Citrus Sinensis ID: 011038

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-----
Protein Sequence
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEFRLHLNQKRLTTKLLDTVRKMER
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHccHHHHccccccccccccHHHccHHHHHcccccccHHHHHHHHcHHHHHccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEEEEEcccccccccEEEcccccccHHHHHHHHHHHHHHHcccccccccccccccccccccEEcccccEEEEEEccccccccccccccccccEEEEccccEcccccEEccccccccHHccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccHHHHHHHHHEHHcHcHHHHHHHHHHHccEEEEEccccEEHHEEEEEccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mgaiklelrcpqkvdgiaidpepdwSFDALLSELNSLETrlnasskpvpftktksreistgksvesNARAFVIRVsddelendnerkgeevhngsLVAVKRFTCDalylsesddsdddvalggesylmdevglADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSkritagvsqdgacgrqpddssviagaqsrgsrsdgTKKLQSAVRATESALNIEQKRLQKLKELDEEnqslklssnedfsgyEKDISRLIRQIRGLKDNVRTKASELVKIlnnplcpqsislaTFSKKVVsrcetpddnvamSCGYVIVLVASQVPQVMDILLGEFHRAciytvpkhivFSEFRLHLNQKRLTTKLLDTVRKMER
Flexible Loop (DISEMBL)
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLEtrlnasskpvpftktksreistgksvesnarafvirvsddelendnerkgeevhngslvavKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETqliseneqsnsalaqvekdrdmrremdrKNDTVYQRKIAEaldnhltavqrdhelksqieerkirsdaayeEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAereaaenskritagvsqdgacgrqPDDSSVIagaqsrgsrsdgtkKLQSAVRATESALNIEQKRLQKLKEldeenqslklssnedfsgyeKDISRLIRQIRGLKDNVRTKASELVKilnnplcpqsiSLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSefrlhlnqkrlttklldtvrkmer
Low Complexity Region (SEG)
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSEsddsdddVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVekdrdmrremdrkndTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDaayeeakrkeraLQEEKIRQEKVKAEAEMQaklraeeakraaleaekraakeaaereaaeNSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEFRLHLNQKRLTTKLLDTVRKMER
Disordered region (IsUnstruct)
*******LRCPQKVDGIAIDPEPDWSFDALL**************************************************************GSLVAVKRFTCDALYLS********VALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLET********************************************************************************************************************************************************************************************************************DISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEFRLHLNQKRLTTKLL********
Disordered Region (DISOPRED)
********RCP**VDGIAIDPEPDWSFDALLSEL**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************LCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEFRLHLNQKRLTTKLLDTVRK***
Disordered Region (DISEMBL)
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS******************VESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDA***********LQEEKIRQEKVKAEAEMQAKLRAE****************************ITAGVSQDGACGRQPDDSSV************************ESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEFRLHLNQKRLTTKLLDTVRKMER
Disordered Region (DISPRO)
*GAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNAS**PVP**********TGKSVESNARAFVIRVSD************EVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEE**************************************************************************************************AVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEFRLHLNQKRLTTKLLDTVRKM**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVxxxxxxxxxxxxxxxxxxxxxSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAxxxxxxxxxxxxxxxxxxxxxDEENQSLKLSSNEDxxxxxxxxxxxxxxxxxxxxxVRTKASELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEFRLHLNQKRLTTKLLDTVRKMER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
296081385	701	unnamed protein product [Vitis vinifera]	0.935	0.660	0.604	1e-148
359473158	680	PREDICTED: uncharacterized protein LOC10	0.933	0.679	0.606	1e-141
255547998	613	Nucleoporin GLE1, putative [Ricinus comm	0.923	0.745	0.610	1e-137
147859341	745	hypothetical protein VITISV_036820 [Viti	0.935	0.621	0.567	1e-136
356538127	629	PREDICTED: uncharacterized protein LOC10	0.905	0.712	0.534	1e-120
15222184	611	embryo defective 1745 protein [Arabidops	0.892	0.723	0.497	1e-109
297849694	614	EMB1745 [Arabidopsis lyrata subsp. lyrat	0.890	0.718	0.494	1e-107
4850395	635	EST gb|N37870 comes from this gene [Arab	0.907	0.707	0.482	1e-107
449435436	641	PREDICTED: uncharacterized protein LOC10	0.915	0.706	0.514	1e-100
357463209	599	Nucleoporin GLE1 [Medicago truncatula] g	0.8	0.661	0.479	1e-92

>gi|296081385|emb|CBI16818.3| unnamed protein product [Vitis vinifera]

 Score =  530 bits (1364), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 292/483 (60%), Positives = 357/483 (73%), Gaps = 20/483 (4%)

Query: 1   MGAIKLELRCPQKVDGI-AIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREI 58
           MGA+KLELRCPQ  +GI A DPEPDWSF+AL+SELNSLE +LN+SS  P+PFTKT+SR +
Sbjct: 40  MGAVKLELRCPQNENGIIAADPEPDWSFEALVSELNSLELKLNSSSIFPIPFTKTESRGL 99

Query: 59  STGKSVESNARAFVIRVSDDELENDNERKG--EEVHNGSLVAVKRFTCDALYLSESDDSD 116
           S   +V+    AFV+RVSDDE+E D ER+G  E V++ SLVA  RF CD LYLS   DSD
Sbjct: 100 S---NVKKGPTAFVMRVSDDEME-DVEREGGVEGVYDRSLVAGSRFACDELYLS---DSD 152

Query: 117 DDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALA 176
           D+  L  + +LMD+ G+A+GA  ELTH+HQL VKEE+R  IS LET L  E ++S SA+ 
Sbjct: 153 DESNLHDQFHLMDKAGVAEGAFFELTHEHQLAVKEEVRTQISVLETDLTHERKKSTSAIV 212

Query: 177 QVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAK 236
           +VEK  + RREMDRK D  YQR IAEALDNH+TAVQRDHE +SQIEER+IR++AA+EEA 
Sbjct: 213 RVEKYIEARREMDRKLDIQYQRNIAEALDNHMTAVQRDHEHRSQIEERRIRNEAAFEEA- 271

Query: 237 RKERALQEEKIRQEKVKAEA----EMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSK 292
           RKE+ALQEEK+RQEK KAEA    E+ AK RAEEAK AALE E+RAAKEAAERE    S 
Sbjct: 272 RKEKALQEEKLRQEKAKAEAKVRLELAAKKRAEEAKIAALEDERRAAKEAAEREGIGAST 331

Query: 293 RITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSA---VRATESALNIEQKRLQ 349
           R    V+   A G Q D S  I  AQ  GS++DGTKK QSA   +++ ESAL +EQ+RLQ
Sbjct: 332 RAATEVAPKEATGHQRDASLGILNAQLNGSKTDGTKKAQSAGNILKSAESALKLEQERLQ 391

Query: 350 KLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQS 409
           K KE DE+ Q+L  SSN+DF  +E+  +R IRQI G K+NVRTK + L+K+ N+PLCPQ 
Sbjct: 392 KYKEFDEKTQALGQSSNKDFQRHEQQFARRIRQISGSKENVRTKGNALIKMFNDPLCPQP 451

Query: 410 ISLATFSKKVVSRCETPDDN-VAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHI 468
           I++A F KKVVS  E    + V  +CG+VIV VASQVP  MD+LL E HR CIYTVPKHI
Sbjct: 452 INVAIFVKKVVSYFEVDQPSKVTYACGHVIVFVASQVPYAMDLLLAELHRVCIYTVPKHI 511

Query: 469 VFS 471
            +S
Sbjct: 512 DYS 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359473158|ref|XP_002282194.2| PREDICTED: uncharacterized protein LOC100245667 [Vitis vinifera]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 290/478 (60%), Positives = 356/478 (74%), Gaps = 16/478 (3%)

Query: 2   GAIKLELRCPQKVDGI-AIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREIS 59
           GA+KLELRCPQ  +GI A DPEPDWSF+AL+SELNSLE +LN+SS  P+PFTKT+SR +S
Sbjct: 24  GAVKLELRCPQNENGIIAADPEPDWSFEALVSELNSLELKLNSSSIFPIPFTKTESRGLS 83

Query: 60  TGKSVESNARAFVIRVSDDELENDNERKG--EEVHNGSLVAVKRFTCDALYLSESDDSDD 117
              +V+    AFV+RVSDDE+E D ER+G  E V++ SLVA  RF CD LYLS   DSDD
Sbjct: 84  ---NVKKGPTAFVMRVSDDEME-DVEREGGVEGVYDRSLVAGSRFACDELYLS---DSDD 136

Query: 118 DVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQ 177
           +  L  + +LMD+ G+A+GA  ELTH+HQL VKEE+R  IS LET L  E ++S SA+ +
Sbjct: 137 ESNLHDQFHLMDKAGVAEGAFFELTHEHQLAVKEEVRTQISVLETDLTHERKKSTSAIVR 196

Query: 178 VEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKR 237
           VEK  + RREMDRK D  YQR IAEALDNH+TAVQRDHE +SQIEER+IR++AA+EEA R
Sbjct: 197 VEKYIEARREMDRKLDIQYQRNIAEALDNHMTAVQRDHEHRSQIEERRIRNEAAFEEA-R 255

Query: 238 KERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAG 297
           KE+ALQEEK+RQEK KAEA++ AK RAEEAK AALE E+RAAKEAAERE    S R    
Sbjct: 256 KEKALQEEKLRQEKAKAEAKLAAKKRAEEAKIAALEDERRAAKEAAEREGIGASTRAATE 315

Query: 298 VSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSA---VRATESALNIEQKRLQKLKEL 354
           V+   A G Q D S  I  AQ  GS++DGTKK QSA   +++ ESAL +EQ+RLQK KE 
Sbjct: 316 VAPKEATGHQRDASLGILNAQLNGSKTDGTKKAQSAGNILKSAESALKLEQERLQKYKEF 375

Query: 355 DEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLAT 414
           DE+ Q+L  SSN+DF  +E+  +R IRQI G K+NVRTK + L+K+ N+PLCPQ I++A 
Sbjct: 376 DEKTQALGQSSNKDFQRHEQQFARRIRQISGSKENVRTKGNALIKMFNDPLCPQPINVAI 435

Query: 415 FSKKVVSRCETPDDN-VAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFS 471
           F KKVVS  E    + V  +CG+VIV VASQVP  MD+LL E HR CIYTVPKHI +S
Sbjct: 436 FVKKVVSYFEVDQPSKVTYACGHVIVFVASQVPYAMDLLLAELHRVCIYTVPKHIDYS 493

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547998|ref|XP_002515056.1| Nucleoporin GLE1, putative [Ricinus communis] gi|223546107|gb|EEF47610.1| Nucleoporin GLE1, putative [Ricinus communis]

 Score =  496 bits (1276), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 291/477 (61%), Positives = 364/477 (76%), Gaps = 20/477 (4%)

Query: 2   GAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREISTG 61
           GA KLELRCPQ+V+ + +DP PDWSFD+LLSEL+SLE +LN SS   PFTKT SR     
Sbjct: 4   GAFKLELRCPQRVNEVGVDPNPDWSFDSLLSELSSLENKLNNSSS-APFTKTLSRR---- 58

Query: 62  KSVESNARAFVIRVSDDELE-NDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVA 120
                + RAFV+RVSDDE+E ND+E   E+ H  SLV  KRF  D ++L +SDDSD +  
Sbjct: 59  -----SRRAFVMRVSDDEVEDNDSEGDDEKDHTQSLVVAKRFNYDDIHLCDSDDSDYEND 113

Query: 121 LGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEK 180
           L   SYLM++VGL + +L EL+ +HQLGVKEEIRN IS LE +L+ E+E+SNSA  +VEK
Sbjct: 114 LDSYSYLMEKVGLVESSLFELSQEHQLGVKEEIRNQISALEMELMRESEKSNSAFNRVEK 173

Query: 181 DRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKER 240
            R+ R+E DRK DT YQRKIAEALDNHLT++QRDHELKSQIEERKIRSDAA+EEA+RKE+
Sbjct: 174 YREARKESDRKFDTQYQRKIAEALDNHLTSIQRDHELKSQIEERKIRSDAAHEEARRKEK 233

Query: 241 ALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQ 300
           ALQEE++RQE+ +AEAE  AK +AEEAK AALEAE++AAKEAAE+EAAE SK+  A VS 
Sbjct: 234 ALQEERLRQERARAEAE--AKRKAEEAKMAALEAERKAAKEAAEKEAAEASKKQAATVSG 291

Query: 301 DGACGRQPDDSSVIAGAQSRGSRSDGTKKLQ---SAVRATESALNIEQKRLQKLKELDEE 357
           +   G +   SS      S+G+ S+GT K Q   S +RA ESAL++EQKRL+KL+ L+E+
Sbjct: 292 EDVAGNRVHASSANWDVNSQGAVSNGTNKSQLAGSIIRAAESALSLEQKRLEKLRALEEQ 351

Query: 358 NQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSIS---LAT 414
           N+SLKLSSN DFS +E+ ++RLI+QIRG K+NVR K+SELVK+  NP CPQSIS   +AT
Sbjct: 352 NRSLKLSSNMDFSSHERHVARLIKQIRGTKENVRAKSSELVKLCQNPSCPQSISIAAIAT 411

Query: 415 FSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFS 471
           F KKV S+ E PD  V  +C YVIV+V SQVP  M++LL EFHR CIYTVP+H+ +S
Sbjct: 412 FPKKVASQSELPDSAV-FACAYVIVMVTSQVPHSMNLLLAEFHRGCIYTVPRHVTYS 467

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147859341|emb|CAN81849.1| hypothetical protein VITISV_036820 [Vitis vinifera]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 282/497 (56%), Positives = 349/497 (70%), Gaps = 34/497 (6%)

Query: 1   MGAIKLELRCPQKVDGI-AIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREI 58
           MGA+KLELRCPQ  +GI A DPEPDWSF+AL+SELNSLE +LN+SS  P+PFTKT+SR +
Sbjct: 70  MGAVKLELRCPQNENGIIAADPEPDWSFEALVSELNSLELKLNSSSIFPIPFTKTESRGL 129

Query: 59  STGKSVESNARAFVIRVSDDELENDNERKG--EEVHNGSLVAVKRFTCDALYL----SES 112
           S   +V+    AFV+RVSDDE+E D ER+G  EEV++ SLVA  RF CD LYL       
Sbjct: 130 S---NVKKGPTAFVMRVSDDEME-DVEREGGVEEVYDRSLVAGSRFACDELYLRFCKWPF 185

Query: 113 DDSDDDVALGGESYLMDEVGLADGAL----------VELTHQHQLGVKEEIRNLISTLET 162
            DSDD+  L  + +LMD+ G+A+G            + +   + L   EE+R  IS LET
Sbjct: 186 SDSDDESNLHDQFHLMDKAGVAEGIRDVGMADDPISISIFDGNYL---EEVRTQISVLET 242

Query: 163 QLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIE 222
            L  E ++S SA+ +VEK  + RREMDRK D  YQR IAEALDNH+TAVQRDHE +SQIE
Sbjct: 243 DLTHERKKSTSAIVRVEKYIEARREMDRKLDIQYQRNIAEALDNHMTAVQRDHEHRSQIE 302

Query: 223 ERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEA----EMQAKLRAEEAKRAALEAEKRA 278
           ER+IR++AA+EEA RKE+ALQEEK+RQEK KAEA    E+ AK RAEEAK  ALE E+RA
Sbjct: 303 ERRIRNEAAFEEA-RKEKALQEEKLRQEKAKAEAKVRLELAAKKRAEEAKITALEDERRA 361

Query: 279 AKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSA---VR 335
           AKEAAERE    S R    V+   A G Q D S  I  AQ  GS++DGTKK QSA   ++
Sbjct: 362 AKEAAEREGIGASTRAATEVAPKEATGHQRDASLGILNAQLNGSKTDGTKKAQSAGNILK 421

Query: 336 ATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKAS 395
           + ESAL +EQ+RLQK KE DE+ Q+L  SSN+DF  +E+  +R IRQI G K+NVRTK +
Sbjct: 422 SAESALKLEQERLQKYKEFDEKTQALGQSSNKDFQRHEQQFARRIRQISGSKENVRTKGN 481

Query: 396 ELVKILNNPLCPQSISLATFSKKVVSRCETPDDN-VAMSCGYVIVLVASQVPQVMDILLG 454
            L+K+ N+PLCPQ I++A F KKVVS  E    + V  +CG+VIV VASQVP  MD+LL 
Sbjct: 482 GLIKMFNDPLCPQPINVAIFVKKVVSYFEVDQPSKVTYACGHVIVFVASQVPYAMDLLLA 541

Query: 455 EFHRACIYTVPKHIVFS 471
           E HR CIYTVPKHI +S
Sbjct: 542 ELHRVCIYTVPKHIDYS 558

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538127|ref|XP_003537556.1| PREDICTED: uncharacterized protein LOC100802744 [Glycine max]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 264/494 (53%), Positives = 337/494 (68%), Gaps = 46/494 (9%)

Query: 2   GAIKLELRCP-QKVDGIAIDPEPDWSFDALLSELNSLETRL--NASS---KPVPFTKTKS 55
           GA+KL LRC  Q+VDG+A +PEPDW+FD L+SELN+LET+L  NASS   +  P  K+ S
Sbjct: 3   GAVKLNLRCSSQRVDGVAAEPEPDWTFDDLVSELNALETKLATNASSSTQRSSPLDKSIS 62

Query: 56  REISTGKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLVAV----KRFTCDALYLSE 111
           +    GK ++   RAFV+R   DE + ++    ++ H    + V    KRFTCD LYLS 
Sbjct: 63  K---CGKEIQ-RGRAFVLRA--DEFDMEDSESDDDDHVDRALVVTDSGKRFTCDELYLS- 115

Query: 112 SDDSDDDVALGGE--SYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENE 169
             D D D+A G E   YLMDE+G  +GAL+ELTH+HQL VK+EIRN IS LET L++E +
Sbjct: 116 --DDDSDIASGFEVRPYLMDELGEVEGALLELTHEHQLRVKDEIRNKISALETALVNETQ 173

Query: 170 QSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSD 229
            S S+  +VEK ++ R ++D+K DT YQR+IAEALDNHLTAVQRD EL+SQIEERKIRSD
Sbjct: 174 NSTSSFLRVEKYKETRLDLDKKFDTQYQRRIAEALDNHLTAVQRDRELRSQIEERKIRSD 233

Query: 230 AAYEEAKRK----------ERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAA 279
           AAYEEAKRK           +A  E K+R E+ K EAE +A + A+  K+AA+EAEK AA
Sbjct: 234 AAYEEAKRKVAFEKQQQEKAKAEAEAKLRAEEAKREAESKAAMEAK--KQAAIEAEKSAA 291

Query: 280 KEA---AEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRA 336
            EA   AE+EA E SKR+T+G +Q  A       +S ++ A+        TK+  +  RA
Sbjct: 292 VEAERRAEKEATETSKRVTSGGTQQ-ATAHPTGTASSLSNAE--------TKESGNLYRA 342

Query: 337 TESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASE 396
             +ALN+EQ RLQKLKEL E NQ ++ S NED + +E  ISR IRQIRG+ DNVR+KASE
Sbjct: 343 AANALNLEQWRLQKLKELCEGNQMIRSSYNEDCTRHEGRISRNIRQIRGISDNVRSKASE 402

Query: 397 LVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEF 456
           L K+L++P   QSIS+  F+KKVV+ C  P  NV  +  YVIVLV SQVP  MDILL E 
Sbjct: 403 LTKLLSHPQSFQSISIEIFAKKVVAYCANP-ANVPFASAYVIVLVTSQVPHAMDILLAEL 461

Query: 457 HRACIYTVPKHIVF 470
           HRACIYTVPKH+V+
Sbjct: 462 HRACIYTVPKHLVY 475

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15222184|ref|NP_172771.1| embryo defective 1745 protein [Arabidopsis thaliana] gi|110737727|dbj|BAF00802.1| hypothetical protein [Arabidopsis thaliana] gi|332190851|gb|AEE28972.1| embryo defective 1745 protein [Arabidopsis thaliana]

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 239/480 (49%), Positives = 324/480 (67%), Gaps = 38/480 (7%)

Query: 1   MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNA-SSKPVPFTKTKSREIS 59
           MG I LE  CP+ VDGI+IDPEP+W+F++L++E+ S+E +LN  S  P P T T  R   
Sbjct: 1   MG-IVLEPPCPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLRMGR 59

Query: 60  TGKSVESNARAFVIRVSDDELENDNERKGEEV-----HNGSLVAVKRFTCDALYLSESDD 114
            G         FV+ VS+DE+E+D   + ++      H+    A KRF CD LYLS  D+
Sbjct: 60  RGG-------GFVMHVSEDEMESDEGEESDDEEEEEDHSQICTAGKRFACDELYLS--DE 110

Query: 115 SDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSA 174
           SD++     E Y+M+++GLA+ AL E+ + HQ  +K++IRN +S +ET++++E E S SA
Sbjct: 111 SDEEFDHEPE-YMMNKLGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIETSLSA 169

Query: 175 LAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEE 234
           +A+VEK  + R+E++RK D  YQRK+AEALD HLTAVQR+H++KSQIEERKIRS+ A EE
Sbjct: 170 IARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSEEAQEE 229

Query: 235 AKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKR--AAKEAAEREAAENSK 292
           A+RKERA QEEKIRQEK +AEA+M AK+RAEE K+       R  A KE A+R+AAE   
Sbjct: 230 ARRKERAHQEEKIRQEKARAEAQMLAKIRAEEEKKEVERKAAREVAEKEVADRKAAEQK- 288

Query: 293 RITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLK 352
                +++  A       SS  + AQ+ G          +++RA ESAL +E  RL+KL+
Sbjct: 289 -----LAEQKAVIESVTGSSATSNAQAGG----------NSIRAAESALILENHRLKKLE 333

Query: 353 ELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISL 412
           EL+  NQSLK  SNE+FS +EK I R+IRQI G KD+V  K +++VKI  +P CP SIS+
Sbjct: 334 ELETTNQSLKSRSNENFSSFEKHIGRVIRQISGTKDSVSGKINDIVKIFKDPRCPVSISI 393

Query: 413 ATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSE 472
           A F+KK+V+  E P+     +C YVIV + SQ PQVMDILL EFH+ACIYTVPKHIV S+
Sbjct: 394 AAFAKKMVTTKEKPN---PFACSYVIVYINSQFPQVMDILLAEFHKACIYTVPKHIVNSQ 450

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849694|ref|XP_002892728.1| EMB1745 [Arabidopsis lyrata subsp. lyrata] gi|297338570|gb|EFH68987.1| EMB1745 [Arabidopsis lyrata subsp. lyrata]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 235/475 (49%), Positives = 320/475 (67%), Gaps = 34/475 (7%)

Query: 3   AIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREISTG 61
            I LE  CP+ VDGI+IDPEP+W+FD+L++E+ S+E +LN  S  P P T T  R    G
Sbjct: 8   GIVLEPPCPKSVDGISIDPEPNWNFDSLVAEIESVEKKLNGFSMFPQPITNTTLR---IG 64

Query: 62  KSVESNARAFVIRVSDDELENDNERKGEEV--HNGSLVAVKRFTCDALYLSESDDSDDDV 119
           +S       FV+RVSD+E+E+D+  + EE   H+    A KRF CD LYLS  D+SDD+ 
Sbjct: 65  RS----GGGFVMRVSDEEMESDDVEEEEEEEDHSQICTAGKRFACDELYLS--DESDDEF 118

Query: 120 ALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVE 179
               E Y+M+++GLA+ AL E+ + HQ  +K++IRN +S +ET++++E E S SA+A+VE
Sbjct: 119 DHEPE-YMMNKMGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIETSRSAIARVE 177

Query: 180 KDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKE 239
           K  + R+E++RK D  YQRK+AEALD HLTAVQR+H++KSQIEERKIRS+ A EEA+RKE
Sbjct: 178 KYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSEEAQEEARRKE 237

Query: 240 RALQEEKIRQEKVKAEAEMQAKL--RAEEAKRAALEAEKRAAKEAAEREAAENSKRITAG 297
           RA QEEKI QEK  AEAEM AK+    E+ +     A++ A KE A+R+AAE        
Sbjct: 238 RAHQEEKISQEKAHAEAEMLAKIRAEEEKKEVERKAAKEVAEKEVADRKAAEQKLAEQKA 297

Query: 298 VSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEE 357
           V +           SV  G+ +  +++ G      ++RA E+AL +E  RL+KL+EL+  
Sbjct: 298 VIE-----------SVTGGSATSNAQAGG-----KSIRAAENALTLENHRLKKLEELETM 341

Query: 358 NQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSK 417
           NQSLK  SNE+FS +EK I R+IRQI G KD+V  K +E+VKI  +P CP SIS+A F+K
Sbjct: 342 NQSLKSRSNENFSSFEKHIGRVIRQISGTKDSVSGKINEIVKIFKDPRCPVSISIAAFAK 401

Query: 418 KVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSE 472
           K+V+  E P+     +  YVIV + SQ PQ MDILL EFH+ACIYTVPKHI+ S+
Sbjct: 402 KMVTTKEKPN---PFASSYVIVYITSQFPQAMDILLAEFHKACIYTVPKHIINSQ 453

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4850395|gb|AAD31065.1|AC007357_14 EST gb|N37870 comes from this gene [Arabidopsis thaliana]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 240/497 (48%), Positives = 327/497 (65%), Gaps = 48/497 (9%)

Query: 1   MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNA-SSKPVPFTKTKSREIS 59
           MG I LE  CP+ VDGI+IDPEP+W+F++L++E+ S+E +LN  S  P P T T  R  +
Sbjct: 1   MG-IVLEPPCPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLRTNN 59

Query: 60  TG-----------------KSVESNARAFVIRVSDDELENDNERKGEEV-----HNGSLV 97
            G                 K +      FV+ VS+DE+E+D   + ++      H+    
Sbjct: 60  NGLRNICVNLFGIGVHWYVKRMGRRGGGFVMHVSEDEMESDEGEESDDEEEEEDHSQICT 119

Query: 98  AVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLI 157
           A KRF CD LYLS  D+SD++     E Y+M+++GLA+ AL E+ + HQ  +K++IRN +
Sbjct: 120 AGKRFACDELYLS--DESDEEFDHEPE-YMMNKLGLAESALYEVINDHQTEIKDDIRNQV 176

Query: 158 STLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHEL 217
           S +ET++++E E S SA+A+VEK  + R+E++RK D  YQRK+AEALD HLTAVQR+H++
Sbjct: 177 SVVETEIMNEIETSLSAIARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKI 236

Query: 218 KSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKR 277
           KSQIEERKIRS+ A EEA+RKERA QEEKIRQEK +AEA+M AK+RAEE K+       R
Sbjct: 237 KSQIEERKIRSEEAQEEARRKERAHQEEKIRQEKARAEAQMLAKIRAEEEKKEVERKAAR 296

Query: 278 --AAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVR 335
             A KE A+R+AAE        +++  A       SS  + AQ+ G          +++R
Sbjct: 297 EVAEKEVADRKAAEQK------LAEQKAVIESVTGSSATSNAQAGG----------NSIR 340

Query: 336 ATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKAS 395
           A ESAL +E  RL+KL+EL+  NQSLK  SNE+FS +EK I R+IRQI G KD+V  K +
Sbjct: 341 AAESALILENHRLKKLEELETTNQSLKSRSNENFSSFEKHIGRVIRQISGTKDSVSGKIN 400

Query: 396 ELVKILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGE 455
           ++VKI  +P CP SIS+A F+KK+V+  E P+     +C YVIV + SQ PQVMDILL E
Sbjct: 401 DIVKIFKDPRCPVSISIAAFAKKMVTTKEKPN---PFACSYVIVYINSQFPQVMDILLAE 457

Query: 456 FHRACIYTVPKHIVFSE 472
           FH+ACIYTVPKHIV S+
Sbjct: 458 FHKACIYTVPKHIVNSQ 474

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435436|ref|XP_004135501.1| PREDICTED: uncharacterized protein LOC101216938 [Cucumis sativus]

 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 248/482 (51%), Positives = 342/482 (70%), Gaps = 29/482 (6%)

Query: 1   MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSKPVPFTKTKSREIST 60
           M  +KL LRCP K+  + +DP+PD+SFD L  EL+SLE +LN S+  +PF KT SR+   
Sbjct: 1   MSPVKLTLRCPSKIGQVTVDPDPDFSFDDLRVELHSLEEKLNKST--MPFKKTCSRDFPV 58

Query: 61  GKSVESNARAFVIRVSDDELENDNERKGEEVHNGSLV-----AVKRFTCDALYLSESDDS 115
            K+++ + + F++ V +DEL+        E+ N  +V        RF CD ++LS+S+DS
Sbjct: 59  TKTLKRSFKPFIMGVYEDELK--------EIFNDEVVREPSSNANRFNCDGIFLSDSEDS 110

Query: 116 DDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSAL 175
           D+D     ++YL +++ L + +L ELTH H L +KEEIRN +  LET L + NE+S++A+
Sbjct: 111 DNDSTPEAQAYLKEDMDLVESSLAELTHDHMLNIKEEIRNQLGRLETDLTTLNEKSSAAI 170

Query: 176 AQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEA 235
           +Q+EK  + RRE DR+ DT YQR+IAE LD +LT VQ  HE  SQ EERKIRSDAA+EEA
Sbjct: 171 SQIEKYYEARREADRRLDTQYQREIAEGLDKYLTTVQHHHEQISQREERKIRSDAAFEEA 230

Query: 236 KRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRIT 295
           KRKE+A+ E+K RQEK+KAEAE +AK  AEEA +AA+EAE+RA KEAAEREAAEN K++ 
Sbjct: 231 KRKEKAILEDKKRQEKLKAEAEAKAK--AEEAMKAAIEAERRATKEAAEREAAENLKKVN 288

Query: 296 AGVSQD---GACGRQPDDSSVIAGAQSRGSRSDGT---KKLQSAVRATESALNIEQKRLQ 349
               Q+   G+   +P +S      Q +G+ SD T   K   S VRA++SAL +E++RLQ
Sbjct: 289 NVQVQETMVGSLTTKPVNSV----GQPKGTTSDETFVSKSPDSMVRASKSALALERERLQ 344

Query: 350 KLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQS 409
           +LKE++E NQ+L+LS N+DF+ YE+ I+RLI+QI G K+NVRTK SE++KI   PLCPQ+
Sbjct: 345 QLKEVEEGNQALRLSPNKDFNTYERHIARLIKQIGGTKENVRTKTSEILKIFMAPLCPQT 404

Query: 410 ISLATFSKKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIV 469
           IS+A F+KK+VS+CE+P D  A+S  +VIVLV SQ P  + ++L E HRACIYTVPKHI 
Sbjct: 405 ISIAAFAKKIVSQCESPHDAFALS--HVIVLVTSQAPSALVLVLAELHRACIYTVPKHIQ 462

Query: 470 FS 471
           +S
Sbjct: 463 YS 464

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463209|ref|XP_003601886.1| Nucleoporin GLE1 [Medicago truncatula] gi|355490934|gb|AES72137.1| Nucleoporin GLE1 [Medicago truncatula]

 Score =  347 bits (889), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 225/469 (47%), Positives = 296/469 (63%), Gaps = 73/469 (15%)

Query: 25  WSFDALLSELNSLETRL--NASSKPVPFTKTKSREIS-TGKSVESNARAFVIRVSDDELE 81
           WSFDAL+SELN+LE  L  N+S+ P+ F +T S  ++ +G+      R FV R  + E +
Sbjct: 21  WSFDALVSELNALENNLSANSSTPPLHFHQTTSSRVNLSGRKEIEKGRRFVFRAPEYETD 80

Query: 82  N-DNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVE 140
           + D++ K   V +      K FTCD +YLS+SDDSD + AL  + YLM++VG  +GAL+E
Sbjct: 81  SEDDDDKALVVSDTG----KHFTCDEIYLSDSDDSDVESALEVQPYLMNKVGEVEGALIE 136

Query: 141 LTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKI 200
           LTH HQL V + IRN IS LE  L++E++ S S+L +VEK +D R+E+D+K DT YQR+I
Sbjct: 137 LTHDHQLRVNDGIRNKISALEIALLNESQNSISSLLRVEKFKDTRQELDKKFDTQYQRQI 196

Query: 201 AEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRK-----------------ERALQ 243
           AEALDN LTAVQ+D EL+SQIEERKIRSDAAYEEAKRK                 E  L+
Sbjct: 197 AEALDNQLTAVQQDRELRSQIEERKIRSDAAYEEAKRKVALQEEKQQQEKAKAEAEAKLK 256

Query: 244 EEKIRQEKVKAE--AEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQD 301
            E+++Q  ++AE  A M+AK       +AA+EAEKRA   AAE+ A ENSK +T+GV+Q+
Sbjct: 257 AEEVKQAALEAEKKAVMEAK------TKAAMEAEKRA---AAEKNAVENSKTVTSGVTQE 307

Query: 302 GACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSL 361
            A       SS +                    RA  SA NIE  RLQKLKEL E NQ +
Sbjct: 308 TA-------SSYV-------------------YRAAASASNIEHGRLQKLKELYERNQVV 341

Query: 362 KLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLATFSKKVVS 421
           + SS +D++ +E DISR          N+R+KASELVK+LN+  CPQS S+    KKVV 
Sbjct: 342 RSSSTQDYTRHESDISR----------NIRSKASELVKLLNDHQCPQSFSVEMLVKKVVL 391

Query: 422 RCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVF 470
            C +P  +   +   VIVL+ SQVP VMDILL E H AC+YTVPKH+V+
Sbjct: 392 SCASP-ASAPFAIASVIVLITSQVPYVMDILLAELHTACLYTVPKHLVY 439

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	495
TAIR|locus:2031835	611	GLE1 [Arabidopsis thaliana (ta	0.812	0.657	0.404	1.8e-71
TAIR|locus:504955347	221	AT4G05523 "AT4G05523" [Arabido	0.296	0.665	0.350	7.4e-13

TAIR|locus:2031835 GLE1 [Arabidopsis thaliana (taxid:3702)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 175/433 (40%), Positives = 248/433 (57%)

Query:     1 MGAIKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREIS 59
             MG + LE  CP+ VDGI+IDPEP+W+F++L++E+ S+E +LN  S  P P T T  R   
Sbjct:     1 MGIV-LEPPCPKSVDGISIDPEPNWNFESLVAEIASVEKKLNGFSMYPQPITNTTLR--- 56

Query:    60 TGKSVESNARAFVIRVSDDELEND-----NERKGEEVHNGSLVAVKRFTCDALYLSEXXX 114
              G+        FV+ VS+DE+E+D     ++ + EE H+    A KRF CD LYLS+   
Sbjct:    57 MGR----RGGGFVMHVSEDEMESDEGEESDDEEEEEDHSQICTAGKRFACDELYLSDESD 112

Query:   115 XXXXVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSA 174
                        Y+M+++GLA+ AL E+ + HQ  +K++IRN +S +ET++++E E S SA
Sbjct:   113 EEFDHE---PEYMMNKLGLAESALYEVINDHQTEIKDDIRNQVSVVETEIMNEIETSLSA 169

Query:   175 LAQVXXXXXXXXXXXXXXXTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDXXXXX 234
             +A+V                 YQRK+AEALD HLTAVQR+H++KSQIEERKIRS+     
Sbjct:   170 IARVEKYSETRKEVERKLDLQYQRKVAEALDTHLTAVQREHKIKSQIEERKIRSEEAQEE 229

Query:   235 XXXXXXXLQEEKIRQEKVKAEAEMQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSKRI 294
                     QEEKIRQEK +AEA+M                               + K  
Sbjct:   230 ARRKERAHQEEKIRQEKARAEAQM----LAKIRAEEEKKEVERKAAREVAEKEVADRKAA 285

Query:   295 TAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKEL 354
                +++  A       SS  + AQ+ G+          ++RA ESAL +E  RL+KL+EL
Sbjct:   286 EQKLAEQKAVIESVTGSSATSNAQAGGN----------SIRAAESALILENHRLKKLEEL 335

Query:   355 DEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLCPQSISLAT 414
             +  NQSLK  SNE+FS +EK I R+IRQI G KD+V  K +++VKI  +P CP SIS+A 
Sbjct:   336 ETTNQSLKSRSNENFSSFEKHIGRVIRQISGTKDSVSGKINDIVKIFKDPRCPVSISIAA 395

Query:   415 FSKKVVSRCETPD 427
             F+KK+V+  E P+
Sbjct:   396 FAKKMVTTKEKPN 408

GO:0005634 "nucleus" evidence=ISM

GO:0005643 "nuclear pore" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005635 "nuclear envelope" evidence=IDA

GO:0006312 "mitotic recombination" evidence=RCA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

GO:0048316 "seed development" evidence=IMP

TAIR|locus:504955347 AT4G05523 "AT4G05523" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 7.4e-13, P = 7.4e-13
 Identities = 60/171 (35%), Positives = 91/171 (53%)

Query:    10 CPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASSK-PVPFTKTKSREISTGKSVESNA 68
             CP+ V+G + DPEP+ SFD L+SE  S E +LNA +K   PFTKT SR       +    
Sbjct:     9 CPKSVEGFSYDPEPNRSFDRLVSETESFEKKLNAFTKFHQPFTKTTSRT-----DI---- 59

Query:    69 RAFVIRVSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSEXXXXXXXVALGGESYLM 128
              AFV+RVS+D++++D + +  +  +     +   TCD LYLS+       +    E  +M
Sbjct:    60 -AFVMRVSEDDMDSDEDVENNDQQDKEESQI--CTCDDLYLSDDDEFDHEL----EYTIM 112

Query:   129 DEVG--LADGA-LVELTH--QHQLGVKE-EIRNLIS-TLETQLISENEQSN 172
             +++G  LA+     + T   Q+Q+ V E EIRN I   L    + E  + N
Sbjct:   113 NKMGPALAENDHQTKSTEDIQNQVSVVEKEIRNEIERALSAIALVEKYREN 163

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	emb1745	emb1745 (embryo defective 1745); embryo defective 1745 (emb1745); FUNCTIONS IN- molecular_function unknown; INVOLVED IN- embryonic development ending in seed dormancy; LOCATED IN- nuclear pore; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- GLE1-like (InterPro-IPR012476); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G05523.1); Has 32122 Blast hits to 20275 proteins in 1392 species- Archae - 166; Bacteria - 5743; Metazoa - 12337; Fungi - 2633; Plants - 1041; Viruses - 221; Other Eukaryotes - 9981 (source- NCBI B [...] (611 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G80670	transducin family protein / WD-40 repeat family protein; This gene is predicted to encode a pro [...] (349 aa)					•				0.819
	AT1G75340	zinc finger (CCCH-type) family protein; zinc finger (CCCH-type) family protein; FUNCTIONS IN- z [...] (435 aa)					•				0.819
	MEE22	MEE22 (MATERNAL EFFECT EMBRYO ARREST 22); Encodes a novel protein of unknown function that is e [...] (1297 aa)				•			•		0.807
	AT5G40600	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; LOCATED IN- endomem [...] (306 aa)							•		0.788
	emb1353	emb1353 (embryo defective 1353); embryo defective 1353 (emb1353); FUNCTIONS IN- molecular_funct [...] (388 aa)							•		0.788
	emb2739	emb2739 (embryo defective 2739); embryo defective 2739 (emb2739); FUNCTIONS IN- molecular_funct [...] (508 aa)							•		0.788
	emb2204	emb2204 (embryo defective 2204); embryo defective 2204 (emb2204); FUNCTIONS IN- molecular_funct [...] (329 aa)							•		0.788
	AT1G04590	unknown protein; FUNCTIONS IN- molecular_function unknown; EXPRESSED IN- 23 plant structures; E [...] (384 aa)							•		0.788
	TTN10	TTN10 (TITAN 10); This gene is predicted to encode a PSF3 component of the GINS complex. This c [...] (185 aa)							•		0.784
	emb1879	emb1879 (embryo defective 1879); embryo defective 1879 (emb1879); FUNCTIONS IN- molecular_funct [...] (497 aa)							•		0.780

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	495
pfam07817	249	pfam07817, GLE1, GLE1-like protein	7e-27
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	4e-06
TIGR02794	346	TIGR02794, tolA_full, TolA protein	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	3e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	4e-05
TIGR02794	346	TIGR02794, tolA_full, TolA protein	5e-05
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	3e-04
PRK05035	695	PRK05035, PRK05035, electron transport complex pro	5e-04
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
COG5269	379	COG5269, ZUO1, Ribosome-associated chaperone zuoti	0.002
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.003
PRK09510	387	PRK09510, tolA, cell envelope integrity inner memb	0.004
PRK12472	508	PRK12472, PRK12472, hypothetical protein; Provisio	0.004
COG3064	387	COG3064, TolA, Membrane protein involved in colici	0.004

>gnl|CDD|219595 pfam07817, GLE1, GLE1-like protein

 Score =  108 bits (272), Expect = 7e-27
 Identities = 40/176 (22%), Positives = 69/176 (39%), Gaps = 20/176 (11%)

Query: 330 LQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN 389
            ++ +   +SA+ +   R  +LK+L    +          S     ++R+  ++  L   
Sbjct: 1   YKNKIEQIKSAVKLPLNRDPELKKLRFTLKRKINPKFGQLSNSSSQLARITNKLSQL--- 57

Query: 390 VRTKASELVKILNNPLCPQSISLATFSKKVVSRCETP---DDNVAMSCGYVIVLVASQVP 446
                  +    N+        L  F+KK+VS+ ET        A     V +L+ SQ P
Sbjct: 58  -------ISVAKNDHPLAYKWILNFFAKKIVSQAETEVAVKPEAAFPLAAVALLLLSQFP 110

Query: 447 QVMDILLGEFHRACIYTVPKHIVFS------EFRLHLNQKRLTTKLL-DTVRKMER 495
           +  D+LL   H+ C Y VPKH  ++      + R  +  KR       D    +ER
Sbjct: 111 EFGDLLLARLHKKCPYVVPKHPGYTCSIDTEDGRKRMGYKRTDGGKWEDETSYLER 166

The members of this family are sequences that are similar to the human protein GLE1. This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm. Length = 249

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 7/121 (5%)

Query: 175 LAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHE---LKSQIEERKIRSDA- 230
           L Q+EK+R   +E  +K      ++ A        A  +       K++ E ++  + A 
Sbjct: 103 LKQLEKERLAAQE-QKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAK 161

Query: 231 -AYEEAKRKERALQEEKIRQE-KVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAA 288
            A  EAK+K  A   +K   E K KAEAE  AK  AE  K+A  EA+K+AA EA ++ AA
Sbjct: 162 KAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAA 221

Query: 289 E 289
           E
Sbjct: 222 E 222

Length = 387

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 28/98 (28%), Positives = 50/98 (51%), Gaps = 1/98 (1%)

Query: 197 QRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAA-YEEAKRKERALQEEKIRQEKVKAE 255
           Q+K+ +  +        +   + ++E+R     AA   E   K+   ++++  + K K  
Sbjct: 70  QKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQA 129

Query: 256 AEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKR 293
           AE +AK  AE  K+A  EA+K+A +EA  + AAE  K+
Sbjct: 130 AEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKK 167

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.4 bits (113), Expect = 1e-05
 Identities = 42/272 (15%), Positives = 97/272 (35%), Gaps = 9/272 (3%)

Query: 134 ADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKND 193
            + AL+    +      EE+   +S LE +L    E+   A  ++E+ +    E+  + +
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284

Query: 194 TVYQRKIAEALDNHLTAVQRDHELK-SQIEERKIRSDAAYEEAKRKERALQEEKI-RQEK 251
                   +     L     + E + S + ER    +   EE + +   L+E+    +E+
Sbjct: 285 ------ELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEE 338

Query: 252 VKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDS 311
           ++    +  +L    A+    + E      A   E  E  + +   +++  A   +  + 
Sbjct: 339 LEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398

Query: 312 SVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSG 371
                 +         +  +      E    +E +  +   EL+E N+ L+    E    
Sbjct: 399 LEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELE-ELEEQLEE 457

Query: 372 YEKDISRLIRQIRGLKDNVRTKASELVKILNN 403
               +  L R++  L++ ++    EL  +   
Sbjct: 458 LRDRLKELERELAELQEELQRLEKELSSLEAR 489

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 43/254 (16%), Positives = 96/254 (37%), Gaps = 19/254 (7%)

Query: 150 KEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLT 209
            EE    I  L+++L    E+      ++ + ++   E++ +   + + ++ E  +    
Sbjct: 262 LEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLL-RERLEELENELEE 320

Query: 210 AVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKR 269
             +R  ELK +IE  K       EE +     L++     E+ K E E +     EE + 
Sbjct: 321 LEERLEELKEKIEALK----EELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376

Query: 270 AALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKK 329
                 +  A+  AE     N               R+ +        +     S+  + 
Sbjct: 377 LFEALREELAELEAELAEIRNELEELK---------REIESLE-----ERLERLSERLED 422

Query: 330 LQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN 389
           L+  ++  E+ L   Q  L++L E  EE +       +     E++++ L  +++ L+  
Sbjct: 423 LKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKE 482

Query: 390 VRTKASELVKILNN 403
           + +  + L ++   
Sbjct: 483 LSSLEARLDRLEAE 496

Length = 1163

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 28/122 (22%), Positives = 46/122 (37%)

Query: 223 ERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEA 282
           ++K        EA+ K +A  + K + E+ KA+AE      A EA   A      AA   
Sbjct: 165 KKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAE 224

Query: 283 AEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALN 342
           AER+A E       G++      +Q       AG++     +   + +Q  +    S   
Sbjct: 225 AERKADEAELGDIFGLASGSNAEKQGGARGNAAGSEVDKYAAIIQQAIQQNLYDDPSFRG 284

Query: 343 IE 344
             
Sbjct: 285 KT 286

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 167 ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKI 226
           E +   +   +  +    +    R       ++  +A        ++  E K++      
Sbjct: 74  EQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAK 133

Query: 227 RSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAERE 286
               A  E K KE A   +K  +E+ KA+A  +AK +A EAK+ A EAE +A  EA  + 
Sbjct: 134 AKAEAEAEKKAKEEA---KKQAEEEAKAKAAAEAKKKAAEAKKKA-EAEAKAKAEAKAKA 189

Query: 287 AAENSKR 293
            AE +K 
Sbjct: 190 KAEEAKA 196

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 49/250 (19%), Positives = 100/250 (40%), Gaps = 11/250 (4%)

Query: 151 EEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTA 210
           +E+   ++ LE QL    E+  S   ++    D+  E+ R+       ++   L+     
Sbjct: 670 KELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQ-----LEELERQLEELKRE 724

Query: 211 VQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIR-QEKVKAEAEMQAKLRAEEAKR 269
           +    E   Q++ R    +   EE + +   LQE     +E++++  E  AKL+ E  + 
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEEL 784

Query: 270 AALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKK 329
                  +   E  E E  E  +R+ A   +      +  +       Q      +  ++
Sbjct: 785 EEKRQALQEELEELEEELEEAERRLDALERE-----LESLEQRRERLEQEIEELEEEIEE 839

Query: 330 LQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN 389
           L+  +   E  L   +K L++LKE  EE ++ K    ++    E++   L  ++R L+  
Sbjct: 840 LEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESE 899

Query: 390 VRTKASELVK 399
           +     E+ K
Sbjct: 900 LAELKEEIEK 909

Length = 1163

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 45.9 bits (108), Expect = 4e-05
 Identities = 46/187 (24%), Positives = 92/187 (49%), Gaps = 9/187 (4%)

Query: 197  QRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAE- 255
             +K A+A        ++  E K + EE K ++D   + A  K++A + +K  +EK KA+ 
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435

Query: 256  --AEMQAKLRAEEAKRAALEAEK--RAAKEAAEREAAENSKRITAGVSQDGACGRQPDDS 311
               + +   +A+EAK+ A EA+K   A K+A E + A+ +K+      +     ++ +++
Sbjct: 1436 AKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEA 1495

Query: 312  SVIA----GAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNE 367
               A     A     ++D  KK + A +A E+    E K+  + K+ +E+ ++ +L   E
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAE 1555

Query: 368  DFSGYEK 374
            +    E+
Sbjct: 1556 ELKKAEE 1562

Length = 2084

>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein

 Score = 45.2 bits (107), Expect = 5e-05
 Identities = 29/88 (32%), Positives = 53/88 (60%), Gaps = 4/88 (4%)

Query: 212 QRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQE---KVKAEAEMQAKLRAEEAK 268
           Q++ E ++  E+   +++ A ++A+ K++  +E K +Q    K KAEAE + K + E  K
Sbjct: 91  QKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKK 150

Query: 269 RAALEAEKRAAKEAAEREAAENSKRITA 296
           +A  EA+ +AA   A+++AAE  K+  A
Sbjct: 151 QAEEEAKAKAA-AEAKKKAAEAKKKAEA 177

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB [Transport and binding proteins, Other, Cellular processes, Pathogenesis]. Length = 346

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 43.6 bits (102), Expect = 3e-04
 Identities = 57/234 (24%), Positives = 103/234 (44%), Gaps = 15/234 (6%)

Query: 167  ENEQSNSALAQVEKDRDM---RREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEE 223
              E  N AL + E+ +     R E   K     ++  AE       A  +  ELK   EE
Sbjct: 1572 AEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEE 1631

Query: 224  RKIRSDAAYEEAKRKERALQ------EEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKR 277
            +K       +EA+ K++A +      E KI+  +   +AE + K +AEEAK+A  + +K 
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAE-EDKKKAEEAKKAEEDEKKA 1690

Query: 278  A---AKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAV 334
            A    KEA E + AE  K+  A   +     ++ ++ + I   +++    +  KK + A 
Sbjct: 1691 AEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750

Query: 335  RATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKD 388
            +  E    I   + ++ K+ +E  +  +    E+    E+D  R +   + +KD
Sbjct: 1751 KDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD--EEDEKRRMEVDKKIKD 1802

Length = 2084

>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC; Provisional

 Score = 42.2 bits (100), Expect = 5e-04
 Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 24/128 (18%)

Query: 218 KSQIEERKIRSDAAYEEAKRKERALQ---EEKIRQEKVKAEAEMQAKLRAEEAKRAALEA 274
           K++I   +       +E K+ E A       + R E+ KA        R    K+AA   
Sbjct: 435 KAEIRAIE-------QEKKKAEEAKARFEARQARLEREKAA-------REARHKKAA--E 478

Query: 275 EKRAAKEAAEREAAENSKRITAGVSQDGAC--GRQPDDSSVIAGAQSRGSRSDGTKKLQS 332
            + A  + A   A    K   A  +Q      G +PD+S+VIA   +R +R    +  Q+
Sbjct: 479 ARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDNSAVIA---AREARKAQARARQA 535

Query: 333 AVRATESA 340
             +A  +A
Sbjct: 536 EKQAAAAA 543

Length = 695

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 21/77 (27%), Positives = 42/77 (54%)

Query: 220 QIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAA 279
           Q+E+ ++ +    ++A+   +    ++ + E+  A+A   AK +AE   + A  A K+AA
Sbjct: 105 QLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAA 164

Query: 280 KEAAEREAAENSKRITA 296
            EA ++  AE +K+  A
Sbjct: 165 AEAKKKAEAEAAKKAAA 181

Length = 387

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 39/171 (22%), Positives = 79/171 (46%), Gaps = 7/171 (4%)

Query: 177  QVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAK 236
            + +K  + ++  + K      +K  EA      A ++    K + EE K  ++AA  EA+
Sbjct: 1294 EAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353

Query: 237  RKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITA 296
                  +  + + E  + + E +AK +A+ AK+ A   EK+ A EA  ++ AE  K+   
Sbjct: 1354 AAADEAEAAEEKAEAAEKKKE-EAKKKADAAKKKA--EEKKKADEA--KKKAEEDKKKAD 1408

Query: 297  GVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKR 347
             + +  A  ++ D++     A+ +    +  KK + A +A E+    E+ +
Sbjct: 1409 ELKKAAAAKKKADEAK--KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457

Length = 2084

>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)

Query: 180 KDRDMRREMDRKNDTVYQRKIAEALDNHL------TAVQRDHELKS---QIEERKIRSDA 230
           ++RD +R  + KN     +   +  DN         A +RD  +KS   Q +E K     
Sbjct: 191 EERDRKRYSEAKNREKRAKL--KNQDNARLKRLVQIAKKRDPRIKSFKEQEKEMKKIRKW 248

Query: 231 AYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAEN 290
             E   R +     +   + K KAE E +A   A   K+ A E  K+A K   E++A +N
Sbjct: 249 EREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKM--EKKAIKN 306

Query: 291 SKR 293
           + +
Sbjct: 307 AAK 309

Length = 379

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 44/189 (23%), Positives = 82/189 (43%), Gaps = 11/189 (5%)

Query: 213  RDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAAL 272
            +  E K + EE K   +      ++ E A + E+ R E+V    E + K++AEEAK+A  
Sbjct: 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEE 1617

Query: 273  EAEK--RAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKL 330
               K     K   E++  E  K+  A   +     ++ ++ + I  A+      +  KK 
Sbjct: 1618 AKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKA 1677

Query: 331  QSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNV 390
            + A +A E     E+K  + LK+  EE +       E+    E +  +   +++  ++  
Sbjct: 1678 EEAKKAEED----EKKAAEALKKEAEEAKKA-----EELKKKEAEEKKKAEELKKAEEEN 1728

Query: 391  RTKASELVK 399
            + KA E  K
Sbjct: 1729 KIKAEEAKK 1737

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 45/194 (23%), Positives = 90/194 (46%), Gaps = 11/194 (5%)

Query: 167  ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKI 226
            E+ +   A+ + E+ +    E  +  +     +I +  +  +    R        E RK 
Sbjct: 1221 EDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKA 1280

Query: 227  RSDAAYEEAKRKERALQEEKIRQ-EKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAER 285
                  EE K+ + A + E+ ++ ++ K +AE   K  A+EAK+ A EA+K+A  +AA++
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKK--ADEAKKKAEEAKKKA--DAAKK 1336

Query: 286  EAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQ 345
            +A E  K   A  ++  A   + + +   A A  +  + +  KK  +A +  E     E+
Sbjct: 1337 KAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK-KKEEAKKKADAAKKKAE-----EK 1390

Query: 346  KRLQKLKELDEENQ 359
            K+  + K+  EE++
Sbjct: 1391 KKADEAKKKAEEDK 1404

Length = 2084

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 45/225 (20%), Positives = 99/225 (44%), Gaps = 12/225 (5%)

Query: 151  EEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTA 210
            +E++      +     + E+   A    +K  + ++  + K      +K A+A       
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340

Query: 211  VQRDHELKSQIEERKI-RSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKR 269
             ++  E      E     ++AA E+A+  E+  +E K + +  K +AE   K +A+EAK+
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE--EKKKADEAKK 1398

Query: 270  AALEAEKRA---AKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRS-- 324
             A E +K+A    K AA ++ A+ +K+      +     ++ +++     A+ +   +  
Sbjct: 1399 KAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1458

Query: 325  --DGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNE 367
              +  KK + A +A E+    E+ +  K  E  ++ +  K  ++E
Sbjct: 1459 AEEAKKKAEEAKKADEAKKKAEEAK--KADEAKKKAEEAKKKADE 1501

Length = 2084

>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein TolA; Provisional

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 6/89 (6%)

Query: 212 QRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAA 271
           QR  + + Q EE + +  A  E  K+    L++E++  ++ K +AE  AK  A + K+A 
Sbjct: 80  QRKKKEQQQAEELQQKQAAEQERLKQ----LEKERLAAQEQKKQAEEAAKQAALKQKQA- 134

Query: 272 LEAEKRAAKEAAEREAAENSKRITAGVSQ 300
            E     A  AA+ +A   +KR  A   +
Sbjct: 135 -EEAAAKAAAAAKAKAEAEAKRAAAAAKK 162

Length = 387

>gnl|CDD|237110 PRK12472, PRK12472, hypothetical protein; Provisional

 Score = 39.5 bits (92), Expect = 0.004
 Identities = 40/128 (31%), Positives = 55/128 (42%), Gaps = 27/128 (21%)

Query: 199 KIAEALDNHLTAVQRDHE-LKSQI---EERKIRSDAAYEEAKRKERALQEEKIRQEKVKA 254
           + A+       A  R+   LK+ +   E  K R+DA   E KR ++AL   K  + K +A
Sbjct: 204 RAADEAKTAAAAAAREAAPLKASLRKLERAKARADA---ELKRADKALAAAKTDEAKARA 260

Query: 255 E----------AEMQAKLRAE----EAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQ 300
           E          AE   +L       EAKRAA  A K AAK AA ++A       TA  + 
Sbjct: 261 EERQQKAAQQAAEAATQLDTAKADAEAKRAAAAATKEAAKAAAAKKAE------TAKAAT 314

Query: 301 DGACGRQP 308
           D     +P
Sbjct: 315 DAKLALEP 322

Length = 508

>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

 Score = 39.2 bits (91), Expect = 0.004
 Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 174 ALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYE 233
           A+ Q       ++   +K +   ++K  +  +        + E   Q+E+ ++++    +
Sbjct: 59  AVVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQK 118

Query: 234 EAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAAL-EAEKRAAKEAAEREAAENSK 292
           +A+  E+  Q E+ +QE+   +A  + K +AE AK  A  EA K  A   A+++A E +K
Sbjct: 119 QAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAK 178

Length = 387

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	495
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	100.0
PF07817	256	GLE1: GLE1-like protein; InterPro: IPR012476 The m	99.95
KOG2412	591	consensus Nuclear-export-signal (NES)-containing p	96.84
PTZ00121	2084	MAEBL; Provisional	96.8
PTZ00121	2084	MAEBL; Provisional	96.51
PTZ00266	1021	NIMA-related protein kinase; Provisional	96.36
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	94.76
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	94.63
PRK09510	387	tolA cell envelope integrity inner membrane protei	94.21
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	94.16
PRK09510	387	tolA cell envelope integrity inner membrane protei	94.12
TIGR02794	346	tolA_full TolA protein. TolA couples the inner mem	93.04
COG3064	387	TolA Membrane protein involved in colicin uptake [	92.9
PTZ00266	1021	NIMA-related protein kinase; Provisional	92.89
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	92.64
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	89.12
PF05262	489	Borrelia_P83: Borrelia P83/100 protein; InterPro:	88.28
KOG4364	811	consensus Chromatin assembly factor-I [Chromatin s	85.08
KOG2140	739	consensus Uncharacterized conserved protein [Gener	83.31
KOG3054	299	consensus Uncharacterized conserved protein [Funct	81.95
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	81.12

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=100.00  E-value=3.8e-66  Score=539.45  Aligned_cols=446  Identities=34%  Similarity=0.480  Sum_probs=382.5

Q ss_pred             cccccCCCCccCccccCCCCCCChHHHHHHHHHHHHHhccCC-CCcccccccccccccCccccccCcceEEEeccccccc
Q 011038            4 IKLELRCPQKVDGIAIDPEPDWSFDALLSELNSLETRLNASS-KPVPFTKTKSREISTGKSVESNARAFVIRVSDDELEN   82 (495)
Q Consensus         4 ~~~e~~cp~~~~~~~~dp~p~ws~~~l~~el~~le~~~~~~~-~~~p~tk~~s~~~~~~~~~~~~~~~fvmrv~~~~~e~   82 (495)
                      +.|+..||.+++|++|||+|+|+|.||++++.|.+.+||+++ +|+|+|.+.-+...       ++..|||.|++|+++.
T Consensus         3 ~pl~ep~p~s~~~~~id~epn~~fpdl~a~~as~~~~l~~~gk~~~~~t~~~v~d~~-------~~~~~~~~~~e~e~~~   75 (591)
T KOG2412|consen    3 IPLEEPCPKSVDGISIDPEPNWNFPDLVAEIASVEKKLNGFGKYPQPITNTTVRDGR-------RGGGFVMHVSEDEMES   75 (591)
T ss_pred             CCCCCCCCCCcccccCCCCCCCCchhHHHHhhhhhhhhcccCCCccHHHHHHHHhhh-------ccCCccchhHHHHHHh
Confidence            568999999999999999999999999999999999999999 99999887755433       5788999999999975


Q ss_pred             ccc-----ccccccccccccccccccccccccCCCCCCcccccccCchhhhhhhhhhhhhHHHHhhhcccchhHHHHHHH
Q 011038           83 DNE-----RKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYLMDEVGLADGALVELTHQHQLGVKEEIRNLI  157 (495)
Q Consensus        83 ~d~-----~~~e~~~~~~~~~~~~f~c~~l~ls~~~~sd~~~~~~~~~~lm~k~~~~e~~l~el~~~h~~~v~eeir~~~  157 (495)
                      +.+     ...|+.+++.|..|++|+|+.||++|.++.+.++...   +.|+++|+..++    .++|++.++.++|+++
T Consensus        76 ~~~~~sq~~l~e~~~s~~~~a~t~m~~~qL~~~~~~~~~~~~e~~---~~l~~L~~~~~~----~~q~~~~~~~~~~~ki  148 (591)
T KOG2412|consen   76 DEGEESQDELEEEDHSQKCTAGTRMACAQLYLSDESDEEFDHENE---QDLNKLGLKESA----INQRQTEIKSDIRAKI  148 (591)
T ss_pred             cccccccCcccCcchhHhhhccchhHHHHHHHHHHhhhhhhcchh---hhHHHHHHhhcc----chhhhHhHHhhhhhhh
Confidence            553     3448889999999999999999999988888766655   899999999988    6999999999999999


Q ss_pred             HHHHHHHHH-HHhhhhHHHHhhHHhHHhHHHHhhhhcHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhhhHHHHHHHH
Q 011038          158 STLETQLIS-ENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAK  236 (495)
Q Consensus       158 s~le~~l~~-E~q~s~sa~arveKy~e~r~e~~r~~~~~~qr~~aea~~~~~~~~qrd~e~~sq~eer~~r~~aA~EEAk  236 (495)
                      +.+..-..+ ++..+++.+..++||.++|.+..+|+ .++|+++...+|+|++.++|.|.+.+||.+|++++++..+||+
T Consensus       149 ~~~~~pea~~~~~~n~e~~~l~~~~~e~~~~~~~r~-~e~Q~qv~qsl~~el~~i~~~~q~~eqi~~~~~~~e~kr~Eae  227 (591)
T KOG2412|consen  149 LNSPLPEANQEIETNAENIRLVEKLSETRKEVKRRL-LEEQNQVLQSLDTELQAIQREKQRKEQIRERKERSEEKREEAE  227 (591)
T ss_pred             hcCCChHHHHHHHhhHHHHHhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhH
Confidence            999888777 89999999999999999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccCCcCCCCCCcchhhhc
Q 011038          237 RKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAG  316 (495)
Q Consensus       237 Rke~A~qEEk~Rqekak~EaE~~ak~~aeeak~a~~E~~rkaa~EAa~ke~ae~~~~~~~~~~~~~a~~~~a~~~~~~~~  316 (495)
                      |++++.|||+.+++.+.++.++.++.|+++.|   +|.++|.+.++++|++....+.     .++     .|+.+.....
T Consensus       228 rk~~~~qEe~Rqk~d~~~~~~eqekiR~~eek---qeee~ke~e~~~~k~~q~~~~~-----eek-----~a~qk~~~~~  294 (591)
T KOG2412|consen  228 RKRRAHQEELRQKEDEEAELQEQEKIRAEEEK---QEEERKEAEEQAEKEVQDPKAH-----EEK-----LAEQKAVIEK  294 (591)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCchhc-----ccc-----cccccccccc
Confidence            99999999999999999999999999999888   3446888988888877665433     222     3444444433


Q ss_pred             cccCCCCCcccccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhhhhhhhhhhccchhH-HHhHHH
Q 011038          317 AQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN-VRTKAS  395 (495)
Q Consensus       317 ~~~~g~~~~~~~~s~~~~raa~sAl~~E~~Rlk~LkEL~e~n~~LK~~lnke~~d~rRqI~K~VgQIS~tkeq-Vk~Ks~  395 (495)
                      ++.... ++.+.---....++.|.++.+..+.++..+|+.++..           +.|.||..||||+.+..| +.+...
T Consensus       295 ~~~~~~-~ds~m~w~~~d~i~q~k~d~v~pi~~kd~~lk~~~~~-----------~kr~in~~~~qis~~~~q~L~qI~d  362 (591)
T KOG2412|consen  295 VTTSSA-SDSQMFWNSQDAIAQSKLDLVNPILKKDEELKNYNQS-----------LKRAINPPFSQISKSNGQVLRQIFD  362 (591)
T ss_pred             ccCCch-hHHHhhhhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-----------HHhhcCCChhhhhhccHHHHHHHHH
Confidence            331111 1111111134688999999999999988887776655           557888899999988888 777778


Q ss_pred             HHHHHhcCCCC---ch--HHHHHHHHHHHHhhhcC---CCCCCchhhHHHHHHHHhhcccHHHHHHHHhhhhcccccccc
Q 011038          396 ELVKILNNPLC---PQ--SISLATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKH  467 (495)
Q Consensus       396 ELvqiLn~pq~---P~--~fALnifAKKIISQ~Es---~a~s~AFalAeVIv~VaaQ~Pe~~DILLAkFHkvCpYTVPky  467 (495)
                      .|.+++++...   |+  .|++|+|||+.|+|.|+   .+|-.|||||+||+.+|+|||+|+|+|||+||+.|||+||+|
T Consensus       363 kl~s~~~~~~~~~~pl~~~~~~~~iaka~V~Q~Etev~~~PeaAfPla~V~l~i~~q~Pdv~dlllA~l~KkCP~~VPf~  442 (591)
T KOG2412|consen  363 KLDSLFGGIPDIVDPLAYDWCLNFIAKAFVKQAETEVASKPEAAFPLAKVILYIWSQFPDVGDLLLARLHKKCPYVVPFH  442 (591)
T ss_pred             HHHHHhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhCchHHHHHHHHHHhcCCcccccc
Confidence            88888876642   54  58999999999999999   555679999999999999999999999999999999999999


Q ss_pred             cchh--hhHhhhcccccch-hHHHH
Q 011038          468 IVFS--EFRLHLNQKRLTT-KLLDT  489 (495)
Q Consensus       468 i~~~--~~r~~~~~kr~~~-k~~~~  489 (495)
                      ++++  +|+--||||+.|+ ||++-
T Consensus       443 ~~~~~Eq~~k~mGyk~~d~nk~Eqn  467 (591)
T KOG2412|consen  443 IVNSTEQYQKMMGYKAWDSNKWEQN  467 (591)
T ss_pred             ccCcHHHHHHhhccccccccccccc
Confidence            9986  9999999999994 99964

>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT)

Probab=99.95  E-value=6.7e-29  Score=240.36  Aligned_cols=131  Identities=25%  Similarity=0.323  Sum_probs=102.2

Q ss_pred             ccccchhhhhhhhhhhhhhccchhHHHhHHHHHHHHhcCC--------------CCchHHHHHHHHHHHHhhhcC---CC
Q 011038          365 SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNP--------------LCPQSISLATFSKKVVSRCET---PD  427 (495)
Q Consensus       365 lnke~~d~rRqI~K~VgQIS~tkeqVk~Ks~ELvqiLn~p--------------q~P~~fALnifAKKIISQ~Es---~a  427 (495)
                      +++.+++++|+|+++||||+++..+++.++++|.++|++.              .+++.|+||+|||+||+|+|+   ..
T Consensus        22 lKk~~~~~kr~I~~~vgQls~~~~qi~~i~~~i~~ll~~~~~~~~~~~~~~~~~~~~~~~~l~~lAk~iv~Q~e~ev~~~  101 (256)
T PF07817_consen   22 LKKLRFDLKRKINPKVGQLSNSSSQINRIINQISNLLSGQPVKSNDLQQSKNDHPLAYKYLLNFLAKKIVSQAETEVSAN  101 (256)
T ss_dssp             HHHHHHHHHHHHCCHHHC--SBHHHHHHHHHHHHHH----------HHTTTT-SHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHhhhhCcCcHhhccCcHHHHHHHHHHHHHHhhhhhhchhhhhhhccCCchHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5567799999999999999999999999999999995332              224568999999999999999   35


Q ss_pred             CCCchhhHHHHHHHHhhcccHHHHHHHHhhhhcccccccccch------hhhHhhhcccccchhHHHHHHhhhC
Q 011038          428 DNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVF------SEFRLHLNQKRLTTKLLDTVRKMER  495 (495)
Q Consensus       428 ~s~AFalAeVIv~VaaQ~Pe~~DILLAkFHkvCpYTVPkyi~~------~~~r~~~~~kr~~~k~~~~~~~~~~  495 (495)
                      ++.|||||+|++.|++++|+|+|||||+||++|||+||+|+++      ++||.+||||+.+++||++..-++|
T Consensus       102 ~~~A~PlA~v~~~l~~~~p~~~dillA~l~k~Cp~~vP~~~~~~~~~~~e~~~k~lGyk~~~~~~E~~~~y~~R  175 (256)
T PF07817_consen  102 PESAFPLARVAVQLWSQHPEFGDILLARLHKKCPYLVPKYPGFTCDQSTEEYRKRLGYKRDDGGWESEDQYLKR  175 (256)
T ss_dssp             GGGHHHHHHHHHHHHHHSTCHHHHHHHHHHHH-GGGG----T-----SSHHHHHHTT--B-TTSB--HHHHHHH
T ss_pred             CchhhhHHHHHHHHHHcCCcHHHHHHHHHHHcCceeEeecCcccCCCCHHHHHHHcCCccCCCCccchHHHHHH
Confidence            5789999999999999999999999999999999999998864      7899999999999889998765554

This protein is localised at the nuclear pore complexes and functions in poly(A)+ RNA export to the cytoplasm []. ; GO: 0016973 poly(A)+ mRNA export from nucleus, 0005643 nuclear pore; PDB: 3PEV_B 3RRN_B 3PEU_B 3RRM_B.

>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]

Probab=96.84  E-value=0.012  Score=64.36  Aligned_cols=38  Identities=37%  Similarity=0.446  Sum_probs=22.5

Q ss_pred             HHHHHH-HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011038          217 LKSQIE-ERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAE  257 (495)
Q Consensus       217 ~~sq~e-er~~r~~aA~EEAkRke~A~qEEk~Rqekak~EaE  257 (495)
                      -++++| ||+.+.+   +|++|+..-++.++..||+.|++.+
T Consensus       220 e~kr~Eaerk~~~~---qEe~Rqk~d~~~~~~eqekiR~~ee  258 (591)
T KOG2412|consen  220 EEKREEAERKRRAH---QEELRQKEDEEAELQEQEKIRAEEE  258 (591)
T ss_pred             HhhhhhhHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            345555 4444443   6666665566666666777777555

>PTZ00121 MAEBL; Provisional

Probab=96.80  E-value=0.068  Score=64.22  Aligned_cols=67  Identities=18%  Similarity=0.304  Sum_probs=40.2

Q ss_pred             HHhHHHHhhhhcHHHHHHHHHHHHhhhhHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 011038          182 RDMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQE  250 (495)
Q Consensus       182 ~e~r~e~~r~~~~~~qr~~aea~~~~~~~~qrd~e~~sq~eer~~r~~aA~EEAkRke~A~qEEk~Rqe  250 (495)
                      .+.|++.+-+....+||.+-||.-.  ..+.|+.+.++..++|+.+..-..||++|.+.+.+.|..|.+
T Consensus      1112 ee~r~~ee~~~r~e~arr~eeARra--e~~Rr~EeaRKrEeaRraE~aRreEEaRr~EEaRraEeArr~ 1178 (2084)
T PTZ00121       1112 EEARKAEEAKKKAEDARKAEEARKA--EDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKA 1178 (2084)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666777777788888877632  344466666666666665555555666555544444433333

>PTZ00121 MAEBL; Provisional

Probab=96.51  E-value=0.35  Score=58.59  Aligned_cols=18  Identities=11%  Similarity=0.276  Sum_probs=8.7

Q ss_pred             hHHhHHHHhhhhcHHHHH
Q 011038          181 DRDMRREMDRKNDTVYQR  198 (495)
Q Consensus       181 y~e~r~e~~r~~~~~~qr  198 (495)
                      ..|+|+..+.|.+-+.+|
T Consensus      1130 ~eeARrae~~Rr~EeaRK 1147 (2084)
T PTZ00121       1130 AEEARKAEDARKAEEARK 1147 (2084)
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            345555555554444333

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=96.36  E-value=0.066  Score=62.64  Aligned_cols=10  Identities=30%  Similarity=0.973  Sum_probs=7.4

Q ss_pred             CChHHHHHHH
Q 011038           25 WSFDALLSEL   34 (495)
Q Consensus        25 ws~~~l~~el   34 (495)
                      ||||-++-||
T Consensus       227 WSLG~ILYEL  236 (1021)
T PTZ00266        227 WALGCIIYEL  236 (1021)
T ss_pred             HHHHHHHHHH
Confidence            7777777766

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=94.76  E-value=0.56  Score=54.03  Aligned_cols=57  Identities=40%  Similarity=0.484  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 011038          234 EAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAK-RAALEAEKRAAKEAAEREAAEN  290 (495)
Q Consensus       234 EAkRke~A~qEEk~Rqekak~EaE~~ak~~aeeak-~a~~E~~rkaa~EAa~ke~ae~  290 (495)
                      |-+|+|.-.++-++--|+.++++||..|.++||+. ++.+|.+++.+.|-.++-+.|+
T Consensus       936 ER~rrEaeek~rre~ee~k~~k~e~e~kRK~eEeqr~~qee~e~~l~~e~q~qla~e~  993 (1259)
T KOG0163|consen  936 ERKRREAEEKRRREEEEKKRAKAEMETKRKAEEEQRKAQEEEERRLALELQEQLAKEA  993 (1259)
T ss_pred             HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            33344433333344455667777888888877555 6666666766665554444433

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.63  E-value=0.45  Score=54.78  Aligned_cols=9  Identities=11%  Similarity=-0.038  Sum_probs=5.6

Q ss_pred             ccccccccc
Q 011038           99 VKRFTCDAL  107 (495)
Q Consensus        99 ~~~f~c~~l  107 (495)
                      .+.|++.|-
T Consensus       198 ~QlFNa~Dk  206 (1118)
T KOG1029|consen  198 RQLFNALDK  206 (1118)
T ss_pred             HHHhhhccc
Confidence            456776664

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=94.21  E-value=2.3  Score=45.52  Aligned_cols=8  Identities=13%  Similarity=0.293  Sum_probs=3.2

Q ss_pred             hhcccccc
Q 011038          458 RACIYTVP  465 (495)
Q Consensus       458 kvCpYTVP  465 (495)
                      +++||-+|
T Consensus       361 r~a~lP~p  368 (387)
T PRK09510        361 KTAKIPKP  368 (387)
T ss_pred             HcCCCCCC
Confidence            34444333

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=94.16  E-value=0.2  Score=57.43  Aligned_cols=62  Identities=31%  Similarity=0.392  Sum_probs=48.0

Q ss_pred             HhhhhHhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011038          205 DNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALE  273 (495)
Q Consensus       205 ~~~~~~~qrd~e~~sq~eer~~r~~aA~EEAkRke~A~qEEk~Rqekak~EaE~~ak~~aeeak~a~~E  273 (495)
                      -+|++++|+--+.+.+.|||+.|.+   ||-.|+  ..+|++.|.++++++.|  +|.+..+.++.+.|
T Consensus       213 ~Kgv~~~qe~La~~qe~eE~qkree---EE~~r~--eeEEer~~ee~E~~~eE--ak~kkKekekek~e  274 (1064)
T KOG1144|consen  213 PKGVRAMQEALAKRQEEEERQKREE---EERLRR--EEEEERRREEEEAQEEE--AKEKKKEKEKEKKE  274 (1064)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            4689999999999999999999987   655555  57778888888888888  66666666655555

>PRK09510 tolA cell envelope integrity inner membrane protein TolA; Provisional

Probab=94.12  E-value=2.9  Score=44.71  Aligned_cols=8  Identities=25%  Similarity=0.401  Sum_probs=3.4

Q ss_pred             hhhhhhhh
Q 011038          127 LMDEVGLA  134 (495)
Q Consensus       127 lm~k~~~~  134 (495)
                      .|=-.|.|
T Consensus        53 VmvD~~~v   60 (387)
T PRK09510         53 VMVDPGAV   60 (387)
T ss_pred             eecChHHH
Confidence            34344444

>TIGR02794 tolA_full TolA protein

Probab=93.04  E-value=2.5  Score=44.24  Aligned_cols=11  Identities=27%  Similarity=0.383  Sum_probs=4.3

Q ss_pred             HHHHHHHHHHH
Q 011038          277 RAAKEAAEREA  287 (495)
Q Consensus       277 kaa~EAa~ke~  287 (495)
                      |+++|+.+|+.
T Consensus       180 k~kaea~~ka~  190 (346)
T TIGR02794       180 KAKAEAEAKAK  190 (346)
T ss_pred             HHHHHHHHHHH
Confidence            33334433333

TolA couples the inner membrane complex of itself with TolQ and TolR to the outer membrane complex of TolB and OprL (also called Pal). Most of the length of the protein consists of low-complexity sequence that may differ in both length and composition from one species to another, complicating efforts to discriminate TolA (the most divergent gene in the tol-pal system) from paralogs such as TonB. Selection of members of the seed alignment and criteria for setting scoring cutoffs are based largely conserved operon struction. //The Tol-Pal complex is required for maintaining outer membrane integrity. Also involved in transport (uptake) of colicins and filamentous DNA, and implicated in pathogenesis. Transport is energized by the proton motive force. TolA is an inner membrane protein that interacts with periplasmic TolB and with outer membrane porins ompC, phoE and lamB.

>COG3064 TolA Membrane protein involved in colicin uptake [Cell envelope biogenesis, outer membrane]

Probab=92.90  E-value=3  Score=44.08  Aligned_cols=7  Identities=14%  Similarity=-0.201  Sum_probs=2.8

Q ss_pred             hhcccch
Q 011038          143 HQHQLGV  149 (495)
Q Consensus       143 ~~h~~~v  149 (495)
                      -|-++-+
T Consensus        55 VDpgav~   61 (387)
T COG3064          55 VDPGAVV   61 (387)
T ss_pred             eCcHHHH
Confidence            3444433

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=92.89  E-value=0.98  Score=53.33  Aligned_cols=39  Identities=31%  Similarity=0.352  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011038          238 KERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEK  276 (495)
Q Consensus       238 ke~A~qEEk~Rqekak~EaE~~ak~~aeeak~a~~E~~r  276 (495)
                      +|+..++||+|+|++++|.|...+++.|.++..++|.||
T Consensus       473 rer~er~erer~Erer~erEr~erer~erer~~r~e~er  511 (1021)
T PTZ00266        473 RERMERIERERLERERLERERLERDRLERDRLDRLERER  511 (1021)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445556666666665554444444444433344333

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.64  E-value=8.7  Score=44.90  Aligned_cols=9  Identities=22%  Similarity=0.198  Sum_probs=3.6

Q ss_pred             hhhhhhhhh
Q 011038          372 YEKDISRLI  380 (495)
Q Consensus       372 ~rRqI~K~V  380 (495)
                      ++.++-..+
T Consensus       477 ~~~q~e~~i  485 (1118)
T KOG1029|consen  477 VTKQRELMI  485 (1118)
T ss_pred             hhhHHHHHH
Confidence            444444433

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=89.12  E-value=42  Score=39.68  Aligned_cols=11  Identities=9%  Similarity=0.271  Sum_probs=5.9

Q ss_pred             chhhhhhhhhh
Q 011038          369 FSGYEKDISRL  379 (495)
Q Consensus       369 ~~d~rRqI~K~  379 (495)
                      +..++-+|+.+
T Consensus      1072 yaeLRDtINTS 1082 (1259)
T KOG0163|consen 1072 YAELRDTINTS 1082 (1259)
T ss_pred             HHHHHHhhccc
Confidence            34455566554

>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins

Probab=88.28  E-value=14  Score=40.95  Aligned_cols=13  Identities=31%  Similarity=0.542  Sum_probs=8.0

Q ss_pred             cCcceEEEecccc
Q 011038           67 NARAFVIRVSDDE   79 (495)
Q Consensus        67 ~~~~fvmrv~~~~   79 (495)
                      .++-||+|+=|..
T Consensus        48 ~~~y~ii~~vd~~   60 (489)
T PF05262_consen   48 YGRYYIIHAVDPE   60 (489)
T ss_pred             cCcEEEEEecCcc
Confidence            3677777765443

>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]

Probab=85.08  E-value=18  Score=41.60  Aligned_cols=11  Identities=36%  Similarity=0.199  Sum_probs=5.2

Q ss_pred             ccchhHHHHHH
Q 011038          481 RLTTKLLDTVR  491 (495)
Q Consensus       481 r~~~k~~~~~~  491 (495)
                      +|++++--.|+
T Consensus       733 ~Pk~rlcw~V~  743 (811)
T KOG4364|consen  733 VPKTRLCWKVR  743 (811)
T ss_pred             CCcchhHHHHH
Confidence            44455444444

>KOG2140 consensus Uncharacterized conserved protein [General function prediction only]

Probab=83.31  E-value=3.8  Score=46.08  Aligned_cols=82  Identities=17%  Similarity=0.347  Sum_probs=58.1

Q ss_pred             ccccchhhhhhhhhhhhhhccchhHHHhHHHHHH--HHhcCCCCchHHHHHHHHHHHHhhhcCCCCCCchhhHHHHHHHH
Q 011038          365 SNEDFSGYEKDISRLIRQIRGLKDNVRTKASELV--KILNNPLCPQSISLATFSKKVVSRCETPDDNVAMSCGYVIVLVA  442 (495)
Q Consensus       365 lnke~~d~rRqI~K~VgQIS~tkeqVk~Ks~ELv--qiLn~pq~P~~fALnifAKKIISQ~Es~a~s~AFalAeVIv~Va  442 (495)
                      ...++-.+++.|+..||.+..  .++...+.+|.  +++.        .-++|++.||..--+.- .+...||..+.+|-
T Consensus       157 QRmnWEalkksInglInkvn~--sNi~~ii~eLfqeNiir--------gRgl~crsv~~aq~asp-~ft~vyaALvAviN  225 (739)
T KOG2140|consen  157 QRMNWEALKKSINGLINKVNA--SNIQEIIRELFQENIIR--------GRGLLCRSVMQAQAASP-GFTPVYAALVAVIN  225 (739)
T ss_pred             HHHHHHHHHHHhHHHHhhhhH--HHHHHHHHHHHHHHHHh--------ccchhHHHHHHHHhcCC-CCcHHHHHHHHHHc
Confidence            445778899999999988743  34555555653  3333        24567777776443322 37788999999999


Q ss_pred             hhcccHHHHHHHHhh
Q 011038          443 SQVPQVMDILLGEFH  457 (495)
Q Consensus       443 aQ~Pe~~DILLAkFH  457 (495)
                      +.||+++.+||-++.
T Consensus       226 skfP~IgElLlkrLi  240 (739)
T KOG2140|consen  226 SKFPQIGELLLKRLI  240 (739)
T ss_pred             cCCchHHHHHHHHHH
Confidence            999999999998764

>KOG3054 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.95  E-value=10  Score=39.16  Aligned_cols=13  Identities=31%  Similarity=0.330  Sum_probs=8.8

Q ss_pred             HHHHHHHHHhhhc
Q 011038          412 LATFSKKVVSRCE  424 (495)
Q Consensus       412 LnifAKKIISQ~E  424 (495)
                      |+.+||=|=.+.-
T Consensus       262 l~AVAkfIkqrGR  274 (299)
T KOG3054|consen  262 LAAVAKFIKQRGR  274 (299)
T ss_pred             HHHHHHHHHHcCc
Confidence            7777777766553

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=81.12  E-value=53  Score=39.34  Aligned_cols=15  Identities=27%  Similarity=0.341  Sum_probs=7.1

Q ss_pred             chhHHHHHHHHHHHH
Q 011038          148 GVKEEIRNLISTLET  162 (495)
Q Consensus       148 ~v~eeir~~~s~le~  162 (495)
                      +.-|+|+..+-.||.
T Consensus       773 ~t~eev~~a~~~le~  787 (1018)
T KOG2002|consen  773 RTLEEVLEAVKELEE  787 (1018)
T ss_pred             ccHHHHHHHHHHHHH
Confidence            444455544444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	495
3pev_B	297	Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he	2e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-06
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	3e-05
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-04
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	9e-05

>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B* Length = 297

 Score = 81.7 bits (201), Expect = 2e-17
 Identities = 25/164 (15%), Positives = 57/164 (34%), Gaps = 13/164 (7%)

Query: 345 QKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIR----QIRGLKDNVRTKASELVKI 400
                K+ ++ ++       ++ +         R I     Q+      +    +EL ++
Sbjct: 13  WHYKDKIAQIKQDIVLPIKKADVNVRNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQL 72

Query: 401 LNNPLCPQSIS---LATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLG 454
           +N+           L   +K VV + ET        A+  G + + +  Q P++ ++ + 
Sbjct: 73  INDTKGDSLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMA 132

Query: 455 EFHRACIYTVPKHIVFS--EFRLHLNQKRL-TTKLLDTVRKMER 495
              + C + +         + R ++  KR    K  D     ER
Sbjct: 133 RLVKKCPFVIGFTCEIDTEKGRQNMGWKRNNENKWEDNTSYDER 176

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 63.3 bits (153), Expect = 1e-10
 Identities = 71/551 (12%), Positives = 155/551 (28%), Gaps = 168/551 (30%)

Query: 12  QKVDGIAIDPEPDWS----FDALLSELNS-----LETRLNASSKPVPFTKTKSREISTGK 62
           +++D I +  +        F  LLS+        +E  L        F  +  +      
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR---INYKFLMSPIKTEQRQP 105

Query: 63  SVESNARAFVIRVSDDELENDNE--RKGEEVHNGSLVAVKRFTC-----DALYLSESDDS 115
           S+    R ++ +   D L NDN+   K    +N     V R         AL        
Sbjct: 106 SM--MTRMYIEQR--DRLYNDNQVFAK----YN-----VSRLQPYLKLRQALL---ELRP 149

Query: 116 DDDVAL----G-GESYLMDEVGLADGAL----------VELTHQHQLG-VKEEIRNLIST 159
             +V +    G G++++  +V      +          + L + +    V E ++ L+  
Sbjct: 150 AKNVLIDGVLGSGKTWVALDV-CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 160 LETQLISENEQSNSALAQVE--KDRDMR--REMDRKN-----DTVYQRKIAEALDNH--- 207
           ++    S ++ S++   ++   +    R  +    +N       V   K   A +     
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKI 268

Query: 208 -LTAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEE 266
            LT   R  ++   +             A     +L    +     + +  +  K     
Sbjct: 269 LLTT--RFKQVTDFL-----------SAATTTHISLDHHSMTLTPDEVK-SLLLKY---- 310

Query: 267 AKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRG-SRSD 325
                   + R      E                       P   S+IA +   G +  D
Sbjct: 311 -------LDCRPQDLPRE------------------VLTTNPRRLSIIAESIRDGLATWD 345

Query: 326 -----GTKKLQSAVRATESAL-------------------NIEQKRLQKL-KELDEENQS 360
                   KL + + ++ + L                   +I    L  +  ++ + +  
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Query: 361 LKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELV----KILNNPLCPQSISLATFS 416
           + ++    +S  EK        I  +   ++ K          I+++   P++       
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 417 KKVVSRCETPDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHIVFSEFR-L 475
                      D       Y    +               H   +  +      + FR +
Sbjct: 466 PP-------YLDQ------YFYSHIG-------------HH---LKNIEHPERMTLFRMV 496

Query: 476 HLNQKRLTTKL 486
            L+ + L  K+
Sbjct: 497 FLDFRFLEQKI 507

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 5e-05
 Identities = 64/434 (14%), Positives = 134/434 (30%), Gaps = 98/434 (22%)

Query: 25  W-------SFDALLSELNSLETRL--NASSKPVPFTKTKSREISTGKSVESNARAFVIR- 74
           W       S + +L  L  L  ++  N +S+    +  K R      S+++  R  +   
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI----HSIQAELRRLLKSK 241

Query: 75  -------VSDDELENDNERKGEEVHNGSLVAVKRFTCDALYLSESDDSDDDVALGGESYL 127
                  V  +            V N         +C  L  +        V        
Sbjct: 242 PYENCLLVLLN------------VQNAKAWNAFNLSCKILLTT----RFKQVT------- 278

Query: 128 MDEVGLADGALVELTHQHQLGVKEEIRNL----ISTLETQLISENEQSNS-ALAQV-EKD 181
            D +  A    + L H       +E+++L    +      L  E   +N   L+ + E  
Sbjct: 279 -DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 182 RDMRREMDRKNDTVYQR----KIAEALDNHLTAVQRDHELKSQIEERKI-RSDAAYEEAK 236
           RD     D      ++     K+   +++ L  V    E +   +   +    A      
Sbjct: 338 RDGLATWDN-----WKHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSA-----H 386

Query: 237 RKERALQ---EEKIRQEKVKAEAEMQAK-LRAEEAKRAA-------LEAEKRAAKEAAER 285
                L     + I+ + +    ++    L  ++ K +        LE + +   E A  
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 286 EAAENSKRITAGVSQDGACGRQPDDS---SVIA---GAQSRGSRSDGTKK-------LQS 332
            +  +   I      D        D    S I           R    +        L+ 
Sbjct: 447 RSIVDHYNIPKTFDSDD-LIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505

Query: 333 AVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDN-VR 391
            +R   +A N     L  L++L      +  +  +    YE+ ++ ++  +  +++N + 
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK----YERLVNAILDFLPKIEENLIC 561

Query: 392 TKASELVKI-LNNP 404
           +K ++L++I L   
Sbjct: 562 SKYTDLLRIALMAE 575

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 37/218 (16%), Positives = 89/218 (40%), Gaps = 24/218 (11%)

Query: 151  EEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRK--IAEALDNHL 208
             ++   +   E        +  +A  +++K  D    M+ +N+ + + +  + E + +  
Sbjct: 958  LDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLT 1017

Query: 209  TAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAK 268
            T +  + E    + + K + ++   E + + +  +EEK RQE  K + +++ +      +
Sbjct: 1018 TNLAEEEEKAKNLTKLKNKHESMISELEVRLK--KEEKSRQELEKIKRKLEGESSDLHEQ 1075

Query: 269  RAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTK 328
             A L+A+    K    ++  E    +           R  D++S    A  +       +
Sbjct: 1076 IAELQAQIAELKAQLAKKEEELQAALA----------RLEDETSQKNNALKK------IR 1119

Query: 329  KLQSAVRATESALNIEQKRLQKLK----ELDEENQSLK 362
            +L+S +   +  L  E+    K +    +L EE ++LK
Sbjct: 1120 ELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALK 1157

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 40/259 (15%), Positives = 90/259 (34%), Gaps = 47/259 (18%)

Query: 151  EEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHLTA 210
            ++    +  LE +     E+ N    +++ + ++  E +     +  +K        L  
Sbjct: 874  QKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQ------ELEE 927

Query: 211  VQRDHELKSQIEERKIRSDAAYEEAKRK---------ERALQEEKIRQEKVKAEAEMQAK 261
            +  + E + + EE + +     +  K+K         E+  +EE  RQ+    +     K
Sbjct: 928  ILHEMEARIEEEEERSQ---QLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984

Query: 262  LRAEEAKRAALE---AEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQ 318
            ++  E     +E    +    ++  E   ++ +  +                        
Sbjct: 985  IKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAE---------------------- 1022

Query: 319  SRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISR 378
                  +  K L       ES ++  + RL+K ++  +E + +K     + S   + I+ 
Sbjct: 1023 ----EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAE 1078

Query: 379  LIRQIRGLKDNVRTKASEL 397
            L  QI  LK  +  K  EL
Sbjct: 1079 LQAQIAELKAQLAKKEEEL 1097

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 38/191 (19%), Positives = 75/191 (39%), Gaps = 21/191 (10%)

Query: 208  LTAVQRDHELKSQIEE-RKIRSDAAYEEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEE 266
            L   +++ E++++ EE ++ +      EA+ KE   +  ++ +EK      +Q KL+AE 
Sbjct: 850  LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNL----LQEKLQAET 905

Query: 267  AKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSVIAGAQSRGSRSDG 326
               A  E E R    A ++E  E    + A + ++                +        
Sbjct: 906  ELYAEAE-EMRVRLAAKKQELEEILHEMEARIEEE---------------EERSQQLQAE 949

Query: 327  TKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGL 386
             KK+Q  +   E  L  E+   QKL+              +D    E   ++L ++ + L
Sbjct: 950  KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLL 1009

Query: 387  KDNVRTKASEL 397
            ++ V    + L
Sbjct: 1010 EERVSDLTTNL 1020

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 129 DEVGLADGALVELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQ------VEKDR 182
           +           L       V  +   ++S+++ Q +   +Q      Q      +E   
Sbjct: 607 EMSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITT 666

Query: 183 DMRREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAKRKERAL 242
           + +    +      +++    L+      Q + E K++ E  ++ + +   E+    +A 
Sbjct: 667 NSQEAAAKHEAQRLEQEARGRLERQKILDQSEAE-KARKELLELEAMSMAVESTGNAKAE 725

Query: 243 QEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKR 293
            E +    +++ E  +       +A     EAE    K+  E E      +
Sbjct: 726 AESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQ 776

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 24/172 (13%), Positives = 61/172 (35%), Gaps = 7/172 (4%)

Query: 139 VELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQR 198
           + ++      V+   +     L+  +    E + ++     K    R E + +     Q+
Sbjct: 633 LVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTNSQEAAAKHEAQRLEQEARGRLERQK 692

Query: 199 KI----AEALDNHLTAVQRDHELKSQIEERKIRSDAAYEEAK-RKERALQEEKIRQEK-- 251
            +    AE     L  ++            K  +++  E A+   E ++ + K++ +   
Sbjct: 693 ILDQSEAEKARKELLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALA 752

Query: 252 VKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGA 303
           ++ EAE++   +  E +     A+       A++ A   +K+        G 
Sbjct: 753 IETEAELERVKKVREMELIYARAQLELEVSKAQQLANVEAKKFKEMTEALGP 804

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 32/234 (13%), Positives = 77/234 (32%), Gaps = 18/234 (7%)

Query: 185  RREMDRKNDTVYQRKIAEALDNHLTAVQRDHELKSQIEERKIRSDAA---YEEAKRKERA 241
            +R    ++ T+  + +               E KS I ++ +R   A   Y    +    
Sbjct: 833  KRYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVY 892

Query: 242  LQEEKIR------QEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSKRIT 295
            LQ    R       +K+K EA    + +        LE +    +   + +  E    + 
Sbjct: 893  LQCCYRRMMAKRELKKLKIEARSVERYKKLHIG---LENKIMQLQRKIDEQNKEYKSLLE 949

Query: 296  AGVSQDGACGRQPDDSSVIAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKL---- 351
               + +       +   + +  +      +  K   + V + +  +   +K L +     
Sbjct: 950  KMNNLEIT--YSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK 1007

Query: 352  KELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPL 405
            K ++E     K  + +  S  ++  + L  +   L   +  +A E+ + +   L
Sbjct: 1008 KTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKL 1061

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 19/146 (13%), Positives = 51/146 (34%), Gaps = 9/146 (6%)

Query: 149  VKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRKIAEALDNHL 208
            +   + N I  L+ ++  +N++  S L ++            K      R   E L    
Sbjct: 922  LHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEK-----LRSDVERLRMSE 976

Query: 209  TAVQRDHELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKAE-AEMQAKLRAEEA 267
               +        ++E   +      + + +++ ++E     +K K E  ++ ++L+ +  
Sbjct: 977  EEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWA---DKYKHETEQLVSELKEQNT 1033

Query: 268  KRAALEAEKRAAKEAAEREAAENSKR 293
                 + E         +E  E  ++
Sbjct: 1034 LLKTEKEELNRRIHDQAKEITETMEK 1059

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 25/230 (10%), Positives = 69/230 (30%), Gaps = 17/230 (7%)

Query: 140  ELTHQHQLGVKEEIRNLISTLETQLISENEQSNSALAQVEKDRDMRREMDRKNDTVYQRK 199
             L     + +++ +R  ++ +         ++   L    +    +RE+ +        K
Sbjct: 861  MLREHKSIIIQKHVRGWLARVHYH---RTLKAIVYLQCCYRRMMAKRELKKL-------K 910

Query: 200  IAEALDNHLTAVQRD-----HELKSQIEERKIRSDAAYEEAKRKERALQEEKIRQEKVKA 254
            I          +         +L+ +I+E+     +  E+    E     E  +      
Sbjct: 911  IEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVE 970

Query: 255  EAEMQAK-LRAEEAKRAALEAEKRAAKEAAEREAAENSKRITAGVSQDGACGRQPDDSSV 313
               M  +  +    +  +L+ E    ++   +   E  K I     +      Q      
Sbjct: 971  RLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEK-KTIEEWADKYKHETEQLVSELK 1029

Query: 314  IAGAQSRGSRSDGTKKLQSAVRATESALNIEQKRLQKLKELDEENQSLKL 363
                  +  + +  +++    +     +  +     K  ELD  ++ L+ 
Sbjct: 1030 EQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 42.5 bits (99), Expect = 9e-05
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 233 EEAKRKERALQEEKIRQEKVKAEAEMQAKLRAEEAKRAALEAEKRAAKEAAEREAAENSK 292
            E+ RK R  Q +++ QE   A   M+ + R E+AK+  LE   +   E  E+    N  
Sbjct: 84  PESIRKWREEQRKRL-QELDAASKVMEQEWR-EKAKKD-LEEWNQRQSEQVEKNKINNRI 140

Query: 293 RITAGVSQDGACGRQPDDSSV 313
                   D A  +QPD   +
Sbjct: 141 A-------DKAFYQQPDADII 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	495
3pev_B	297	Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he	99.97

>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*

Probab=99.97  E-value=8.2e-31  Score=258.89  Aligned_cols=163  Identities=15%  Similarity=0.171  Sum_probs=135.2

Q ss_pred             ccchhhhhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhhhhhhhhhhccchhHHHhHHHHHHHHhcCCCC-
Q 011038          328 KKLQSAVRATESALNIEQKRLQKLKELDEENQSLKLSSNEDFSGYEKDISRLIRQIRGLKDNVRTKASELVKILNNPLC-  406 (495)
Q Consensus       328 ~~s~~~~raa~sAl~~E~~Rlk~LkEL~e~n~~LK~~lnke~~d~rRqI~K~VgQIS~tkeqVk~Ks~ELvqiLn~pq~-  406 (495)
                      +-+.++..+.......++-+......++..|+.+    ++.+++++|+|+++||||++|.+|++.++++|.++|+++.. 
T Consensus         4 ~~~~~~~~~~~y~~~i~~ik~~v~~~~~~~n~~l----K~~~~~~kR~I~~~igQLt~s~~qi~~i~~~L~~ll~~~~~~   79 (297)
T 3pev_B            4 NFDKISKMFWHYKDKIAQIKQDIVLPIKKADVNV----RNLLSRHKRKINPKFGQLTNSNQQLFKIQNELTQLINDTKGD   79 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTHHHHHHSCHHH----HHHHHHHHHHHTTHHHHCCSBHHHHHHHHHHHHHHHHTTTTS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHH----HHHHHHHhhhccchhccccCCHHHHHHHHHHHHHHHhCccCC
Confidence            3444555556666666666655555555555554    45569999999999999999999999999999999987643 


Q ss_pred             --chHHHHHHHHHHHHhhhcC---CCCCCchhhHHHHHHHHhhcccHHHHHHHHhhhhccccccccc--chhhhHhhhcc
Q 011038          407 --PQSISLATFSKKVVSRCET---PDDNVAMSCGYVIVLVASQVPQVMDILLGEFHRACIYTVPKHI--VFSEFRLHLNQ  479 (495)
Q Consensus       407 --P~~fALnifAKKIISQ~Es---~a~s~AFalAeVIv~VaaQ~Pe~~DILLAkFHkvCpYTVPkyi--~~~~~r~~~~~  479 (495)
                        |+.|+||+|||+||+|+|+   .++..|||||.|++.|++++|+|+|||||+||++|||+||+|.  .+++||.+|||
T Consensus        80 ~~~~~~~ln~lAK~iV~Q~e~ev~~~p~sA~PlA~v~~~l~~~~p~~~dillA~l~k~CP~~vp~~~~~~teegr~~mG~  159 (297)
T 3pev_B           80 SLAYHWILNFIAKAVVHQAETEVRVKPESALPLGKLTLYLLVQFPELQELFMARLVKKCPFVIGFTCEIDTEKGRQNMGW  159 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHSTTHHHHHHHHHHHHCGGGGTCCCCCSSHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhccCCcccchHHHHHHHHHHhCccHHHHHHHHHhhcCCcccccCCCcccHHHHHHcCC
Confidence              5567999999999999999   3467899999999999999999999999999999999999985  47899999999


Q ss_pred             ccc-chhHHHHHHhhh
Q 011038          480 KRL-TTKLLDTVRKME  494 (495)
Q Consensus       480 kr~-~~k~~~~~~~~~  494 (495)
                      ||. |++||++..-++
T Consensus       160 ~~~~dg~~E~~~~y~~  175 (297)
T 3pev_B          160 KRNNENKWEDNTSYDE  175 (297)
T ss_dssp             CBCTTSCBCCHHHHHH
T ss_pred             eeCCCCCcccHHHHHH
Confidence            996 689988765544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	495
d2es4d1	280	a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)	0.003

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00