Q ss_pred             cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-C-CHHHH
Q 010994          250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLG-NKSEVLRLWDLEKTACKRYINRDYITMLEALMKL-G-EHEEA  326 (496)
Q Consensus       250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a  326 (496)
                      .+..++|+++++++....+ .+..+|+.--..+...| .+++++.+++.+....+ .+...|+.-...+.+. + +++++
T Consensus        67 ~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHH
Confidence            3444567777777776543 44556666666666666 47778888777766555 4555666555555555 5 67778


Q ss_pred             HHHHHHHHhcCCCCCcccHHHHHHHHHhcCchh--------HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC------
Q 010994          327 EKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQ--------NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK------  392 (496)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~------  392 (496)
                      ..+++.+.+... -|...|+--.-.+.+.|.++        ++++.++++++.++. |...|+.....+.+.+.      
T Consensus       145 L~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~  222 (349)
T 3q7a_A          145 IEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR  222 (349)
T ss_dssp             HHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred             HHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence            888887776542 25556655555555555555        889999999988777 88899988888888776      


Q ss_pred             -hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCH--------------------HHHHHHHHHHHhcC----
Q 010994          393 -TERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSV--------------------QDVEAFVAALRTVI----  447 (496)
Q Consensus       393 -~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~----  447 (496)
                       ++++++++++++.      -.+-|...|+.+-..+.+.|+.                    .....+...+....    
T Consensus       223 ~~~eELe~~~~aI~------~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (349)
T 3q7a_A          223 SLQDELIYILKSIH------LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED  296 (349)
T ss_dssp             HHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred             HHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence             6889999999887      2334566776666666555543                    22333333332222    


Q ss_pred             --CCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHH
Q 010994          448 --PMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKE  488 (496)
Q Consensus       448 --~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~  488 (496)
                        .+++..+..|++.|...|  ++|.++++.+.+. ..|=..-|.
T Consensus       297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw  340 (349)
T 3q7a_A          297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYW  340 (349)
T ss_dssp             CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHH
T ss_pred             cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHH
Confidence              467788999999999888  7899999998643 445444433

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.74  E-value=5e-07  Score=75.77  Aligned_cols=135  Identities=13%  Similarity=0.069  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF  388 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  388 (496)
                      .+..+...+...|++++|...+++..    .|+...+..+...|...|++++|...|++..+.... +...|..+...|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence            35567788889999999999998773    567788999999999999999999999999987644 7788999999999


Q ss_pred             hcCChHHHHHHHHHHHHhhhcCCC----------CCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 010994          389 DAGKTERGFQCMKAALSVYVEGKG----------WKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM  449 (496)
Q Consensus       389 ~~~~~~~a~~~~~~~~~~~~~~~~----------~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  449 (496)
                      ..|++++|+..|+++++..- +..          ..| ....+..+..++...|++++|...|+......|.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLR-GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTT-TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HcccHHHHHHHHHHHHHhCC-CccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            99999999999999997110 000          111 1267888889999999999999999988875543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.73  E-value=1.1e-06  Score=73.56  Aligned_cols=92  Identities=9%  Similarity=-0.033  Sum_probs=48.9

Q ss_pred             HHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHh
Q 010994          205 RICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYAS  284 (496)
Q Consensus       205 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~  284 (496)
                      ..+...+...|++++|...|++..     .|+...+..+..+|...|++++|...|++.....+ .+...|..+..++..
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence            344445555566666665555553     23445555555555555666666555555554332 334455555555555


Q ss_pred             cCCHHHHHHHHHHHHhhc
Q 010994          285 LGNKSEVLRLWDLEKTAC  302 (496)
Q Consensus       285 ~~~~~~a~~~~~~~~~~~  302 (496)
                      .|++++|+..|+......
T Consensus        84 ~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhC
Confidence            555555555555554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.73  E-value=1.1e-05  Score=71.36  Aligned_cols=197  Identities=10%  Similarity=-0.031  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHhcccCccchHHHHHHHHHhcC--CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC-HHHHHHHH
Q 010994          254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLG--NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE-HEEAEKVL  330 (496)
Q Consensus       254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~  330 (496)
                      ++++.+++.+....+ .+..+|+.-...+...+  .+++++.+++.+....+ -+...|+--...+...|. ++++.+.+
T Consensus        91 ~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           91 KAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            444444444444332 34444444444444444  24555555555544443 334444444444444444 35555555


Q ss_pred             HHHHhcCCCCCcccHHHHHHHHHhc--------------CchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc------
Q 010994          331 KEWELSGNSYDTRIPNAVIIGYCNN--------------GLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA------  390 (496)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~------  390 (496)
                      +.+.+..+. |...|+.....+.+.              +.++++++.+.+.....+. |...|+.+-..+.+.      
T Consensus       169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~  246 (331)
T 3dss_A          169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCEL  246 (331)
T ss_dssp             HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGC
T ss_pred             HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCcccc
Confidence            555544322 334444333333322              4577888888888877665 777777665555554      


Q ss_pred             -----CChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHH---HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010994          391 -----GKTERGFQCMKAALSVYVEGKGWKPDPK-VITS---ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKAN  461 (496)
Q Consensus       391 -----~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~---l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  461 (496)
                           +.++++++.++++++       ..|+.. .+..   +..+....|..+++...+.++.+..|....-|.-+...+
T Consensus       247 ~~~~~~~l~~el~~~~elle-------~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          247 SVEKSTVLQSELESCKELQE-------LEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHh-------hCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence                 457889999999987       556542 2222   222233467778888889888887777777776665544

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.72  E-value=1.3e-07  Score=73.96  Aligned_cols=95  Identities=14%  Similarity=0.097  Sum_probs=52.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF  388 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  388 (496)
                      .+..+...+.+.|++++|...|+.+.+..+ .+...|..+..+|...|++++|...|++..+.++. ++..|..+..+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence            344455555555555555555555555431 24445555555555556666666666555554433 4455555555666


Q ss_pred             hcCChHHHHHHHHHHHH
Q 010994          389 DAGKTERGFQCMKAALS  405 (496)
Q Consensus       389 ~~~~~~~a~~~~~~~~~  405 (496)
                      ..|++++|+..|+++++
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            66666666666666554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.71  E-value=1.1e-07  Score=83.57  Aligned_cols=194  Identities=9%  Similarity=-0.015  Sum_probs=117.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994          236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE  315 (496)
Q Consensus       236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  315 (496)
                      +...+..+...+...|++++|...|++.....+ .+...|..+..+|...|++++|...++......+ .+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            455666677777888888888888887776543 4566777788888888888888888887766544 45567777788


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994          316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER  395 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  395 (496)
                      ++...|++++|...+....+.... +...+...+....+.   ..+.. +..........+......+. .+ ..|+.++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLT-RL-IAAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHH-HH-HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHH-HH-HHHHHHH
Confidence            888888888888888877764321 111222222222211   11111 12222232333444433332 22 2678888


Q ss_pred             HHHHHHHHHHhhhcCCCCCCCHHHH-HHHHHHHhcc-CCHHHHHHHHHHHHh
Q 010994          396 GFQCMKAALSVYVEGKGWKPDPKVI-TSILSKLGDE-GSVQDVEAFVAALRT  445 (496)
Q Consensus       396 a~~~~~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~~~~  445 (496)
                      |++.++++++       ..|+.... ..+...+.+. +.+++|.++|+...+
T Consensus       154 A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          154 ELEECQRNHE-------GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HHTTTSGGGT-------TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHhhhc-------cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            8888888765       45655433 3333333333 667888888886654

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.70  E-value=2.9e-07  Score=70.48  Aligned_cols=116  Identities=7%  Similarity=-0.045  Sum_probs=73.8

Q ss_pred             cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHH
Q 010994          342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVIT  421 (496)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~  421 (496)
                      ...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|+..++++++      -.+.+...+.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~   88 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQ------LEPTFIKGYT   88 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHH------HCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHH------hCCCchHHHH
Confidence            344555666666677777777777776665433 556666677777777777777777777765      1223455666


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhC
Q 010994          422 SILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRN  464 (496)
Q Consensus       422 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~  464 (496)
                      .+..++...|++++|.+.+++.....|.+...+..+..++.+.
T Consensus        89 ~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           89 RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            6666777777777777777766665555556666666555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.70  E-value=1.7e-06  Score=76.70  Aligned_cols=167  Identities=5%  Similarity=-0.129  Sum_probs=118.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCC-C----ch
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKD-----GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRY-I----NR  308 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~  308 (496)
                      .+...+..+...|++++|.+.+.+..+.....+     ...+..+...+...|++++|+..++......... +    ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344566777888888888888877665432211     1223445566777889999999888776543211 1    24


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCC-----cccHHHHHHHHHhcCchhHHHHHHHHHHhcC----CCC-CH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSG-NSYD-----TRIPNAVIIGYCNNGLVQNAEAILEDLVEKG----KAT-TP  377 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p-~~  377 (496)
                      +++.+...|...|++++|...+++..+.. ..|+     ..++..+...|...|++++|...+++..+..    ... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            67788888999999999999998887320 0122     2577888889999999999999999876532    111 15


Q ss_pred             hHHHHHHHHHHhcCChHHH-HHHHHHHHH
Q 010994          378 NSWAVVAAGYFDAGKTERG-FQCMKAALS  405 (496)
Q Consensus       378 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~  405 (496)
                      .+|..+...|...|++++| ...+++++.
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6788999999999999999 788888876

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.69  E-value=4.4e-07  Score=75.40  Aligned_cols=61  Identities=11%  Similarity=-0.074  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCC-CCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGK-ATT----PNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +..+...+...|++++|...+++..+... ..+    ..++..+...+...|++++|.+.+++++.
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            34444445555555555555554432100 001    12345555666666666666666666554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.69  E-value=7.1e-07  Score=71.32  Aligned_cols=128  Identities=15%  Similarity=0.048  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994          308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY  387 (496)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  387 (496)
                      ..+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+.... +...|..+...+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            345556666667777777777777766653 224555666666666777777777777776665433 556666666677


Q ss_pred             HhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHH--HHHHHHhccCCHHHHHHHHHHHH
Q 010994          388 FDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVIT--SILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      ...|++++|...+++++.       ..| +...+.  .....+...|++++|...+....
T Consensus        92 ~~~~~~~~A~~~~~~a~~-------~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVK-------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            777777777777777665       222 333332  22333555666666666666543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.68  E-value=6.3e-07  Score=68.19  Aligned_cols=116  Identities=13%  Similarity=-0.010  Sum_probs=74.8

Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      ..+..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++++.      ..+.+...+..
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~   85 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAIC------IDPAYSKAYGR   85 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHh------cCccCHHHHHH
Confidence            34555566666667777777777766665432 556666677777777777777777777765      12234556666


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          423 ILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      +...+...|++++|...++......|.+...+..+..++.+.|
T Consensus        86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  128 (131)
T 2vyi_A           86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR  128 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence            6667777777777777777666656666666666666665544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.68  E-value=1.7e-07  Score=76.08  Aligned_cols=125  Identities=9%  Similarity=-0.007  Sum_probs=85.0

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHH-HHhcCCh--H
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG-YFDAGKT--E  394 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~--~  394 (496)
                      ...|++++|...++...+.. +.+...+..+...|...|++++|...|++..+.++. +...+..+... +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence            45677777887777777653 235567777777788888888888888887766543 56677777777 6677777  8


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994          395 RGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN  450 (496)
Q Consensus       395 ~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  450 (496)
                      +|...+++++.      ..+.+...+..+...+...|++++|...++.+....|.+
T Consensus        99 ~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  148 (177)
T 2e2e_A           99 QTRAMIDKALA------LDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR  148 (177)
T ss_dssp             HHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred             HHHHHHHHHHH------hCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence            88888888776      122345667777777778888888888888777655544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.67  E-value=1.8e-07  Score=77.73  Aligned_cols=161  Identities=10%  Similarity=-0.039  Sum_probs=101.3

Q ss_pred             hcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC-CCCcccHHHHHHHHHhcCch
Q 010994          284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS----GN-SYDTRIPNAVIIGYCNNGLV  358 (496)
Q Consensus       284 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~  358 (496)
                      ..|++++|.++++.... .+......+..+...+...|++++|...+++..+.    +. .....++..+...|...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            45566666664432222 22223345566666666667777766666665541    11 11234566777788888888


Q ss_pred             hHHHHHHHHHHhc---CC-CC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC
Q 010994          359 QNAEAILEDLVEK---GK-AT--TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS  432 (496)
Q Consensus       359 ~~a~~~~~~~~~~---~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  432 (496)
                      ++|...+++..+.   .. .|  ....+..+...+...|++++|...+++++...........-..++..+...+...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            8888888876653   11 11  234678888999999999999999999986321111111112346778888999999


Q ss_pred             HHHHHHHHHHHHh
Q 010994          433 VQDVEAFVAALRT  445 (496)
Q Consensus       433 ~~~a~~~~~~~~~  445 (496)
                      +++|...+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999987655

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.67  E-value=9e-07  Score=70.71  Aligned_cols=129  Identities=9%  Similarity=-0.125  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHH
Q 010994          274 GYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYC  353 (496)
Q Consensus       274 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  353 (496)
                      .+..+...+...|++++|...|+......+ .+...+..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            344555555556666666666665555433 344555556666666666666666666665543 224455666666666


Q ss_pred             hcCchhHHHHHHHHHHhcCCCCCHhHHHHH--HHHHHhcCChHHHHHHHHHHHH
Q 010994          354 NNGLVQNAEAILEDLVEKGKATTPNSWAVV--AAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       354 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..|++++|...|++..+..+. +...+..+  +..+...|++++|+..+.+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            677777777777766665433 34444333  3335566777777777766554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.65  E-value=1.5e-07  Score=82.73  Aligned_cols=193  Identities=9%  Similarity=-0.072  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHH
Q 010994          202 FSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISL  281 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~  281 (496)
                      ..+..+...+.+.|++++|...|++.. .... .+...|..+..+|.+.|++++|...+++..+..+ .+...+..+..+
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~   81 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAI-TRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC   81 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            334444444555555555555555444 2221 2444445555555555555555555555444322 233445555555


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994          282 YASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA  361 (496)
Q Consensus       282 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  361 (496)
                      +...|++++|...|+......+ .+...+...+....+.   ..+... ..........+......+. .+ ..|+.++|
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~i~~~l~-~l-~~~~~~~A  154 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAK-EQRLNFGDDIPSALRI---AKKKRW-NSIEERRIHQESELHSYLT-RL-IAAERERE  154 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHH---HHHHHH-HHHHHTCCCCCCHHHHHHH-HH-HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHH---HHHHHH-HHHHHHHHhhhHHHHHHHH-HH-HHHHHHHH
Confidence            5555555555555554444332 1111111111111110   111111 1111222222333322222 22 25677777


Q ss_pred             HHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 010994          362 EAILEDLVEKGKATTPNSWAVVAAGYFDA-GKTERGFQCMKAALS  405 (496)
Q Consensus       362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~  405 (496)
                      .+.++...+.++. +......+...+.+. +.+++|.++|.++.+
T Consensus       155 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          155 LEECQRNHEGHED-DGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HTTTSGGGTTTSC-HHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHhhhccccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7777666654321 223333333333333 556677777776654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.63  E-value=3.7e-07  Score=78.44  Aligned_cols=201  Identities=7%  Similarity=-0.075  Sum_probs=133.4

Q ss_pred             hcCChHHHHHHHHHHHHhcccCccchHHHH-------HHHHHhcCCHHHHHHHHHHHHhhcC-----CCC----------
Q 010994          249 KANLIDKASDVLKKAEERLEQKDGIGYNFL-------ISLYASLGNKSEVLRLWDLEKTACK-----RYI----------  306 (496)
Q Consensus       249 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~----------  306 (496)
                      ..++...|.+.|.+.....+ -....|..+       ...+...++..+++..+.......+     ..+          
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            46777777777777766543 445566666       4555555555555555553333111     000          


Q ss_pred             -----chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC--HhH
Q 010994          307 -----NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT--PNS  379 (496)
Q Consensus       307 -----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~  379 (496)
                           ..........+...|++++|.++|..+...+  |+......+...+.+.+++++|+..|+...... .|.  ...
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a  173 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA  173 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence                 1123345677788899999999998887654  333255566667888999999999998554431 111  236


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994          380 WAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD--PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF  457 (496)
Q Consensus       380 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  457 (496)
                      +..+..++...|++++|+..|+++..     ....|.  .........++.+.|+.++|...|+++....|. ...+..|
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~-----g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEAND-----SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT-----STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhc-----CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            77888899999999999999999875     222254  345666777888999999999999988886655 6666655


Q ss_pred             HH
Q 010994          458 IK  459 (496)
Q Consensus       458 ~~  459 (496)
                      .+
T Consensus       248 ~~  249 (282)
T 4f3v_A          248 KD  249 (282)
T ss_dssp             HC
T ss_pred             hC
Confidence            43

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.62  E-value=4.9e-07  Score=70.72  Aligned_cols=99  Identities=10%  Similarity=-0.060  Sum_probs=74.9

Q ss_pred             cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHH
Q 010994          342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVI  420 (496)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~  420 (496)
                      ...+..+...+.+.|++++|...|+++.+.++. +...|..+..+|...|++++|+..|+++++       +.| +...+
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~-------l~P~~~~~~  107 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFA-------LGKNDYTPV  107 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSSSCCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHh-------hCCCCcHHH
Confidence            345666777778888888888888888877655 677788888888888888888888888876       344 45677


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          421 TSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                      ..+..++...|++++|...|++.....|
T Consensus       108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          108 FHTGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            7777888888888888888887776543

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.62  E-value=2.2e-07  Score=72.76  Aligned_cols=99  Identities=10%  Similarity=0.100  Sum_probs=61.5

Q ss_pred             cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHH
Q 010994          342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVI  420 (496)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~  420 (496)
                      ...+..+...+.+.|++++|...|++....++. +...|..+..+|...|++++|+..|++++.       +.| +...+
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------l~p~~~~~~   92 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAV-------MDIXEPRFP   92 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSTTCTHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-------cCCCCchHH
Confidence            334455556666666777777776666665443 566666666666677777777777776665       223 34556


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          421 TSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                      ..+..++...|++++|...|+......|
T Consensus        93 ~~lg~~~~~~g~~~~A~~~~~~al~~~p  120 (148)
T 2vgx_A           93 FHAAECLLQXGELAEAESGLFLAQELIA  120 (148)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            6666666666777777776666555433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.62  E-value=2.8e-07  Score=74.81  Aligned_cols=119  Identities=8%  Similarity=0.051  Sum_probs=71.4

Q ss_pred             hcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH-HHhcCch--hH
Q 010994          284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG-YCNNGLV--QN  360 (496)
Q Consensus       284 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~  360 (496)
                      ..|++++|...++......+ .+...+..+...|...|++++|...++...+... .+...+..+... +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence            34555556666655554443 3445556666666666666666666666655432 234455555555 5566776  77


Q ss_pred             HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      |...++++.+.++. +...+..+...|...|++++|...|++++.
T Consensus       100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A          100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            77777777765443 566677777777777777777777777776

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.61  E-value=1.6e-06  Score=64.45  Aligned_cols=110  Identities=8%  Similarity=-0.054  Sum_probs=68.8

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI  423 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l  423 (496)
                      .+..+...+...|++++|...|++..+..+. +...+..+...+...|++++|...+++++.      ..+.+...+..+
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~   78 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD------LKPDWGKGYSRK   78 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHH------hCcccHHHHHHH
Confidence            4455556666667777777777666665433 556666666677777777777777777665      122245566666


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          424 LSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       424 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                      ..++...|++++|...++...+..|.+...+..+...
T Consensus        79 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  115 (118)
T 1elw_A           79 AAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence            6667777777777777776666555565555554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.61  E-value=9.6e-08  Score=74.85  Aligned_cols=107  Identities=10%  Similarity=-0.037  Sum_probs=90.5

Q ss_pred             HHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 010994          364 ILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAAL  443 (496)
Q Consensus       364 ~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  443 (496)
                      .|+++.+..+. +...+..+...+...|++++|+..|++++.      .-+.+...+..+..++...|++++|...|++.
T Consensus         9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   81 (148)
T 2vgx_A            9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCV------LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYG   81 (148)
T ss_dssp             SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHH------cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34555544322 456778888999999999999999999987      23346778889999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994          444 RTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA  477 (496)
Q Consensus       444 ~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~  477 (496)
                      ....|.++..|..+..+|...|  ++|...|++..+
T Consensus        82 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A           82 AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9888899999999999999999  899999999876

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.60  E-value=1.5e-06  Score=65.38  Aligned_cols=95  Identities=14%  Similarity=0.090  Sum_probs=40.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh
Q 010994          275 YNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN  354 (496)
Q Consensus       275 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  354 (496)
                      |..+...+...|++++|.+.++.+....+ .+...+..+...+...|++++|...++.+.+.. +.+...+..+...|..
T Consensus        12 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           12 WYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence            33333444444444444444443333322 223333444444444444444444444444332 1123334444444455


Q ss_pred             cCchhHHHHHHHHHHhc
Q 010994          355 NGLVQNAEAILEDLVEK  371 (496)
Q Consensus       355 ~g~~~~a~~~~~~~~~~  371 (496)
                      .|++++|...++++.+.
T Consensus        90 ~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           90 QGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHh
Confidence            55555555555554443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.59  E-value=3.3e-07  Score=78.69  Aligned_cols=186  Identities=12%  Similarity=0.083  Sum_probs=85.3

Q ss_pred             hhcCHHHHHHHHHhchhcCCC-HHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCCh---------------
Q 010994          110 RVHGFLSAESYFSNLKDDEKT-YQTYGAL-------LNCYVRQRQTDKALSHFRKMKEMGIALST---------------  166 (496)
Q Consensus       110 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------  166 (496)
                      ..++...|.+.|.++...+|+ ...|..+       ...+.+.++..+++..+..-.+  +.|+.               
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            457777777777777777774 7777766       4555555555555444443322  22221               


Q ss_pred             -------hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCC--CH
Q 010994          167 -------LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVL--DW  237 (496)
Q Consensus       167 -------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~  237 (496)
                             ..+-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+... ... .|  ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~-~~~-d~~~~~  171 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAG-KWP-DKFLAG  171 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGG-GCS-CHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhh-ccC-CcccHH
Confidence                   111223344444555555555554444322  222233333334445555555555554333 111 01  01


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC--ccchHHHHHHHHHhcCCHHHHHHHHHHHHhh
Q 010994          238 STYASAAHFYIKANLIDKASDVLKKAEERLEQK--DGIGYNFLISLYASLGNKSEVLRLWDLEKTA  301 (496)
Q Consensus       238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  301 (496)
                      ..+..+..++...|++++|+..|++.......|  ..........++.+.|+.++|..+|+.+...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            233444445555555555555555444211102  1223334444444555555555555544443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.59  E-value=1.7e-06  Score=65.55  Aligned_cols=94  Identities=11%  Similarity=0.001  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSI  423 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l  423 (496)
                      +..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..++++++       +.| +...+..+
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l   78 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIE-------KDPNFVRAYIRK   78 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCcHHHHHHH
Confidence            344445555556666666666655554433 455555666666666666666666666655       222 34455555


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhc
Q 010994          424 LSKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       424 ~~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                      ..++...|++++|...|++....
T Consensus        79 g~~~~~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           79 ATAQIAVKEYASALETLDAARTK  101 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHh
Confidence            55566666666666666555443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.58  E-value=1.8e-06  Score=65.91  Aligned_cols=95  Identities=20%  Similarity=0.040  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010994          167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHF  246 (496)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  246 (496)
                      ..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.+++.. .... .+...+..+..+
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~-~~~~-~~~~~~~~la~~   93 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECI-QLEP-TFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHH-HhCC-CchHHHHHHHHH
Confidence            334444444444444444444444444331 1133334444444444444444444444443 2211 233344444444


Q ss_pred             HHhcCChHHHHHHHHHHH
Q 010994          247 YIKANLIDKASDVLKKAE  264 (496)
Q Consensus       247 ~~~~~~~~~a~~~~~~m~  264 (496)
                      +...|++++|...|++..
T Consensus        94 ~~~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            444444444444444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.57  E-value=1.2e-06  Score=66.64  Aligned_cols=117  Identities=8%  Similarity=-0.087  Sum_probs=57.6

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994          273 IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY  352 (496)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (496)
                      ..+..+...+...|++++|...++......+ .+...+..+...+...|++++|...++...+.. +.+...+..+...+
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence            3444444455555555555555554444332 233444445555555555555555555555432 11334445555555


Q ss_pred             HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994          353 CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK  392 (496)
Q Consensus       353 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~  392 (496)
                      ...|++++|...|++..+..+. +...+..+...+...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            5555555555555555554332 44445555555544443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.55  E-value=2.1e-06  Score=63.15  Aligned_cols=103  Identities=10%  Similarity=0.106  Sum_probs=78.7

Q ss_pred             CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC--CHH
Q 010994          341 DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP--DPK  418 (496)
Q Consensus       341 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p--~~~  418 (496)
                      +...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|+..++++++      ..+.  +..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~   77 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVIN------VIEDEYNKD   77 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------TSCCTTCHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH------hCcccchHH
Confidence            4556677777788888888888888888776544 667788888888888888888888888887      2222  467


Q ss_pred             HHHHHHHHHhcc-CCHHHHHHHHHHHHhcCCCC
Q 010994          419 VITSILSKLGDE-GSVQDVEAFVAALRTVIPMN  450 (496)
Q Consensus       419 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~  450 (496)
                      .+..+..++... |++++|.+.++......|.+
T Consensus        78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           78 VWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            778888888888 88888888888877765543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.53  E-value=2.1e-06  Score=77.55  Aligned_cols=93  Identities=12%  Similarity=-0.020  Sum_probs=68.1

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 010994          377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHA  456 (496)
Q Consensus       377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  456 (496)
                      ...|..+..+|.+.|++++|+..++++++      -.+.+...+..+..++...|++++|...|++.....|.+...+..
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  269 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALE------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQ  269 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            45777788888888888888888888876      123356677777788888888888888888777777777788888


Q ss_pred             HHHHHHhCC--CcH-HHHHHHH
Q 010994          457 FIKANIRNG--KGV-DELLDSM  475 (496)
Q Consensus       457 l~~~~~~~g--~~a-~~~~~~m  475 (496)
                      +..++.+.|  ++| ...++.|
T Consensus       270 l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          270 LAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            888887777  344 3444444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.50  E-value=4.9e-05  Score=67.27  Aligned_cols=219  Identities=11%  Similarity=0.006  Sum_probs=152.6

Q ss_pred             HHHHHHHHHHHhcccCccchHHHHHHHHHhcCC----------HHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC--C
Q 010994          255 KASDVLKKAEERLEQKDGIGYNFLISLYASLGN----------KSEVLRLWDLEKTACKRYINRDYITMLEALMKLG--E  322 (496)
Q Consensus       255 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~  322 (496)
                      +|+.+++.+....+ .+..+|+.--..+...+.          +++++.+++.+....+ -+..+|+.-...+.+.+  .
T Consensus        48 eaL~~t~~~L~~nP-~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P-Kny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           48 SVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP-KSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             HHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHCc-hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHhccCccc
Confidence            56666666655432 233334443333322222          5788888988887766 66677877777777777  4


Q ss_pred             HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc-hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-----------
Q 010994          323 HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL-VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA-----------  390 (496)
Q Consensus       323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------  390 (496)
                      ++++..+++.+.+.... |...|+.-...+...|. +++++..++++++.++. |...|+.....+...           
T Consensus       126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~  203 (331)
T 3dss_A          126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR  203 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence            89999999999987533 77777777777778888 59999999999998877 888998887777665           


Q ss_pred             ---CChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994          391 ---GKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDE-----------GSVQDVEAFVAALRTVIPMNRQMYH  455 (496)
Q Consensus       391 ---~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~  455 (496)
                         +.++++++++.+++.       ..| |...|+.+-..+.+.           +.++++.+.++++.+..|.+.-++.
T Consensus       204 ~~~~~~~eEle~~~~ai~-------~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~  276 (331)
T 3dss_A          204 LPENVLLKELELVQNAFF-------TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL  276 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence               457899999999997       445 566776555555544           4578899999988887777654444


Q ss_pred             HHHHHHH---hCC--CcHHHHHHHHHhCCCCCChhH
Q 010994          456 AFIKANI---RNG--KGVDELLDSMKADGIDEDEET  486 (496)
Q Consensus       456 ~l~~~~~---~~g--~~a~~~~~~m~~~g~~p~~~t  486 (496)
                      .++....   ..|  +++...+.++.+  +.|...-
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~  310 (331)
T 3dss_A          277 TIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAA  310 (331)
T ss_dssp             HHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHH
T ss_pred             HHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhh
Confidence            4432221   233  577888888887  5565543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.50  E-value=2.3e-06  Score=77.37  Aligned_cols=147  Identities=10%  Similarity=-0.042  Sum_probs=81.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994          236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLE  315 (496)
Q Consensus       236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  315 (496)
                      +...+..+...|.+.|++++|...|++.....+.....             ..+.+..+-.        .....|..+..
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~-------------~~~~~~~~~~--------~~~~~~~nla~  204 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSF-------------SNEEAQKAQA--------LRLASHLNLAM  204 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCC-------------CSHHHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccC-------------ChHHHHHHHH--------HHHHHHHHHHH
Confidence            34556666666777777777777777665543321100             0000000000        01245555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH
Q 010994          316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER  395 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  395 (496)
                      ++.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|+.++
T Consensus       205 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~  282 (336)
T 1p5q_A          205 CHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLA  282 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666666553 224555666666666667777777777666665443 55566666666666666666


Q ss_pred             H-HHHHHHHHH
Q 010994          396 G-FQCMKAALS  405 (496)
Q Consensus       396 a-~~~~~~~~~  405 (496)
                      | ...|++|..
T Consensus       283 a~~~~~~~~~~  293 (336)
T 1p5q_A          283 REKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            6 345555543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.49  E-value=1.8e-06  Score=67.00  Aligned_cols=95  Identities=14%  Similarity=0.042  Sum_probs=52.8

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSIL  424 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~  424 (496)
                      +..+...+.+.|++++|...|++....++. +...|..+..+|...|++++|+..|++++.      -.+.+...+..+.
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~lg   93 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGAL------MDINEPRFPFHAA   93 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCTHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh------cCCCCcHHHHHHH
Confidence            334445555566666666666666555433 555555666666666666666666666655      1122334555555


Q ss_pred             HHHhccCCHHHHHHHHHHHHhc
Q 010994          425 SKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       425 ~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                      .++...|++++|...|+.....
T Consensus        94 ~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           94 ECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh
Confidence            5566666666666666655443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.48  E-value=2.2e-05  Score=73.77  Aligned_cols=166  Identities=7%  Similarity=0.027  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhccc-Ccc----chHHHHHHHHHhcCCHHHHHHHHHHHHhhcC----CC-Cchh
Q 010994          240 YASAAHFYIKANLIDKASDVLKKAEERLEQ-KDG----IGYNFLISLYASLGNKSEVLRLWDLEKTACK----RY-INRD  309 (496)
Q Consensus       240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~  309 (496)
                      +..+...|...|++++|.+.+..+...... ++.    .+.+.+...+...|+.+.+..+++.......    .+ -..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            455667777777777777777765443211 111    1223333344456677777777765443221    11 1245


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCchhHHHHHHHHHHhc--CC-CC-C--Hh
Q 010994          310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYD-----TRIPNAVIIGYCNNGLVQNAEAILEDLVEK--GK-AT-T--PN  378 (496)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~-~p-~--~~  378 (496)
                      +..+...+...|++++|..+++.+...-...+     ..++..++..|...|++++|..++++....  .. .| .  ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            56677777777888888777777654311111     235667777777888888888887776532  11 11 1  23


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          379 SWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+..+...+...|++++|...|.++..
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            456666677777888888888877766

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.48  E-value=1.9e-06  Score=65.29  Aligned_cols=95  Identities=13%  Similarity=0.090  Sum_probs=47.8

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHHH
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVIT  421 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~  421 (496)
                      ..+...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|++.++++++..   ....++    ..++.
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVG---RETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC---cccchhhHHHHHHHH
Confidence            34455555555555555555555554433 45555555555555666666655555555411   001111    12344


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHH
Q 010994          422 SILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       422 ~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      .+..++...|++++|.+.|++..
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal  110 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSL  110 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            44455555555555555555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.46  E-value=2.7e-06  Score=64.45  Aligned_cols=107  Identities=14%  Similarity=0.110  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC--CC----HhHHHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA--TT----PNSWAV  382 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~----~~~~~~  382 (496)
                      .+..+...+.+.|++++|...|++..+..+ .+...|..+..+|.+.|++++|+..+++.++.++.  ++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            344556666666666666666666666532 24555666666777777777777777766543211  11    235777


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994          383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI  423 (496)
Q Consensus       383 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l  423 (496)
                      +...+...|++++|++.|++++.       ..||..+...+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~-------~~~~~~~~~~l  122 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS-------EFRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH-------HSCCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh-------hCcCHHHHHHH
Confidence            78888899999999999999887       45776655443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.46  E-value=4.8e-06  Score=62.96  Aligned_cols=96  Identities=13%  Similarity=0.010  Sum_probs=69.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994          308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY  387 (496)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  387 (496)
                      ..+......+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.++. +...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence            345556666777777777777777777653 225566777777777888888888888887776544 567777788888


Q ss_pred             HhcCChHHHHHHHHHHHH
Q 010994          388 FDAGKTERGFQCMKAALS  405 (496)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~  405 (496)
                      ...|++++|...|+++++
T Consensus        83 ~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           83 IAVKEYASALETLDAART  100 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHH
Confidence            888888888888888776

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.46  E-value=2.7e-06  Score=67.86  Aligned_cols=94  Identities=13%  Similarity=-0.005  Sum_probs=45.9

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSI  423 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l  423 (496)
                      +..+...+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..|+++++       +.| +...+..+
T Consensus        14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l   85 (164)
T 3sz7_A           14 LKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATV-------VDPKYSKAWSRL   85 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCCHHHHHHH
Confidence            344444444555555555555555444322 444455555555555555555555555554       122 23444455


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhc
Q 010994          424 LSKLGDEGSVQDVEAFVAALRTV  446 (496)
Q Consensus       424 ~~~~~~~g~~~~a~~~~~~~~~~  446 (496)
                      ..++...|++++|...|++....
T Consensus        86 g~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           86 GLARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHh
Confidence            55555555555555555544443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=6.2e-06  Score=64.24  Aligned_cols=111  Identities=13%  Similarity=-0.028  Sum_probs=69.0

Q ss_pred             cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 010994          342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP  417 (496)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~  417 (496)
                      ...+..+...+...|++++|...|++..+..  |+    ...|..+...|...|++++|+..+++++.      -.+.+.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~------~~~~~~   99 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE------KDGGDV   99 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HTSCCH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh------hCccCH
Confidence            3345555666666666666666666666543  33    45666666677777777777777777665      122245


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          418 KVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                      ..+..+..++...|++++|...|++.....|.+...+..+...
T Consensus       100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            5666666667777777777777776666555566555554443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.44  E-value=4.2e-06  Score=69.15  Aligned_cols=96  Identities=11%  Similarity=0.034  Sum_probs=71.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994          378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF  457 (496)
Q Consensus       378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  457 (496)
                      ..|..+..+|...|++++|+..+++++.      -.+.+...+..+..++...|++++|...|+......|.+...+..+
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l  162 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLK------IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  162 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH
Confidence            6788888999999999999999999987      2334667888889999999999999999998888888888999999


Q ss_pred             HHHHHhCC--CcHH-HHHHHHHhCC
Q 010994          458 IKANIRNG--KGVD-ELLDSMKADG  479 (496)
Q Consensus       458 ~~~~~~~g--~~a~-~~~~~m~~~g  479 (496)
                      ..++...+  +++. ..+..|...|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          163 ELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccc
Confidence            88888877  3333 5566665544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.42  E-value=4.9e-06  Score=63.91  Aligned_cols=95  Identities=11%  Similarity=-0.074  Sum_probs=45.0

Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITS  422 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~  422 (496)
                      ..+..+...+...|++++|...|++..+..+. +...|..+...+...|++++|+..+++++.      -.+.+...+..
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~   82 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALE------LDGQSVKAHFF   82 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH------hCchhHHHHHH
Confidence            33444444445555555555555554444322 344455555555555555555555555544      11123344444


Q ss_pred             HHHHHhccCCHHHHHHHHHHHH
Q 010994          423 ILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       423 l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      +..++...|++++|...|+...
T Consensus        83 l~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           83 LGQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH
Confidence            4455555555555555555443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.42  E-value=5.2e-07  Score=74.72  Aligned_cols=87  Identities=11%  Similarity=0.027  Sum_probs=64.6

Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVIT  421 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~  421 (496)
                      ..+..+..+|...|++++|...+++..+.... +...+..+..+|...|++++|+..|+++++       +.| +...+.
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~  160 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS-------LNPNNLDIRN  160 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------HCCCcHHHHH
Confidence            56677777888888888888888888876543 677888888888888888888888888887       334 455666


Q ss_pred             HHHHHHhccCCHHHHH
Q 010994          422 SILSKLGDEGSVQDVE  437 (496)
Q Consensus       422 ~l~~~~~~~g~~~~a~  437 (496)
                      .+..++...++.+++.
T Consensus       161 ~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          161 SYELCVNKLKEARKKD  176 (198)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6666666666666655

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.41  E-value=3.8e-06  Score=65.12  Aligned_cols=97  Identities=15%  Similarity=0.012  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994          238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL  317 (496)
Q Consensus       238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  317 (496)
                      ..+..+...+.+.|++++|...|++.....+ .+...|..+..++...|++++|+..|+......+ .+...+..+..++
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence            3344455555666666666666666555432 3445555566666666666666666665555544 3445555566666


Q ss_pred             HhcCCHHHHHHHHHHHHhc
Q 010994          318 MKLGEHEEAEKVLKEWELS  336 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~  336 (496)
                      ...|++++|...|+...+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666655544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.40  E-value=6.2e-06  Score=61.16  Aligned_cols=105  Identities=10%  Similarity=0.023  Sum_probs=89.6

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994          376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYH  455 (496)
Q Consensus       376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  455 (496)
                      +...+..+...+...|++++|...+++++.      ..+.+...+..+...+...|++++|...++......|.+...+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~   76 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIK------LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYS   76 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHH------HCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHH
Confidence            456788889999999999999999999987      23346788888999999999999999999998888888899999


Q ss_pred             HHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHH
Q 010994          456 AFIKANIRNG--KGVDELLDSMKADGIDEDEETKE  488 (496)
Q Consensus       456 ~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~  488 (496)
                      .+..+|...|  ++|.+.+++..+.  .|+.....
T Consensus        77 ~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~  109 (118)
T 1elw_A           77 RKAAALEFLNRFEEAKRTYEEGLKH--EANNPQLK  109 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHc--CCCCHHHH
Confidence            9999999999  7999999998874  46554433

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.35  E-value=7.1e-06  Score=60.19  Aligned_cols=94  Identities=5%  Similarity=-0.068  Sum_probs=47.2

Q ss_pred             hhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhHHHHHHHHHH
Q 010994          101 HAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIAL--STLTYNDIMCLYS  177 (496)
Q Consensus       101 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~  177 (496)
                      +..+...+...|++++|...|+++....| +...|..+...+...|++++|...|++..+.. +.  +...|..+..++.
T Consensus         9 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            9 YYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHHHH
Confidence            33334444444555555555544444433 34455555555555555555555555555442 11  3444555555555


Q ss_pred             hc-CCCCcHHHHHHHHHHC
Q 010994          178 KT-GQYEKVPDVLTEMKAK  195 (496)
Q Consensus       178 ~~-~~~~~a~~~~~~m~~~  195 (496)
                      .. |++++|.+.+++....
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           88 YIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             TCSSCSHHHHHHHHHHGGG
T ss_pred             HHhCCHHHHHHHHHHHhhc
Confidence            55 5555555555555443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=3.1e-05  Score=72.76  Aligned_cols=167  Identities=10%  Similarity=-0.001  Sum_probs=95.1

Q ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHCC-CCCCh----hhHHHHHHHHhhcCChHHHHHHHHHhh----cCCCCCCCHHH
Q 010994          169 YNDIMCLYSKTGQYEKVPDVLTEMKAKN-IFPDN----FSYRICINSYGARSDLEGMEIILREME----SQPHIVLDWST  239 (496)
Q Consensus       169 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~  239 (496)
                      +..+...|...|++++|.+.+..+...- ..++.    .+.+.+-..+...|+.+.|..+++...    ...+...-..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            4455555566666666665555544321 01111    112223334445566777776665544    11122123455


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhcccC-----ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC-CCC-----ch
Q 010994          240 YASAAHFYIKANLIDKASDVLKKAEERLEQK-----DGIGYNFLISLYASLGNKSEVLRLWDLEKTACK-RYI-----NR  308 (496)
Q Consensus       240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~-----~~  308 (496)
                      +..+...|...|++++|..++++....-...     ...++..++..|...|++++|..+++....... .++     ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            6677788888888888888887765432211     124577777888888888888888876554322 111     13


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (496)
                      .+..+...+...|++++|...+.+..+
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            355566666777888888877766654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.35  E-value=6.1e-06  Score=61.85  Aligned_cols=93  Identities=14%  Similarity=0.126  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSI  423 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l  423 (496)
                      +..+...+.+.|++++|...|++..+..+. +...|..+..++...|++++|+..|+++++       +.| +...+..+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~~~~~l   91 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM-------LDPKDIAVHAAL   91 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHH
Confidence            344455556666666666666666655433 555666666666666666666666666665       333 34455556


Q ss_pred             HHHHhccCCHHHHHHHHHHHHh
Q 010994          424 LSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       424 ~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      ..++...|++++|...+++..+
T Consensus        92 a~~~~~~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           92 AVSHTNEHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666666665554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.34  E-value=1e-05  Score=61.26  Aligned_cols=109  Identities=14%  Similarity=0.040  Sum_probs=55.8

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVI  420 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~  420 (496)
                      +..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++++...   ....++    ...+
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~   82 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVG---RENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---HHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc---cccchhHHHHHHHH
Confidence            344455555555566666555555554322 44555555556666666666666666655511   001111    4455


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 010994          421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFI  458 (496)
Q Consensus       421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~  458 (496)
                      ..+..++...|++++|...++...+.. |+...+..+.
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~  119 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQ  119 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhC-CCHHHHHHHH
Confidence            555555666666666666666555432 2444444443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.33  E-value=2.4e-05  Score=59.19  Aligned_cols=97  Identities=13%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             HHHHHHhcCchhHHHHHHHHHHhcCCCCCH---hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHH
Q 010994          348 VIIGYCNNGLVQNAEAILEDLVEKGKATTP---NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVI  420 (496)
Q Consensus       348 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~  420 (496)
                      +...+...|++++|...|+++.+..+. +.   ..+..+...+...|++++|+..|++++.       ..|+    ...+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~-------~~p~~~~~~~~~   79 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVS-------RYPTHDKAAGGL   79 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTSTTHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------HCCCCcccHHHH
Confidence            344445555555555555555544322 12   2444555555555555555555555554       1122    3344


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHH
Q 010994          421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQ  452 (496)
Q Consensus       421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  452 (496)
                      ..+..++...|++++|...|+.+....|.+..
T Consensus        80 ~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~  111 (129)
T 2xev_A           80 LKLGLSQYGEGKNTEAQQTLQQVATQYPGSDA  111 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCChH
Confidence            45555555555566665555555554444433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=1.5e-05  Score=61.96  Aligned_cols=107  Identities=7%  Similarity=-0.051  Sum_probs=91.6

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC----HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994          376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD----PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR  451 (496)
Q Consensus       376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  451 (496)
                      +...+..+...+...|++++|+..|+++++       ..|+    ...+..+...+...|++++|...++......|.+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG-------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT-------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH
Confidence            567888999999999999999999999986       5676    57788888899999999999999999888888889


Q ss_pred             HHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHH
Q 010994          452 QMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILV  491 (496)
Q Consensus       452 ~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~  491 (496)
                      ..|..+..+|...|  ++|...|++..+  +.|+.......+
T Consensus       100 ~~~~~~a~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l  139 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQAVLDLQRCVS--LEPKNKVFQEAL  139 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHH
Confidence            99999999999999  799999999887  456654443333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.29  E-value=5.3e-06  Score=65.66  Aligned_cols=101  Identities=11%  Similarity=0.020  Sum_probs=51.7

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DP  417 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~  417 (496)
                      ++..+...+...|++++|...+++..+.... ++    ...+..+...+...|++++|.+.+++++..... .+..+ ..
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~  129 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE-LKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-ccchHhHH
Confidence            3344444555555555555555554331100 01    234555666666677777777776666652211 11111 12


Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          418 KVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      ..+..+...+...|++++|.+.+++..+
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3455566666667777777776665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.29  E-value=6.4e-06  Score=61.75  Aligned_cols=94  Identities=12%  Similarity=-0.026  Sum_probs=57.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994          310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD  389 (496)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  389 (496)
                      +..+...+.+.|++++|...++...+... .+...|..+..++...|++++|+..|++..+.++. +...+..+...+..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            44455556666666666666666665532 24555556666666666666666666666665443 55566666666666


Q ss_pred             cCChHHHHHHHHHHHH
Q 010994          390 AGKTERGFQCMKAALS  405 (496)
Q Consensus       390 ~~~~~~a~~~~~~~~~  405 (496)
                      .|++++|+..++++++
T Consensus        98 ~g~~~~A~~~~~~al~  113 (121)
T 1hxi_A           98 EHNANAALASLRAWLL  113 (121)
T ss_dssp             HHHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666666654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.28  E-value=9.6e-06  Score=61.44  Aligned_cols=59  Identities=15%  Similarity=0.014  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994          240 YASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEK  299 (496)
Q Consensus       240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  299 (496)
                      +..+...+...|++++|...|++.....+ .+...+..+...+...|++++|...++...
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~   65 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            33344444444444444444444443321 233334444444444444444444444333

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.27  E-value=2.4e-05  Score=59.96  Aligned_cols=97  Identities=9%  Similarity=-0.041  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHH
Q 010994          237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEA  316 (496)
Q Consensus       237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  316 (496)
                      ...+..+...+...|++++|...|++.....+ .+...|..+..++...|++++|...++......+ .+...+..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHH
Confidence            44444444555555555555555555444322 2334444455555555555555555554444333 233444444445


Q ss_pred             HHhcCCHHHHHHHHHHHHh
Q 010994          317 LMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~  335 (496)
                      +...|++++|...+....+
T Consensus        87 ~~~~~~~~~A~~~~~~a~~  105 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYS  105 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            5555555555555544443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.25  E-value=2.4e-05  Score=62.25  Aligned_cols=97  Identities=11%  Similarity=0.061  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHH
Q 010994          238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEAL  317 (496)
Q Consensus       238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  317 (496)
                      ..+..+...+...|++++|+..|++..+..+ .+...|..+..+|...|++++|+..|+......+ .+...|..+..++
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~   89 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            3444455555555555555555555544332 2344455555555555555555555555544433 3344455555555


Q ss_pred             HhcCCHHHHHHHHHHHHhc
Q 010994          318 MKLGEHEEAEKVLKEWELS  336 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~  336 (496)
                      ...|++++|...|++..+.
T Consensus        90 ~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHh
Confidence            5555555555555555543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.23  E-value=6.5e-06  Score=65.45  Aligned_cols=69  Identities=12%  Similarity=0.062  Sum_probs=46.2

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCH
Q 010994          377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNR  451 (496)
Q Consensus       377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  451 (496)
                      ...|..+..+|.+.|++++|+..+++++.      --+.+...+..+..++...|++++|...|+......|.+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~------~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~  131 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLK------REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA  131 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence            34666677777777777777777777776      1223455666777777777777777777776666555555

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.22  E-value=4.5e-05  Score=57.65  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=57.9

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCC---HhHHHHHHH
Q 010994          312 TMLEALMKLGEHEEAEKVLKEWELSGNSYDT---RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATT---PNSWAVVAA  385 (496)
Q Consensus       312 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~  385 (496)
                      .+...+...|++++|...++.+.+.... +.   ..+..+..++.+.|++++|...|+++.+..+. +   ...+..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence            3455566666677777666666654321 22   25555666666777777777777776665433 2   455666677


Q ss_pred             HHHhcCChHHHHHHHHHHHH
Q 010994          386 GYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       386 ~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ++...|++++|...|++++.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            77777777777777777765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.21  E-value=1.9e-05  Score=62.38  Aligned_cols=62  Identities=11%  Similarity=0.026  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc-----cchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEERLEQKD-----GIGYNFLISLYASLGNKSEVLRLWDLEKT  300 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  300 (496)
                      ++..+...|...|++++|...+++..+......     ..++..+...+...|++++|...++....
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~   77 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLL   77 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445555666666666666666666544321111     13455555566666666666666654443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.20  E-value=1.1e-05  Score=76.68  Aligned_cols=119  Identities=13%  Similarity=0.015  Sum_probs=61.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChH
Q 010994          315 EALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTE  394 (496)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  394 (496)
                      ..+.+.|++++|...+++..+.. +.+...+..+..+|.+.|++++|...+++..+..+. +...|..+..+|...|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence            34455566666666666665542 123455555666666666666666666666655433 4555666666666666666


Q ss_pred             HHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHH--HhccCCHHHHHHHHHH
Q 010994          395 RGFQCMKAALSVYVEGKGWKPD-PKVITSILSK--LGDEGSVQDVEAFVAA  442 (496)
Q Consensus       395 ~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~a~~~~~~  442 (496)
                      +|++.|+++++       ..|+ ...+..+..+  +.+.|++++|.+.+++
T Consensus        92 eA~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           92 AALRDYETVVK-------VKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHH-------HSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            66666666655       1221 2223333323  4555555556555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.16  E-value=1.8e-05  Score=74.75  Aligned_cols=83  Identities=11%  Similarity=0.045  Sum_probs=56.8

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHH
Q 010994          377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHA  456 (496)
Q Consensus       377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  456 (496)
                      ...|..+..+|.+.|++++|+..++++++      -.+.+...+..+..+|...|++++|...|++..+..|.+...+..
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~------~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~  390 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALG------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ  390 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            35677777777777777777777777776      122345677777777777777777777777777766666777777


Q ss_pred             HHHHHHhCC
Q 010994          457 FIKANIRNG  465 (496)
Q Consensus       457 l~~~~~~~g  465 (496)
                      +..++.+.+
T Consensus       391 l~~~~~~~~  399 (457)
T 1kt0_A          391 ISMCQKKAK  399 (457)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777777766

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.13  E-value=0.00016  Score=69.95  Aligned_cols=170  Identities=9%  Similarity=-0.097  Sum_probs=123.7

Q ss_pred             CHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC
Q 010994          287 NKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE----------HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG  356 (496)
Q Consensus       287 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  356 (496)
                      ..++|++.++.+....+ .+...|+.--.++...|+          ++++...++.+.+...+ +..+|+.-...+.+.|
T Consensus        44 ~~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            33556666666666554 344555555555555555          78888888888876533 6667777777777778


Q ss_pred             --chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhcc---
Q 010994          357 --LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDE---  430 (496)
Q Consensus       357 --~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---  430 (496)
                        ++++++..++++.+.++. |...|+.-...+.+.| .++++++.+.++++      ...-|...|+.....+.+.   
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~------~~p~n~saW~~r~~ll~~l~~~  194 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLIT------RNFSNYSSWHYRSCLLPQLHPQ  194 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT------TTCCCHHHHHHHHHHHHHHSCC
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHH------HCCCCccHHHHHHHHHHhhccc
Confidence              668899999999888777 8888888888888888 78888888888876      3334566777666655542   


Q ss_pred             -----------CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          431 -----------GSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       431 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                                 +.++++.+.++......|.+...|+.+...+.+.+
T Consensus       195 ~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~  240 (567)
T 1dce_A          195 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE  240 (567)
T ss_dssp             CCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred             ccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence                       56788999888888778899999999888888776

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.11  E-value=2.6e-05  Score=73.96  Aligned_cols=119  Identities=17%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             HHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCH
Q 010994          209 NSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNK  288 (496)
Q Consensus       209 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~  288 (496)
                      ..+.+.|++++|.+.+++.. +... .+..+|..+..+|.+.|++++|...+++..+..+ .+..+|..+..+|...|++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al-~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAI-ELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHhCCHHHHHHHHHHHH-HhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence            34555666666666666655 3322 3455566666666666666666666666655432 3445555666666666666


Q ss_pred             HHHHHHHHHHHhhcCCCCchhHHHHHHH--HHhcCCHHHHHHHHH
Q 010994          289 SEVLRLWDLEKTACKRYINRDYITMLEA--LMKLGEHEEAEKVLK  331 (496)
Q Consensus       289 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~  331 (496)
                      ++|.+.|++.....+ .+...+..+..+  +.+.|++++|...++
T Consensus        91 ~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            666666665555443 223333333333  555556666665555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.10  E-value=0.00012  Score=70.93  Aligned_cols=170  Identities=8%  Similarity=0.013  Sum_probs=100.7

Q ss_pred             HHHHHHHhchhcCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcC--CC
Q 010994          116 SAESYFSNLKDDEK-TYQTYGALLNCYVRQRQ----------TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTG--QY  182 (496)
Q Consensus       116 ~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~--~~  182 (496)
                      +|+..++.+....| +..+|+.--.++.+.|+          ++++++.++.+.+...+ +..+|+.-..++.+.+  ++
T Consensus        47 eal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~  125 (567)
T 1dce_A           47 SVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNW  125 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCH
T ss_pred             HHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccH
Confidence            34444444444444 34455544444444444          66666666666655433 5566666666666666  44


Q ss_pred             CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcC-ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc-----------
Q 010994          183 EKVPDVLTEMKAKNIFPDNFSYRICINSYGARS-DLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA-----------  250 (496)
Q Consensus       183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------  250 (496)
                      +++++.++++.+.... |..+|+.-.-++.+.| .++++++.++++. +.++ -+..+|+.....+.+.           
T Consensus       126 ~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I-~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~  202 (567)
T 1dce_A          126 ARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLI-TRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGR  202 (567)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTT-TTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred             HHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHH-HHCC-CCccHHHHHHHHHHhhccccccccccc
Confidence            6666666666665322 4555555555555556 6677777777776 5554 5666666665555542           


Q ss_pred             ---CChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994          251 ---NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE  290 (496)
Q Consensus       251 ---~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~  290 (496)
                         +.++++.+.+++.....+ -|..+|.-....+.+.++.++
T Consensus       203 ~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          203 LPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             SCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence               456788888887776543 566778777777766666433

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.09  E-value=0.00012  Score=56.71  Aligned_cols=80  Identities=11%  Similarity=0.113  Sum_probs=59.1

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhc-------CCCCCHhHH----HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEK-------GKATTPNSW----AVVAAGYFDAGKTERGFQCMKAALSVYVEGKG  412 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  412 (496)
                      .|..+..++.+.|++++|+..+++.++.       ++. +...|    .....++...|++++|+..|+++++..-++.+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~  137 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  137 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence            6777777777888888888888777775       433 45677    88899999999999999999999885545566


Q ss_pred             CCCCHHHHHHHH
Q 010994          413 WKPDPKVITSIL  424 (496)
Q Consensus       413 ~~p~~~~~~~l~  424 (496)
                      +.+........+
T Consensus       138 ~~~~~~~~~~~~  149 (159)
T 2hr2_A          138 ETPGKERMMEVA  149 (159)
T ss_dssp             CCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666655444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.08  E-value=7.3e-05  Score=70.59  Aligned_cols=122  Identities=12%  Similarity=-0.005  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCc--------------cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcC
Q 010994          238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKD--------------GIGYNFLISLYASLGNKSEVLRLWDLEKTACK  303 (496)
Q Consensus       238 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  303 (496)
                      ..+..+...|.+.|++++|...|++..+..+...              ...|..+..+|.+.|++++|+..++......+
T Consensus       269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  348 (457)
T 1kt0_A          269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS  348 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            3455566666666777777776666655432111              23444444555555555555555554444433


Q ss_pred             CCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994          304 RYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA  361 (496)
Q Consensus       304 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  361 (496)
                       .+...|..+..+|...|++++|...|+++.+... .+...+..+...+.+.++.+++
T Consensus       349 -~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a  404 (457)
T 1kt0_A          349 -ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNER  404 (457)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred             -ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence             3334444444445555555555555554444321 1233444444444444444433

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.08  E-value=1.3e-05  Score=59.57  Aligned_cols=90  Identities=9%  Similarity=0.091  Sum_probs=47.7

Q ss_pred             cCchhHHHHHHHHHHhcCC--CCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCC
Q 010994          355 NGLVQNAEAILEDLVEKGK--ATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGS  432 (496)
Q Consensus       355 ~g~~~~a~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  432 (496)
                      .|++++|+..|++..+.+.  +-+...+..+...|...|++++|+..|+++++      -.+-+...+..+..++...|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~l~~~~~~~g~   76 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVK------QFPNHQALRVFYAMVLYNLGR   76 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHcCC
Confidence            4556666666666655421  11334555666666666666666666666665      112234555556666666666


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 010994          433 VQDVEAFVAALRTVIPMN  450 (496)
Q Consensus       433 ~~~a~~~~~~~~~~~~~~  450 (496)
                      +++|...+++.....|.+
T Consensus        77 ~~~A~~~~~~al~~~p~~   94 (117)
T 3k9i_A           77 YEQGVELLLKIIAETSDD   94 (117)
T ss_dssp             HHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhCCCc
Confidence            666666666555543433

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.08  E-value=2.3e-05  Score=62.22  Aligned_cols=113  Identities=10%  Similarity=0.014  Sum_probs=88.6

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhc--CCCC---------CC-CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994          377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVE--GKGW---------KP-DPKVITSILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~---------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      ...+......+.+.|++++|+..|.+++.....  ....         .| +...+..+..++.+.|++++|...++...
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            346777888899999999999999999872100  0000         22 23578888889999999999999999998


Q ss_pred             hcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChh-HHHHHH
Q 010994          445 TVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEE-TKEILV  491 (496)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~-t~~~l~  491 (496)
                      ...|.++..|..+..+|...|  ++|...|++..+  +.|+.. .....+
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~l  138 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAASVVAREM  138 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCHHHHHHHH
Confidence            888999999999999999999  899999999888  468766 544333

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.08  E-value=5e-06  Score=61.94  Aligned_cols=85  Identities=18%  Similarity=0.141  Sum_probs=59.9

Q ss_pred             cCCHHHHHHHHHHHHhcC--CCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994          320 LGEHEEAEKVLKEWELSG--NSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       320 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      .|++++|...|++..+.+  .+.+...+..+...|...|++++|...|++..+..+. +...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            567777777777777653  1224456677777788888888888888888776554 5677777888888888888888


Q ss_pred             HHHHHHHH
Q 010994          398 QCMKAALS  405 (496)
Q Consensus       398 ~~~~~~~~  405 (496)
                      ..+++++.
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888776

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.07  E-value=1.7e-05  Score=72.41  Aligned_cols=82  Identities=10%  Similarity=0.076  Sum_probs=52.5

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994          377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYH  455 (496)
Q Consensus       377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  455 (496)
                      ...|..+..+|.+.|++++|+..++++++       ..| +...+..+..++...|++++|...|++..+..|.+...+.
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~  345 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALE-------IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQA  345 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44566666666777777777777777665       233 4556666666666777777777777766666666666666


Q ss_pred             HHHHHHHhCC
Q 010994          456 AFIKANIRNG  465 (496)
Q Consensus       456 ~l~~~~~~~g  465 (496)
                      .+..++...+
T Consensus       346 ~l~~~~~~~~  355 (370)
T 1ihg_A          346 ELLKVKQKIK  355 (370)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            6666655544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.02  E-value=1.7e-05  Score=71.58  Aligned_cols=145  Identities=11%  Similarity=0.029  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010994          308 RDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGY  387 (496)
Q Consensus       308 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  387 (496)
                      ..+..+...+.+.|++++|...|.+..+..  |+..       .+...|+.+++...+.          ...|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            346666777777788888888888776652  2221       1223344444332221          13788899999


Q ss_pred             HhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--
Q 010994          388 FDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--  465 (496)
Q Consensus       388 ~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--  465 (496)
                      .+.|++++|+..++++++      ..+.+...+..+..++...|++++|...|++.....|.+...+..+........  
T Consensus       241 ~~~g~~~~A~~~~~~al~------~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~  314 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLT------EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKAL  314 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------
T ss_pred             HHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999998      223467889999999999999999999999988877777778877776644443  


Q ss_pred             -CcHHHHHHHHHh
Q 010994          466 -KGVDELLDSMKA  477 (496)
Q Consensus       466 -~~a~~~~~~m~~  477 (496)
                       +.+..+|++|..
T Consensus       315 ~~~a~~~~~~~l~  327 (338)
T 2if4_A          315 YQKQKEMYKGIFK  327 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHHhhC
Confidence             677888888875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.97  E-value=9.4e-05  Score=67.53  Aligned_cols=27  Identities=11%  Similarity=0.091  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEE  265 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~  265 (496)
                      .+..+...+.+.|++++|+..|++..+
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~  251 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLR  251 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            355566677777777777777777654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.91  E-value=7.8e-06  Score=60.03  Aligned_cols=61  Identities=15%  Similarity=0.194  Sum_probs=33.1

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+..+...+...|++++|...|++..+..+. +...|..+..++...|++++|+..++++++
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   66 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR   66 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3444455555555555555555555554332 445555555555555555555555555554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.90  E-value=0.00015  Score=50.64  Aligned_cols=84  Identities=12%  Similarity=0.231  Sum_probs=69.7

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994          376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYH  455 (496)
Q Consensus       376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  455 (496)
                      +...+..+...+...|++++|+..+++++.      ..+.+...+..+..++...|++++|...+++.....|.+...+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~   81 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALE------LDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQ   81 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHH
Confidence            345778888889999999999999999987      22345678888888999999999999999988887888888888


Q ss_pred             HHHHHHHhCC
Q 010994          456 AFIKANIRNG  465 (496)
Q Consensus       456 ~l~~~~~~~g  465 (496)
                      .+..++.+.|
T Consensus        82 ~l~~~~~~~g   91 (91)
T 1na3_A           82 NLGNAKQKQG   91 (91)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHhcC
Confidence            8888877654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.89  E-value=0.00027  Score=54.70  Aligned_cols=95  Identities=22%  Similarity=0.055  Sum_probs=53.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhcccC------c-----cchHHHHHHHHHhcCCHHHHHHHHHHHHhh-------
Q 010994          240 YASAAHFYIKANLIDKASDVLKKAEERLEQK------D-----GIGYNFLISLYASLGNKSEVLRLWDLEKTA-------  301 (496)
Q Consensus       240 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------  301 (496)
                      +......+.+.|++++|+..|++..+..+..      +     ...|..+..++.+.|++++|+..++.....       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3344555666666666666666665543320      1     125666666666666666666666655554       


Q ss_pred             cCCCCchhH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          302 CKRYINRDY----ITMLEALMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       302 ~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~  335 (496)
                      .+ .+...|    .....++...|++++|...|++..+
T Consensus        94 ~p-d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           94 NQ-DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TS-THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CC-chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            32 233444    5555555556666666666555554

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.85  E-value=3.5e-05  Score=69.59  Aligned_cols=148  Identities=7%  Similarity=0.021  Sum_probs=86.8

Q ss_pred             cchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994          272 GIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIG  351 (496)
Q Consensus       272 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (496)
                      ...+..+...+.+.|++++|+..|+......+  +..       .+...|+.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p--~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG--DDF-------MFQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC--HHH-------HHTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc--cch-------hhhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            34578888899999999999999998777543  211       1223333444333221          2367788889


Q ss_pred             HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH-HHHHHHHH-Hhc
Q 010994          352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK-VITSILSK-LGD  429 (496)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~-~~~~l~~~-~~~  429 (496)
                      |.+.|++++|+..+++.++.... +...|..+..+|...|++++|...|+++++       +.|+.. .+..+... ...
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~-------l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQK-------YAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999887654 788899999999999999999999999875       556543 44444433 234


Q ss_pred             cCCHHHHHHHHHHHHhc
Q 010994          430 EGSVQDVEAFVAALRTV  446 (496)
Q Consensus       430 ~g~~~~a~~~~~~~~~~  446 (496)
                      .+..+.+...|+.+...
T Consensus       312 ~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          312 KALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             -----------------
T ss_pred             HHHHHHHHHHHHHhhCC
Confidence            45667777788776654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.83  E-value=0.00017  Score=53.12  Aligned_cols=77  Identities=12%  Similarity=0.040  Sum_probs=36.1

Q ss_pred             HHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010994          361 AEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFV  440 (496)
Q Consensus       361 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  440 (496)
                      |...|++..+..+. +...+..+...|...|++++|+..|++++.      -.+.+...+..+..++...|++++|...|
T Consensus         4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~------~~p~~~~~~~~la~~~~~~g~~~~A~~~~   76 (115)
T 2kat_A            4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALD------FDPTYSVAWKWLGKTLQGQGDRAGARQAW   76 (115)
T ss_dssp             HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH------HCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44444444443322 344455555555555555555555555544      11122344444455555555555555555


Q ss_pred             HHHH
Q 010994          441 AALR  444 (496)
Q Consensus       441 ~~~~  444 (496)
                      +...
T Consensus        77 ~~al   80 (115)
T 2kat_A           77 ESGL   80 (115)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.76  E-value=7.8e-05  Score=57.55  Aligned_cols=98  Identities=12%  Similarity=-0.006  Sum_probs=66.4

Q ss_pred             cCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc----------hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh
Q 010994          320 LGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL----------VQNAEAILEDLVEKGKATTPNSWAVVAAGYFD  389 (496)
Q Consensus       320 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  389 (496)
                      .+.+++|...++...+..+ .+...|..+..++...++          +++|+..|++.++.++. +...|..+..+|..
T Consensus        15 ~~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence            3445555555555555432 244455555555555544          56888888888887665 67788888888887


Q ss_pred             cC-----------ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHH
Q 010994          390 AG-----------KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSK  426 (496)
Q Consensus       390 ~~-----------~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~  426 (496)
                      .|           ++++|++.|+++++       +.|+...|...+..
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~-------l~P~~~~y~~al~~  133 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVD-------EQPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHH
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHH
Confidence            64           89999999999987       77877666555443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.73  E-value=0.00085  Score=51.28  Aligned_cols=87  Identities=6%  Similarity=-0.076  Sum_probs=44.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994          313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN----NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF  388 (496)
Q Consensus       313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  388 (496)
                      +...|...+.+++|.+.|++..+.|   +...+..+...|..    .+++++|..+|++..+.|   +...+..+...|.
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~  104 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHH
Confidence            3344444444455555555555443   33444444444544    455555555555555543   4445555555555


Q ss_pred             h----cCChHHHHHHHHHHHH
Q 010994          389 D----AGKTERGFQCMKAALS  405 (496)
Q Consensus       389 ~----~~~~~~a~~~~~~~~~  405 (496)
                      .    .++.++|.++|+++.+
T Consensus       105 ~G~g~~~d~~~A~~~~~~Aa~  125 (138)
T 1klx_A          105 AGKGVVKNEKQAVKTFEKACR  125 (138)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCCCcCHHHHHHHHHHHHH
Confidence            5    5555566666655554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.72  E-value=0.00012  Score=69.03  Aligned_cols=129  Identities=12%  Similarity=0.024  Sum_probs=58.3

Q ss_pred             HHhcCCHHHHHHHHHHHHhcC---CCC----CcccHHHHHHHHHhcCchhHHHHHHHHHHh-----cCCC-CCH-hHHHH
Q 010994          317 LMKLGEHEEAEKVLKEWELSG---NSY----DTRIPNAVIIGYCNNGLVQNAEAILEDLVE-----KGKA-TTP-NSWAV  382 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~~-~~~~~  382 (496)
                      +...|++++|..++++..+..   +.+    ...+++.|...|...|++++|..++++.++     .|.. |+. .+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            344555666655555544320   111    123445555555555555555555555432     1221 111 13555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhhhcCCCC-CCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGW-KPDP-KVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       383 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      |...|...|++++|..+++++++......|- .|+. .+...+..++...|.+++|+.++..+++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555533222221 1111 2233333444445555555555555543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.71  E-value=0.0003  Score=51.21  Aligned_cols=92  Identities=10%  Similarity=0.015  Sum_probs=75.2

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC-----
Q 010994          376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN-----  450 (496)
Q Consensus       376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----  450 (496)
                      +...+..+...+...|++++|+..|+++++      -.+.+...+..+..++...|++++|...+++.....|.+     
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~   76 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLIT------AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAI   76 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHH
Confidence            566788899999999999999999999998      233467888899999999999999999999998877666     


Q ss_pred             -HHHHHHHHHHHHhCC--CcHHHHHH
Q 010994          451 -RQMYHAFIKANIRNG--KGVDELLD  473 (496)
Q Consensus       451 -~~~~~~l~~~~~~~g--~~a~~~~~  473 (496)
                       ...+..+..++...|  +.|...++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           77 RSKLQYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence             677777777777776  55554443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.70  E-value=5.7e-05  Score=58.33  Aligned_cols=98  Identities=12%  Similarity=0.097  Sum_probs=60.5

Q ss_pred             HhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCChhHHHHHHHHHH
Q 010994          109 GRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQT----------DKALSHFRKMKEMGIALSTLTYNDIMCLYS  177 (496)
Q Consensus       109 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~  177 (496)
                      .+.+.+++|.+.++...+..| +...|+.+..++...+++          ++|+..|++..+.+.. +..+|..+..+|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~   91 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence            455566666666666666666 566666666666666554          4777777776665333 5566777777776


Q ss_pred             hcC-----------CCCcHHHHHHHHHHCCCCCChhhHHHHHH
Q 010994          178 KTG-----------QYEKVPDVLTEMKAKNIFPDNFSYRICIN  209 (496)
Q Consensus       178 ~~~-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~  209 (496)
                      ..|           ++++|...|++..+  +.|+...|...+.
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~  132 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            553           56666666666666  3555555544443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.67  E-value=0.00018  Score=67.93  Aligned_cols=125  Identities=12%  Similarity=-0.027  Sum_probs=81.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcC------CCC-chhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-cccHH
Q 010994          281 LYASLGNKSEVLRLWDLEKTACK------RYI-NRDYITMLEALMKLGEHEEAEKVLKEWELS-----GN-SYD-TRIPN  346 (496)
Q Consensus       281 ~~~~~~~~~~a~~~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~  346 (496)
                      .+...|++++|+.++++......      .|+ ..+++.+..+|...|++++|..++++..+.     |. .|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            35567888888888776554322      111 245777788888888888888888776632     21 122 34567


Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHh-----cCCC-CC-HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVE-----KGKA-TT-PNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .|...|...|++++|..++++..+     .|.. |+ ..+.+.+..++...+.+++|..+|+++.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            778888888888888888877653     2322 11 22455666677777778888888887765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.67  E-value=0.00092  Score=51.09  Aligned_cols=111  Identities=8%  Similarity=-0.077  Sum_probs=65.1

Q ss_pred             cChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHh----cCCHHHHH
Q 010994           76 KRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVR----QRQTDKAL  151 (496)
Q Consensus        76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~  151 (496)
                      +++++|++.|+...+.+    ++...  +...+...+.++.|..+|++..+. .++..+..|...|..    .+++++|.
T Consensus         9 ~d~~~A~~~~~~aa~~g----~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN----EMFGC--LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT----CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCC----CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            45667777777777665    12222  444444555566666666666553 345555566666665    56666666


Q ss_pred             HHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCC
Q 010994          152 SHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKN  196 (496)
Q Consensus       152 ~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~  196 (496)
                      +.|++..+.|   +...+..|...|..    .+++++|...|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666665553   45555556666655    556666666666665554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.62  E-value=0.00038  Score=51.26  Aligned_cols=78  Identities=9%  Similarity=-0.041  Sum_probs=32.9

Q ss_pred             cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      .|...|++..+.. +.+...+..+..++...|++++|+..|++.. ..+. .+...|..+..+|...|++++|...|++.
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al-~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAAL-DFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH-HHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444444331 1133344444444444444444444444443 2221 23334444444444444444444444444


Q ss_pred             H
Q 010994          264 E  264 (496)
Q Consensus       264 ~  264 (496)
                      .
T Consensus        80 l   80 (115)
T 2kat_A           80 L   80 (115)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.55  E-value=0.0011  Score=46.11  Aligned_cols=62  Identities=15%  Similarity=0.267  Sum_probs=40.7

Q ss_pred             ccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          343 RIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       343 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...++++++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34555566666667777777777766665433 556666677777777777777777777765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.41  E-value=0.001  Score=47.47  Aligned_cols=64  Identities=17%  Similarity=0.086  Sum_probs=37.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          236 DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKT  300 (496)
Q Consensus       236 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  300 (496)
                      +...+..+..+|...|++++|+..|++..+..+ .+...|..+..+|...|++++|...|+....
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344555566666666666666666666655433 3444566666666666666666666664443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.41  E-value=0.0019  Score=45.98  Aligned_cols=63  Identities=14%  Similarity=0.131  Sum_probs=37.1

Q ss_pred             cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ...+..+...|...|++++|...|++..+.++. +...|..+..+|...|++++|++.|+++++
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344555555666666666666666666655433 445566666666666666666666666554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.39  E-value=0.0053  Score=54.65  Aligned_cols=75  Identities=8%  Similarity=0.065  Sum_probs=52.3

Q ss_pred             CCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHH
Q 010994          339 SYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPK  418 (496)
Q Consensus       339 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~  418 (496)
                      +.+..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.|+++..       +.|...
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr-------L~P~~~  344 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN-------LRPGAN  344 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HSCSHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCCCcC
Confidence            3455566666655666678888888887777765  5666676777777777888888888877776       567766


Q ss_pred             HHHH
Q 010994          419 VITS  422 (496)
Q Consensus       419 ~~~~  422 (496)
                      +|..
T Consensus       345 t~~~  348 (372)
T 3ly7_A          345 TLYW  348 (372)
T ss_dssp             HHHH
T ss_pred             hHHH
Confidence            6543

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.24  E-value=0.0061  Score=54.23  Aligned_cols=63  Identities=14%  Similarity=0.117  Sum_probs=33.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 010994          130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA  194 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  194 (496)
                      +..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.|++...
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr  338 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN  338 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            45555555444444455555555555555543  4444444555555555555555555555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.98  E-value=0.0009  Score=47.52  Aligned_cols=56  Identities=18%  Similarity=0.344  Sum_probs=34.2

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhcCCCCCHh-HHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          349 IIGYCNNGLVQNAEAILEDLVEKGKATTPN-SWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ...+.+.|++++|...|++..+..+. +.. .+..+...|...|++++|+..|+++++
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34455566666666666666655433 445 566666666666666666666666665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.93  E-value=0.028  Score=57.33  Aligned_cols=26  Identities=8%  Similarity=-0.017  Sum_probs=12.1

Q ss_pred             hhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994          202 FSYRICINSYGARSDLEGMEIILREM  227 (496)
Q Consensus       202 ~~~~~li~~~~~~~~~~~a~~~~~~~  227 (496)
                      ..|..+...+.+.|+++.|++.|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            34444444444444444444444444

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.90  E-value=0.0025  Score=59.07  Aligned_cols=92  Identities=8%  Similarity=-0.117  Sum_probs=67.3

Q ss_pred             hcCchhHHHHHHHHHHhc---CCCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC-CCCCH-HHHHHHH
Q 010994          354 NNGLVQNAEAILEDLVEK---GKATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG-WKPDP-KVITSIL  424 (496)
Q Consensus       354 ~~g~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~-~~~~~l~  424 (496)
                      ..|++++|..++++..+.   -..|+    ..+++.+...|...|++++|+.+++++++.+..-.| ..|+. .+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            357888888888876642   11222    347888999999999999999999998874433333 23333 5788888


Q ss_pred             HHHhccCCHHHHHHHHHHHHh
Q 010994          425 SKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       425 ~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      ..|..+|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            899999999999998886654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.80  E-value=0.0087  Score=55.52  Aligned_cols=97  Identities=7%  Similarity=-0.055  Sum_probs=64.6

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhcC---CCCC----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC-CCCCH-HH
Q 010994          349 IIGYCNNGLVQNAEAILEDLVEKG---KATT----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG-WKPDP-KV  419 (496)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~~---~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~-~~  419 (496)
                      +..+.+.|++++|..++++..+..   ..|+    ..+++.+...|...|++++|+.++++++..+..-.| ..|+. .+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344556777888888877776431   1122    246778888888888888888888888774432222 22332 46


Q ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          420 ITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       420 ~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            77778888888888888888876544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.80  E-value=0.012  Score=41.40  Aligned_cols=65  Identities=12%  Similarity=0.111  Sum_probs=55.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHH-HHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994          383 VAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPK-VITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY  454 (496)
Q Consensus       383 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  454 (496)
                      ....+...|++++|+..|+++++       ..| +.. .+..+..++...|++++|...|+...+..|.+...+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQ-------TEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHH-------HCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHH-------HCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            45678889999999999999997       344 556 888889999999999999999999888777777666

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.63  E-value=0.012  Score=54.61  Aligned_cols=89  Identities=7%  Similarity=-0.013  Sum_probs=63.7

Q ss_pred             hHHHhhcCHHHHHHHHHhchhc-----CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-ChhHH
Q 010994          106 DLIGRVHGFLSAESYFSNLKDD-----EK----TYQTYGALLNCYVRQRQTDKALSHFRKMKEM-----G-IAL-STLTY  169 (496)
Q Consensus       106 ~~~~~~~~~~~A~~~~~~~~~~-----~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~~~  169 (496)
                      ..+.+.|++++|+..+++..+.     +|    ...+++.|..+|...|++++|+.++++...-     | -.| ...++
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3344566777777777766543     12    2567899999999999999999999876432     2 112 23457


Q ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHH
Q 010994          170 NDIMCLYSKTGQYEKVPDVLTEMKA  194 (496)
Q Consensus       170 ~~l~~~~~~~~~~~~a~~~~~~m~~  194 (496)
                      +.|...|...|++++|..++++..+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            8888888888998888888887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.54  E-value=0.021  Score=58.29  Aligned_cols=154  Identities=13%  Similarity=0.076  Sum_probs=87.3

Q ss_pred             HHHHhccChhHHHH-HHHHHHhCCCCCCC-cchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCH
Q 010994           70 RDLRKRKRFSQALE-VSDWMNRKGICVFA-PCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQT  147 (496)
Q Consensus        70 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  147 (496)
                      ......+++++|.+ ++..        +. ......++..+.+.|..+.|.++.+       +..   .-.......|++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~--------i~~~~~~~~~~~~l~~~~~~~~a~~~~~-------~~~---~~f~~~l~~~~~  668 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN--------VEGKDSLTKIARFLEGQEYYEEALNISP-------DQD---QKFELALKVGQL  668 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG--------CCCHHHHHHHHHHHHHTTCHHHHHHHCC-------CHH---HHHHHHHHHTCH
T ss_pred             hHHHHhCCHHHHHHHHHhc--------CCchHHHHHHHHHHHhCCChHHheecCC-------Ccc---hheehhhhcCCH
Confidence            34445677777766 4411        11 2233455566667777777776542       111   112334556777


Q ss_pred             HHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHh
Q 010994          148 DKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREM  227 (496)
Q Consensus       148 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~  227 (496)
                      ++|+++.+.+      .+...|..+...+.+.++++.|.+.|.++..         |..+...+...|+.+...++-+..
T Consensus       669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence            7777775332      2567777778878888888888777777632         334444455566666555555544


Q ss_pred             hcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          228 ESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       228 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      . ..+.      ++....+|.+.|++++|++++.++
T Consensus       734 ~-~~~~------~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          734 E-TTGK------FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             H-HTTC------HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             H-HcCc------hHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4 3332      233444455566666666666554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.48  E-value=0.006  Score=56.53  Aligned_cols=62  Identities=8%  Similarity=-0.090  Sum_probs=31.4

Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHC-----C-CCCC-hhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994          167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAK-----N-IFPD-NFSYRICINSYGARSDLEGMEIILREME  228 (496)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~  228 (496)
                      .+++.|..+|...|++++|..++++..+-     | -.|+ ..+++.|...|...|++++|+.++++..
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            34555555555555555555555554321     2 1122 2335555555666666665555554443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.45  E-value=0.06  Score=38.34  Aligned_cols=80  Identities=13%  Similarity=0.057  Sum_probs=46.2

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994          376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKG-WKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY  454 (496)
Q Consensus       376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  454 (496)
                      +...+..+...+...|+++.|...|+.+++....... -.+....+..+..++.+.|+++.|...++.+....|.+....
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3444555666666667777777777666653211111 123345666666677777777777777776666555555543


Q ss_pred             H
Q 010994          455 H  455 (496)
Q Consensus       455 ~  455 (496)
                      +
T Consensus        84 ~   84 (104)
T 2v5f_A           84 G   84 (104)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.26  Score=38.61  Aligned_cols=25  Identities=16%  Similarity=0.121  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFR  155 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~  155 (496)
                      ...|..|.+...+.|+++-|.+.|.
T Consensus        34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~   58 (177)
T 3mkq_B           34 SITWERLIQEALAQGNASLAEMIYQ   58 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHH
Confidence            3344444444444444444444443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.28  E-value=0.21  Score=36.72  Aligned_cols=60  Identities=12%  Similarity=0.106  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ....++.+...|+-|.-.+++..+.. +..|++...-.+..+|.+.|+..+|.+++.++-+
T Consensus        94 vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~  153 (172)
T 1wy6_A           94 VNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACK  153 (172)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            34444445555555555555555433 2334555555555555555555555555555554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.24  E-value=0.3  Score=38.21  Aligned_cols=129  Identities=9%  Similarity=0.083  Sum_probs=88.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChH
Q 010994          139 NCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLE  218 (496)
Q Consensus       139 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~  218 (496)
                      +...+.|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.+...         +..+.-.|.-.|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            4455678899888887765      2778899999999999999999998888643         455666677778887


Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994          219 GMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLE  298 (496)
Q Consensus       219 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  298 (496)
                      ...++-+... ..|-      ++....++.-.|+++++.++|.+.   |--|...      -.....|-.+.|.++.+.+
T Consensus        78 ~L~kla~iA~-~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           78 KLSKMQNIAQ-TRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHH-HTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHH-HCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence            7776665554 3332      555667777889999999888664   2212111      1112356667777776644

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.22  E-value=0.028  Score=39.13  Aligned_cols=69  Identities=17%  Similarity=0.046  Sum_probs=41.6

Q ss_pred             CCCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 010994          374 ATTPNSWAVVAAGYFDAGK---TERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM  449 (496)
Q Consensus       374 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  449 (496)
                      +.|+..+..+..++...++   .++|..+++++++       ..| +......+...+...|++++|...|+++.+..|+
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~-------~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ-------LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3455566666666666666   4666666666665       334 3345555556666666666666666666654433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.22  E-value=0.064  Score=37.25  Aligned_cols=62  Identities=6%  Similarity=-0.004  Sum_probs=32.3

Q ss_pred             CHHHHHHHHHHHhccCC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHh
Q 010994          416 DPKVITSILSKLGDEGS---VQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKA  477 (496)
Q Consensus       416 ~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~  477 (496)
                      |...+..+..++...++   .++|..++++.....|.++..+..+...+.+.|  ++|+..|+++.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~   71 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD   71 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444444444433322   455555555555555555555555555555555  455555555554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.20  E-value=0.031  Score=42.57  Aligned_cols=64  Identities=14%  Similarity=0.220  Sum_probs=27.9

Q ss_pred             CcccHHHHHHHHHhcC---chhHHHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          341 DTRIPNAVIIGYCNNG---LVQNAEAILEDLVEKGKAT--TPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       341 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +..+...+..++++.+   ++++++.+|+...+.+ .|  +...+-.+..+|.+.|++++|.++++.+++
T Consensus        31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3344444444444444   3334444444444432 11  122333344444555555555555555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.14  E-value=0.078  Score=40.40  Aligned_cols=92  Identities=13%  Similarity=0.079  Sum_probs=71.3

Q ss_pred             chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC---ChHHHHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHHhccC
Q 010994          357 LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG---KTERGFQCMKAALSVYVEGKGWKP--DPKVITSILSKLGDEG  431 (496)
Q Consensus       357 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g  431 (496)
                      ....+.+-|.+..+.|. ++..+...+..++++.+   +.++++.++++..+     .. .|  +...+..+.-++.+.|
T Consensus        13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~-----~~-~p~~~rd~lY~LAv~~~kl~   85 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLP-----KG-SKEEQRDYVFYLAVGNYRLK   85 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-----HS-CHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh-----cC-CccchHHHHHHHHHHHHHcc
Confidence            44566677777777665 58888888999999988   66699999999987     22 35  3455666777889999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHH
Q 010994          432 SVQDVEAFVAALRTVIPMNRQMYH  455 (496)
Q Consensus       432 ~~~~a~~~~~~~~~~~~~~~~~~~  455 (496)
                      ++++|.+.++.+.+..|.+....+
T Consensus        86 ~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           86 EYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHH
Confidence            999999999999987777765543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.87  E-value=0.061  Score=38.30  Aligned_cols=62  Identities=8%  Similarity=-0.002  Sum_probs=40.1

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcC------CCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKG------KATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      -+..+...+.+.|+++.|..+|+...+..      -.+....+..+..++.+.|+++.|+..++++++
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            34455666666666666666666655421      122455677777777788888888888877776

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.62  E-value=0.054  Score=46.19  Aligned_cols=89  Identities=13%  Similarity=0.024  Sum_probs=62.2

Q ss_pred             HHHHHHHHHhchhcCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhc-CCCCc
Q 010994          114 FLSAESYFSNLKDDEKT---YQTYGALLNCYVR-----QRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKT-GQYEK  184 (496)
Q Consensus       114 ~~~A~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-~~~~~  184 (496)
                      ...|...++++.+.+|+   ...|..+...|.+     .|+.++|.+.|++..+.+..-+..++......++.. |+.+.
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            46677777777777775   5577777777777     378888888888877754332466777777777774 77788


Q ss_pred             HHHHHHHHHHCCCC--CChh
Q 010994          185 VPDVLTEMKAKNIF--PDNF  202 (496)
Q Consensus       185 a~~~~~~m~~~~~~--p~~~  202 (496)
                      +.+.+++..+....  |+..
T Consensus       259 a~~~L~kAL~a~p~~~P~~~  278 (301)
T 3u64_A          259 FDEALDRALAIDPESVPHNK  278 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSSCH
T ss_pred             HHHHHHHHHcCCCCCCCChh
Confidence            88888887776554  5543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.50  E-value=0.23  Score=37.37  Aligned_cols=54  Identities=15%  Similarity=0.210  Sum_probs=34.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC
Q 010994          321 GEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT  375 (496)
Q Consensus       321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p  375 (496)
                      ++.++|.++|+.+.+.+-.- ..+|....+.-.++|++..|.+++...+..++.|
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            67777777777776542222 4445555555567777777777777777766653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=95.49  E-value=6.2e-06  Score=74.58  Aligned_cols=117  Identities=4%  Similarity=0.008  Sum_probs=94.0

Q ss_pred             hhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHH
Q 010994           62 VGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCY  141 (496)
Q Consensus        62 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~  141 (496)
                      +..|+.|..+..+.++..+|++-|-       ..-+|..+..++..+.+.|++++-..++..+++...++.+=+.|+-+|
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyI-------kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ay  126 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYI-------KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFAL  126 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSC-------CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHH-------hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            3467788999999999988887542       224688999999999999999999999998888766677778999999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHH
Q 010994          142 VRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEM  192 (496)
Q Consensus       142 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m  192 (496)
                      ++.++..+-.+.+       -.||..-...+..-|...|.++.|.-+|..+
T Consensus       127 Ak~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~i  170 (624)
T 3lvg_A          127 AKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV  170 (624)
T ss_dssp             HTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGS
T ss_pred             HhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhC
Confidence            9999977644433       2367777888899999999999988887654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.04  E-value=0.42  Score=36.01  Aligned_cols=103  Identities=13%  Similarity=0.154  Sum_probs=60.8

Q ss_pred             CHHHHHHHHHHHHhcCCh------HHHHHHHHHHHHhcccCcc-chHHHHHHH------HHhcCCHHHHHHHHHHHHhhc
Q 010994          236 DWSTYASAAHFYIKANLI------DKASDVLKKAEERLEQKDG-IGYNFLISL------YASLGNKSEVLRLWDLEKTAC  302 (496)
Q Consensus       236 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~-~~~~~l~~~------~~~~~~~~~a~~~~~~~~~~~  302 (496)
                      |..+|-..+...-+.|+.      ++..++|++....-+ |+. ..|...+..      +...++.++|.++|+.+...+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P-p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP-PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC-GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC-ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            344444445555555666      666677777666433 332 222222221      123478888888888777653


Q ss_pred             CCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010994          303 KRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY  340 (496)
Q Consensus       303 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~  340 (496)
                      ..- ...|.....-=.+.|++..|.+++......+..|
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            322 4444444444567888999999998888876554

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=94.84  E-value=0.31  Score=33.57  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=50.5

Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          392 KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       392 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                      +.-+..+-++.+..     ..+-|++.+..+.+.+|.+.+++..|.++|+.++........+|..+++-
T Consensus        25 D~~e~rrglN~l~~-----~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lqE   88 (109)
T 1v54_E           25 DAWELRKGMNTLVG-----YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE   88 (109)
T ss_dssp             CHHHHHHHHHHHTT-----SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHHH
Confidence            34456666666665     77889999999999999999999999999998888766666678777643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.62  E-value=0.57  Score=34.26  Aligned_cols=94  Identities=11%  Similarity=0.014  Sum_probs=58.8

Q ss_pred             HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHH---HHHHHHHHHHhhhcCCCCCC--CHHHHHHHHHHH
Q 010994          353 CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTER---GFQCMKAALSVYVEGKGWKP--DPKVITSILSKL  427 (496)
Q Consensus       353 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~p--~~~~~~~l~~~~  427 (496)
                      ........+.+-|......|. |+..+-..+..++.+..+...   ++.++++...      .-.|  .......+.-++
T Consensus        12 ~~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~------~~~p~~~Rd~lY~LAvg~   84 (126)
T 1nzn_A           12 VSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP------KGSKEEQRDYVFYLAVGN   84 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT------TSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh------cCCcchHHHHHHHHHHHH
Confidence            334445555566665555444 566666667777777776655   7777777664      2223  223344555677


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCHHH
Q 010994          428 GDEGSVQDVEAFVAALRTVIPMNRQM  453 (496)
Q Consensus       428 ~~~g~~~~a~~~~~~~~~~~~~~~~~  453 (496)
                      .+.|++++|.+.++.+.+..|.+...
T Consensus        85 yklg~Y~~A~~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           85 YRLKEYEKALKYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHhhhHHHHHHHHHHHHHhCCCCHHH
Confidence            78888888888888777766666544

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.55  E-value=0.44  Score=43.44  Aligned_cols=116  Identities=10%  Similarity=0.022  Sum_probs=72.3

Q ss_pred             ccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHH-HHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010994           75 RKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSA-ESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSH  153 (496)
Q Consensus        75 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  153 (496)
                      .|+.+.|.+.++.....-.-++-++...         ..+-.+ ...+++..     ..+...++..+...|++++|...
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~---------~~w~~~~r~~l~~~~-----~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRD---------FQFVEPFATALVEDK-----VLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTT---------STTHHHHHHHHHHHH-----HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCc---------hhHHHHHHHHHHHHH-----HHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788888888888877531111111100         111111 11111111     23445667777888888888888


Q ss_pred             HHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHH-----CCCCCChhhHH
Q 010994          154 FRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKA-----KNIFPDNFSYR  205 (496)
Q Consensus       154 ~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~  205 (496)
                      ++.+.... +-+...|..+|.++.+.|+..+|++.|+.+.+     .|+.|+..+-.
T Consensus       194 l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          194 LEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            88776652 34777888888888888888888888887654     38888876543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=94.52  E-value=0.025  Score=51.82  Aligned_cols=121  Identities=7%  Similarity=0.098  Sum_probs=62.7

Q ss_pred             CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHH
Q 010994           60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLN  139 (496)
Q Consensus        60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~  139 (496)
                      -|+..|..+|....+.|.+++-+..+....+..   -.|..-+.++-.|++.+++.+-+.++.     .||..-...+.+
T Consensus        81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~-----~~N~A~iq~VGD  152 (624)
T 3lvg_A           81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN-----GPNNAHIQQVGD  152 (624)
T ss_dssp             SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS-----CCSSSCTHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc-----CCCcccHHHHHH
Confidence            355567777777777777777777766655543   344555555556666655544332221     233333344444


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCC--------------------CCCChhHHHHHHHHHHhcCCCCcHHHH
Q 010994          140 CYVRQRQTDKALSHFRKMKEMG--------------------IALSTLTYNDIMCLYSKTGQYEKVPDV  188 (496)
Q Consensus       140 ~~~~~g~~~~A~~~~~~m~~~g--------------------~~p~~~~~~~l~~~~~~~~~~~~a~~~  188 (496)
                      -|...|.++.|.-+|..+....                    -.-++.||..+-.+|...+.+.-|.-.
T Consensus       153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqic  221 (624)
T 3lvg_A          153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMC  221 (624)
T ss_dssp             HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHH
T ss_pred             HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHh
Confidence            4555555554444443321110                    012455666666666666555554433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=94.48  E-value=0.31  Score=41.61  Aligned_cols=64  Identities=17%  Similarity=0.168  Sum_probs=30.2

Q ss_pred             chHHHHHHHHHhc-----CCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 010994          273 IGYNFLISLYASL-----GNKSEVLRLWDLEKTACKRYINRDYITMLEALMKL-GEHEEAEKVLKEWELS  336 (496)
Q Consensus       273 ~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~  336 (496)
                      ..|..+...|...     |+.++|.+.|++.....+..+..++......++.. |+.+.+.+.+++....
T Consensus       200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a  269 (301)
T 3u64_A          200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAI  269 (301)
T ss_dssp             HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence            3455555555442     45555555555544444322344444444444442 4555555555555444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.22  E-value=3.5  Score=38.27  Aligned_cols=151  Identities=10%  Similarity=0.012  Sum_probs=87.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcCchhHHHHHHHHHHh----cCCCCCH--hH
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYD-----TRIPNAVIIGYCNNGLVQNAEAILEDLVE----KGKATTP--NS  379 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~~--~~  379 (496)
                      ..+...+...|++.+|..++..+...-...+     ...+...+..|...+++..|..+++++..    ....|+.  ..
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            4567777788888888888888764322212     23456667778888888888888887642    2222221  35


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH----HHHHhccCCHHHHHHHHHHHHh-cCCCCHHHH
Q 010994          380 WAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI----LSKLGDEGSVQDVEAFVAALRT-VIPMNRQMY  454 (496)
Q Consensus       380 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l----~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~  454 (496)
                      +...+..+...+++.+|.+.|.++...+    ...-+...+...    +.+..-.+..+.-..++..... ..-++...|
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~----~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~  296 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQTD----AIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQ  296 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHH----HHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcc----cccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHH
Confidence            6677777888899999988888887622    112232222211    1111111111222222222222 223456778


Q ss_pred             HHHHHHHHhCC
Q 010994          455 HAFIKANIRNG  465 (496)
Q Consensus       455 ~~l~~~~~~~g  465 (496)
                      ..++.+|....
T Consensus       297 ~~L~k~f~~~~  307 (445)
T 4b4t_P          297 ESLVKLFTTNE  307 (445)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhch
Confidence            88888887766

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=93.81  E-value=1.4  Score=32.42  Aligned_cols=136  Identities=11%  Similarity=0.012  Sum_probs=79.7

Q ss_pred             HhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHH
Q 010994          283 ASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAE  362 (496)
Q Consensus       283 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  362 (496)
                      .-.|..++..++..+.....   +..-|+.+|--....-+-+-..++++.+-+.   .|..          .+|+.....
T Consensus        18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence            34566777777766555442   2344555554444444545555555554332   1221          123333333


Q ss_pred             HHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010994          363 AILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAA  442 (496)
Q Consensus       363 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  442 (496)
                      ..+-.+-     .+...+..-+..+..+|+-++..+++...+.      ..+|++.....+..+|.+.|+..+|.+++.+
T Consensus        82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~------n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~  150 (172)
T 1wy6_A           82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK------NNEVSASILVAIANALRRVGDERDATTLLIE  150 (172)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc------cCCCChHHHHHHHHHHHHhcchhhHHHHHHH
Confidence            3322221     1445556667777788888888888887653      5677888888888888888888888888776


Q ss_pred             HHh
Q 010994          443 LRT  445 (496)
Q Consensus       443 ~~~  445 (496)
                      ..+
T Consensus       151 AC~  153 (172)
T 1wy6_A          151 ACK  153 (172)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.51  E-value=7.3  Score=39.58  Aligned_cols=26  Identities=35%  Similarity=0.434  Sum_probs=18.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010994          134 YGALLNCYVRQRQTDKALSHFRKMKE  159 (496)
Q Consensus       134 ~~~li~~~~~~g~~~~A~~~~~~m~~  159 (496)
                      |..++.+..+.++.+.+.++|+.+..
T Consensus       233 y~~a~~~ai~LnD~~li~~if~~l~~  258 (963)
T 4ady_A          233 YLTLNKVVVNLNDAGLALQLFKKLKE  258 (963)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44566667777788888888877653

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.40  E-value=4.9  Score=37.26  Aligned_cols=99  Identities=9%  Similarity=0.006  Sum_probs=70.4

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhc--CCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH--H
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEK--GKATT---PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP--K  418 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~--~  418 (496)
                      ..|...|...|++.+|..++..+...  +....   ...+...+..|...+++..|..++.++...... ....|+.  .
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~-~~~~~~lk~~  219 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFK-NPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-SSCCHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcc-cCCcHHHHHH
Confidence            56788899999999999999998632  22211   236777888999999999999999987531110 1112222  3


Q ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          419 VITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       419 ~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                      .+...+..+...+++.+|.+.|..+..
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            556677778888999999887776654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.34  E-value=0.3  Score=44.52  Aligned_cols=77  Identities=14%  Similarity=0.186  Sum_probs=59.7

Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI  423 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l  423 (496)
                      ..++..+...|+.++|...+..+....+- +...|..++.++.+.|+..+|++.|++......+..|+.|+..+-...
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            45667777888888888888888776544 777888888888888888888888888877655566888888765444

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=93.29  E-value=0.84  Score=33.42  Aligned_cols=63  Identities=13%  Similarity=0.188  Sum_probs=50.8

Q ss_pred             hHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          393 TERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       393 ~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                      .-+..+-++.+..     ..+-|++.+....+.+|.+.+|+..|.++|+.++....+...+|..+++-
T Consensus        69 ~wElrrglN~l~~-----~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE  131 (152)
T 2y69_E           69 AWELRKGMNTLVG-----YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE  131 (152)
T ss_dssp             HHHHHHHHHHHTT-----SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence            3345555666655     77899999999999999999999999999999988776667778877643

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.21  E-value=0.52  Score=46.63  Aligned_cols=51  Identities=10%  Similarity=0.048  Sum_probs=37.2

Q ss_pred             HHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH
Q 010994          426 KLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK  476 (496)
Q Consensus       426 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~  476 (496)
                      -|...|+++.|..+-++.....|.+-.+|..|..+|...|  +.|+-.++.+.
T Consensus       346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            3556677777877777777777777778888888888777  67776666653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.89  E-value=0.57  Score=34.25  Aligned_cols=82  Identities=15%  Similarity=0.188  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhH---HHHHHHHHHhcCCC-CCHhHHHHHHHHHHhcCChHHHHH
Q 010994          323 HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQN---AEAILEDLVEKGKA-TTPNSWAVVAAGYFDAGKTERGFQ  398 (496)
Q Consensus       323 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~  398 (496)
                      +..+.+-+......|. ++..+-..+..++.+..+...   ++.+++.+...+.+ -.....-.+..++.+.|++++|.+
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3344444444433332 344444444555555544333   55555555544210 022334445566666666666666


Q ss_pred             HHHHHHH
Q 010994          399 CMKAALS  405 (496)
Q Consensus       399 ~~~~~~~  405 (496)
                      +++.+++
T Consensus        96 ~~~~lL~  102 (126)
T 1nzn_A           96 YVRGLLQ  102 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6666665

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.74  E-value=9.5  Score=38.78  Aligned_cols=257  Identities=13%  Similarity=0.017  Sum_probs=135.0

Q ss_pred             HHhhcCChHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc-------cCccchHHHHHHH
Q 010994          210 SYGARSDLEGMEIILREMESQP-HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE-------QKDGIGYNFLISL  281 (496)
Q Consensus       210 ~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-------~~~~~~~~~l~~~  281 (496)
                      +....|+.++++.++....... .-.+....-..+.-+....|..+++..++.......-       .+....-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            4556788888888877665111 1112223333445556666766677777776554321       0111112223223


Q ss_pred             HHhcCC-HHHHHHHHHHHHhhcCCCCchhHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCch
Q 010994          282 YASLGN-KSEVLRLWDLEKTACKRYINRDYI--TMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLV  358 (496)
Q Consensus       282 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  358 (496)
                      +.-.|. -+++.+.+..+..... .......  .+...+.-.|+-+....++..+.+.. .-+..-...+.-++.-.|+.
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~  540 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ  540 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence            333332 2455555554544322 1111122  23333455677777788888776542 11222222333344467888


Q ss_pred             hHHHHHHHHHHhcCCCCCHhH-H---HHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHH
Q 010994          359 QNAEAILEDLVEKGKATTPNS-W---AVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQ  434 (496)
Q Consensus       359 ~~a~~~~~~~~~~~~~p~~~~-~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  434 (496)
                      +.+..+.+.+...   .++.. |   .++..+|+..|+.....++++.+..      ....+......+.-++...|+.+
T Consensus       541 e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~------d~~d~VRraAViaLGlI~~g~~e  611 (963)
T 4ady_A          541 ELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVS------DSNDDVRRAAVIALGFVLLRDYT  611 (963)
T ss_dssp             GGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH------CSCHHHHHHHHHHHHHHTSSSCS
T ss_pred             HHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc------CCcHHHHHHHHHHHHhhccCCHH
Confidence            8888888888763   13322 2   2344567778887666668888876      22222332333333444466766


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC---CcHHHHHHHHHh
Q 010994          435 DVEAFVAALRTVIPMNRQMYHAFIKANIRNG---KGVDELLDSMKA  477 (496)
Q Consensus       435 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~a~~~~~~m~~  477 (496)
                      .+.++++.+.+...|.+..-..+.-+....|   .++++++..+..
T Consensus       612 ~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          612 TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            6777777666544454444444444444444   467777777764

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=92.13  E-value=3.1  Score=44.09  Aligned_cols=144  Identities=11%  Similarity=-0.024  Sum_probs=80.1

Q ss_pred             HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC---------------
Q 010994          206 ICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK---------------  270 (496)
Q Consensus       206 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---------------  270 (496)
                      .++..+...+..+.+.++.....      .+....-.+..+|...|++++|.+.|.+... ++..               
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccc
Confidence            34555556666666666554443      1222233466777788888888888866421 1100               


Q ss_pred             --------ccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCc----hhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010994          271 --------DGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYIN----RDYITMLEALMKLGEHEEAEKVLKEWELSGN  338 (496)
Q Consensus       271 --------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  338 (496)
                              -..-|..++..+.+.+.++.+.++-+...+.....+.    ..|..+..++...|++++|...+-.+.....
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~  969 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL  969 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence                    0012556666667777777777766655544332221    1456667777777777777777766654422


Q ss_pred             CCCcccHHHHHHHHHhcCch
Q 010994          339 SYDTRIPNAVIIGYCNNGLV  358 (496)
Q Consensus       339 ~~~~~~~~~l~~~~~~~g~~  358 (496)
                        -......++..+|..|..
T Consensus       970 --r~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          970 --KKSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             --CHHHHHHHHHHHHHHCCH
T ss_pred             --HHHHHHHHHHHHHhCCCh
Confidence              223445555555555443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.55  E-value=1.1  Score=44.33  Aligned_cols=54  Identities=11%  Similarity=0.062  Sum_probs=39.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010994          279 ISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEW  333 (496)
Q Consensus       279 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  333 (496)
                      ...+...|+++-|+++-++.....+ .+-.+|..|..+|...|+++.|+-.++.+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3445667888888888877666554 55677888888888888888888777766

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.54  E-value=12  Score=33.90  Aligned_cols=165  Identities=11%  Similarity=0.034  Sum_probs=84.8

Q ss_pred             HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHhc-CChHHHHHHHHHHHHhcccCccchH----
Q 010994          204 YRICINSYGARSDLEGMEIILREMESQPHIVLD---WSTYASAAHFYIKA-NLIDKASDVLKKAEERLEQKDGIGY----  275 (496)
Q Consensus       204 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~----  275 (496)
                      ...+...|.+.|+.++...++.....-.+..+-   ......++..+... +..+.-.++..+..+..- .+..+|    
T Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~~  100 (394)
T 3txn_A           22 ILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQS  100 (394)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            344555566666666666665555411111111   11223444444442 223333444444333211 122333    


Q ss_pred             --HHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCch-----hHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCCcccHH
Q 010994          276 --NFLISLYASLGNKSEVLRLWDLEKTACKRYINR-----DYITMLEALMKLGEHEEAEKVLKEWELS--GNSYDTRIPN  346 (496)
Q Consensus       276 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~  346 (496)
                        ..++..|...|++.+|.+++..+.......|..     .+..-+..|...+++.++...+......  .+.+++.+..
T Consensus       101 l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a  180 (394)
T 3txn_A          101 LEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQG  180 (394)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHH
Confidence              146677778888888888777777665544432     2445566677778888888777766532  1222332221


Q ss_pred             HH----HHHHH-hcCchhHHHHHHHHHH
Q 010994          347 AV----IIGYC-NNGLVQNAEAILEDLV  369 (496)
Q Consensus       347 ~l----~~~~~-~~g~~~~a~~~~~~~~  369 (496)
                      .+    ...+. ..+++..|...|-+..
T Consensus       181 ~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          181 ALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            11    12244 6777887777666553

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.16  E-value=12  Score=33.71  Aligned_cols=241  Identities=13%  Similarity=0.080  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhccc-C---ccchHHHHHHHHHhc-CCHHHHHHHHHHHHhhcCCCCchhH---
Q 010994          239 TYASAAHFYIKANLIDKASDVLKKAEERLEQ-K---DGIGYNFLISLYASL-GNKSEVLRLWDLEKTACKRYINRDY---  310 (496)
Q Consensus       239 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~---  310 (496)
                      ....|...|.+.|+.++..+++......-.. +   .......++..+... +..+.-.++.....+... ....+|   
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~r~flr~   99 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAK-QEKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence            3456889999999999999998876443211 1   123456677777654 334444444444433222 222333   


Q ss_pred             ---HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----ccHHHHHHHHHhcCchhHHHHHHHHHHhc--CCCCCHhHH
Q 010994          311 ---ITMLEALMKLGEHEEAEKVLKEWELSGNSYDT-----RIPNAVIIGYCNNGLVQNAEAILEDLVEK--GKATTPNSW  380 (496)
Q Consensus       311 ---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~  380 (496)
                         ..++..|...|++.+|..++..+.+.--..|.     .++-.-+..|...+++.++...+......  .+.+++...
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~  179 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ  179 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence               25788999999999999999988864222232     23455667788899999999999887642  232344332


Q ss_pred             H----HHHHHHH-hcCChHHHHHHHHHHHHhhhcCCCCCCC---HHHHHHHHHHHhccCCHHHHHHHHH-HH-HhcCCCC
Q 010994          381 A----VVAAGYF-DAGKTERGFQCMKAALSVYVEGKGWKPD---PKVITSILSKLGDEGSVQDVEAFVA-AL-RTVIPMN  450 (496)
Q Consensus       381 ~----~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~-~~-~~~~~~~  450 (496)
                      .    .-...+. ..+++..|...|-++...|- ..+ .|.   ...|..+. +... ++..+...++. .. .....|.
T Consensus       180 a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~-~~~-~~~~~~~lkYlvL~-aLl~-~~r~el~~~l~~~~~~~~~~pe  255 (394)
T 3txn_A          180 GALDLQSGILHAADERDFKTAFSYFYEAFEGFD-SVD-SVKALTSLKYMLLC-KIML-GQSDDVNQLVSGKLAITYSGRD  255 (394)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT-TTC-HHHHHHHHHHHHHH-HHHT-TCGGGHHHHHHSHHHHTTCSHH
T ss_pred             HHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc-ccc-cHHHHHHHHHHHHH-HHHc-CCHHHHHHHhccccccccCCcc
Confidence            2    2233455 78999999999999876441 011 121   11232222 2222 33333333332 21 2123455


Q ss_pred             HHHHHHHHHHHHhCC-CcHHHHHHHHHhCCCCCChh
Q 010994          451 RQMYHAFIKANIRNG-KGVDELLDSMKADGIDEDEE  485 (496)
Q Consensus       451 ~~~~~~l~~~~~~~g-~~a~~~~~~m~~~g~~p~~~  485 (496)
                      ...+..++.+|.... .+...++..... .+..|..
T Consensus       256 i~~l~~L~~a~~~~dl~~f~~iL~~~~~-~l~~D~~  290 (394)
T 3txn_A          256 IDAMKSVAEASHKRSLADFQAALKEYKK-ELAEDVI  290 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHSTT-TTTTSHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHhcChH
Confidence            666777888877766 444444444322 2444553

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=89.02  E-value=3.3  Score=31.86  Aligned_cols=27  Identities=11%  Similarity=0.003  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994          418 KVITSILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       418 ~~~~~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      ..--.+..+|.+.|++++|..+++.+.
T Consensus       123 Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          123 EVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            344446667788888888888877653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.52  E-value=21  Score=37.75  Aligned_cols=143  Identities=10%  Similarity=0.074  Sum_probs=70.3

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcC-C----------------
Q 010994           67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDE-K----------------  129 (496)
Q Consensus        67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~----------------  129 (496)
                      .++..+...+.++-+.++..+...      +|...-.....+...|++++|...|.+....- .                
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence            455556666666666665544322      23332333456667777777777776653210 0                


Q ss_pred             -------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCC
Q 010994          130 -------TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALST----LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIF  198 (496)
Q Consensus       130 -------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~  198 (496)
                             -..-|.-++..+-+.+.++.+.++-....+..-+-+.    ..|..+...+...|++++|...+-.+.....+
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r  970 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK  970 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence                   0122444555555556665555554444332111111    13555556666666666666555555443222


Q ss_pred             CChhhHHHHHHHHhhcCCh
Q 010994          199 PDNFSYRICINSYGARSDL  217 (496)
Q Consensus       199 p~~~~~~~li~~~~~~~~~  217 (496)
                        ......++...|..|+.
T Consensus       971 --~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          971 --KSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             --HHHHHHHHHHHHHHCCH
T ss_pred             --HHHHHHHHHHHHhCCCh
Confidence              23344444444444443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.22  E-value=6.5  Score=36.24  Aligned_cols=62  Identities=19%  Similarity=-0.025  Sum_probs=30.9

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKAT--TPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +...+...|.+.|+++.|.+.+.++.+.-..+  -...+-.++..+...+++..+...+.++..
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~  196 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS  196 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            34445555555555555555555555431111  123444455555555555555555555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=86.09  E-value=4  Score=30.02  Aligned_cols=81  Identities=10%  Similarity=-0.009  Sum_probs=51.1

Q ss_pred             HHHHHHHc-CCCCChhhHHHHHHHHHhccCh---hHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhc
Q 010994           49 ELDNWVKN-GNKVRVGELQRIIRDLRKRKRF---SQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNL  124 (496)
Q Consensus        49 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  124 (496)
                      +-+.+.++ +..|+..+-..+..++.+..+.   .+++.+++.+.+.+. ....+-.-++.-.+.+.|+++.|.+..+.+
T Consensus        26 l~~qy~~E~~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~-~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~l  104 (134)
T 3o48_A           26 LRQQVVSEGGPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAE-SRRRECLYYLTIGCYKLGEYSMAKRYVDTL  104 (134)
T ss_dssp             HHHHHHHTTGGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc-chhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            33444454 6777888877888888887654   468888888887651 011222333344555777777777777777


Q ss_pred             hhcCCC
Q 010994          125 KDDEKT  130 (496)
Q Consensus       125 ~~~~~~  130 (496)
                      .+.+|+
T Consensus       105 L~~eP~  110 (134)
T 3o48_A          105 FEHERN  110 (134)
T ss_dssp             HTTCTT
T ss_pred             HhhCCC
Confidence            776663

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=85.58  E-value=6.3  Score=33.47  Aligned_cols=20  Identities=10%  Similarity=-0.099  Sum_probs=11.2

Q ss_pred             hhhHHHhhcCHHHHHHHHHh
Q 010994          104 QLDLIGRVHGFLSAESYFSN  123 (496)
Q Consensus       104 ~~~~~~~~~~~~~A~~~~~~  123 (496)
                      .+...+..|+.+....+++.
T Consensus        42 ~L~~A~~~g~~~~v~~Ll~~   61 (285)
T 1wdy_A           42 PLHNAVQMSREDIVELLLRH   61 (285)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHc
Confidence            35555566666655555543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=85.42  E-value=18  Score=31.66  Aligned_cols=54  Identities=7%  Similarity=-0.026  Sum_probs=26.4

Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcch--hhhhhhHHHhhcCHHHHHHHHHh
Q 010994           66 QRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCD--HAVQLDLIGRVHGFLSAESYFSN  123 (496)
Q Consensus        66 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~A~~~~~~  123 (496)
                      ++.+..-++.|+.+-+..+++    .|..+...+.  -..-+...+..|+.+.+.-+++.
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~----~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~   81 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLE----GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH   81 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH----HTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHH----CCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            344445567777665555443    3311111111  11235556667777766666554

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=85.02  E-value=11  Score=31.89  Aligned_cols=14  Identities=29%  Similarity=0.235  Sum_probs=6.5

Q ss_pred             HHHHHHhcCCHHHH
Q 010994          137 LLNCYVRQRQTDKA  150 (496)
Q Consensus       137 li~~~~~~g~~~~A  150 (496)
                      .+...++.|+.+..
T Consensus         8 ~L~~A~~~g~~~~v   21 (285)
T 1wdy_A            8 LLIKAVQNEDVDLV   21 (285)
T ss_dssp             HHHHHHHTTCHHHH
T ss_pred             HHHHHHHcCCHHHH
Confidence            33444455555433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=84.99  E-value=10  Score=34.94  Aligned_cols=208  Identities=12%  Similarity=0.065  Sum_probs=91.6

Q ss_pred             HHHHHHHhccChhHHHHHHHHHHhCCCCCCC-cchhhhhhhHHHhhcCHHHHHHHHHhchhcC-CCHHHHHHHHHHHHhc
Q 010994           67 RIIRDLRKRKRFSQALEVSDWMNRKGICVFA-PCDHAVQLDLIGRVHGFLSAESYFSNLKDDE-KTYQTYGALLNCYVRQ  144 (496)
Q Consensus        67 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~li~~~~~~  144 (496)
                      +.+...+..|+.+-+..+    .+.+..+.. .......+...+..|+.+.+..+++.-.... .+..- .+.+...++.
T Consensus        16 t~L~~Aa~~g~~~~v~~L----l~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g-~t~L~~A~~~   90 (437)
T 1n11_A           16 TPLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-QTPLHCAARI   90 (437)
T ss_dssp             CHHHHHHHHTCHHHHHHH----HHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTS-CCHHHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHH----HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCC-CCHHHHHHHC
Confidence            345555677776544444    444421111 1112234666777888887777776532221 12111 2234445566


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCh---hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhh--HHHHHHHHhhcCChHH
Q 010994          145 RQTDKALSHFRKMKEMGIALST---LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFS--YRICINSYGARSDLEG  219 (496)
Q Consensus       145 g~~~~A~~~~~~m~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~~~~~~  219 (496)
                      |+.+-+.-+    .+.|..|+.   ..++.|. ..+..|+.+    +++.+.+.+..++...  -.+.+...+..|+.+-
T Consensus        91 g~~~~v~~L----l~~ga~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~  161 (437)
T 1n11_A           91 GHTNMVKLL----LENNANPNLATTAGHTPLH-IAAREGHVE----TVLALLEKEASQACMTKKGFTPLHVAAKYGKVRV  161 (437)
T ss_dssp             TCHHHHHHH----HHHTCCTTCCCTTCCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred             CCHHHHHHH----HhCCCCCCCCCCCCCcHHH-HHHHcCCHH----HHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHH
Confidence            776544333    344544432   2223333 334455543    3344444443322111  1123444556677765


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccch---HHHHHHHHHhcCCHHHHHHHHH
Q 010994          220 MEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIG---YNFLISLYASLGNKSEVLRLWD  296 (496)
Q Consensus       220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~  296 (496)
                      +..+++.-. ..+. .+.... +.+...+..|+.+-+.    .+.+.+..++...   ++. +...+..|+.+-+..+++
T Consensus       162 v~~Ll~~g~-~~~~-~~~~g~-t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~~~~~Ll~  233 (437)
T 1n11_A          162 AELLLERDA-HPNA-AGKNGL-TPLHVAVHHNNLDIVK----LLLPRGGSPHSPAWNGYTP-LHIAAKQNQVEVARSLLQ  233 (437)
T ss_dssp             HHHHHHTTC-CTTC-CCSSCC-CHHHHHHHTTCHHHHH----HHGGGTCCSCCCCTTCCCH-HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhCCC-CCCC-CCCCCC-CHHHHHHHcCCHHHHH----HHHhCCCCCCCcCCCCCCH-HHHHHHcCCHHHHHHHHH
Confidence            555544322 1111 111111 1334445566655433    3333454443322   222 334456666655554443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=84.62  E-value=9.2  Score=29.42  Aligned_cols=21  Identities=19%  Similarity=0.265  Sum_probs=10.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q 010994          313 MLEALMKLGEHEEAEKVLKEW  333 (496)
Q Consensus       313 l~~~~~~~~~~~~a~~~~~~~  333 (496)
                      +..+|.+.++.++|..+++.+
T Consensus       128 ia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          128 LAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHHHHCCHHHHHHHHhcC
Confidence            444445555555555554443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=84.51  E-value=8.6  Score=35.44  Aligned_cols=99  Identities=11%  Similarity=0.008  Sum_probs=65.8

Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHCC--CCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHH-
Q 010994          167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKN--IFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASA-  243 (496)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-  243 (496)
                      .++..+...|.+.|++++|.+.|.++...-  ...-...+-..++.+...+++..+...+++......-.+++...+.+ 
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            356778888889999999999998887753  22234567778888888899998888887765211111333332211 


Q ss_pred             ---HHHHHhcCChHHHHHHHHHHHH
Q 010994          244 ---AHFYIKANLIDKASDVLKKAEE  265 (496)
Q Consensus       244 ---i~~~~~~~~~~~a~~~~~~m~~  265 (496)
                         ...+...+++..|-..|-+...
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~  236 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLA  236 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhc
Confidence               2223456888888888877654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=84.29  E-value=10  Score=27.85  Aligned_cols=46  Identities=11%  Similarity=0.211  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          360 NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       360 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      +++.+++++.+.+..-....+-.+..++.+.|++++|.++.+.+++
T Consensus        61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3444444444433111223344444555555555555555555543

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=81.42  E-value=41  Score=32.63  Aligned_cols=76  Identities=4%  Similarity=-0.172  Sum_probs=36.5

Q ss_pred             HHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhc
Q 010994          171 DIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKA  250 (496)
Q Consensus       171 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~  250 (496)
                      ..+..+.+.+++......+..     .+.+...-.....+....|+..+|....+.+= ..+. .....+..++..+.+.
T Consensus        77 ~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW-~~~~-~~p~~c~~l~~~~~~~  149 (618)
T 1qsa_A           77 RFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELW-LTGK-SQPNACDKLFSVWRAS  149 (618)
T ss_dssp             HHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH-SCSS-CCCTHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH-hCCC-CCcHHHHHHHHHHHHC
Confidence            334445555555444433221     12233333334556666677666666665554 2222 2334455566666655


Q ss_pred             CCh
Q 010994          251 NLI  253 (496)
Q Consensus       251 ~~~  253 (496)
                      |.+
T Consensus       150 g~l  152 (618)
T 1qsa_A          150 GKQ  152 (618)
T ss_dssp             TCS
T ss_pred             CCC
Confidence            544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	496
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.002
d1qqea_	290	a.118.8.1 (A:) Vesicular transport protein sec17 {	0.002

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 2e-04
 Identities = 23/170 (13%), Positives = 50/170 (29%), Gaps = 5/170 (2%)

Query: 118 ESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYS 177
            +Y   L         +G L   Y  Q   D A+  +R+  E+        Y ++     
Sbjct: 224 AAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282

Query: 178 KTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDW 237
           + G   +  D             +    +        +  E + +  + +E  P      
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH 342

Query: 238 STYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGN 287
           S  AS      +   + +A    K+A   +       Y+ + +    + +
Sbjct: 343 SNLASV---LQQQGKLQEALMHYKEAIR-ISPTFADAYSNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 3e-04
 Identities = 34/325 (10%), Positives = 77/325 (23%), Gaps = 35/325 (10%)

Query: 114 FLSAESYFSN-LKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKE-----------MG 161
           F +AE +     + +         L + + + R+ D++        +           +G
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74

Query: 162 IALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGME 221
                         + +     K   +   +               + +Y +        
Sbjct: 75  NVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL 134

Query: 222 IILREMESQPHIVLDWSTYASA-------------------AHFYIKANLIDKASDVLKK 262
             +R         L     A A                      +     I  A    +K
Sbjct: 135 YCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEK 194

Query: 263 AEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGE 322
           A   L+      Y  L ++          +  +     +        +  +     + G 
Sbjct: 195 AVT-LDPNFLDAYINLGNVLKEARIFDRAVAAYL-RALSLSPNHAVVHGNLACVYYEQGL 252

Query: 323 HEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAV 382
            + A    +   +    +       +       G V  AE      +     T  +S   
Sbjct: 253 IDLAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNN 310

Query: 383 VAAGYFDAGKTERGFQCMKAALSVY 407
           +A    + G  E   +  + AL V+
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEVF 335

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 33/246 (13%), Positives = 71/246 (28%), Gaps = 6/246 (2%)

Query: 87  WMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQ 146
               +           +   L        +   Y   ++        +  L   +  Q +
Sbjct: 125 VSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGE 184

Query: 147 TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRI 206
              A+ HF K   +        Y ++  +  +   +++         + +         +
Sbjct: 185 IWLAIHHFEKAVTLDPNFLD-AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNL 243

Query: 207 CINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER 266
               Y        ++   R +E QPH       Y + A+   +   + +A D    A   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQPH---FPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 267 LEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEA 326
                    N L ++    GN  E +RL+  +           +  +   L + G+ +EA
Sbjct: 301 CPTHADS-LNNLANIKREQGNIEEAVRLYR-KALEVFPEFAAAHSNLASVLQQQGKLQEA 358

Query: 327 EKVLKE 332
               KE
Sbjct: 359 LMHYKE 364

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 29/247 (11%), Positives = 61/247 (24%), Gaps = 27/247 (10%)

Query: 113 GFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTL----- 167
           GF+   S   + K +E            Y  +++ + A   F K  +             
Sbjct: 20  GFMKLFSGSDSYKFEEAA-DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGN 78

Query: 168 TYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREM 227
           TY +    +   G      D L            F                 +    + +
Sbjct: 79  TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAI 138

Query: 228 ESQP----------HIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNF 277
           +              + L    +   A          +ASD+  K  +         ++ 
Sbjct: 139 DCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS- 197

Query: 278 LISLYASLGNKSEVLRLWDLEKTACKRYINRD----------YITMLEALMKLGEHEEAE 327
           L   +   G                +   + D          ++  L   +  G+ E+  
Sbjct: 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLS 257

Query: 328 KVLKEWE 334
           +  KE++
Sbjct: 258 EHCKEFD 264

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	496
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.93
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.65
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.62
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.36
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.3
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.28
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.24
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.21
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.18
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.15
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.11
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.1
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.74
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.66
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.64
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.63
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.62
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.56
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.45
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.44
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.39
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.38
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.36
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.32
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.29
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.26
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.24
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.2
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.18
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.09
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.09
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.04
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.03
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.03
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.01
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.99
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.91
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.87
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.82
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.81
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.68
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.56
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.54
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.51
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.41
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.4
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.03
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.9
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.79
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.73
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.53
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.13
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	94.93
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	93.17
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	92.85
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	92.39
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.91

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.9e-23  Score=191.55  Aligned_cols=381  Identities=12%  Similarity=-0.019  Sum_probs=316.0

Q ss_pred             HHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCC
Q 010994           68 IIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQ  146 (496)
Q Consensus        68 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~  146 (496)
                      +...+.+.|++++|++.++.+.+..  |.++..+..+..++.+.|++++|...|+++.+..| +..+|..+..++.+.|+
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            4556778999999999999999875  34567777778889999999999999999998888 58899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHH
Q 010994          147 TDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILRE  226 (496)
Q Consensus       147 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~  226 (496)
                      +++|+..+....+.... +...+..........+....+............ ................+....+...+..
T Consensus        83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccccccccccccccc-ccccccccccccccccccccccccccccccccc-ccccccccccccccccchhhhhHHHHHH
Confidence            99999999999876433 556666666667777777777777776665533 3445555566667778888888888877


Q ss_pred             hhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC
Q 010994          227 MESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI  306 (496)
Q Consensus       227 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  306 (496)
                      .. .... .+...+..+...+...|++++|...+++..+..+ .+..+|..+...+...|++++|...++......+ .+
T Consensus       161 ~~-~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~  236 (388)
T d1w3ba_         161 AI-ETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NH  236 (388)
T ss_dssp             HH-HHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TC
T ss_pred             hh-ccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hH
Confidence            76 3332 5567788888999999999999999999877543 4567888999999999999999999998877665 56


Q ss_pred             chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHH
Q 010994          307 NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAG  386 (496)
Q Consensus       307 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  386 (496)
                      ...+..+...+.+.|++++|...+++..+..+ .+..++..+...+...|++++|...++......+. +...+..+...
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~  314 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT-HADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCc-cchhhhHHHHH
Confidence            67788899999999999999999999988642 35677888999999999999999999998887544 78889999999


Q ss_pred             HHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          387 YFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       387 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      +...|++++|+..|+++++       +.| +..++..+..++...|++++|...|++..+..|.++..|..++.+|.+.|
T Consensus       315 ~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         315 KREQGNIEEAVRLYRKALE-------VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTT-------SCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred             HHHCCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            9999999999999999976       455 46788889999999999999999999998888888999999999998776

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-22  Score=185.45  Aligned_cols=373  Identities=13%  Similarity=0.074  Sum_probs=309.0

Q ss_pred             hhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCC
Q 010994          105 LDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYE  183 (496)
Q Consensus       105 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~  183 (496)
                      ...+.+.|++++|++.++++.+..| ++.++..+..++.+.|++++|...|++..+... -+..+|..+..++.+.|+++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccc
Confidence            4556788999999999999998888 588999999999999999999999999988643 36789999999999999999


Q ss_pred             cHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 010994          184 KVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKA  263 (496)
Q Consensus       184 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  263 (496)
                      +|...+........ .+..............+....+........ .... ................+....+...+...
T Consensus        85 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          85 EAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSAL-QYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHH-HHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccc-cccc-ccccccccccccccccchhhhhHHHHHHh
Confidence            99999999988643 344445555555556666666666555554 2222 44455556777788888999999988887


Q ss_pred             HHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc
Q 010994          264 EERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR  343 (496)
Q Consensus       264 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  343 (496)
                      ....+ .+...+..+...+...|++++|...++......+ .+...+..+...+...|++++|...+....... ..+..
T Consensus       162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~  238 (388)
T d1w3ba_         162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV  238 (388)
T ss_dssp             HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred             hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence            76543 4567788888999999999999999998887665 556788899999999999999999999998875 33566


Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHH
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSI  423 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l  423 (496)
                      .+..+...+.+.|++++|...|++..+..+. +..+|..+...+...|++++|++.++.+..      ..+.+...+..+
T Consensus       239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~l  311 (388)
T d1w3ba_         239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALR------LCPTHADSLNNL  311 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHH------HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhc------cCCccchhhhHH
Confidence            7788889999999999999999999987654 678899999999999999999999999987      456677889999


Q ss_pred             HHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChh-HHHHHHhh
Q 010994          424 LSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEE-TKEILVCT  493 (496)
Q Consensus       424 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~-t~~~l~~~  493 (496)
                      ...+...|++++|...+++..+..|.++.+|..+..+|.+.|  ++|+..|++..+  +.|+.. .+..|-..
T Consensus       312 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~  382 (388)
T d1w3ba_         312 ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNT  382 (388)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            999999999999999999998888889999999999999999  899999999887  567654 45555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.6e-14  Score=125.84  Aligned_cols=224  Identities=13%  Similarity=0.054  Sum_probs=116.9

Q ss_pred             HHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcH
Q 010994          107 LIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKV  185 (496)
Q Consensus       107 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a  185 (496)
                      .+.+.|++++|+..|+++.+..| +..+|..+..++...|++++|...|++..+.... +...|..+..++...|++++|
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A  106 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQA  106 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccccccc
Confidence            33444555555555555444444 3455555555555555555555555555443221 344555555555555555555


Q ss_pred             HHHHHHHHHCCCCCChhh----------------HHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh
Q 010994          186 PDVLTEMKAKNIFPDNFS----------------YRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIK  249 (496)
Q Consensus       186 ~~~~~~m~~~~~~p~~~~----------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~  249 (496)
                      .+.+++.....  |+...                ....+..+...+..++|...+.+......-..+..++..+...+..
T Consensus       107 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~  184 (323)
T d1fcha_         107 CEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL  184 (323)
T ss_dssp             HHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence            55555554421  11110                0011112223344555555555544111112345555666666666


Q ss_pred             cCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHH
Q 010994          250 ANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKV  329 (496)
Q Consensus       250 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  329 (496)
                      .|++++|...|++.....+ .+..+|..+..++...|++++|.+.|+......+ .+...+..+..+|.+.|++++|...
T Consensus       185 ~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~  262 (323)
T d1fcha_         185 SGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEH  262 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHHCCCHHHHHHH
Confidence            6667777666666655432 3445566666666666666666666666555443 3445566666666666666666666


Q ss_pred             HHHHHh
Q 010994          330 LKEWEL  335 (496)
Q Consensus       330 ~~~~~~  335 (496)
                      |++..+
T Consensus       263 ~~~al~  268 (323)
T d1fcha_         263 FLEALN  268 (323)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.2e-13  Score=123.10  Aligned_cols=236  Identities=10%  Similarity=0.010  Sum_probs=170.5

Q ss_pred             HHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhc
Q 010994          206 ICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASL  285 (496)
Q Consensus       206 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~  285 (496)
                      .....+.+.|++++|+..|+++. +.++ -+..+|..+..+|...|++++|...|++..+..+ -+...|..+..+|...
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al-~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAV-QQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH-HSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH-HhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccc
Confidence            45667888999999999999987 5554 5678888899999999999999999999877553 4567788888899999


Q ss_pred             CCHHHHHHHHHHHHhhcCCCCch--------------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCcccHHHHHH
Q 010994          286 GNKSEVLRLWDLEKTACKRYINR--------------DYITMLEALMKLGEHEEAEKVLKEWELSGN-SYDTRIPNAVII  350 (496)
Q Consensus       286 ~~~~~a~~~~~~~~~~~~~~~~~--------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~  350 (496)
                      |++++|.+.++......+.....              .....+..+...+...+|...+....+... ..+..++..+..
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~  180 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGV  180 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred             ccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            99999999998777654411110              011122233444567777777777665432 223455667777


Q ss_pred             HHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhc
Q 010994          351 GYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGD  429 (496)
Q Consensus       351 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  429 (496)
                      .+...|++++|...|++.....+. +...|..+...|...|++++|++.|+++++       +.| +...+..+..+|.+
T Consensus       181 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         181 LFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALE-------LQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHH-------HhhccHHHHHHHHHHHHH
Confidence            788888888888888888776544 677788888888888888888888888876       344 45677778888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCHH
Q 010994          430 EGSVQDVEAFVAALRTVIPMNRQ  452 (496)
Q Consensus       430 ~g~~~~a~~~~~~~~~~~~~~~~  452 (496)
                      .|++++|...|++..+..|.+..
T Consensus       253 ~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC--
T ss_pred             CCCHHHHHHHHHHHHHhCCcChh
Confidence            88888888888877665444443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-10  Score=101.47  Aligned_cols=216  Identities=10%  Similarity=0.005  Sum_probs=166.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcC-CHHHHHHHHHHHHhhcCCCCchhHHHHHH
Q 010994          237 WSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLG-NKSEVLRLWDLEKTACKRYINRDYITMLE  315 (496)
Q Consensus       237 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  315 (496)
                      ..+|+.+...+.+.+..++|+.+++++++..+ -+..+|+....++...| ++++|+..++......+ .+..+|..+..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhH
Confidence            45566677778888899999999999888654 56677888888888776 48999999988877766 66788888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC---
Q 010994          316 ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK---  392 (496)
Q Consensus       316 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---  392 (496)
                      .+.+.|++++|...++.+.+... .+...|..+...+.+.|++++|+..++++++.++. +...|+.+...+.+.+.   
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp-~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDA-KNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHhhccHHHHHHHHhhhhhhhh-cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccch
Confidence            89999999999999999988743 36778888888899999999999999999988766 77788887777776665   


Q ss_pred             ---hHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhC
Q 010994          393 ---TERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTV--IPMNRQMYHAFIKANIRN  464 (496)
Q Consensus       393 ---~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~  464 (496)
                         +++|++.+.++++       ..| +...|..+...+.. ...+++.+.++...+.  ...+...+..++..|...
T Consensus       199 ~~~~~~ai~~~~~al~-------~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~  268 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIK-------LVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM  268 (315)
T ss_dssp             HHHHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHHHH-------hCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence               5789999999887       445 55666666655544 4467777877766653  334566777777777653

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=3.6e-10  Score=99.13  Aligned_cols=196  Identities=8%  Similarity=0.008  Sum_probs=165.9

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCcccHHHHHHH
Q 010994          273 IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLG-EHEEAEKVLKEWELSGNSYDTRIPNAVIIG  351 (496)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  351 (496)
                      .+++.+...+.+.+.+++|+++++.+....+ .+...|+....++...| ++++|...++...+.... +..+|..+...
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~  121 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence            4566777788899999999999999998876 66678888888888876 599999999999887533 67889999999


Q ss_pred             HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhcc
Q 010994          352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDE  430 (496)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~  430 (496)
                      +.+.|++++|+..++++.+..+. +...|..+...+...|++++|++.++++++       +.| +...|+.+...+.+.
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~-------~~p~n~~a~~~r~~~l~~~  193 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK-------EDVRNNSVWNQRYFVISNT  193 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHT
T ss_pred             HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHH-------HCCccHHHHHHHHHHHHHc
Confidence            99999999999999999998766 899999999999999999999999999998       455 566777666665554


Q ss_pred             CC------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC-CcHHHHHHHHHhC
Q 010994          431 GS------VQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG-KGVDELLDSMKAD  478 (496)
Q Consensus       431 g~------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~a~~~~~~m~~~  478 (496)
                      +.      +++|...+....+..|.+...|+.+...+...| +++.+.++...+.
T Consensus       194 ~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         194 TGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL  248 (315)
T ss_dssp             TCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH
T ss_pred             cccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            44      678888888888888999999999988888777 7888888887763

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=2.1e-09  Score=96.22  Aligned_cols=277  Identities=9%  Similarity=0.002  Sum_probs=125.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----hhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCC-CCChhhHHHHH
Q 010994          134 YGALLNCYVRQRQTDKALSHFRKMKEMGIALS----TLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNI-FPDNFSYRICI  208 (496)
Q Consensus       134 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li  208 (496)
                      .......+...|++++|+.++++..+.....+    ...++.+..++...|++++|...|++..+... .++..      
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~------   88 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH------   88 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchH------
Confidence            33344556666777777777766655421111    12445555566666666666666665543210 01100      


Q ss_pred             HHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcc---cC----ccchHHHHHHH
Q 010994          209 NSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLE---QK----DGIGYNFLISL  281 (496)
Q Consensus       209 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~----~~~~~~~l~~~  281 (496)
                                                .....+..+...+...|++..+...+.+......   .+    ....+..+...
T Consensus        89 --------------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~  142 (366)
T d1hz4a_          89 --------------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQL  142 (366)
T ss_dssp             --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHH
T ss_pred             --------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHH
Confidence                                      0111222333344444444444444444322110   00    01123333444


Q ss_pred             HHhcCCHHHHHHHHHHHHhhcCCCC----chhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CcccHHHHHHH
Q 010994          282 YASLGNKSEVLRLWDLEKTACKRYI----NRDYITMLEALMKLGEHEEAEKVLKEWELSGNSY------DTRIPNAVIIG  351 (496)
Q Consensus       282 ~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~  351 (496)
                      +...|+++.+...+...........    ...+......+...++...+...+..........      ....+......
T Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T d1hz4a_         143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY  222 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            5555555555555554433322111    1222333344444555555555544443211000      01123334444


Q ss_pred             HHhcCchhHHHHHHHHHHhcCCCCC---HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHH
Q 010994          352 YCNNGLVQNAEAILEDLVEKGKATT---PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKL  427 (496)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~  427 (496)
                      +...|+++.|...+....+.....+   ...+..+...+...|++++|...+++++..... .+..|+ ...+..+..++
T Consensus       223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~la~~~  301 (366)
T d1hz4a_         223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARS-LRLMSDLNRNLLLLNQLY  301 (366)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh-cccChHHHHHHHHHHHHH
Confidence            5556666666666655544322211   223444556666666666666666665542111 122232 23455555666


Q ss_pred             hccCCHHHHHHHHHHH
Q 010994          428 GDEGSVQDVEAFVAAL  443 (496)
Q Consensus       428 ~~~g~~~~a~~~~~~~  443 (496)
                      ...|++++|.+.+++.
T Consensus       302 ~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         302 WQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             HHHTCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHH
Confidence            6666666666666644

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2.8e-09  Score=95.46  Aligned_cols=279  Identities=11%  Similarity=0.016  Sum_probs=155.4

Q ss_pred             cchhhhhhhHHHhhcCHHHHHHHHHhchhcCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----h
Q 010994           98 PCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKT------YQTYGALLNCYVRQRQTDKALSHFRKMKEMGIA-LS----T  166 (496)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~  166 (496)
                      +.........+...|++++|+.++++.....|+      ..++..+..++...|++++|...|++..+.... ++    .
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   91 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYAL   91 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHH
Confidence            334444567778999999999999998877653      346777889999999999999999987653111 11    2


Q ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHH
Q 010994          167 LTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHF  246 (496)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~  246 (496)
                      .++..+...+...|++..+...+.+....                            ..... ..........+..+...
T Consensus        92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~----------------------------~~~~~-~~~~~~~~~~~~~la~~  142 (366)
T d1hz4a_          92 WSLIQQSEILFAQGFLQTAWETQEKAFQL----------------------------INEQH-LEQLPMHEFLVRIRAQL  142 (366)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------------HHHTT-CTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------------hHhcc-cchhhHHHHHHHHHHHH
Confidence            33455556666667777666666654331                            00000 00000011122233344


Q ss_pred             HHhcCChHHHHHHHHHHHHhccc----CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC------chhHHHHHHH
Q 010994          247 YIKANLIDKASDVLKKAEERLEQ----KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI------NRDYITMLEA  316 (496)
Q Consensus       247 ~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~  316 (496)
                      +...|+++.+...+.........    ....++......+...++...+...+...........      ...+......
T Consensus       143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  222 (366)
T d1hz4a_         143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY  222 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred             HHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            44445555555444444332111    1112233334444455555555555443332221111      1123344555


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCC---cccHHHHHHHHHhcCchhHHHHHHHHHHh----cCCCCC-HhHHHHHHHHHH
Q 010994          317 LMKLGEHEEAEKVLKEWELSGNSYD---TRIPNAVIIGYCNNGLVQNAEAILEDLVE----KGKATT-PNSWAVVAAGYF  388 (496)
Q Consensus       317 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~p~-~~~~~~l~~~~~  388 (496)
                      +...|+.+.|...+....+.....+   ...+..+...+...|++++|...+++...    .+..|+ ...+..+...|.
T Consensus       223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~  302 (366)
T d1hz4a_         223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW  302 (366)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence            5666777777776666554322211   12234456667777777777777776653    222222 346677778888


Q ss_pred             hcCChHHHHHHHHHHHH
Q 010994          389 DAGKTERGFQCMKAALS  405 (496)
Q Consensus       389 ~~~~~~~a~~~~~~~~~  405 (496)
                      ..|++++|.+.++++++
T Consensus       303 ~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         303 QAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            88888888888888766

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.5e-09  Score=95.02  Aligned_cols=192  Identities=11%  Similarity=0.041  Sum_probs=139.0

Q ss_pred             CChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHH
Q 010994          251 NLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVL  330 (496)
Q Consensus       251 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  330 (496)
                      +..++|..+|++..+..++.+...|...+......|+++.|..+|+.+....+......|...+..+.+.|+.+.|..+|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34567778888877654444556677778888888888888888888777655333456778888888888888888888


Q ss_pred             HHHHhcCCCCCcccHHHHHHH-HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhc
Q 010994          331 KEWELSGNSYDTRIPNAVIIG-YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVE  409 (496)
Q Consensus       331 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  409 (496)
                      +.+.+.+.. +...|...... +...|+.+.|..+|+.+.+..+. +...|...+..+...|+.+.|..+|++++.    
T Consensus       158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~----  231 (308)
T d2onda1         158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLT----  231 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHH----
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHH----
Confidence            888776432 33344333332 33467888899999988876443 677888888888899999999999999887    


Q ss_pred             CCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          410 GKGWKPD--PKVITSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       410 ~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                      ..+..|+  ...|...+..-...|+.+.+..+.+++.+..|
T Consensus       232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~  272 (308)
T d2onda1         232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            1223443  35677777777778999999988888777554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.21  E-value=3.1e-09  Score=93.03  Aligned_cols=187  Identities=13%  Similarity=0.085  Sum_probs=105.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHH
Q 010994          146 QTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILR  225 (496)
Q Consensus       146 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~  225 (496)
                      ..++|..+|++..+...+.+...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+++.|.++|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            34666667766665434445556666666666777777777777776654322223456666666666677777777776


Q ss_pred             HhhcCCCCCCCHHHHHHHHHH-HHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCC
Q 010994          226 EMESQPHIVLDWSTYASAAHF-YIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKR  304 (496)
Q Consensus       226 ~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  304 (496)
                      .+. +... .+...|...... +...|+.+.|..+|+.+....+ .+...|...+....+.|+++.|..+|+......+.
T Consensus       159 ~al-~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p-~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         159 KAR-EDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHH-TSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHH-HhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            665 3333 333333333322 2334666666666666655432 34555666666666666666666666665554431


Q ss_pred             -CC--chhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010994          305 -YI--NRDYITMLEALMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       305 -~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  335 (496)
                       |.  ...|...+.--...|+.+.+..+++++.+
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence             11  12344445544555666666666665544

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=4.3e-10  Score=95.99  Aligned_cols=147  Identities=12%  Similarity=-0.027  Sum_probs=88.3

Q ss_pred             hhHHHHHHHHHHhCCCCCCCc----chhhhhhhHHHhhcCHHHHHHHHHhchhcCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010994           78 FSQALEVSDWMNRKGICVFAP----CDHAVQLDLIGRVHGFLSAESYFSNLKDDEK-TYQTYGALLNCYVRQRQTDKALS  152 (496)
Q Consensus        78 ~~~a~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~  152 (496)
                      .+.++.-+++......  ..+    ..+..+...+.+.|++++|+..|++.....| ++.+|+.+..++.+.|++++|+.
T Consensus        15 ~e~al~~~~e~l~~~~--~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          15 QEVILARMEQILASRA--LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhh--cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhh
Confidence            3455555666655431  122    1233334566677777777777777777766 47777777777777777777777


Q ss_pred             HHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhh
Q 010994          153 HFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREME  228 (496)
Q Consensus       153 ~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~  228 (496)
                      .|++..+.... +..+|..+..++...|++++|...|+...+... .+......+..++.+.+..+.+..+.....
T Consensus        93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (259)
T d1xnfa_          93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  166 (259)
T ss_dssp             HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence            77777765322 456677777777777777777777777766432 233333333344444444444444444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=1.4e-10  Score=103.13  Aligned_cols=234  Identities=8%  Similarity=-0.048  Sum_probs=151.2

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCC--CCcHHHHHHHHHHCCCCCChhhHH-HHHHHHhhcCChHH
Q 010994          143 RQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQ--YEKVPDVLTEMKAKNIFPDNFSYR-ICINSYGARSDLEG  219 (496)
Q Consensus       143 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~  219 (496)
                      ..|++++|+..++...+.+.+ +...|..+..++...++  +++|...++++.+... ++...+. .....+...+..+.
T Consensus        85 ~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHH
Confidence            344567777778777665332 66667777666666554  5677777777776532 2344443 34456667788888


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010994          220 MEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEK  299 (496)
Q Consensus       220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  299 (496)
                      |+..++.+. ..++ -+...|+.+...+.+.|++++|...+....+..+  +   .......+...+..+++...+....
T Consensus       163 Al~~~~~~i-~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~---~~~~~~~~~~l~~~~~a~~~~~~~l  235 (334)
T d1dcea1         163 ELAFTDSLI-TRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLL--K---ELELVQNAFFTDPNDQSAWFYHRWL  235 (334)
T ss_dssp             HHHHHHTTT-TTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHH--H---HHHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHH--H---HHHHHHHHHHhcchhHHHHHHHHHH
Confidence            888888887 5555 5677788888888888888777666554433221  1   1122333455566667777777665


Q ss_pred             hhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhH
Q 010994          300 TACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNS  379 (496)
Q Consensus       300 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~  379 (496)
                      ...+ ++...+..+...+...|+..+|...+.+..+..+ .+...+..+...|.+.|+.++|.+.++++.+.++. +..-
T Consensus       236 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y  312 (334)
T d1dcea1         236 LGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAY  312 (334)
T ss_dssp             HSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHH
T ss_pred             HhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHH
Confidence            5544 4455566667777777888888888887766532 24556677777888888888888888888876432 3445


Q ss_pred             HHHHHHHHH
Q 010994          380 WAVVAAGYF  388 (496)
Q Consensus       380 ~~~l~~~~~  388 (496)
                      |..+...+.
T Consensus       313 ~~~L~~~~~  321 (334)
T d1dcea1         313 LDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            555555444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=3.1e-10  Score=100.94  Aligned_cols=231  Identities=7%  Similarity=-0.075  Sum_probs=118.9

Q ss_pred             CChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHhcccCccchHH-HHHHHHHhcCCHHHH
Q 010994          215 SDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKAN--LIDKASDVLKKAEERLEQKDGIGYN-FLISLYASLGNKSEV  291 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~~~~~~a  291 (496)
                      |++++|+.+++... ..++ .+...+..+..++...+  ++++|...+.++....+ ++...+. .....+...+.+++|
T Consensus        87 ~~~~~al~~~~~~l-~~~p-k~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          87 ALVKAELGFLESCL-RVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHH-HhCC-CcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHH
Confidence            34455555555554 3222 34444444444444443  35566666666555432 2333332 333444555666666


Q ss_pred             HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 010994          292 LRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK  371 (496)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (496)
                      +..++......+ .+...|..+..++.+.|++++|...+....+.  .|+   .......+...+..+++...+......
T Consensus       164 l~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~  237 (334)
T d1dcea1         164 LAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG  237 (334)
T ss_dssp             HHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh
Confidence            666665555443 44455555666666666655554333322221  000   012223334445555666666665554


Q ss_pred             CCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCC
Q 010994          372 GKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMN  450 (496)
Q Consensus       372 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  450 (496)
                      ... +...+..++..+...|+.++|+..+.+...       ..| +...+..+..++...|++++|.+.++.+.+..|.+
T Consensus       238 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~  309 (334)
T d1dcea1         238 RAE-PLFRCELSVEKSTVLQSELESCKELQELEP-------ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR  309 (334)
T ss_dssp             CCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCT-------TCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred             Ccc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHh-------hCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc
Confidence            332 444455555666666666677666666643       333 23455566666667777777777777666655555


Q ss_pred             HHHHHHHHHHHH
Q 010994          451 RQMYHAFIKANI  462 (496)
Q Consensus       451 ~~~~~~l~~~~~  462 (496)
                      ...|+.|...+.
T Consensus       310 ~~y~~~L~~~~~  321 (334)
T d1dcea1         310 AAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            555665544443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1.8e-09  Score=92.07  Aligned_cols=228  Identities=12%  Similarity=-0.023  Sum_probs=137.1

Q ss_pred             CChHHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHH
Q 010994          215 SDLEGMEIILREMESQPHIVL--DWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVL  292 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  292 (496)
                      .+.+.++.-+++........+  ...+|..+..+|.+.|++++|...|++.....+ .+..+|..+..++...|++++|+
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p-~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC-CCHHHHhhhchHHHHHHHHHHhh
Confidence            345666667777762222211  234566677888888888888888888877543 56677888888888888888888


Q ss_pred             HHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcC
Q 010994          293 RLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKG  372 (496)
Q Consensus       293 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  372 (496)
                      ..|+......+ .+...+..+..++...|++++|...++...+..+ .+......+...+.+.+..+.+..+........
T Consensus        92 ~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (259)
T d1xnfa_          92 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD  169 (259)
T ss_dssp             HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC
T ss_pred             hhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc
Confidence            88888777665 4556777788888888888888888888877642 233333333444455555555555555554432


Q ss_pred             CCCCHhHHHHHHHHHHhcCC----hHHHHHHHHHHHHhhhcCCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHHHhcC
Q 010994          373 KATTPNSWAVVAAGYFDAGK----TERGFQCMKAALSVYVEGKGWKPDP-KVITSILSKLGDEGSVQDVEAFVAALRTVI  447 (496)
Q Consensus       373 ~~p~~~~~~~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  447 (496)
                      .  +...++ ++..+.....    .+.+...+.....       ..|+. .++..+...+...|++++|...|+......
T Consensus       170 ~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         170 K--EQWGWN-IVEFYLGNISEQTLMERLKADATDNTS-------LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             C--CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH-------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             h--hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh-------cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            2  222222 2222222111    1122222221111       12222 355566777788888888888888777665


Q ss_pred             CCCHHHHH
Q 010994          448 PMNRQMYH  455 (496)
Q Consensus       448 ~~~~~~~~  455 (496)
                      |.+..-|.
T Consensus       240 p~~~~~~~  247 (259)
T d1xnfa_         240 VHNFVEHR  247 (259)
T ss_dssp             CTTCHHHH
T ss_pred             CCCHHHHH
Confidence            55544443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=2.9e-07  Score=66.83  Aligned_cols=105  Identities=9%  Similarity=-0.038  Sum_probs=70.4

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHh
Q 010994          349 IIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLG  428 (496)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~  428 (496)
                      ...+.+.|++++|+..|++.++..+. +...|..+..+|...|++++|+..+.++++      --+.+...|..+..++.
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVD------LKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHH------hccchhhHHHHHHHHHH
Confidence            44566677777777777777766544 666777777777777777777777777776      22335566677777777


Q ss_pred             ccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          429 DEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       429 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                      ..|++++|...++...+..|.++..+..+...
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l  114 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM  114 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            77777777777777766666666665555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.66  E-value=1e-06  Score=75.78  Aligned_cols=197  Identities=11%  Similarity=0.006  Sum_probs=117.6

Q ss_pred             HHHHHhhcCChHHHHHHHHHhhc---C-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccC-----ccchHHH
Q 010994          207 CINSYGARSDLEGMEIILREMES---Q-PHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQK-----DGIGYNF  277 (496)
Q Consensus       207 li~~~~~~~~~~~a~~~~~~~~~---~-~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~  277 (496)
                      ....|...|++++|.+.|.+...   . .+...-..+|..+..+|.+.|++++|.+.+++........     ...++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            34566677777777777766541   1 1111223567777788888888888888887765432211     1244555


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHHhhcCC---C--CchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcc------cH
Q 010994          278 LISLYAS-LGNKSEVLRLWDLEKTACKR---Y--INRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTR------IP  345 (496)
Q Consensus       278 l~~~~~~-~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~  345 (496)
                      +...|.. .|++++|+..++........   +  ...++..+...+...|++++|...++++..........      .+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            6666644 58888888888765543221   1  12346677888888888888888888877653222111      12


Q ss_pred             HHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC---HhHHHHHHHHHHh--cCChHHHHHHHHHH
Q 010994          346 NAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT---PNSWAVVAAGYFD--AGKTERGFQCMKAA  403 (496)
Q Consensus       346 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~---~~~~~~l~~~~~~--~~~~~~a~~~~~~~  403 (496)
                      ...+..+...|+++.|...+++..+..+. ++   ......++.++..  .+.+++|+..|+++
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~  266 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF  266 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            33444566778888888888887765422 11   2244556666554  23466777766554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=1.4e-06  Score=69.45  Aligned_cols=84  Identities=10%  Similarity=0.029  Sum_probs=44.1

Q ss_pred             HHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHH
Q 010994          210 SYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKS  289 (496)
Q Consensus       210 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~  289 (496)
                      .+...|+++.|++.|+++.     +|+..+|..+..+|...|++++|++.|++..+..+ .+...|..+..++.+.|+++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp-~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK-HLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhccHH
Confidence            3445555555555555432     13444555555555555555555555555554432 33445555555555555555


Q ss_pred             HHHHHHHHHH
Q 010994          290 EVLRLWDLEK  299 (496)
Q Consensus       290 ~a~~~~~~~~  299 (496)
                      +|+..|+...
T Consensus        88 ~A~~~~~kAl   97 (192)
T d1hh8a_          88 LAIKDLKEAL   97 (192)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=2.8e-06  Score=72.92  Aligned_cols=234  Identities=12%  Similarity=0.063  Sum_probs=138.2

Q ss_pred             CcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 010994          183 EKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKK  262 (496)
Q Consensus       183 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  262 (496)
                      .++.+++++..+.+ +|....+. ++. -...+++++|..+|.+                ....|...|++++|.+.|.+
T Consensus         2 ~~~~~~l~~aek~~-~~~~~~~~-~~~-~~~~~~~~~Aa~~y~~----------------aa~~y~~~~~~~~A~~~y~k   62 (290)
T d1qqea_           2 SDPVELLKRAEKKG-VPSSGFMK-LFS-GSDSYKFEEAADLCVQ----------------AATIYRLRKELNLAGDSFLK   62 (290)
T ss_dssp             CCHHHHHHHHHHHS-SCCCTHHH-HHS-CCSHHHHHHHHHHHHH----------------HHHHHHHTTCTHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhc-CcchhHHH-Hhc-CCccccHHHHHHHHHH----------------HHHHHHHCcCHHHHHHHHHH
Confidence            35666777766553 23332222 111 1222345666655544                45678889999999999998


Q ss_pred             HHHhccc-----CccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCC-----chhHHHHHHHHH-hcCCHHHHHHHHH
Q 010994          263 AEERLEQ-----KDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYI-----NRDYITMLEALM-KLGEHEEAEKVLK  331 (496)
Q Consensus       263 m~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~-~~~~~~~a~~~~~  331 (496)
                      ..+....     .-..+|..+..+|.+.|++++|...++..........     ...+..+...|. ..|++++|...++
T Consensus        63 A~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~  142 (290)
T d1qqea_          63 AADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYE  142 (290)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHH
Confidence            8653211     1235788889999999999999999886654332111     234555565664 3588888888887


Q ss_pred             HHHhc----CCCC-CcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCH------hHHHHHHHHHHhcCChHHHHHHH
Q 010994          332 EWELS----GNSY-DTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTP------NSWAVVAAGYFDAGKTERGFQCM  400 (496)
Q Consensus       332 ~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~  400 (496)
                      +..+.    +..+ -..++..+...|...|++++|...|+++.........      ..+...+..+...|+++.|...+
T Consensus       143 ~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~  222 (290)
T d1qqea_         143 LAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTL  222 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            76532    1111 1234666777788888888888888887764322111      12344455666778888888888


Q ss_pred             HHHHHhhhcCCCCCCC------HHHHHHHHHHHhc--cCCHHHHHHHHHH
Q 010994          401 KAALSVYVEGKGWKPD------PKVITSILSKLGD--EGSVQDVEAFVAA  442 (496)
Q Consensus       401 ~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~--~g~~~~a~~~~~~  442 (496)
                      +++.+       +.|+      ......++.++..  .+.+++|...|+.
T Consensus       223 ~~~~~-------~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~  265 (290)
T d1qqea_         223 QEGQS-------EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN  265 (290)
T ss_dssp             HGGGC-------C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred             HHHHH-------hCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            77764       2221      2234455555543  2345566555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.9e-06  Score=68.71  Aligned_cols=87  Identities=14%  Similarity=0.032  Sum_probs=54.5

Q ss_pred             HHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC
Q 010994          173 MCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANL  252 (496)
Q Consensus       173 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  252 (496)
                      ...+...|++++|++.|.++    ..|+..+|..+..++...|++++|++.|++.. +.++ .+...|..+..+|.+.|+
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl-~ldp-~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSI-NRDK-HLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHH-HHhh-hhhhhHHHHHHHHHhhcc
Confidence            44455666677776666543    24555666666666667777777777776666 4443 455666666666667777


Q ss_pred             hHHHHHHHHHHHH
Q 010994          253 IDKASDVLKKAEE  265 (496)
Q Consensus       253 ~~~a~~~~~~m~~  265 (496)
                      +++|...|++...
T Consensus        86 ~~~A~~~~~kAl~   98 (192)
T d1hh8a_          86 YDLAIKDLKEALI   98 (192)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666666544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=7.1e-07  Score=68.93  Aligned_cols=104  Identities=10%  Similarity=0.011  Sum_probs=60.5

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHH
Q 010994          349 IIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKL  427 (496)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~  427 (496)
                      ...|.+.|++++|+..|++.++.++. +...|..+...|...|++++|++.|+++++       +.| +...|..+..++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~-------~~p~~~~a~~~~g~~~   88 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIE-------LDKKYIKGYYRRAASN   88 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHH-------HcccchHHHHHHHHHH
Confidence            33455666666666666666665543 555666666666666666666666666665       233 335566666666


Q ss_pred             hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          428 GDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       428 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                      ...|++++|...+++.....|.+...+..+..+
T Consensus        89 ~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~  121 (159)
T d1a17a_          89 MALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  121 (159)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            666666666666666655555555555444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=1e-06  Score=63.75  Aligned_cols=91  Identities=13%  Similarity=0.018  Sum_probs=71.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC
Q 010994          313 MLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK  392 (496)
Q Consensus       313 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~  392 (496)
                      -...+.+.|++++|...|.+..+.. +.+...|..+..+|...|++++|+..+.+..+.++. +...|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccC
Confidence            3556777888888888888887764 335667788888888888888888888888877655 77788888888888888


Q ss_pred             hHHHHHHHHHHHH
Q 010994          393 TERGFQCMKAALS  405 (496)
Q Consensus       393 ~~~a~~~~~~~~~  405 (496)
                      +++|+..|+++++
T Consensus        87 ~~~A~~~~~~a~~   99 (117)
T d1elwa_          87 FEEAKRTYEEGLK   99 (117)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888888876

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=3.4e-07  Score=74.05  Aligned_cols=99  Identities=9%  Similarity=-0.042  Sum_probs=80.2

Q ss_pred             CCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHH
Q 010994          305 YINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVA  384 (496)
Q Consensus       305 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~  384 (496)
                      |+...+......+.+.|++++|...|.+..+.. +.+...|..+..+|.+.|++++|+..|++.++..+. +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            555666777888888889999998888888764 336677888888888888888888888888876544 677888888


Q ss_pred             HHHHhcCChHHHHHHHHHHHH
Q 010994          385 AGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       385 ~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .+|...|++++|+..|+++++
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            888888888888888888876

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.8e-06  Score=64.61  Aligned_cols=90  Identities=9%  Similarity=-0.144  Sum_probs=44.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhH
Q 010994          281 LYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQN  360 (496)
Q Consensus       281 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  360 (496)
                      .|.+.|++++|+..|+......+ .+...|..+..+|...|++++|...|+.+.+.. +-+...|..+..+|...|++++
T Consensus        19 ~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e   96 (159)
T d1a17a_          19 DYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA   96 (159)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence            44455555555555554444433 344445555555555555555555555555442 1133445555555555555555


Q ss_pred             HHHHHHHHHhcC
Q 010994          361 AEAILEDLVEKG  372 (496)
Q Consensus       361 a~~~~~~~~~~~  372 (496)
                      |...+++.....
T Consensus        97 A~~~~~~a~~~~  108 (159)
T d1a17a_          97 ALRDYETVVKVK  108 (159)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcC
Confidence            555555555443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.39  E-value=0.00048  Score=59.01  Aligned_cols=284  Identities=10%  Similarity=0.025  Sum_probs=148.9

Q ss_pred             CChhhHHHHHHHHHhccChhHHHHHHHHHHhCCCCCCCcchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHH
Q 010994           60 VRVGELQRIIRDLRKRKRFSQALEVSDWMNRKGICVFAPCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLN  139 (496)
Q Consensus        60 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~  139 (496)
                      |+......+.+.|-+.|.++.|..+|..+..          +..++..+.+.++++.|...+.+..    +..+|..+..
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d----------~~rl~~~~v~l~~~~~avd~~~k~~----~~~~~k~~~~   77 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN----------FGRLASTLVHLGEYQAAVDGARKAN----STRTWKEVCF   77 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC----------HHHHHHHHHTTTCHHHHHHHHHHHT----CHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC----------HHHHHHHHHhhccHHHHHHHHHHcC----CHHHHHHHHH
Confidence            4445556677777788888888888875433          3456677778888888877776442    4678888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHhcCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHH
Q 010994          140 CYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSKTGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEG  219 (496)
Q Consensus       140 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~  219 (496)
                      .+.+.....-|     .+...+...+......++..|-..|.+++...+++..... -.++...++.++..|++.+. +.
T Consensus        78 ~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k  150 (336)
T d1b89a_          78 ACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK  150 (336)
T ss_dssp             HHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH
T ss_pred             HHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH
Confidence            88877766543     2223334446666677888888888888888888876543 24566677788888877643 33


Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------cccCccchHHHHHHHHHhcCCHHHH
Q 010994          220 MEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEER--------LEQKDGIGYNFLISLYASLGNKSEV  291 (496)
Q Consensus       220 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a  291 (496)
                      ..+.++...   + ..|..-   ++..|-+.+-+.++.-++.++...        .-.++..-...++..+.+..+.+..
T Consensus       151 l~e~l~~~s---~-~y~~~k---~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~  223 (336)
T d1b89a_         151 MREHLELFW---S-RVNIPK---VLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELY  223 (336)
T ss_dssp             HHHHHHHHS---T-TSCHHH---HHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHH
T ss_pred             HHHHHHhcc---c-cCCHHH---HHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHH
Confidence            333333331   1 122222   344444444444444444332110        0013333334444445555555444


Q ss_pred             HHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhc
Q 010994          292 LRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEK  371 (496)
Q Consensus       292 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  371 (496)
                      .++........    +...+.++......-+.                      ..++...-+.+++......++...+.
T Consensus       224 ~~~i~~yL~~~----p~~i~~lL~~v~~~~d~----------------------~r~V~~~~k~~~l~li~p~Le~v~~~  277 (336)
T d1b89a_         224 YRAIQFYLEFK----PLLLNDLLMVLSPRLDH----------------------TRAVNYFSKVKQLPLVKPYLRSVQNH  277 (336)
T ss_dssp             HHHHHHHHHHC----GGGHHHHHHHHGGGCCH----------------------HHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred             HHHHHHHHHcC----HHHHHHHHHHhccCCCH----------------------HHHHHHHHhcCCcHHHHHHHHHHHHc
Confidence            44444332211    12222222222222222                      33455555566666666777666655


Q ss_pred             CCCCCHhHHHHHHHHHHhcCChHHHHHHH
Q 010994          372 GKATTPNSWAVVAAGYFDAGKTERGFQCM  400 (496)
Q Consensus       372 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  400 (496)
                      |   +....+++...|...++++.-.+..
T Consensus       278 n---~~~vn~al~~lyie~~d~~~l~~~i  303 (336)
T d1b89a_         278 N---NKSVNESLNNLFITEEDYQALRTSI  303 (336)
T ss_dssp             C---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             C---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence            4   4467888888888888865543333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.38  E-value=2.3e-06  Score=61.28  Aligned_cols=89  Identities=13%  Similarity=0.124  Sum_probs=56.6

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILS  425 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~  425 (496)
                      .+...+.+.|++++|...|++.++.++. +...|..+...+.+.|++++|+..|+++++       +.| +...+..+..
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~-------~~p~~~~a~~~la~   92 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARM-------LDPKDIAVHAALAV   92 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccc-------cccccccchHHHHH
Confidence            3445566666677777766666665544 566666666666667777777777766665       233 3556666666


Q ss_pred             HHhccCCHHHHHHHHHHH
Q 010994          426 KLGDEGSVQDVEAFVAAL  443 (496)
Q Consensus       426 ~~~~~g~~~~a~~~~~~~  443 (496)
                      .|...|++++|.+.+++.
T Consensus        93 ~y~~~g~~~~A~~~l~~~  110 (112)
T d1hxia_          93 SHTNEHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            666666777666666643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=2.9e-06  Score=68.26  Aligned_cols=99  Identities=9%  Similarity=-0.047  Sum_probs=57.8

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHH
Q 010994          235 LDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITML  314 (496)
Q Consensus       235 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  314 (496)
                      |+...+......|.+.|++++|+..|++.....+ .+...|..+..+|.+.|++++|+..|+......+ .+...|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence            4445555555666666666666666666555433 4455566666666666666666666665554433 3345556666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 010994          315 EALMKLGEHEEAEKVLKEWEL  335 (496)
Q Consensus       315 ~~~~~~~~~~~a~~~~~~~~~  335 (496)
                      .+|.+.|++++|...|+.+.+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            666666666666666665554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.36  E-value=8.2e-05  Score=62.47  Aligned_cols=93  Identities=11%  Similarity=0.032  Sum_probs=52.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh----cCCCCcHHHHHHHHHHCCCCCChhhHH
Q 010994          130 TYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK----TGQYEKVPDVLTEMKAKNIFPDNFSYR  205 (496)
Q Consensus       130 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~  205 (496)
                      |+..+..|...+.+.+++++|++.|++..+.|   |...+..|...|..    ..+...|...+......+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            45566666777777778888888887777665   55556556666654    334555666666655543   222233


Q ss_pred             HHHHHHhh----cCChHHHHHHHHHhh
Q 010994          206 ICINSYGA----RSDLEGMEIILREME  228 (496)
Q Consensus       206 ~li~~~~~----~~~~~~a~~~~~~~~  228 (496)
                      .+...+..    ..+.+.|...++...
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~  101 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKAC  101 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhh
Confidence            33222221    344555555555554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.33  E-value=2.8e-06  Score=60.81  Aligned_cols=92  Identities=12%  Similarity=0.003  Sum_probs=63.6

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA  390 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  390 (496)
                      ......+.+.|++++|...+++..+..+. +...|..+..++.+.|++++|+..|++..+.++. +...|..+...|...
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~   97 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHC
Confidence            34555666777777777777777766422 5666677777777777777777777777776544 566777777777777


Q ss_pred             CChHHHHHHHHHHH
Q 010994          391 GKTERGFQCMKAAL  404 (496)
Q Consensus       391 ~~~~~a~~~~~~~~  404 (496)
                      |++++|++.+++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            77777777777653

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=3.6e-06  Score=61.01  Aligned_cols=100  Identities=12%  Similarity=0.027  Sum_probs=55.8

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCC---hHHHHHHHHHHHHhhhcCCCCCCCH---HHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGK---TERGFQCMKAALSVYVEGKGWKPDP---KVI  420 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~p~~---~~~  420 (496)
                      .++..+...+++++|.+.|++....++. +..++..+..++.+.++   +++|+.++++++.       ..|+.   ..+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~-------~~~~~~~~~~~   75 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLP-------KGSKEEQRDYV   75 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTT-------TSCHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHh-------ccCCchHHHHH
Confidence            3455555666666666666666665443 55566666666655433   3346666666554       22222   245


Q ss_pred             HHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994          421 TSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY  454 (496)
Q Consensus       421 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  454 (496)
                      ..+..+|.+.|++++|.+.|+++.+..|.+....
T Consensus        76 ~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~  109 (122)
T d1nzna_          76 FYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK  109 (122)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHH
Confidence            5556666666666666666666665555555443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.29  E-value=0.00038  Score=58.20  Aligned_cols=95  Identities=16%  Similarity=0.100  Sum_probs=46.1

Q ss_pred             cchhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhHHHHHH
Q 010994           98 PCDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVR----QRQTDKALSHFRKMKEMGIALSTLTYNDIM  173 (496)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~  173 (496)
                      |..+..+...+.+.+++++|+++|++..+.+ |...+..|...|..    ..+...|...++.....+   +......+.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g-~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK-ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence            3334444444555566666666666655432 34444445555544    445666666666555543   333333333


Q ss_pred             HHHHh----cCCCCcHHHHHHHHHHCC
Q 010994          174 CLYSK----TGQYEKVPDVLTEMKAKN  196 (496)
Q Consensus       174 ~~~~~----~~~~~~a~~~~~~m~~~~  196 (496)
                      ..+..    ..+.+.|...++.....|
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g  104 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK  104 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh
Confidence            33332    223344555555554443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.6e-05  Score=61.66  Aligned_cols=129  Identities=11%  Similarity=-0.038  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF  388 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  388 (496)
                      .+......+.+.|++++|...|.+..+....... ..             +.-......+       -..+|+.+..+|.
T Consensus        15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~-~~-------------~~~~~~~~~~-------~~~~~~nla~~y~   73 (170)
T d1p5qa1          15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-FS-------------NEEAQKAQAL-------RLASHLNLAMCHL   73 (170)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-CC-------------SHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccc-cc-------------hHHHhhhchh-------HHHHHHHHHHHHH
Confidence            3445556677777777777777777654211100 00             0000111111       1236777889999


Q ss_pred             hcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCC
Q 010994          389 DAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNG  465 (496)
Q Consensus       389 ~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  465 (496)
                      +.|++++|+..+++++.       +.| +...+..+..++...|++++|...|+...+..|.+..+...+..+..+.+
T Consensus        74 k~~~~~~A~~~~~~al~-------~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          74 KLQAFSAAIESCNKALE-------LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             hhhhcccccchhhhhhh-------ccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998       455 67889999999999999999999999998888888888887777765554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=2.6e-06  Score=61.84  Aligned_cols=94  Identities=16%  Similarity=0.221  Sum_probs=65.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcC---chhHHHHHHHHHHhcCCCCCH-hHHHHHHHH
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNG---LVQNAEAILEDLVEKGKATTP-NSWAVVAAG  386 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~  386 (496)
                      ..+++.+...+++++|.+.|+.....+ +.+..++..+..++.+.+   ++++|+.+|+++...+..|+. .+|..+..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            346667777778888888888877764 235566667777776544   445688888887776544332 366777888


Q ss_pred             HHhcCChHHHHHHHHHHHH
Q 010994          387 YFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       387 ~~~~~~~~~a~~~~~~~~~  405 (496)
                      |.+.|++++|++.|+++++
T Consensus        82 y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHH
Confidence            8888888888888888876

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.20  E-value=0.0013  Score=56.22  Aligned_cols=141  Identities=18%  Similarity=0.168  Sum_probs=92.8

Q ss_pred             chhhhhhhHHHhhcCHHHHHHHHHhchhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhHHHHHHHHHHh
Q 010994           99 CDHAVQLDLIGRVHGFLSAESYFSNLKDDEKTYQTYGALLNCYVRQRQTDKALSHFRKMKEMGIALSTLTYNDIMCLYSK  178 (496)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~  178 (496)
                      .....+.+.|-+.|.++.|..+|..+..       |..++..+.+.++++.|.+++...  .    +..+|..+...+.+
T Consensus        15 ~d~~~i~~~c~~~~lye~A~~lY~~~~d-------~~rl~~~~v~l~~~~~avd~~~k~--~----~~~~~k~~~~~l~~   81 (336)
T d1b89a_          15 AHIQQVGDRCYDEKMYDAAKLLYNNVSN-------FGRLASTLVHLGEYQAAVDGARKA--N----STRTWKEVCFACVD   81 (336)
T ss_dssp             --------------CTTTHHHHHHHTTC-------HHHHHHHHHTTTCHHHHHHHHHHH--T----CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHhCCC-------HHHHHHHHHhhccHHHHHHHHHHc--C----CHHHHHHHHHHHHh
Confidence            3444567788899999999999976553       677888999999999998887643  2    67789889988887


Q ss_pred             cCCCCcHHHHHHHHHHCCCCCChhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010994          179 TGQYEKVPDVLTEMKAKNIFPDNFSYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASD  258 (496)
Q Consensus       179 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  258 (496)
                      .....-+     .+.......+......++..|-..|.+++...+++... ... ..+...++.++..|++.+ .++..+
T Consensus        82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~-~~~-~~~~~~~~~L~~lyak~~-~~kl~e  153 (336)
T d1b89a_          82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAAL-GLE-RAHMGMFTELAILYSKFK-PQKMRE  153 (336)
T ss_dssp             TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST-TCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHH-cCC-ccchHHHHHHHHHHHHhC-hHHHHH
Confidence            6544322     23333344566667788999999999999999999876 433 367778888999998865 334333


Q ss_pred             HH
Q 010994          259 VL  260 (496)
Q Consensus       259 ~~  260 (496)
                      .+
T Consensus       154 ~l  155 (336)
T d1b89a_         154 HL  155 (336)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=8e-07  Score=82.73  Aligned_cols=110  Identities=11%  Similarity=-0.027  Sum_probs=41.5

Q ss_pred             hHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHH
Q 010994          203 SYRICINSYGARSDLEGMEIILREMESQPHIVLDWSTYASAAHFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLY  282 (496)
Q Consensus       203 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~  282 (496)
                      .+..+...+.+.|+.+.|...++... ...  + ..++..+...+...|++++|...|++..+..+ .+..+|+.+...+
T Consensus       122 ~~~~lg~~~~~~~~~~~A~~~~~~al-~~~--~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         122 KSSQLGIISNKQTHTSAIVKPQSSSC-SYI--C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILA  196 (497)
T ss_dssp             ---------------------CCHHH-HHH--H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHH
T ss_pred             HHHHhHHHHHhCCCHHHHHHHHHHHh-CCC--H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHH
Confidence            34444444555555555554443332 111  0 12334445555555555555555555544332 3344555555555


Q ss_pred             HhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHH
Q 010994          283 ASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALM  318 (496)
Q Consensus       283 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  318 (496)
                      ...|+..+|+..|.+.....+ |...++..+...+.
T Consensus       197 ~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALS  231 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence            555555555555554444333 44444444444443

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=4.2e-05  Score=59.22  Aligned_cols=125  Identities=8%  Similarity=-0.062  Sum_probs=89.2

Q ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Q 010994          273 IGYNFLISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGY  352 (496)
Q Consensus       273 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  352 (496)
                      ..+......+.+.|++++|+..|.......+.......              .-......+.       ..+|+.+..+|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~--------------~~~~~~~~~~-------~~~~~nla~~y   72 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSN--------------EEAQKAQALR-------LASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCS--------------HHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccch--------------HHHhhhchhH-------HHHHHHHHHHH
Confidence            45566778899999999999999988776442211110              0001111111       12466788889


Q ss_pred             HhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHH
Q 010994          353 CNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSK  426 (496)
Q Consensus       353 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~  426 (496)
                      .+.|++++|+..++..++.++. ++..|..+..+|...|++++|+..|+++++       +.|+ ......+-.+
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~-------l~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ-------LYPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHHH
T ss_pred             Hhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHH-------hCCCCHHHHHHHHHH
Confidence            9999999999999999988755 888999999999999999999999999987       5564 4444444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.09  E-value=9.4e-05  Score=55.98  Aligned_cols=127  Identities=13%  Similarity=-0.035  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010994          309 DYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYF  388 (496)
Q Consensus       309 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  388 (496)
                      .+..-+..+.+.|++.+|...|.++.+.-.......              +...  ......    ....+|..+..+|.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~--------------~~~~--~~~~~~----~~~~~~~Nla~~~~   78 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWD--------------DQIL--LDKKKN----IEISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCC--------------CHHH--HHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhh--------------hHHH--HHhhhh----HHHHHHhhHHHHHH
Confidence            344556667777777777777777665311100000              0000  000000    02346788899999


Q ss_pred             hcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 010994          389 DAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKAN  461 (496)
Q Consensus       389 ~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~  461 (496)
                      +.|++++|++.++++++      -.+.+...|..+..++...|++++|...|+...+..|.+..+...+..+.
T Consensus        79 ~l~~~~~Al~~~~~al~------~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~  145 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLK------IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV  145 (153)
T ss_dssp             HTTCHHHHHHHHHHHHH------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             Hhcccchhhhhhhcccc------ccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            99999999999999998      23446789999999999999999999999999888888888777665443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=4.4e-05  Score=55.83  Aligned_cols=98  Identities=15%  Similarity=0.035  Sum_probs=51.1

Q ss_pred             HHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHH
Q 010994          347 AVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILS  425 (496)
Q Consensus       347 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~  425 (496)
                      .+...|.+.|++++|+..|.+.++.++. +...|..+..+|.+.|++++|++.++++++..-......++ ..+|..+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            3445555666666666666666655443 55566666666666666666666666665511000000000 124445555


Q ss_pred             HHhccCCHHHHHHHHHHHHh
Q 010994          426 KLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       426 ~~~~~g~~~~a~~~~~~~~~  445 (496)
                      .+...+++++|...|+....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            55556666666666654433

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.2e-05  Score=56.64  Aligned_cols=94  Identities=14%  Similarity=0.184  Sum_probs=65.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCC-CC-----HhHHHHHH
Q 010994          311 ITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKA-TT-----PNSWAVVA  384 (496)
Q Consensus       311 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~-----~~~~~~l~  384 (496)
                      ..+...+.+.|++++|...|.+..+.++ .+...+..+..+|.+.|++++|+..++++++.... +.     ..+|..+.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            3455667777777777777777776642 25666677777777777777777777776653211 01     13566777


Q ss_pred             HHHHhcCChHHHHHHHHHHHH
Q 010994          385 AGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       385 ~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ..+...+++++|++.|.+.+.
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            888888899999999988876

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.03  E-value=6.1e-05  Score=58.60  Aligned_cols=103  Identities=19%  Similarity=0.151  Sum_probs=78.3

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHhhhcCCCCC-C------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994          384 AAGYFDAGKTERGFQCMKAALSVYVEGKGWK-P------------------DPKVITSILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       384 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-p------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      .......|++++|.+.|.+++..+   .|.. +                  ....+..+..++...|++++|...++.+.
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~al   94 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREW---RGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALT   94 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC---CSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC---cccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            345566677777777777766522   1100 0                  11346677888899999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHhCC--CcHHHHHHHHH-----hCCCCCChhHHHH
Q 010994          445 TVIPMNRQMYHAFIKANIRNG--KGVDELLDSMK-----ADGIDEDEETKEI  489 (496)
Q Consensus       445 ~~~~~~~~~~~~l~~~~~~~g--~~a~~~~~~m~-----~~g~~p~~~t~~~  489 (496)
                      ...|.+...|..++.+|.+.|  .+|++.|+++.     +.|+.|+..|-.+
T Consensus        95 ~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l  146 (179)
T d2ff4a2          95 FEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL  146 (179)
T ss_dssp             HHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHH
Confidence            989999999999999999999  78999998874     4699999877443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.03  E-value=4.6e-05  Score=57.81  Aligned_cols=112  Identities=10%  Similarity=0.093  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC----------CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 010994          380 WAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP----------DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPM  449 (496)
Q Consensus       380 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  449 (496)
                      +..-...+.+.|++++|+..|.+++..........+          ...++..+..+|.+.|++++|...++......|.
T Consensus        20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~   99 (153)
T d2fbna1          20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN   99 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccch
Confidence            444455666777777777777777652211111111          1235666788899999999999999999888899


Q ss_pred             CHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHhh
Q 010994          450 NRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVCT  493 (496)
Q Consensus       450 ~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~~  493 (496)
                      +..+|..++.+|...|  ++|+..|++..+  +.|+..+....+..
T Consensus       100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~--l~P~n~~~~~~l~~  143 (153)
T d2fbna1         100 NVKALYKLGVANMYFGFLEEAKENLYKAAS--LNPNNLDIRNSYEL  143 (153)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HSTTCHHHHHHHHH
T ss_pred             hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence            9999999999999999  899999999988  56877665544443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.01  E-value=0.0001  Score=56.80  Aligned_cols=82  Identities=11%  Similarity=0.066  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHH
Q 010994          378 NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAF  457 (496)
Q Consensus       378 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l  457 (496)
                      ..|..+..+|.+.|++++|+..+++++.      --+.+...+..+..++...|++++|...|+.+....|.+...+..+
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~------l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l  138 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALG------LDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQI  138 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhh------cccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3567788899999999999999999997      2345677888999999999999999999999988888888888877


Q ss_pred             HHHHHhCC
Q 010994          458 IKANIRNG  465 (496)
Q Consensus       458 ~~~~~~~g  465 (496)
                      .....+.+
T Consensus       139 ~~~~~~~~  146 (168)
T d1kt1a1         139 FMCQKKAK  146 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77665554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=5.5e-05  Score=58.87  Aligned_cols=128  Identities=13%  Similarity=0.096  Sum_probs=84.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCc
Q 010994          278 LISLYASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGL  357 (496)
Q Consensus       278 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  357 (496)
                      ........|++++|.+.|.........+-..          .....+.+...-..+...    ....+..+...+.+.|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~----------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREWRGPVLD----------DLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG----------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccccc----------cCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence            3445677788888888887766643311000          000000111111111111    22356678888899999


Q ss_pred             hhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHH
Q 010994          358 VQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVI  420 (496)
Q Consensus       358 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~  420 (496)
                      +++|+..++++.+..+. +...|..++.+|...|+.++|++.|+++.....+..|+.|+..+-
T Consensus        83 ~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          83 ASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             chHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            99999999999988765 888999999999999999999999999876555556888887653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=5.3e-06  Score=77.04  Aligned_cols=226  Identities=10%  Similarity=-0.026  Sum_probs=115.4

Q ss_pred             cHHHHHHHHHHCCCCCC-hhhHHHHHHHHhhcCChHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 010994          184 KVPDVLTEMKAKNIFPD-NFSYRICINSYGARSDLEGMEIILREMESQPHIVLDW-STYASAAHFYIKANLIDKASDVLK  261 (496)
Q Consensus       184 ~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~  261 (496)
                      +|.+.|++..+.  +|+ ...+..+..++...|++++|   ++++. ..+  |+. ..++.....+  ...+..+.+.++
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i-~~d--p~~a~~~~~e~~Lw--~~~y~~~ie~~r   73 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKML-VTD--LEYALDKKVEQDLW--NHAFKNQITTLQ   73 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHH-HHC--HHHHHHHTHHHHHH--HHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHH-HcC--hhhHHHHhHHHHHH--HHHHHHHHHHHH
Confidence            467777777663  444 33455566666667777665   55554 221  111 1111111111  112344555666


Q ss_pred             HHHHhcccCccchHHHHHHHH--HhcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010994          262 KAEERLEQKDGIGYNFLISLY--ASLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNS  339 (496)
Q Consensus       262 ~m~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  339 (496)
                      ...+....++..-.......+  ...+.++.++..+.......+ ++...+..+...+.+.|+.+.|...+.......  
T Consensus        74 ~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--  150 (497)
T d1ya0a1          74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--  150 (497)
T ss_dssp             HHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--
T ss_pred             HhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--
Confidence            554433333333222222221  223445555554443333222 445667777888888888888888777665432  


Q ss_pred             CCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHH
Q 010994          340 YDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKV  419 (496)
Q Consensus       340 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~  419 (496)
                      | ..++..+...+...|++++|...|++..+..+. +...|+.+...+...|+..+|+..|.+++.      -.+|-...
T Consensus       151 ~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~------~~~~~~~a  222 (497)
T d1ya0a1         151 C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIA------VKFPFPAA  222 (497)
T ss_dssp             H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHS------SSBCCHHH
T ss_pred             H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh------CCCCCHHH
Confidence            1 245677888888899999999999998887654 667899999999999999999999999986      34566777


Q ss_pred             HHHHHHHHhcc
Q 010994          420 ITSILSKLGDE  430 (496)
Q Consensus       420 ~~~l~~~~~~~  430 (496)
                      +..|...+.+.
T Consensus       223 ~~nL~~~~~~~  233 (497)
T d1ya0a1         223 STNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777766543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.87  E-value=0.00015  Score=55.98  Aligned_cols=81  Identities=10%  Similarity=0.095  Sum_probs=62.6

Q ss_pred             CHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHH
Q 010994          376 TPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKP-DPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMY  454 (496)
Q Consensus       376 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  454 (496)
                      +...|..+..++.+.|++++|+..+.++++       +.| +...|..+..++...|++++|...|+...+..|.+...+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~-------~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~  148 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALE-------IDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQ  148 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-------TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhh-------hhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Confidence            344667778888888888888888888886       334 556888888888888888888888888888777787777


Q ss_pred             HHHHHHHHh
Q 010994          455 HAFIKANIR  463 (496)
Q Consensus       455 ~~l~~~~~~  463 (496)
                      ..+..+..+
T Consensus       149 ~~l~~~~~~  157 (169)
T d1ihga1         149 AELLKVKQK  157 (169)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776655543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.82  E-value=0.00027  Score=54.31  Aligned_cols=112  Identities=7%  Similarity=-0.019  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC---------HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCC
Q 010994          379 SWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD---------PKVITSILSKLGDEGSVQDVEAFVAALRTVIPM  449 (496)
Q Consensus       379 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  449 (496)
                      .+......+.+.|++++|+..|.+++.......+..+.         ...|..+..+|.+.|++++|...++......|.
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~   96 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA   96 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcccc
Confidence            44555667777788888888887777632111111111         123455667889999999999999999998999


Q ss_pred             CHHHHHHHHHHHHhCC--CcHHHHHHHHHhCCCCCChhHHHHHHh
Q 010994          450 NRQMYHAFIKANIRNG--KGVDELLDSMKADGIDEDEETKEILVC  492 (496)
Q Consensus       450 ~~~~~~~l~~~~~~~g--~~a~~~~~~m~~~g~~p~~~t~~~l~~  492 (496)
                      +..+|..+..+|...|  ++|+..|++..+  +.|+.......+.
T Consensus        97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~--l~P~n~~~~~~l~  139 (168)
T d1kt1a1          97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQIF  139 (168)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence            9999999999999999  899999999987  5677765544433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=0.00014  Score=56.17  Aligned_cols=77  Identities=12%  Similarity=0.032  Sum_probs=62.0

Q ss_pred             cccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHH
Q 010994          342 TRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVI  420 (496)
Q Consensus       342 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~  420 (496)
                      ...+..+..+|.+.|++++|+..+++.++..+. +...|..+..++...|++++|++.|+++++       +.|+ ....
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~-------l~p~n~~~~  148 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQE-------IAPEDKAIQ  148 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHH-------hCCCCHHHH
Confidence            445667788899999999999999999987665 788999999999999999999999999998       4554 4444


Q ss_pred             HHHHHH
Q 010994          421 TSILSK  426 (496)
Q Consensus       421 ~~l~~~  426 (496)
                      ..+..+
T Consensus       149 ~~l~~~  154 (169)
T d1ihga1         149 AELLKV  154 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.68  E-value=0.0003  Score=52.48  Aligned_cols=116  Identities=9%  Similarity=0.068  Sum_probs=79.5

Q ss_pred             HHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhc----------CChHHHHHHHHHHHHhhhcCCCCCC-CHHHH
Q 010994          352 YCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDA----------GKTERGFQCMKAALSVYVEGKGWKP-DPKVI  420 (496)
Q Consensus       352 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~~~p-~~~~~  420 (496)
                      |-+.+.+++|...|+...+..+. +...+..+..+|...          +.+++|+..|+++++       +.| +..+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~-------l~P~~~~a~   78 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-------IDPKKDEAV   78 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH-------hcchhhHHH
Confidence            34456678888888888777655 667777777766643          445789999999987       455 45788


Q ss_pred             HHHHHHHhccC-----------CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCCcHHHHHHHHHhCCC
Q 010994          421 TSILSKLGDEG-----------SVQDVEAFVAALRTVIPMNRQMYHAFIKANIRNGKGVDELLDSMKADGI  480 (496)
Q Consensus       421 ~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~~~~m~~~g~  480 (496)
                      ..+..+|...|           .+++|.+.|++..+..|.+...+..|...     ..|.+++.+..+.|+
T Consensus        79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-----~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-----AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-----HTHHHHHHHHHHSSS
T ss_pred             hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-----HHHHHHHHHHHHHhc
Confidence            88888876654           35778888888877666666555544433     246677777666654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.56  E-value=8.5e-05  Score=55.58  Aligned_cols=63  Identities=14%  Similarity=0.137  Sum_probs=43.0

Q ss_pred             chhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcC-----------ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHH
Q 010994          357 LVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAG-----------KTERGFQCMKAALSVYVEGKGWKPDPKVITSILS  425 (496)
Q Consensus       357 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~  425 (496)
                      .+++|+..|++.++.++. +..+|..+..+|...|           .+++|.+.|+++++       +.|+...+..-+.
T Consensus        56 ~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~-------l~P~~~~~~~~L~  127 (145)
T d1zu2a1          56 MIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD-------EQPDNTHYLKSLE  127 (145)
T ss_dssp             HHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc-------cCCCHHHHHHHHH
Confidence            445677777777766544 5667777777666544           36888999999987       7788776665554


Q ss_pred             HH
Q 010994          426 KL  427 (496)
Q Consensus       426 ~~  427 (496)
                      .+
T Consensus       128 ~~  129 (145)
T d1zu2a1         128 MT  129 (145)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.0012  Score=44.76  Aligned_cols=82  Identities=12%  Similarity=0.054  Sum_probs=54.5

Q ss_pred             HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHH
Q 010994          377 PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPD-PKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYH  455 (496)
Q Consensus       377 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  455 (496)
                      ...+-.+...+.+.|++++|+..|+++++.........++ ..++..+..++.+.|++++|...++++.+..|.+..+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            3344466777777788888888887777633222222333 356777777788888888888888877777777777666


Q ss_pred             HHH
Q 010994          456 AFI  458 (496)
Q Consensus       456 ~l~  458 (496)
                      .+.
T Consensus        85 Nl~   87 (95)
T d1tjca_          85 NLK   87 (95)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.51  E-value=2.8e-05  Score=64.78  Aligned_cols=124  Identities=12%  Similarity=0.006  Sum_probs=65.7

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHH
Q 010994          318 MKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGF  397 (496)
Q Consensus       318 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~  397 (496)
                      .+.|++++|...+++..+.. +.|...+..+...|+..|++++|...|+...+..+. +...+..+...+...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence            34577777777777777664 235566777777777777777777777777765432 3334444433333322222221


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCC
Q 010994          398 QCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIP  448 (496)
Q Consensus       398 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  448 (496)
                      .-......     .+-+++...+......+...|+.++|.+.++.+.+..|
T Consensus        85 ~~~~~~~~-----~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          85 QGAATAKV-----LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             TSCCCEEC-----CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHhhhhhc-----ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            11111000     01111222333344556667777777777777665443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.41  E-value=0.0034  Score=47.16  Aligned_cols=77  Identities=10%  Similarity=0.028  Sum_probs=47.6

Q ss_pred             cHHHHHHHHHhcCchhHHHHHHHHHHhc-----CCCCC-----HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCC
Q 010994          344 IPNAVIIGYCNNGLVQNAEAILEDLVEK-----GKATT-----PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGW  413 (496)
Q Consensus       344 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  413 (496)
                      .|+.+..+|...|++++|...+++.++.     ...++     ...++.+..+|...|++++|+..|+++++...+..+-
T Consensus        57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~  136 (156)
T d2hr2a1          57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  136 (156)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence            4555666666677777766666665532     11111     1246667788888888888888888888755444555


Q ss_pred             CCCHHHH
Q 010994          414 KPDPKVI  420 (496)
Q Consensus       414 ~p~~~~~  420 (496)
                      .+....+
T Consensus       137 ~~~~~~~  143 (156)
T d2hr2a1         137 TPGKERM  143 (156)
T ss_dssp             CTTHHHH
T ss_pred             HHHHHHH
Confidence            4554433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.40  E-value=0.00011  Score=61.17  Aligned_cols=52  Identities=21%  Similarity=0.073  Sum_probs=25.3

Q ss_pred             hcCCHHHHHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010994          284 SLGNKSEVLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELS  336 (496)
Q Consensus       284 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  336 (496)
                      +.|++++|+..++...+..+ .+...+..+...++..|++++|...++...+.
T Consensus         8 ~~G~l~eAl~~l~~al~~~P-~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASP-KDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34455555555554444443 44444455555555555555555555554443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.37  E-value=0.0016  Score=49.13  Aligned_cols=97  Identities=12%  Similarity=0.027  Sum_probs=68.6

Q ss_pred             HHHHHhcCchhHHHHHHHHHHhcCCC-CC----------HhHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCH
Q 010994          349 IIGYCNNGLVQNAEAILEDLVEKGKA-TT----------PNSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDP  417 (496)
Q Consensus       349 ~~~~~~~g~~~~a~~~~~~~~~~~~~-p~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~  417 (496)
                      ...+.+.|++++|+..|++.++.... |+          ...|+.+..+|...|++++|...+++++...-......++.
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            33455667777777777777653211 11          35788899999999999999999999987332212233332


Q ss_pred             -----HHHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010994          418 -----KVITSILSKLGDEGSVQDVEAFVAALRT  445 (496)
Q Consensus       418 -----~~~~~l~~~~~~~g~~~~a~~~~~~~~~  445 (496)
                           ..+..+..+|...|++++|...|++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                 2566778899999999999999997655

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.03  E-value=0.0014  Score=44.50  Aligned_cols=30  Identities=27%  Similarity=0.221  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010994          131 YQTYGALLNCYVRQRQTDKALSHFRKMKEM  160 (496)
Q Consensus       131 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  160 (496)
                      ..+++.+..++.+.|++++|+..+++..+.
T Consensus        46 ~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_          46 VSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            445666777777777777777777776665

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.90  E-value=0.14  Score=35.24  Aligned_cols=60  Identities=12%  Similarity=0.108  Sum_probs=32.5

Q ss_pred             HHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          345 PNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       345 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ++..++.+..+|+-+.-.++++.+.+. -.|++...-.+..+|-+.|...++-+++.++-+
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe  148 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK  148 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            344445555555555555555555442 334555555556666666666666666665555

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.79  E-value=0.17  Score=36.13  Aligned_cols=79  Identities=6%  Similarity=-0.051  Sum_probs=39.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHh----cCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCC
Q 010994          321 GEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCN----NGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD----AGK  392 (496)
Q Consensus       321 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~  392 (496)
                      .+.++|..++++..+.|   ++.....|...|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            34455555555555443   22233333333332    234566666666666554   34444445444443    235


Q ss_pred             hHHHHHHHHHHHH
Q 010994          393 TERGFQCMKAALS  405 (496)
Q Consensus       393 ~~~a~~~~~~~~~  405 (496)
                      .++|.++|+++.+
T Consensus       111 ~~~A~~~~~~Aa~  123 (133)
T d1klxa_         111 EKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5666666666554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.73  E-value=0.62  Score=41.28  Aligned_cols=115  Identities=10%  Similarity=0.027  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHhhcCCCCchhHHHHHH----HHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHH
Q 010994          286 GNKSEVLRLWDLEKTACKRYINRDYITMLE----ALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNA  361 (496)
Q Consensus       286 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  361 (496)
                      .+.+.+..++........ .+......+-.    .....+..+.+...+......+.  +.......+......+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHH
Confidence            355666666664444333 22222222211    12223445556666655544422  233333344444556666666


Q ss_pred             HHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHH
Q 010994          362 EAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAAL  404 (496)
Q Consensus       362 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  404 (496)
                      ...+..|...... ...-.-=+..++...|+.+.|...|..+.
T Consensus       305 ~~~~~~l~~~~~~-~~r~~YW~gRa~~~~G~~~~A~~~~~~~a  346 (450)
T d1qsaa1         305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLM  346 (450)
T ss_dssp             HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhcCccccc-HHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence            6666655432111 12222334456666777777777776664

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.53  E-value=0.24  Score=35.19  Aligned_cols=108  Identities=9%  Similarity=-0.106  Sum_probs=60.7

Q ss_pred             CHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCChHHHH
Q 010994          322 EHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGKATTPNSWAVVAAGYFD----AGKTERGF  397 (496)
Q Consensus       322 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~  397 (496)
                      |+++|..+|.+..+.|   +......+.  .....+.++|.+++++..+.|   ++.....|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            4566666666666554   222222222  123456777777777777765   45555556655554    34567777


Q ss_pred             HHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHh
Q 010994          398 QCMKAALSVYVEGKGWKPDPKVITSILSKLGD----EGSVQDVEAFVAALRT  445 (496)
Q Consensus       398 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~  445 (496)
                      ++|+++.+     .|   ++.....|...|..    ..+.++|.++|++..+
T Consensus        80 ~~~~~aa~-----~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~  123 (133)
T d1klxa_          80 QYYSKACG-----LN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACR  123 (133)
T ss_dssp             HHHHHHHH-----TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred             HHHhhhhc-----cC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHH
Confidence            77777776     33   23333444444433    3466677777766544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.13  E-value=0.29  Score=33.70  Aligned_cols=63  Identities=19%  Similarity=0.222  Sum_probs=34.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHhcCC
Q 010994          310 YITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVEKGK  373 (496)
Q Consensus       310 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  373 (496)
                      +...++.+...|+-++-.+++..+.+.+ ++++...-.+..+|.+.|...++.+++.+.-+.|.
T Consensus        89 vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          89 VNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            3344455555566666666665554432 44555555566666666666666666666665554

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.93  E-value=0.15  Score=33.19  Aligned_cols=64  Identities=13%  Similarity=0.188  Sum_probs=50.3

Q ss_pred             ChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 010994          392 KTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALRTVIPMNRQMYHAFIKA  460 (496)
Q Consensus       392 ~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~  460 (496)
                      +.-++.+-+..+..     ..+-|++.+..+-+++|.+.+++..|.++|+.++.....+...|..+++-
T Consensus        21 D~we~rrgmN~l~~-----~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yilqe   84 (105)
T d1v54e_          21 DAWELRKGMNTLVG-----YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE   84 (105)
T ss_dssp             CHHHHHHHHHHHTT-----SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred             cHHHHHHHHHHHhc-----cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            34456666666655     67889999999999999999999999999998888766566677776643

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.17  E-value=0.34  Score=33.56  Aligned_cols=47  Identities=11%  Similarity=0.205  Sum_probs=23.7

Q ss_pred             hhHHHHHHHHHHhcCCCCC-HhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          358 VQNAEAILEDLVEKGKATT-PNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       358 ~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      .++++.+++++...+.. + ...+-.+..+|.+.|++++|.++++.+++
T Consensus        54 ~~~gI~lLe~~~~~~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          54 ERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            44555555555543211 2 13444455555555666666655555554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=92.85  E-value=2.8  Score=36.76  Aligned_cols=203  Identities=7%  Similarity=-0.029  Sum_probs=108.3

Q ss_pred             CChHHHHHHHHHhhcCCCCCCCHHHHHHHH----HHHHhcCChHHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHH
Q 010994          215 SDLEGMEIILREMESQPHIVLDWSTYASAA----HFYIKANLIDKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSE  290 (496)
Q Consensus       215 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~  290 (496)
                      .+.+.+..++.........  +......+-    ..+...+..+.+...+......+  .+.....-.+......+++..
T Consensus       228 ~d~~~a~~~l~~~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~  303 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRG  303 (450)
T ss_dssp             HCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHH
T ss_pred             cChhHHHHHHHhhhhcccc--cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHH
Confidence            5677788888777522222  222222222    22233566677777776654433  233333334455667788888


Q ss_pred             HHHHHHHHHhhcCCCCchhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhcCchhHHHHHHHHHHh
Q 010994          291 VLRLWDLEKTACKRYINRDYITMLEALMKLGEHEEAEKVLKEWELSGNSYDTRIPNAVIIGYCNNGLVQNAEAILEDLVE  370 (496)
Q Consensus       291 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  370 (496)
                      +...++.+... ......-.-.+.+++...|+.+.|...|..+...   ++  .|. ++.+ .+.|..-.       +..
T Consensus       304 ~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG-~LAa-~~Lg~~~~-------~~~  368 (450)
T d1qsaa1         304 LNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYP-MVAA-QRIGEEYE-------LKI  368 (450)
T ss_dssp             HHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHH-HHHH-HHTTCCCC-------CCC
T ss_pred             HHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHH-HHHH-HHcCCCCC-------CCc
Confidence            88888865332 2233344567788888999999999999887642   21  232 2221 11221000       000


Q ss_pred             cCCC--CCH----hHHHHHHHHHHhcCChHHHHHHHHHHHHhhhcCCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 010994          371 KGKA--TTP----NSWAVVAAGYFDAGKTERGFQCMKAALSVYVEGKGWKPDPKVITSILSKLGDEGSVQDVEAFVAALR  444 (496)
Q Consensus       371 ~~~~--p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  444 (496)
                      ..+.  +..    ..-..-+..+...|....|...|..+..     ..   +......+.....+.|.++.|+.......
T Consensus       369 ~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~-----~~---~~~~~~~la~lA~~~g~~~~aI~a~~~~~  440 (450)
T d1qsaa1         369 DKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK-----SK---SKTEQAQLARYAFNNQWWDLSVQATIAGK  440 (450)
T ss_dssp             CCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT-----TC---CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh-----CC---CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence            0000  000    0011224456667777777777776665     34   23344555666777777777777666544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.39  E-value=1.1  Score=30.96  Aligned_cols=49  Identities=16%  Similarity=0.030  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHhcccCccchHHHHHHHHHhcCCHHHHHHHHHHHHhhc
Q 010994          254 DKASDVLKKAEERLEQKDGIGYNFLISLYASLGNKSEVLRLWDLEKTAC  302 (496)
Q Consensus       254 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  302 (496)
                      ++++.+++++....+.-....+-.+.-+|.+.|++++|.+.++.+....
T Consensus        55 ~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          55 RLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            3455555554443221112333444444555555555555555444433

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.91  E-value=1.2  Score=28.82  Aligned_cols=46  Identities=7%  Similarity=0.016  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 010994          360 NAEAILEDLVEKGKATTPNSWAVVAAGYFDAGKTERGFQCMKAALS  405 (496)
Q Consensus       360 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  405 (496)
                      ++.+-++.+...+..|++....+.+.+|-+.+++..|+++++-...
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4455555555566666666666666666666666666666666554