Citrus Sinensis ID: 011137
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 493 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S7R4 | 482 | Pentatricopeptide repeat- | yes | no | 0.945 | 0.966 | 0.681 | 0.0 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.912 | 0.870 | 0.291 | 4e-58 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.939 | 0.907 | 0.273 | 2e-56 | |
| Q0WP85 | 509 | Pentatricopeptide repeat- | no | no | 0.920 | 0.891 | 0.282 | 1e-53 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.774 | 0.506 | 0.312 | 2e-52 | |
| Q9LN22 | 537 | Pentatricopeptide repeat- | no | no | 0.744 | 0.683 | 0.299 | 1e-51 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.738 | 0.588 | 0.301 | 1e-50 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.734 | 0.574 | 0.292 | 2e-48 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.718 | 0.645 | 0.299 | 4e-48 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.687 | 0.534 | 0.300 | 8e-48 |
| >sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900, mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/474 (68%), Positives = 384/474 (81%), Gaps = 8/474 (1%)
Query: 26 TTTSPAPLPPAAADPAALASLILTSTDPRTLTQT----LHCPSLHWTPQLVDQIIKRLWN 81
T+ + A L P AD AA+A LIL+S P T Q L + WTP LV+ ++KRLWN
Sbjct: 11 TSAAGANLKPPPADSAAIAKLILSS--PNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWN 68
Query: 82 HALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
H KAL FF+ L ++H Y H SSFD AID+AARL + TVW+L+HRM+SL +GP+ KT
Sbjct: 69 HGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKT 128
Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
FAI+AERY SAGK D+AVK+FL+MHEHGC Q L SFNTILD+LCK K+VEKAY LF+ R
Sbjct: 129 FAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 188
Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
G+F D ++YNVI NGWCL+KRT KALEVLKEMV+RG+NPNLTTYN +LKG+FRAGQI
Sbjct: 189 GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH 248
Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
AW FFLEMKKR CEIDVVTYTT+VHGFGV GEIKRARNVFD M+ GVLPSVATYNAMIQ
Sbjct: 249 AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQ 308
Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
VLCKKD+VENA+++FEEMV +GY PN TTYNV+IRGL H GE R E + RM+++ CEP
Sbjct: 309 VLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEP 368
Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
N QTYN++IRY+ + E+E+ L LFEKMGSG CLPNLDTYNILIS MFVRK+S+D++VAG
Sbjct: 369 NFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAG 428
Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG-RLPRQFKL 493
KLL+EMV+RGF+PRKFTFNRVLNGLLL GNQ AKEILRLQS+ G RL R+F+L
Sbjct: 429 KLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSGSRLLRKFRL 482
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Required for the trans-splicing of intron 1 of the mitochondrial nad1 transcript encoding the ND1 subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/456 (29%), Positives = 227/456 (49%), Gaps = 6/456 (1%)
Query: 11 NHLHFFCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQ 70
N FC LS +S + A D A S +L S+ L L L + +
Sbjct: 43 NRQSRFCCKSFLSARLYSSSEQVRDVA-DVAKNISKVLMSSPQLVLDSALDQSGLRVSQE 101
Query: 71 LVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMK 130
+V+ ++ R N L FF Y HS ++ I+ A++R Y+ +W L++ M+
Sbjct: 102 VVEDVLNRFRNAGLLTYRFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMR 161
Query: 131 SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190
+ + TF I+ +Y A K D A+ F M ++ +L +FN +L LCK K V
Sbjct: 162 KKKMLNVE-TFCIVMRKYARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVR 220
Query: 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250
KA +F+ R +F D +Y+++ GW KA EV +EM+D G +P++ TY+I++
Sbjct: 221 KAQEVFENMRDRFTPDSKTYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVD 280
Query: 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310
+AG+++EA M C+ Y+ +VH +G ++ A + F M G+
Sbjct: 281 ILCKAGRVDEALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKA 340
Query: 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370
VA +N++I CK + ++N V +EM KG PNS + N+++R L GE + A +
Sbjct: 341 DVAVFNSLIGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVF 400
Query: 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430
+M CEP+ TY ++I+ FC+ E+E ++++ M P++ T+++LI+ +
Sbjct: 401 RKMI-KVCEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEE 459
Query: 431 KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466
+ + V LL EM++ G P TF R+ L+
Sbjct: 460 RTTQKACV---LLEEMIEMGIRPSGVTFGRLRQLLI 492
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 130/475 (27%), Positives = 240/475 (50%), Gaps = 12/475 (2%)
Query: 16 FCIYRGLSPLTTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQI 75
F +Y + + A+ D + ++ TD + T L+ S+ +P L++++
Sbjct: 42 FTLYGSFHASSVETQVSANDASQDAERICKILTKFTDSKVET-LLNEASVKLSPALIEEV 100
Query: 76 IKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG 135
+K+L N + AL F + H+ S+++ I+ +++ ++ +W+LV MK+ L
Sbjct: 101 LKKLSNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKL- 159
Query: 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195
+++TFA+I+ RY A K A+ F M E G + + FN +LD L K + V A +
Sbjct: 160 LSKETFALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKV 219
Query: 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254
F K+ + +F+ D+ SY ++ GW + EV +EM D G P++ Y I++ + +
Sbjct: 220 FDKMKKKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCK 279
Query: 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314
A + EEA RFF EM++R C+ + ++++G G ++ A F+ + G T
Sbjct: 280 AKKYEEAIRFFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPT 339
Query: 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
YNA++ C +E+A +EM KG PN+ TY++++ L + A E M
Sbjct: 340 YNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSKEAYEVYQTM- 398
Query: 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434
CEP V TY I++R FC+ ++ ++++++M LP + ++ LI+++ K D
Sbjct: 399 --SCEPTVSTYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLD 456
Query: 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPR 489
+ A + EM+D G P F+R+ LL ++G ++ L + RL +
Sbjct: 457 E---ACEYFNEMLDVGIRPPGHMFSRLKQTLL---DEGRKDKVTDLVVKMDRLRK 505
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WP85|PP150_ARATH Pentatricopeptide repeat-containing protein At2g13420, mitochondrial OS=Arabidopsis thaliana GN=At2g13420 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (537), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/485 (28%), Positives = 247/485 (50%), Gaps = 31/485 (6%)
Query: 1 MFALLRKPPKNHLHFFCIYRGLSPLTT---TSPAPLPPAAADPAALASLILTSTDP-RTL 56
M L + P HLH + R +S + + T P ++D ++ +++T+ +P +
Sbjct: 1 MLLLKQISPPFHLH--QLRRRISTIISAGFTLNLPKLEPSSDAELISQMLITNHNPFHFM 58
Query: 57 TQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARL 116
+L + TP L+ Q + RL +++ AL FF L P+ + +P+SF+ ID+ R+
Sbjct: 59 ESSLQLNGISLTPNLIHQTLLRLRHNSKIALSFFQYLRSLPSPSTTPTSFNLIIDILGRV 118
Query: 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-----RQ 171
R + V L+ M S +TF I+ +R ++AG +AV+ F + C R
Sbjct: 119 RQFDVVRQLIVEMDQTS----PETFLILVKRLIAAGLTRQAVRAF---DDAPCFLENRRF 171
Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
L F +LD LCK + A +F + +F +D Y ++ GWC ++R + A + L
Sbjct: 172 RLVEFGFLLDTLCKYGYTKMAVGVFNERKEEFGSDEKVYTILIAGWCKLRRIDMAEKFLV 231
Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF----------FLEMKKRKCEIDVVTYT 281
EM++ G+ PN+ TYN++L G R + RF F EM++R E DV +++
Sbjct: 232 EMIESGIEPNVVTYNVLLNGICRTASLHPEERFERNVRNAEKVFDEMRQRGIEPDVTSFS 291
Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
++H + + + + M G+ P++ TY ++++ LC +E A + E MV
Sbjct: 292 IVLHMYSRAHKAELTLDKMKLMKAKGISPTIETYTSVVKCLCSCGRLEEAEELLETMVES 351
Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
G P+S TYN + + A+ +MK+ C+P+ QTYN+L+ F + G++E
Sbjct: 352 GISPSSATYNCFFKEYKGRKDANGAMNLYRKMKNGLCKPSTQTYNVLLGTFINLGKMETV 411
Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
E+++ + + P+LD+Y L+ + ++K + A +EM++RGF+P+K TF +
Sbjct: 412 KEIWDDLKASETGPDLDSYTSLVHGLCSKEKWKE---ACGYFVEMIERGFLPQKLTFETL 468
Query: 462 LNGLL 466
GL+
Sbjct: 469 YKGLI 473
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/387 (31%), Positives = 197/387 (50%), Gaps = 5/387 (1%)
Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
S+F+ I R R ++ M S L P +KTF + + Y+ G D A++I
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249
Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVK 221
M E GC S S N I+ CKE +VE A N + + F D ++N + NG C
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309
Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
A+E++ M+ G +P++ TYN V+ G + G+++EA +M R C + VTY
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYN 369
Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
T++ +++ A + + + G+LP V T+N++IQ LC + A+ +FEEM K
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429
Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
G P+ TYN++I LC G+++ AL + +M+ C +V TYN LI FC A +
Sbjct: 430 GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREA 489
Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
E+F++M N TYN LI + ++ +D A +L+ +M+ G P K+T+N +
Sbjct: 490 EEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED---AAQLMDQMIMEGQKPDKYTYNSL 546
Query: 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488
L G+ A +I++ + G P
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEP 573
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May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN22|PPR54_ARATH Pentatricopeptide repeat-containing protein At1g20300, mitochondrial OS=Arabidopsis thaliana GN=At1g20300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (519), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 114/381 (29%), Positives = 200/381 (52%), Gaps = 14/381 (3%)
Query: 59 TLHCPSLHWT--------PQLVDQIIKRLWN--HAL---KALHFFNILSYHPTYAH-SPS 104
TLH SL ++ P +V +I++ + H + ++L FFN + Y H SP
Sbjct: 93 TLHALSLDFSQIETSQVSPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPH 152
Query: 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164
++ IDL+ ++R + W L+ MKS ++ + +TF I+ RYV AG A AV F M
Sbjct: 153 PYNEMIDLSGKVRQFDLAWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRM 212
Query: 165 HEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224
++GC +F+ ++ L ++++ +A + F + +F+ DVI Y + GWC +
Sbjct: 213 EDYGCVPDKIAFSIVISNLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEIS 272
Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
+A +V KEM G+ PN+ TY+IV+ R GQI A F +M C + +T+ ++
Sbjct: 273 EAEKVFKEMKLAGIEPNVYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLM 332
Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
G ++ V++ M G P TYN +I+ C+ +++ENA+ V M+ K
Sbjct: 333 RVHVKAGRTEKVLQVYNQMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCE 392
Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
N++T+N + R + ++ A +M + +CEPN TYNIL+R F + + L++
Sbjct: 393 VNASTFNTIFRYIEKKRDVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKM 452
Query: 405 FEKMGSGVCLPNLDTYNILIS 425
++M PN++TY +L++
Sbjct: 453 KKEMDDKEVEPNVNTYRLLVT 473
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 201 bits (510), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 111/368 (30%), Positives = 186/368 (50%), Gaps = 4/368 (1%)
Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
L+ RM P + T+ + R +G + A+ +F M E + S+ ++ ++D LC
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256
Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
K+ + A +LF K KADV++Y+ + G C + + ++L+EM+ R + P++
Sbjct: 257 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 316
Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
T++ ++ + + G++ EA + EM R D +TY +++ GF + A +FD M
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376
Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
V+ G P + TY+ +I CK V++ + +F E+ KG +PN+ TYN ++ G C +G++
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436
Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
A E M P+V TY IL+ CD GE+ + LE+FEKM + YNI+
Sbjct: 437 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 496
Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483
I M K DD A L + D+G P T+N ++ GL G+ A + R
Sbjct: 497 IHGMCNASKVDD---AWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553
Query: 484 CGRLPRQF 491
G P F
Sbjct: 554 DGCTPDDF 561
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 193 bits (491), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/366 (29%), Positives = 189/366 (51%), Gaps = 4/366 (1%)
Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
L+ RM + P T+ ++ G D A + M + + +NTI+D L
Sbjct: 207 ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGL 266
Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
CK K ++ A NLFK K + +V++Y+ + + C R + A +L +M++R +NP++
Sbjct: 267 CKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDV 326
Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
T++ ++ + + G++ EA + + EM KR + +VTY+++++GF + + A+ +F+
Sbjct: 327 FTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEF 386
Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
MV+ P V TYN +I+ CK VE + VF EM +G + N+ TYN++I+GL G+
Sbjct: 387 MVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGD 446
Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
+ A E M D PN+ TYN L+ C G++E+ + +FE + P + TYNI
Sbjct: 447 CDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNI 506
Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
+I M K +D L + +G P +N +++G G++ A + +
Sbjct: 507 MIEGMCKAGKVED---GWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMK 563
Query: 483 RCGRLP 488
G LP
Sbjct: 564 EDGTLP 569
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 108/361 (29%), Positives = 191/361 (52%), Gaps = 7/361 (1%)
Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
+++ +M L P + T + + + AV + M E G + + ++N I+D L
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200
Query: 184 CKEKKVEKAYNLFK-VFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
CK K+V A++ FK + R + +V++Y + NG C R + A +L +M+ + + PN+
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 260
Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
TY+ +L + + G++ EA F EM + + D+VTY+++++G + I A +FD
Sbjct: 261 ITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDL 320
Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
MV+ G L V +YN +I CK VE+ + +F EM +G + N+ TYN +I+G G+
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380
Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
+++A EF +M P++ TYNIL+ CD GE+E+ L +FE M ++ TY
Sbjct: 381 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 440
Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482
+I M K ++ A L + +G P T+ +++GL +GL E+ L +
Sbjct: 441 VIRGMCKTGKVEE---AWSLFCSLSLKGLKPDIVTYTTMMSGLC---TKGLLHEVEALYT 494
Query: 483 R 483
+
Sbjct: 495 K 495
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 191 bits (486), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 103/343 (30%), Positives = 181/343 (52%), Gaps = 4/343 (1%)
Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
LV RM P T+ ++ G D A+ + M + FNTI+D L
Sbjct: 211 ALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSL 270
Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
CK + V+ A NLFK K + +V++Y+ + + C R + A ++L +M+++ +NPNL
Sbjct: 271 CKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNL 330
Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
T+N ++ + + G+ EA + + +M KR + D+ TY ++V+GF + + +A+ +F+
Sbjct: 331 VTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEF 390
Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
MV+ P V TYN +I+ CK VE+ +F EM +G + ++ TY +I+GL H G+
Sbjct: 391 MVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGD 450
Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
+ A + +M D P++ TY+IL+ C+ G++E+ LE+F+ M ++ Y
Sbjct: 451 CDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTT 510
Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
+I M K DD L + +G P T+N +++GL
Sbjct: 511 MIEGMCKAGKVDD---GWDLFCSLSLKGVKPNVVTYNTMISGL 550
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 493 | ||||||
| 224133408 | 491 | predicted protein [Populus trichocarpa] | 0.922 | 0.926 | 0.767 | 0.0 | |
| 255540805 | 482 | pentatricopeptide repeat-containing prot | 0.935 | 0.956 | 0.739 | 0.0 | |
| 449469499 | 502 | PREDICTED: pentatricopeptide repeat-cont | 0.904 | 0.888 | 0.743 | 0.0 | |
| 75194072 | 482 | RecName: Full=Pentatricopeptide repeat-c | 0.945 | 0.966 | 0.681 | 0.0 | |
| 356541430 | 492 | PREDICTED: pentatricopeptide repeat-cont | 0.926 | 0.928 | 0.652 | 0.0 | |
| 356544698 | 495 | PREDICTED: pentatricopeptide repeat-cont | 0.916 | 0.913 | 0.654 | 0.0 | |
| 359491272 | 450 | PREDICTED: pentatricopeptide repeat-cont | 0.831 | 0.911 | 0.676 | 1e-178 | |
| 186495472 | 453 | pentatricopeptide repeat-containing prot | 0.886 | 0.964 | 0.628 | 1e-170 | |
| 51971677 | 447 | hypothetical protein [Arabidopsis thalia | 0.886 | 0.977 | 0.626 | 1e-170 | |
| 297839365 | 451 | predicted protein [Arabidopsis lyrata su | 0.890 | 0.973 | 0.621 | 1e-165 |
| >gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa] gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/455 (76%), Positives = 402/455 (88%)
Query: 39 DPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPT 98
+ AALA+LILTS++P+ L QTLH P++ WTPQLV+ I+KRLWN KAL FFN+LS+HP+
Sbjct: 37 EAAALATLILTSSNPQALAQTLHSPTIQWTPQLVNTILKRLWNDGPKALQFFNLLSHHPS 96
Query: 99 YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158
Y+H PSS+DHAID++ARLRD ++ +LV+RM+S LGPT KTFAIIAERY SAGK RAV
Sbjct: 97 YSHHPSSYDHAIDISARLRDSPSLRSLVYRMRSARLGPTPKTFAIIAERYASAGKPHRAV 156
Query: 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218
K+FLSMH+ GC Q L SFNTILD+LCK K+VE AYNLFKVF+GKF+AD +SYNV+ NGWC
Sbjct: 157 KVFLSMHQFGCFQDLQSFNTILDVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWC 216
Query: 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278
L+KRTNKALE+LKEMV RGL PNLT+YN +LKGYFRAGQI EAW FFLEMKKR CEIDV+
Sbjct: 217 LIKRTNKALEMLKEMVKRGLTPNLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVI 276
Query: 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338
TYTT++HGFGV GEIKRAR VFD MV GVLPSVATYNA IQVLCKKD+V+NAI++FEEM
Sbjct: 277 TYTTVIHGFGVAGEIKRARKVFDTMVKKGVLPSVATYNAFIQVLCKKDNVDNAIVIFEEM 336
Query: 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
V KGY+PNS TYN+VIRGLCH GEMERA+EF+GRMKDD CEPNVQTYN++IRYFCD GEI
Sbjct: 337 VVKGYVPNSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVIRYFCDEGEI 396
Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
++ L+LF+KM SG CLPNLDTYNILIS+MFVRKKSDDLLVAG LLIEMVDRGF+PRKFTF
Sbjct: 397 DKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTF 456
Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
NRVLNGLLL GNQG AKEILRLQSRCGRL R+ KL
Sbjct: 457 NRVLNGLLLTGNQGFAKEILRLQSRCGRLTRKIKL 491
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 346/468 (73%), Positives = 403/468 (86%), Gaps = 7/468 (1%)
Query: 26 TTTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALK 85
TTTSP P A LA+LIL ST+ +TL ++LH PS+ WTPQLV+ I+KRLWNH K
Sbjct: 22 TTTSP----PEAT---TLAALILNSTNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPK 74
Query: 86 ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145
ALHFF ILS+HP+Y H SSFDHAID+ ARLRD+RT+W LV RM+S LGP+ +TFAIIA
Sbjct: 75 ALHFFKILSHHPSYCHQASSFDHAIDICARLRDFRTLWFLVSRMRSCRLGPSPRTFAIIA 134
Query: 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205
ERY + GK RAV +F+SMHE+GC Q L+SFNTILD+LCK K+VE AYNLFK +GKFKA
Sbjct: 135 ERYAAMGKPHRAVTVFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKA 194
Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265
D +SYN+I NGWCL+KRT KALE+LKEMV+RGL PNLTTYNI+L GYFRAGQ EAW FF
Sbjct: 195 DCVSYNIIVNGWCLIKRTPKALEMLKEMVERGLTPNLTTYNIMLNGYFRAGQTNEAWGFF 254
Query: 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325
LEMKKRKC+IDVVTYT+++HG GVVGEIKRARNVF+ MV GVLPSVAT+NA+IQ+LCKK
Sbjct: 255 LEMKKRKCDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQILCKK 314
Query: 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTY 385
DSVENAIL+FEEMV +GY+PNS TYN+VIRGLCH GEM+RA+E + RM+DD+CEPNVQTY
Sbjct: 315 DSVENAILIFEEMVKRGYVPNSITYNLVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTY 374
Query: 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIE 445
NILIRYFCDAGEIE+GL+LF+KMG+G CLPNLDTYNILI+SMFVRK SD+LLVAGKLL+E
Sbjct: 375 NILIRYFCDAGEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDNLLVAGKLLVE 434
Query: 446 MVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
MVDRGF+PRK TFNRVL+GLLL GNQ AKEIL LQ CGRLPR+FKL
Sbjct: 435 MVDRGFLPRKLTFNRVLDGLLLTGNQDFAKEILSLQGGCGRLPRKFKL 482
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Cucumis sativus] gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 718 bits (1853), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/448 (74%), Positives = 392/448 (87%), Gaps = 2/448 (0%)
Query: 47 ILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSF 106
++ +DP++L +LH L +TP+LVD+++KRLW H KAL FF L YHP+YAHS SSF
Sbjct: 56 LVLESDPKSLRGSLHGLQLQFTPELVDKVLKRLWFHGPKALQFFKHLEYHPSYAHSASSF 115
Query: 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166
DHAID+A R+RDY+TVW LV RM++ +GP+ KTFAIIAER+V+AGK DRA+K+FLSM E
Sbjct: 116 DHAIDIAGRMRDYKTVWALVARMRARRIGPSSKTFAIIAERFVAAGKPDRAIKVFLSMRE 175
Query: 167 HGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCLVKRTNK 225
HGC Q L+SFNTILD+LCK K+VE AYN LFKV RGKFKADV+SYN+IANGWCL+KRT K
Sbjct: 176 HGCPQDLHSFNTILDILCKSKRVEMAYNNLFKVLRGKFKADVVSYNIIANGWCLIKRTPK 235
Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
ALEVLKEMV+RGL P +TTYNI+LKGYFRAGQ++EAW FFL+MK+R+ EIDVVTYTT+VH
Sbjct: 236 ALEVLKEMVERGLTPTITTYNILLKGYFRAGQLKEAWEFFLQMKEREVEIDVVTYTTMVH 295
Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
GFGVVGEIKRAR VF+ MV G+LPS ATYNAMIQVLCKKDSVENA+L+FEEMV KGY+P
Sbjct: 296 GFGVVGEIKRARKVFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVP 355
Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELF 405
N TTYNVVIRGL H G M++A+EF+ RMK D CEPNVQTYN+ IRYFCDAG++E+GL +F
Sbjct: 356 NLTTYNVVIRGLFHAGNMDKAMEFIERMKTDGCEPNVQTYNVAIRYFCDAGDVEKGLSMF 415
Query: 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465
EKMG G LPNLDTYN+LIS+MFVRKKS+DL+VAGKLL+EMVDRGF+PRKFTFNRVLNGL
Sbjct: 416 EKMGQG-SLPNLDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGL 474
Query: 466 LLIGNQGLAKEILRLQSRCGRLPRQFKL 493
LL GNQ AKEILRLQS+CGRLPRQFKL
Sbjct: 475 LLTGNQAFAKEILRLQSKCGRLPRQFKL 502
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g74900, mitochondrial; AltName: Full=Protein ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags: Precursor gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana] gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/474 (68%), Positives = 384/474 (81%), Gaps = 8/474 (1%)
Query: 26 TTTSPAPLPPAAADPAALASLILTSTDPRTLTQT----LHCPSLHWTPQLVDQIIKRLWN 81
T+ + A L P AD AA+A LIL+S P T Q L + WTP LV+ ++KRLWN
Sbjct: 11 TSAAGANLKPPPADSAAIAKLILSS--PNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWN 68
Query: 82 HALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
H KAL FF+ L ++H Y H SSFD AID+AARL + TVW+L+HRM+SL +GP+ KT
Sbjct: 69 HGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKT 128
Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
FAI+AERY SAGK D+AVK+FL+MHEHGC Q L SFNTILD+LCK K+VEKAY LF+ R
Sbjct: 129 FAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 188
Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
G+F D ++YNVI NGWCL+KRT KALEVLKEMV+RG+NPNLTTYN +LKG+FRAGQI
Sbjct: 189 GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH 248
Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
AW FFLEMKKR CEIDVVTYTT+VHGFGV GEIKRARNVFD M+ GVLPSVATYNAMIQ
Sbjct: 249 AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQ 308
Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
VLCKKD+VENA+++FEEMV +GY PN TTYNV+IRGL H GE R E + RM+++ CEP
Sbjct: 309 VLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEP 368
Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
N QTYN++IRY+ + E+E+ L LFEKMGSG CLPNLDTYNILIS MFVRK+S+D++VAG
Sbjct: 369 NFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVAG 428
Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG-RLPRQFKL 493
KLL+EMV+RGF+PRKFTFNRVLNGLLL GNQ AKEILRLQS+ G RL R+F+L
Sbjct: 429 KLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFAKEILRLQSKSGSRLLRKFRL 482
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1669), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 300/460 (65%), Positives = 373/460 (81%), Gaps = 3/460 (0%)
Query: 36 AAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSY 95
A A A +A L+L S DPRTL++ L P +HWTP+LV++ +KRLWNH KAL FF L
Sbjct: 34 AEASDATIAKLVLES-DPRTLSEALTKPRIHWTPELVNKTLKRLWNHGPKALLFFKHLDR 92
Query: 96 H-PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA 154
H P+Y HSPSSFDHA+D+AAR+RD+ + W LV RM+SL LGP+ KT AI+AERY S GK
Sbjct: 93 HLPSYTHSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASIGKP 152
Query: 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214
RAV+ FLSMHEHG Q L+SFNT+LD+LCK +VE A++L + + +F+ D +SYN++A
Sbjct: 153 HRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRTLKSRFRPDTVSYNILA 212
Query: 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
NG+CL KRT AL VLKEMV RG+ P + TYN +LKGYFR+ QI+EAW F+LEMKKRKCE
Sbjct: 213 NGYCLKKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCE 272
Query: 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334
IDVV+YTT++HGFG GE+K+A+ VFD MV GV P+VATYNA+IQV CKKDSV+NA+ V
Sbjct: 273 IDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQVFCKKDSVQNAVAV 332
Query: 335 FEEMVGKGY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393
FEEMV +G PN T+NVVIRGLCH G+MERAL F+ RM + +VQTYN++IRYFC
Sbjct: 333 FEEMVREGVCSPNVVTFNVVIRGLCHVGDMERALGFMERMGEHGLRASVQTYNVVIRYFC 392
Query: 394 DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453
DAGEIE+GLE+F KMG G+CLPNLDTYN+LIS+MFVRKKS+DL+VAGKLL+EMV+RGF+P
Sbjct: 393 DAGEIEKGLEVFGKMGDGLCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMEMVERGFLP 452
Query: 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
RKFTFNRVLNGL++ GNQ AK+ILR+QSRCGR+ R+ KL
Sbjct: 453 RKFTFNRVLNGLVITGNQDFAKDILRMQSRCGRVVRRLKL 492
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 298/455 (65%), Positives = 373/455 (81%), Gaps = 3/455 (0%)
Query: 41 AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILS-YHPTY 99
A +A L+L S DPRT+++ L P++ WTP LV++++KRLWNH KAL FF L +HP+Y
Sbjct: 42 ATIAKLVLES-DPRTVSEALTKPTIQWTPDLVNKVMKRLWNHGPKALQFFKHLDRHHPSY 100
Query: 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159
HSPSSFDHA+D+AAR+RD+ + W LV RM+SL LGP+ KT AI+AERY S GK RAV+
Sbjct: 101 THSPSSFDHAVDIAARMRDFNSAWALVGRMRSLRLGPSPKTLAILAERYASNGKPHRAVR 160
Query: 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219
FLSM EHG RQ L+SFNT+LD+LCK K+VE A++L K +F+ D ++YN++ANG+CL
Sbjct: 161 TFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKTLTSRFRPDTVTYNILANGYCL 220
Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
+KRT AL VLKEMV RG+ P + TYN +LKGYFR+ QI+EAW F+LEMKKRKCEIDVVT
Sbjct: 221 IKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVT 280
Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
YTT++HGFGV G++K+A+ VF MV GV+P+VATYNA+IQVLCKKDSVENA++VFEEM
Sbjct: 281 YTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLCKKDSVENAVVVFEEMA 340
Query: 340 GKGY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
+G +PN TYNVVIRGLCH G+MERAL F+ RM + VQTYN++IRYFCDAGE+
Sbjct: 341 REGVCVPNVVTYNVVIRGLCHVGDMERALGFMERMGEHGLRACVQTYNVVIRYFCDAGEV 400
Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
E+ LE+F KMG G CLPNLDTYN+LIS+MFVRKKS+DL+VAGKLL++MVDRGF+PRKFTF
Sbjct: 401 EKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVVAGKLLMDMVDRGFLPRKFTF 460
Query: 459 NRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
NRVLNGL++ GNQ AKEILR+QSRCGR+ R+ KL
Sbjct: 461 NRVLNGLVITGNQDFAKEILRMQSRCGRIVRRLKL 495
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 630 bits (1625), Expect = e-178, Method: Compositional matrix adjust.
Identities = 307/454 (67%), Positives = 352/454 (77%), Gaps = 44/454 (9%)
Query: 41 AALASLILTSTDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYA 100
A + +L+L TD +TLT+TL + WTP LVD+++K LWNH KAL FF L YHPTYA
Sbjct: 40 ATIVNLVL-KTDSQTLTRTLEKYPVEWTPNLVDRVLKLLWNHGPKALQFFKSLDYHPTYA 98
Query: 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160
H SSFDHAID+A RLRDY+T+WTLV RM++ LGP KTFAII ERYVSAGK DRA+KI
Sbjct: 99 HVSSSFDHAIDIAGRLRDYKTLWTLVDRMRTRRLGPNPKTFAIITERYVSAGKPDRAIKI 158
Query: 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKADVISYNVIANGWCL 219
F SMHEHGC Q LNSFNTILD+LCK K+VE A N LFKVFRG+
Sbjct: 159 FFSMHEHGCVQDLNSFNTILDVLCKSKRVEMADNKLFKVFRGR----------------- 201
Query: 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT 279
+ I+LKG+FRAGQ++EAW FFL+MKKRKCEIDVVT
Sbjct: 202 -------------------------FRILLKGFFRAGQLKEAWEFFLQMKKRKCEIDVVT 236
Query: 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
YTT+VHGFGV GE+++A+ VF+ M+ GVLPSVATYNA IQVLCKKD+VENAI VFEEM+
Sbjct: 237 YTTVVHGFGVAGEVRKAQRVFNEMIGEGVLPSVATYNAFIQVLCKKDNVENAISVFEEML 296
Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399
KGYMPNSTTYNVVIRGLCH G ME+A+EF+ RMKDDECEPNVQ YN++IRYFCDA EIE
Sbjct: 297 RKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKDDECEPNVQIYNVVIRYFCDAEEIE 356
Query: 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFN 459
+GL +FEKMG CLPNLDTYNILIS+MFVRKKSD LL AGKLLIEMV+RGF+PRKFTFN
Sbjct: 357 KGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFLPRKFTFN 416
Query: 460 RVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFKL 493
RVL+GLLL GNQ AKEILRLQSRCGRLPR+ KL
Sbjct: 417 RVLDGLLLTGNQDFAKEILRLQSRCGRLPRRLKL 450
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|186495472|ref|NP_177628.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|133778904|gb|ABO38792.1| At1g74900 [Arabidopsis thaliana] gi|332197524|gb|AEE35645.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 298/474 (62%), Positives = 356/474 (75%), Gaps = 37/474 (7%)
Query: 26 TTTSPAPLPPAAADPAALASLILTSTDPRTLTQT----LHCPSLHWTPQLVDQIIKRLWN 81
T+ + A L P AD AA+A LIL+S P T Q L + WTP LV+ ++KRLWN
Sbjct: 11 TSAAGANLKPPPADSAAIAKLILSS--PNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWN 68
Query: 82 HALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
H KAL FF+ L ++H Y H SSFD AID+AARL + TVW+L+HRM+SL +GP+ KT
Sbjct: 69 HGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKT 128
Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
FAI+AERY SAGK D+AVK+FL+MHEHGC Q L SFNTILD+LCK K+VEKAY LF+ R
Sbjct: 129 FAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 188
Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
G+F D ++YNVI NGWCL+KRT KALEVLKEMV+RG+NPNLTTYN +LKG+FRAGQI
Sbjct: 189 GRFSVDTVTYNVILNGWCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH 248
Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
AW FFLEMKKR CEIDVVTYTT+VHGFGV GEIKRARNVFD M+ GVLPSVATYNAMIQ
Sbjct: 249 AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQ 308
Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
VLCKKD+VENA+++FEEMV +GY PN TTYNV+IRGL H GE R E + RM+++ CEP
Sbjct: 309 VLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEP 368
Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
N QTYN++IRY+ + E+E+ L LFEKMGSG CLPNLDTYNILIS MFVRK+S+D++VA
Sbjct: 369 NFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVA- 427
Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG-RLPRQFKL 493
GNQ AKEILRLQS+ G RL R+F+L
Sbjct: 428 ----------------------------GNQAFAKEILRLQSKSGSRLLRKFRL 453
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|51971677|dbj|BAD44503.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust.
Identities = 297/474 (62%), Positives = 355/474 (74%), Gaps = 37/474 (7%)
Query: 26 TTTSPAPLPPAAADPAALASLILTSTDPRTLTQT----LHCPSLHWTPQLVDQIIKRLWN 81
T+ + A L P AD AA+A LIL+S P T Q L + WTP LV+ ++KRLWN
Sbjct: 5 TSAAGANLKPPPADSAAIAKLILSS--PNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWN 62
Query: 82 HALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKT 140
H KAL FF+ L ++H Y H SSFD AID+AARL + TVW+L+HRM+SL +GP+ KT
Sbjct: 63 HGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHLHPTVWSLIHRMRSLRIGPSPKT 122
Query: 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200
FAI+AERY SAGK D+AVK+FL+MHEHGC Q L SFNTILD+LCK K+VEKAY LF+ R
Sbjct: 123 FAIVAERYASAGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALR 182
Query: 201 GKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260
G+F D ++YNVI NGWCL+KRT K LEVLKEMV+RG+NPNLTTYN +LKG+FRAGQI
Sbjct: 183 GRFSVDTVTYNVILNGWCLIKRTPKTLEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRH 242
Query: 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320
AW FFLEMKKR CEIDVVTYTT+VHGFGV GEIKRARNVFD M+ GVLPSVATYNAMIQ
Sbjct: 243 AWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDEMIREGVLPSVATYNAMIQ 302
Query: 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380
VLCKKD+VENA+++FEEMV +GY PN TTYNV+IRGL H GE R E + RM+++ CEP
Sbjct: 303 VLCKKDNVENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQRMENEGCEP 362
Query: 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAG 440
N QTYN++IRY+ + E+E+ L LFEKMGSG CLPNLDTYNILIS MFVRK+S+D++VA
Sbjct: 363 NFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYNILISGMFVRKRSEDMVVA- 421
Query: 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG-RLPRQFKL 493
GNQ AKEILRLQS+ G RL R+F+L
Sbjct: 422 ----------------------------GNQAFAKEILRLQSKSGSRLLRKFRL 447
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297839365|ref|XP_002887564.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333405|gb|EFH63823.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1513), Expect = e-165, Method: Compositional matrix adjust.
Identities = 296/476 (62%), Positives = 358/476 (75%), Gaps = 37/476 (7%)
Query: 23 SPLTTTSPAPLPPAAADPAALASLILT---STDPRTLTQTLHCPSLHWTPQLVDQIIKRL 79
S T+ + A L P ADPAA+A LIL+ + D + + T P WTP LV+ ++KRL
Sbjct: 8 SLCTSAAGANLKPPPADPAAIAKLILSFHQTLDDQFILSTKTTP---WTPNLVNSVLKRL 64
Query: 80 WNHALKALHFFNIL-SYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ 138
WNH KAL FF+ L ++H Y H SSFD AID+AARL + TVW+L+HRM+SL +GP+
Sbjct: 65 WNHGPKALQFFHFLDNHHREYVHDASSFDLAIDIAARLHIHPTVWSLIHRMRSLRIGPSP 124
Query: 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198
KTFAI+AERY S+GK D+AVK+FL+MHEHGC Q L SFNTILD+LCK K+VEKAY LF+
Sbjct: 125 KTFAIVAERYASSGKPDKAVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRA 184
Query: 199 FRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258
RG+F AD ++YNVI NGWCL+KRT KALEVLKEMVDRG+NPNLTTYN +L+G+FRAGQI
Sbjct: 185 LRGRFSADTVTYNVIVNGWCLIKRTPKALEVLKEMVDRGINPNLTTYNTMLQGFFRAGQI 244
Query: 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318
+AW FFLEMKKR CEIDVVTYTT+VHGFGV GEIKR RNVFD M+ GVLPSVATYNA
Sbjct: 245 RQAWEFFLEMKKRNCEIDVVTYTTVVHGFGVAGEIKRTRNVFDEMIREGVLPSVATYNAF 304
Query: 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
IQVLCKKDSVENA+++FEEMV KGY PN TTYNV+IRGL H G+ R E + RM+++ C
Sbjct: 305 IQVLCKKDSVENAVVMFEEMVRKGYEPNVTTYNVLIRGLFHAGKFSRGEELMQRMENEGC 364
Query: 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438
EPN QTYN++IRY+ + E+E+ L LFEKMG+G CLPNLDTYNILIS MFVRK+S+D++V
Sbjct: 365 EPNFQTYNMMIRYYSECSEVEKALGLFEKMGTGDCLPNLDTYNILISGMFVRKRSEDMVV 424
Query: 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC-GRLPRQFKL 493
A GNQ AKEILRLQS+ GRL R+F+L
Sbjct: 425 A-----------------------------GNQAFAKEILRLQSKSGGRLLRKFRL 451
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 493 | ||||||
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.823 | 0.796 | 0.301 | 4.9e-53 | |
| TAIR|locus:2012883 | 537 | AT1G20300 [Arabidopsis thalian | 0.730 | 0.670 | 0.302 | 5.2e-49 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.774 | 0.506 | 0.307 | 4.7e-48 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.738 | 0.588 | 0.293 | 8.8e-47 | |
| TAIR|locus:2204913 | 491 | AT1G02420 "AT1G02420" [Arabido | 0.803 | 0.806 | 0.291 | 6.2e-46 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.732 | 0.569 | 0.290 | 1.3e-45 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.732 | 0.573 | 0.287 | 2.1e-45 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.673 | 0.605 | 0.303 | 7.1e-45 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.732 | 0.566 | 0.276 | 1.9e-44 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.811 | 0.764 | 0.272 | 3.9e-44 |
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 126/418 (30%), Positives = 225/418 (53%)
Query: 47 ILTS-TDPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSS 105
ILT TD + T L+ S+ +P L+++++K+L N + AL F + H+ S+
Sbjct: 72 ILTKFTDSKVET-LLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHTTSN 130
Query: 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165
++ I+ +++ ++ +W+LV MK+ L +++TFA+I+ RY A K A+ F M
Sbjct: 131 YNALIESLGKIKQFKLIWSLVDDMKAKKL-LSKETFALISRRYARARKVKEAIGAFHKME 189
Query: 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLF-KVFRGKFKADVISYNVIANGWCLVKRTN 224
E G + + FN +LD L K + V A +F K+ + +F+ D+ SY ++ GW
Sbjct: 190 EFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRFEPDIKSYTILLEGWGQELNLL 249
Query: 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284
+ EV +EM D G P++ Y I++ + +A + EEA RFF EM++R C+ + +++
Sbjct: 250 RVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIRFFNEMEQRNCKPSPHIFCSLI 309
Query: 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344
+G G ++ A F+ + G TYNA++ C +E+A +EM KG
Sbjct: 310 NGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVG 369
Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLEL 404
PN+ TY++++ H M+R+ E + CEP V TY I++R FC+ ++ +++
Sbjct: 370 PNARTYDIILH---HLIRMQRSKEAYEVYQTMSCEPTVSTYEIMVRMFCNKERLDMAIKI 426
Query: 405 FEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
+++M G GV LP + ++ LI+++ K D+ A + EM+D G P F+R+
Sbjct: 427 WDEMKGKGV-LPGMHMFSSLITALCHENKLDE---ACEYFNEMLDVGIRPPGHMFSRL 480
|
|
| TAIR|locus:2012883 AT1G20300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
Identities = 111/367 (30%), Positives = 196/367 (53%)
Query: 68 TPQLVDQIIKRLWN--HAL---KALHFFNILSYHPTYAH-SPSSFDHAIDLAARLRDYRT 121
+P +V +I++ + H + ++L FFN + Y H SP ++ IDL+ ++R +
Sbjct: 110 SPSVVRCVIEKCGSVRHGIPLHQSLAFFNWATSRDDYDHKSPHPYNEMIDLSGKVRQFDL 169
Query: 122 VWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181
W L+ MKS ++ + +TF I+ RYV AG A AV F M ++GC +F+ ++
Sbjct: 170 AWHLIDLMKSRNVEISIETFTILIRRYVRAGLASEAVHCFNRMEDYGCVPDKIAFSIVIS 229
Query: 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
L ++++ +A + F + +F+ DVI Y + GWC ++A +V KEM G+ PN
Sbjct: 230 NLSRKRRASEAQSFFDSLKDRFEPDVIVYTNLVRGWCRAGEISEAEKVFKEMKLAGIEPN 289
Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301
+ TY+IV+ R GQI A F +M C + +T+ ++ G ++ V++
Sbjct: 290 VYTYSIVIDALCRCGQISRAHDVFADMLDSGCAPNAITFNNLMRVHVKAGRTEKVLQVYN 349
Query: 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361
M G P TYN +I+ C+ +++ENA+ V M+ K N++T+N + R +
Sbjct: 350 QMKKLGCEPDTITYNFLIEAHCRDENLENAVKVLNTMIKKKCEVNASTFNTIFRYIEKKR 409
Query: 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421
++ A +M + +CEPN TYNIL+R F + + L++ ++M PN++TY
Sbjct: 410 DVNGAHRMYSKMMEAKCEPNTVTYNILMRMFVGSKSTDMVLKMKKEMDDKEVEPNVNTYR 469
Query: 422 ILISSMF 428
+L++ MF
Sbjct: 470 LLVT-MF 475
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 505 (182.8 bits), Expect = 4.7e-48, P = 4.7e-48
Identities = 119/387 (30%), Positives = 194/387 (50%)
Query: 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163
S+F+ I R R ++ M S L P +KTF + + Y+ G D A++I
Sbjct: 190 STFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQ 249
Query: 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVK 221
M E GC S S N I+ CKE +VE A N + + F D ++N + NG C
Sbjct: 250 MVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAG 309
Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281
A+E++ M+ G +P++ TYN V+ G + G+++EA +M R C + VTY
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYN 369
Query: 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341
T++ +++ A + + + G+LP V T+N++IQ LC + A+ +FEEM K
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429
Query: 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401
G P+ TYN++I LC G+++ AL + +M+ C +V TYN LI FC A +
Sbjct: 430 GCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREA 489
Query: 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461
E+F++M N TYN LI + ++ +D A +L+ +M+ G P K+T+N +
Sbjct: 490 EEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVED---AAQLMDQMIMEGQKPDKYTYNSL 546
Query: 462 XXXXXXXXXXXXAKEILRLQSRCGRLP 488
A +I++ + G P
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEP 573
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 108/368 (29%), Positives = 181/368 (49%)
Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
L+ RM P + T+ + R +G + A+ +F M E + S+ ++ ++D LC
Sbjct: 197 LIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVIDSLC 256
Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
K+ + A +LF K KADV++Y+ + G C + + ++L+EM+ R + P++
Sbjct: 257 KDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVV 316
Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
T++ ++ + + G++ EA + EM R D +TY +++ GF + A +FD M
Sbjct: 317 TFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLM 376
Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
V+ G P + TY+ +I CK V++ + +F E+ KG +PN+ TYN ++ G C +G++
Sbjct: 377 VSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKL 436
Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
A E M P+V TY IL+ CD GE+ + LE+FEKM + YNI+
Sbjct: 437 NAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNII 496
Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVXXXXXXXXXXXXAKEILRLQSR 483
I M K DD A L + D+G P T+N + A + R
Sbjct: 497 IHGMCNASKVDD---AWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553
Query: 484 CGRLPRQF 491
G P F
Sbjct: 554 DGCTPDDF 561
|
|
| TAIR|locus:2204913 AT1G02420 "AT1G02420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 121/415 (29%), Positives = 218/415 (52%)
Query: 56 LTQTLHCPSLHWTPQLVDQIIKRL-WNHA--LKALHFFNILSYHPTYAHSPSSFDHAIDL 112
L ++L +H + L+D+++KR+ ++H ++ L F+ S + HS S D + +
Sbjct: 58 LKESLSSSGIHLSKDLIDRVLKRVRFSHGNPIQTLEFYRYASAIRGFYHSSFSLDTMLYI 117
Query: 113 AARLRDYRTVWTLV--HRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170
R R + +W L+ + K SL + +T ++ R + V+ F +
Sbjct: 118 LGRNRKFDQIWELLIETKRKDRSL-ISPRTMQVVLGRVAKLCSVRQTVESFWKF-KRLVP 175
Query: 171 QSLNS--FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228
++ FN +L LC+EK + A N++ + +F+ D+ ++N++ +GW K + +A
Sbjct: 176 DFFDTACFNALLRTLCQEKSMTDARNVYHSLKHQFQPDLQTFNILLSGW---KSSEEAEA 232
Query: 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288
+EM +GL P++ TYN ++ Y + +IE+A++ +M++ + DV+TYTT++ G G
Sbjct: 233 FFEEMKGKGLKPDVVTYNSLIDVYCKDREIEKAYKLIDKMREEEETPDVITYTTVIGGLG 292
Query: 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348
++G+ +AR V M G P VA YNA I+ C + +A + +EMV KG PN+T
Sbjct: 293 LIGQPDKAREVLKEMKEYGCYPDVAAYNAAIRNFCIARRLGDADKLVDEMVKKGLSPNAT 352
Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
TYN+ R L ++ R+ E RM +EC PN Q+ LI+ F +++ + L+E M
Sbjct: 353 TYNLFFRVLSLANDLGRSWELYVRMLGNECLPNTQSCMFLIKMFKRHEKVDMAMRLWEDM 412
Query: 409 GSGVCLPNLDTYNILISSMFVRKKSDDLLV--AGKLLIEMVDRGFMPRKFTFNRV 461
+ +Y+ L+S + + D V A K L+EMV++G P +F R+
Sbjct: 413 ----VVKGFGSYS-LVSDVLLDLLCDLAKVEEAEKCLLEMVEKGHRPSNVSFKRI 462
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
Identities = 106/365 (29%), Positives = 184/365 (50%)
Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
LV RM P T+ ++ G D A+ + M + FNTI+D LC
Sbjct: 212 LVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAKIEADVVIFNTIIDSLC 271
Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
K + V+ A NLFK K + +V++Y+ + + C R + A ++L +M+++ +NPNL
Sbjct: 272 KYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLV 331
Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
T+N ++ + + G+ EA + + +M KR + D+ TY ++V+GF + + +A+ +F+ M
Sbjct: 332 TFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFM 391
Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
V+ P V TYN +I+ CK VE+ +F EM +G + ++ TY +I+GL H G+
Sbjct: 392 VSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDC 451
Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
+ A + +M D P++ TY+IL+ C+ G++E+ LE+F+ M ++ Y +
Sbjct: 452 DNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTM 511
Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVXXXXXXXXXXXXAKEILRLQSR 483
I M K DD L + +G P T+N + A +L+
Sbjct: 512 IEGMCKAGKVDD---GWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKE 568
Query: 484 CGRLP 488
G LP
Sbjct: 569 DGPLP 573
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 477 (173.0 bits), Expect = 2.1e-45, P = 2.1e-45
Identities = 105/365 (28%), Positives = 183/365 (50%)
Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
L+ RM + P T+ ++ G D A + M + + +NTI+D LC
Sbjct: 208 LIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLC 267
Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
K K ++ A NLFK K + +V++Y+ + + C R + A +L +M++R +NP++
Sbjct: 268 KYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVF 327
Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
T++ ++ + + G++ EA + + EM KR + +VTY+++++GF + + A+ +F+ M
Sbjct: 328 TFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFM 387
Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
V+ P V TYN +I+ CK VE + VF EM +G + N+ TYN++I+GL G+
Sbjct: 388 VSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDC 447
Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
+ A E M D PN+ TYN L+ C G++E+ + +FE + P + TYNI+
Sbjct: 448 DMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIM 507
Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVXXXXXXXXXXXXAKEILRLQSR 483
I M K +D L + +G P +N + A + +
Sbjct: 508 IEGMCKAGKVED---GWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKE 564
Query: 484 CGRLP 488
G LP
Sbjct: 565 DGTLP 569
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 102/336 (30%), Positives = 177/336 (52%)
Query: 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183
+++ +M L P + T + + + AV + M E G + + ++N I+D L
Sbjct: 141 SILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSL 200
Query: 184 CKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL 242
CK K+V A++ FK K + +V++Y + NG C R + A +L +M+ + + PN+
Sbjct: 201 CKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNV 260
Query: 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302
TY+ +L + + G++ EA F EM + + D+VTY+++++G + I A +FD
Sbjct: 261 ITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDL 320
Query: 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362
MV+ G L V +YN +I CK VE+ + +F EM +G + N+ TYN +I+G G+
Sbjct: 321 MVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 380
Query: 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422
+++A EF +M P++ TYNIL+ CD GE+E+ L +FE M ++ TY
Sbjct: 381 VDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTT 440
Query: 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458
+I M K ++ A L + +G P T+
Sbjct: 441 VIRGMCKTGKVEE---AWSLFCSLSLKGLKPDIVTY 473
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 101/365 (27%), Positives = 182/365 (49%)
Query: 125 LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184
L+ +M P T+ + +G+ A+++ M E + ++ I+D LC
Sbjct: 215 LIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLC 274
Query: 185 KEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243
K ++ A+NLF K ++I+YN++ G+C R + ++L++M+ R +NPN+
Sbjct: 275 KHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVV 334
Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
T+++++ + + G++ EA EM R D +TYT+++ GF + +A + D M
Sbjct: 335 TFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLM 394
Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
V+ G P++ T+N +I CK + +++ + +F +M +G + ++ TYN +I+G C G++
Sbjct: 395 VSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKL 454
Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423
A E M + PN+ TY IL+ CD GE E+ LE+FEK+ ++ YNI+
Sbjct: 455 NVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNII 514
Query: 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVXXXXXXXXXXXXAKEILRLQSR 483
I M K DD A L + +G P T+N + A+ + R
Sbjct: 515 IHGMCNASKVDD---AWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571
Query: 484 CGRLP 488
G P
Sbjct: 572 DGHAP 576
|
|
| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 3.9e-44, P = 3.9e-44
Identities = 110/404 (27%), Positives = 194/404 (48%)
Query: 56 LTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR 115
L TL S + LV+Q++KR N A FF P +AHS S+ +++
Sbjct: 55 LEHTLVAYSPRVSSNLVEQVLKRCKNLGFPAHRFFLWARRIPDFAHSLESYHILVEILGS 114
Query: 116 LRDYRTVWTLVHRMKSLSLGP-TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174
+ + +W + + + + K F I+ Y A A + F M E G + ++
Sbjct: 115 SKQFALLWDFLIEAREYNYFEISSKVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVD 174
Query: 175 SFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEM 233
+ +L LC +K V A F +G +Y+++ GW ++ + A +V EM
Sbjct: 175 DLDQLLHSLCDKKHVNHAQEFFGKAKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEM 234
Query: 234 VDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293
++R +L YN +L ++G ++ ++ F EM + D ++ +H + G++
Sbjct: 235 LERNCVVDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGDV 294
Query: 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353
A V D M ++P+V T+N +I+ LCK + V++A L+ +EM+ KG P++ TYN +
Sbjct: 295 HSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYNSI 354
Query: 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413
+ C E+ RA + + RM +C P+ TYN++++ G +R E++E M
Sbjct: 355 MAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKF 414
Query: 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457
P + TY ++I + VRKK L A + M+D G P T
Sbjct: 415 YPTVATYTVMIHGL-VRKKGK-LEEACRYFEMMIDEGIPPYSTT 456
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9S7R4 | PP125_ARATH | No assigned EC number | 0.6814 | 0.9452 | 0.9668 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 493 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-25 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-15 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-13 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-25
Identities = 76/321 (23%), Positives = 147/321 (45%), Gaps = 9/321 (2%)
Query: 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVIS 209
+GK D ++F M G ++++F ++D + +V KA+ + + R K K D +
Sbjct: 485 SGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVV 544
Query: 210 YNVIANGWCLVKRTNKALEVLKEMVDRG--LNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267
+N + + ++A +VL EM ++P+ T ++K AGQ++ A +
Sbjct: 545 FNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604
Query: 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327
+ + + YT V+ G+ A +++D M GV P ++A++ V
Sbjct: 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD 664
Query: 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387
++ A + ++ +G + +Y+ ++ + ++ALE +K + P V T N
Sbjct: 665 LDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724
Query: 388 LIRYFCDAGEIERGLELFEKM-GSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446
LI C+ ++ + LE+ +M G+C PN TY+IL + ++ DD V LL +
Sbjct: 725 LITALCEGNQLPKALEVLSEMKRLGLC-PNTITYSIL---LVASERKDDADVGLDLLSQA 780
Query: 447 VDRGFMPRKFTFNRVLNGLLL 467
+ G P R + GL L
Sbjct: 781 KEDGIKP-NLVMCRCITGLCL 800
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 1e-16
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
P++ TYN ++ GY + G++EEA + F EMKKR + +V TY+ ++ G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.7 bits (177), Expect = 4e-16
Identities = 24/50 (48%), Positives = 31/50 (62%)
Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359
P V TYN +I CKK VE A+ +F EM +G PN TY+++I GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.1 bits (173), Expect = 1e-15
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394
P+ TYN +I G C G++E AL+ MK +PNV TY+ILI C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 1e-15
Identities = 70/285 (24%), Positives = 112/285 (39%), Gaps = 53/285 (18%)
Query: 129 MKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF----NTILDLLC 184
M+ ++ P + T A + G D VK +HE R+ L S+ N ++++
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVK----LHELAERKGLISYVVVANALIEMYS 435
Query: 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244
K K ++KA +F K DVIS+ I G L R +AL ++M+ L PN T
Sbjct: 436 KCKCIDKALEVFHNIPEK---DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVT 491
Query: 245 Y-----------------------------------NIVLKGYFRAGQIEEAWRFFLEMK 269
N +L Y R G++ AW F
Sbjct: 492 LIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF---- 547
Query: 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329
E DVV++ ++ G+ G+ A +F+ MV GV P T+ +++ + V
Sbjct: 548 -NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606
Query: 330 NAILVFEEMVGK-GYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373
+ F M K PN Y V+ L G++ A F+ +M
Sbjct: 607 QGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 73.0 bits (179), Expect = 1e-13
Identities = 53/230 (23%), Positives = 107/230 (46%), Gaps = 8/230 (3%)
Query: 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
++D+ K +E A VF G + +++N + G+ L + +AL + EM D G+
Sbjct: 265 LIDMYSKCGDIEDAR---CVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321
Query: 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298
+ + T++I+++ + R +E A + + + +D+V T +V + G ++ ARN
Sbjct: 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARN 381
Query: 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358
VFD M ++ ++NA+I A+ +FE M+ +G PN T+ V+
Sbjct: 382 VFDRMPRKNLI----SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437
Query: 359 HTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEK 407
++G E+ E M ++ +P Y +I G ++ + +
Sbjct: 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 3e-13
Identities = 80/362 (22%), Positives = 139/362 (38%), Gaps = 52/362 (14%)
Query: 85 KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144
+AL F IL + S++D ++ L+ R V + ++S P Q +
Sbjct: 105 EALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164
Query: 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK 204
+V G A ++F M E ++L S+ TI+ L +A+ LF+
Sbjct: 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGS 220
Query: 205 AD-----VISYNVIANGW----------CLVK---------------------RTNKALE 228
V+ A C++K A
Sbjct: 221 DAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARC 280
Query: 229 VLKEMVDRGLNPNLTT--YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286
V M P TT +N +L GY G EEA + EM+ ID T++ ++
Sbjct: 281 VFDGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRI 334
Query: 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346
F + ++ A+ G++ G + A++ + K +E+A VF+ M K N
Sbjct: 335 FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----N 390
Query: 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
++N +I G + G +A+E RM + PN T+ ++ +G E+G E+F+
Sbjct: 391 LISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQ 450
Query: 407 KM 408
M
Sbjct: 451 SM 452
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 1e-12
Identities = 21/48 (43%), Positives = 30/48 (62%)
Query: 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427
P+V TYN LI +C G++E L+LF +M PN+ TY+ILI +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 1e-12
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324
DVVTY T++ G+ G+++ A +F+ M G+ P+V TY+ +I LCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 60.9 bits (149), Expect = 3e-12
Identities = 18/47 (38%), Positives = 32/47 (68%)
Query: 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252
DV++YN + +G+C + +AL++ EM RG+ PN+ TY+I++ G
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (167), Expect = 3e-12
Identities = 83/395 (21%), Positives = 136/395 (34%), Gaps = 92/395 (23%)
Query: 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFR--GKFKADVISYNVIANGWCLVKRTNKAL 227
R+S S + ++ L + +A LF++ F +Y+ + +K
Sbjct: 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVK 143
Query: 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287
V + G P+ N VL + + G + +A R F EM +R ++ ++ TI+ G
Sbjct: 144 AVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGL 199
Query: 288 GVVGEIKRARNVFDGM-----------------------------------VNGGVLPSV 312
G + A +F M + GV+
Sbjct: 200 VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDT 259
Query: 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT--YNVVIRGLCHTGEMERALEFV 370
A+I + K +E+A VF+ MP TT +N ++ G G E AL
Sbjct: 260 FVSCALIDMYSKCGDIEDARCVFDG------MPEKTTVAWNSMLAGYALHGYSEEALCLY 313
Query: 371 GRMKDDECEPNVQTYNILIRYF-----------CDAGEIERGLEL--------------- 404
M+D + T++I+IR F AG I G L
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373
Query: 405 ---------FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK 455
F++M NL ++N LI+ + A ++ M+ G P
Sbjct: 374 GRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTK---AVEMFERMIAEGVAPNH 426
Query: 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL-PR 489
TF VL+ G EI + S R+ PR
Sbjct: 427 VTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 63.0 bits (153), Expect = 2e-10
Identities = 49/240 (20%), Positives = 101/240 (42%), Gaps = 38/240 (15%)
Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVL 230
+L++FN ++ + + ++ A + ++ + KAD Y + + + + EV
Sbjct: 436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495
Query: 231 KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290
EMV+ G+ N+ T+ ++ G RAGQ+ +A FG
Sbjct: 496 HEMVNAGVEANVHTFGALIDGCARAGQVAKA-------------------------FGAY 530
Query: 291 GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGY--MPNST 348
G I R++NV P +NA+I + +V+ A V EM + + P+
Sbjct: 531 G-IMRSKNV---------KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI 580
Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
T +++ + G+++RA E + + + + Y I + G+ + L +++ M
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 2e-08
Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 8/159 (5%)
Query: 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285
A V +M +R +L ++N+++ GY +AG +EA + M DV T+ ++
Sbjct: 140 AWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195
Query: 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
G + ++ R R V +V G V NA+I + K V +A LVF+ M +
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR---- 251
Query: 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384
+ ++N +I G GE LE M++ +P++ T
Sbjct: 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMT 290
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 2e-08
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277
TYN ++ G +AG++EEA F EMK+R E DV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 4e-08
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 4/163 (2%)
Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303
++N ++ GYF G+ E F M++ + D++T T+++ ++G+ + R + +
Sbjct: 255 SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYV 314
Query: 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM 363
V G V+ N++IQ+ S A VF M K + ++ +I G G
Sbjct: 315 VKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAV----SWTAMISGYEKNGLP 370
Query: 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE 406
++ALE M+ D P+ T ++ G+++ G++L E
Sbjct: 371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHE 413
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (132), Expect = 7e-08
Identities = 72/344 (20%), Positives = 134/344 (38%), Gaps = 37/344 (10%)
Query: 79 LWN-HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT 137
WN H K ++ + + H +S A+ +L + + L+ M+ L +
Sbjct: 29 YWNFHGRKRSRGLSVAASSSSSTHDSNSQLRALCSHGQLE--QALK-LLESMQELRVPVD 85
Query: 138 QKTFAIIA-----ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192
+ + + +R V G R LS H + N +L + + ++ A
Sbjct: 86 EDAYVALFRLCEWKRAVEEGS--RVCSRALSSHP---SLGVRLGNAMLSMFVRFGELVHA 140
Query: 193 YNLFKVFRGKF-KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251
+ +F GK + D+ S+NV+ G+ ++AL + M+ G+ P++ T+ VL+
Sbjct: 141 WYVF----GKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196
Query: 252 Y-----FRAGQIEEA--WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
G+ A RF E+ ++DVV ++ + G++ AR VFD M
Sbjct: 197 CGGIPDLARGREVHAHVVRFGFEL-----DVDVV--NALITMYVKCGDVVSARLVFDRMP 249
Query: 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364
+ ++NAMI + + +F M P+ T VI G+
Sbjct: 250 RRDCI----SWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305
Query: 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
E G + +V N LI+ + G ++F +M
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 7e-08
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKM 408
+P+V TYN LI C AG ++ +EL ++M
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 1e-07
Identities = 36/144 (25%), Positives = 71/144 (49%), Gaps = 8/144 (5%)
Query: 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236
N +LDL + ++ A+N F + DV+S+N++ G+ + + A+E+ MV+
Sbjct: 528 NALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES 583
Query: 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK-KRKCEIDVVTYTTIVHGFGVVGEIKR 295
G+NP+ T+ +L R+G + + +F M+ K ++ Y +V G G++
Sbjct: 584 GVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTE 643
Query: 296 ARNVFDGMVNGGVLPSVATYNAMI 319
A N + M + P A + A++
Sbjct: 644 AYNFINKM---PITPDPAVWGALL 664
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 47.3 bits (114), Expect = 1e-07
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 236 RGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269
+GL P++ TYN ++ G RAG+++EA EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 6e-07
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 341 KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374
KG P+ TYN +I GLC G ++ A+E + M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 1e-06
Identities = 17/34 (50%), Positives = 21/34 (61%)
Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382
TYN +I GLC G +E ALE MK+ EP+V
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 3e-06
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273
TYN ++ GY +AG++EEA F EMK++
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 307 GVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
G+ P V TYN +I LC+ V+ A+ + +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 1e-05
Identities = 47/211 (22%), Positives = 86/211 (40%), Gaps = 13/211 (6%)
Query: 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA----GQIEEAWRFFLEMKKRKCEIDV 277
R +++L++M RGL L I +F+A ++EA+RF ++
Sbjct: 385 RIKDCIDLLEDMEKRGL---LDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLS--- 438
Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337
T+ ++ +I A V + G+ Y +I K V+ VF E
Sbjct: 439 -TFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHE 497
Query: 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397
MV G N T+ +I G G++ +A G M+ +P+ +N LI +G
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGA 557
Query: 398 IERGLELFEKMGSGV--CLPNLDTYNILISS 426
++R ++ +M + P+ T L+ +
Sbjct: 558 VDRAFDVLAEMKAETHPIDPDHITVGALMKA 588
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 2e-05
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 271 RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304
+ + DVVTY T++ G G + A + D M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKG 342
TYN++I CK +E A+ +F+EM KG
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKG 30
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347
TYN +I LCK VE A+ +F+EM +G P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCLPN 416
TYN LI C AG +E LELF++M P+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMV 234
K DV++YN + +G C R ++A+E+L EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 349 TYNVVIRGLCHTGEMERALEFVGRMKDDEC 378
TYN +I G C G++E ALE MK+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 47/232 (20%), Positives = 89/232 (38%), Gaps = 46/232 (19%)
Query: 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305
N +L + R G++ AW F +M +R D+ ++ +V G+ G A ++ M+
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365
GV P V T+ V+R ++ R
Sbjct: 181 AGVRPDVYTFPC-----------------------------------VLRTCGGIPDLAR 205
Query: 366 ALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILIS 425
E + E +V N LI + G++ +F++M C+ ++N +IS
Sbjct: 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMIS 261
Query: 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477
F ++ + L +L M + P T V++ L+G++ L +E+
Sbjct: 262 GYF---ENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 2e-04
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241
++YN + +G C R +ALE+ KEM +RG+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185
Y GK + A+K+F M + G + ++ +++ ++D LCK
Sbjct: 13 YCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.1 bits (87), Expect = 6e-04
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312
VTY T++ G G ++ A +F M G+ P V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 6e-04
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274
L TYN +L +AG + A EMK +
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLK 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 384 TYNILIRYFCDAGEIERGLELFEKM 408
TYN LI +C AG++E LELF++M
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 11/31 (35%), Positives = 22/31 (70%)
Query: 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238
++YN + +G+C + +ALE+ KEM ++G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 34.8 bits (81), Expect = 0.003
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345
+ TYNA++ L K + A+ V EEM G P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 493 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.97 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.92 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.91 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.85 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.83 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.81 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.75 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.73 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.73 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.72 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.72 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.67 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.64 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.62 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.59 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.57 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.54 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.52 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.51 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.5 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.49 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.46 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.46 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.44 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.42 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.41 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.34 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.33 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.32 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.31 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.29 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.27 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.25 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.24 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.21 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.21 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.17 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.15 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.12 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.01 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.98 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.97 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.96 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.96 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.95 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.95 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.95 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.95 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.93 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.9 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.86 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.86 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.85 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.84 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.83 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.81 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.81 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.8 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.8 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.8 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.77 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.7 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.7 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.69 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.68 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.67 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.67 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.66 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.64 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.62 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.59 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.58 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.56 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.56 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.49 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.48 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.48 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.45 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.42 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.35 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.34 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.31 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.24 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.22 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.2 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.2 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.06 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.02 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.99 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.96 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.94 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.93 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.93 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.92 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.91 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.91 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.9 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.9 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.89 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.86 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.86 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.82 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.8 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.79 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.78 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.77 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.75 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.75 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.75 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.74 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.74 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.73 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.69 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.68 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.67 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.67 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.64 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.62 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.6 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.59 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.58 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.56 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.54 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.51 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.5 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.49 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.49 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.45 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.45 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.43 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.42 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.39 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.37 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.36 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.36 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.31 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.29 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.29 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.28 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.28 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.26 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.16 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.13 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.08 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.06 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.04 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.01 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.0 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.91 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.71 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.63 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.62 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.59 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.59 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.57 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.57 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.53 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.53 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.52 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.51 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.43 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.42 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.34 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.28 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.27 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.26 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.21 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.15 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.13 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.12 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.06 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.05 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.04 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.0 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.91 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.85 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.68 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.66 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.64 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.6 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.59 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.58 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.57 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.46 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.43 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.43 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.42 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.41 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.34 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.11 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.07 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.04 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.99 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.95 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.9 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.83 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.75 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.7 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.57 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.55 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.54 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.52 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 94.44 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 94.28 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.22 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.12 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.8 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.64 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.61 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.44 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.34 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.33 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.22 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.15 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.06 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.03 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.0 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 93.0 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.85 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.77 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.53 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.42 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 92.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.99 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.67 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 91.47 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.43 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 91.41 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 91.35 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.74 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 90.71 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 90.52 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 90.51 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.5 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 90.48 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 90.19 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.12 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.88 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 89.53 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.51 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 89.3 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.04 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.03 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 88.12 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 88.02 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.45 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.29 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 87.05 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.0 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 86.96 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 86.92 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 86.77 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 86.76 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 86.65 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.48 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 86.42 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 85.95 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 85.56 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.31 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 85.04 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.98 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 84.21 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.0 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 83.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 83.53 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 83.51 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 83.4 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.05 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 82.78 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.75 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.73 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 82.32 | |
| PRK09687 | 280 | putative lyase; Provisional | 82.29 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 81.16 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.85 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 80.64 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 80.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 80.3 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 80.1 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-62 Score=496.68 Aligned_cols=417 Identities=17% Similarity=0.311 Sum_probs=397.2
Q ss_pred CHHHHHHHHHHHh--hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 011137 68 TPQLVDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145 (493)
Q Consensus 68 ~~~~~~~~l~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 145 (493)
+.......+..+. .+...|+++|++|....-.+++...++.++..|.+.|..++|+.+++.|.. |+..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 4445555556654 456899999999988766678888999999999999999999999999975 8999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCChh
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. +..||..+|+.+|.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999999999999999999999999999999999999975 57899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK--RKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
+|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999986 57899999999999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 011137 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382 (493)
Q Consensus 303 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (493)
|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++++|.+.|+.|+.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVL 462 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 462 (493)
.+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+.++ |.++|++|.+.|+.||..||+.++
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~ee---Alelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK---ALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCccc
Q 011137 463 NGLLLIGNQGLAKEILRLQSRCGRLPRQF 491 (493)
Q Consensus 463 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 491 (493)
.+|++.|+.++|.++++.|.+.|+.|+..
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999998753
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-61 Score=490.64 Aligned_cols=404 Identities=20% Similarity=0.332 Sum_probs=386.3
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.....|+++|+.+.. |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++
T Consensus 420 g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v 494 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494 (1060)
T ss_pred CCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 346789999988854 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh--CC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVD--RG 237 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~--~g 237 (493)
|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.. +..||..+|+.++.+|++.|++++|.++|++|.. .|
T Consensus 495 f~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g 574 (1060)
T PLN03218 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP 574 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999974 5889999999999999999999999999999986 67
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 238 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus 575 i~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Tyns 654 (1060)
T PLN03218 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSA 654 (1060)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (493)
+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|+
T Consensus 655 LI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~ 734 (1060)
T PLN03218 655 LVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQ 734 (1060)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----c-----
Q 011137 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL----I----- 468 (493)
Q Consensus 398 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~----- 468 (493)
+++|.++|++|.+.|+.||..+|+.++.+|++.|+.++ |.+++.+|.+.|+.||..+|+.++..|.+ .
T Consensus 735 ~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~---A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~ 811 (1060)
T PLN03218 735 LPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV---GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGE 811 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999 99999999999999999999999876432 1
Q ss_pred --------------CCHHHHHHHHHHHHhcCCCCcccc
Q 011137 469 --------------GNQGLAKEILRLQSRCGRLPRQFK 492 (493)
Q Consensus 469 --------------g~~~~a~~~~~~~~~~g~~~~~~~ 492 (493)
+..++|..+|+.|.+.|+.|+..+
T Consensus 812 ~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 812 PVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849 (1060)
T ss_pred hhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHH
Confidence 224679999999999999998654
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-57 Score=459.56 Aligned_cols=394 Identities=20% Similarity=0.282 Sum_probs=251.8
Q ss_pred HHHHHHHHHh--hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011137 71 LVDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148 (493)
Q Consensus 71 ~~~~~l~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (493)
....++..+. .++..|+++|+|+....++.|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++..|
T Consensus 89 ~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y 168 (697)
T PLN03081 89 SLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168 (697)
T ss_pred eHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 4455566554 45789999999998876778999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
++.|+++.|.++|++|.+ ||..+||.++.+|++.|++++|.++|++|.. +..|+..+|+.++.+|++.|..+.+.
T Consensus 169 ~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~ 244 (697)
T PLN03081 169 VKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244 (697)
T ss_pred hcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence 999999999999999964 7889999999999999999999999999854 35555555555555555555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|+.++|.++|++|.+.|
T Consensus 245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g 320 (697)
T PLN03081 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320 (697)
T ss_pred HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 5555555555555555555555555555555555555555432 244555555555555555555555555555555
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 011137 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387 (493)
Q Consensus 308 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 387 (493)
+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.
T Consensus 321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~ 396 (697)
T PLN03081 321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNA 396 (697)
T ss_pred CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHH
Confidence 5555555555555555555555555555555555555555555555555555555555555555543 234445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD-RGFMPRKFTFNRVLNGLL 466 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~~ 466 (493)
||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++ |.++|++|.+ .|+.|+..+|+.++.+|+
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~---a~~~f~~m~~~~g~~p~~~~y~~li~~l~ 473 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQ---GWEIFQSMSENHRIKPRAMHYACMIELLG 473 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHH---HHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence 555555555555555555555555555555555555555555555554 5555555543 345555555555555555
Q ss_pred HcCCHHHHHHHHH
Q 011137 467 LIGNQGLAKEILR 479 (493)
Q Consensus 467 ~~g~~~~a~~~~~ 479 (493)
+.|+.++|.++++
T Consensus 474 r~G~~~eA~~~~~ 486 (697)
T PLN03081 474 REGLLDEAYAMIR 486 (697)
T ss_pred hcCCHHHHHHHHH
Confidence 5555555544443
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-57 Score=466.25 Aligned_cols=406 Identities=18% Similarity=0.240 Sum_probs=365.7
Q ss_pred HHHHHHHHHHh--hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011137 70 QLVDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147 (493)
Q Consensus 70 ~~~~~~l~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (493)
.+.+.++..+. .+...|.++|+.+. .+|..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++
T Consensus 122 ~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~ 196 (857)
T PLN03077 122 RLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRT 196 (857)
T ss_pred hHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHH
Confidence 33344455433 34567888888875 358889999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
|...++++.+.+++..+.+.|+.|+..++|.|+.+|++.|++++|.++|++|.. +|..+||.++.+|++.|++++|+
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~n~li~~~~~~g~~~eAl 273 (857)
T PLN03077 197 CGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISWNAMISGYFENGECLEGL 273 (857)
T ss_pred hCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchhHHHHHHHHhCCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999874 59999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.+.|..||..+|+.|+.+|++.|++++|.++|++|..
T Consensus 274 ~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-- 351 (857)
T PLN03077 274 ELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-- 351 (857)
T ss_pred HHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 011137 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387 (493)
Q Consensus 308 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 387 (493)
||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.
T Consensus 352 --~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 352 --KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred --CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 688899999999999999999999999999999999999999999999999999999999999998888888888888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCC------------------------------C------------------------
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGV------------------------------C------------------------ 413 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~------------------------------~------------------------ 413 (493)
|+.+|++.|++++|.++|++|.+.+ +
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~ 509 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGK 509 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhH
Confidence 8888888888888888887775431 1
Q ss_pred -----------------------------------------CCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCC
Q 011137 414 -----------------------------------------LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFM 452 (493)
Q Consensus 414 -----------------------------------------~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~ 452 (493)
.||..+|+.+|.+|++.|+.++ |.++|++|.+.|+.
T Consensus 510 ~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~---A~~lf~~M~~~g~~ 586 (857)
T PLN03077 510 EIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSM---AVELFNRMVESGVN 586 (857)
T ss_pred HHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCC
Confidence 3456678888888888888888 99999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcCCCCcc
Q 011137 453 PRKFTFNRVLNGLLLIGNQGLAKEILRLQS-RCGRLPRQ 490 (493)
Q Consensus 453 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~g~~~~~ 490 (493)
||..||+.++.+|.+.|++++|.++|+.|. ++|+.|+.
T Consensus 587 Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 587 PDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred CCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 999999999999999999999999999998 78988863
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-56 Score=450.27 Aligned_cols=402 Identities=18% Similarity=0.270 Sum_probs=340.0
Q ss_pred CCCHHHHHHHHHHHhh--ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH
Q 011137 66 HWTPQLVDQIIKRLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI 143 (493)
Q Consensus 66 ~~~~~~~~~~l~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 143 (493)
.++...+..++..+.. ..+.|.+++..+... |+.|+..+||.++..|++.|+++.|.++|++|.+ ||..+|+.
T Consensus 120 ~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~ 194 (697)
T PLN03081 120 TLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGT 194 (697)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHH
Confidence 4455555555555433 234455555555443 4455555555555555555555555555555542 45555555
Q ss_pred HHHHHHHcCCHHHHHHHHHHH-----------------------------------HhCCCCCCHHHHHHHHHHHHccCC
Q 011137 144 IAERYVSAGKADRAVKIFLSM-----------------------------------HEHGCRQSLNSFNTILDLLCKEKK 188 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~-----------------------------------~~~~~~~~~~~~~~ll~~~~~~g~ 188 (493)
++.+|++.|++++|+++|++| .+.|+.+|..+||.|+.+|++.|+
T Consensus 195 li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~ 274 (697)
T PLN03081 195 IIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGD 274 (697)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCC
Confidence 555555555555555555555 445556666777899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+++|.++|+.|.. +|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|
T Consensus 275 ~~~A~~vf~~m~~---~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m 351 (697)
T PLN03081 275 IEDARCVFDGMPE---KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351 (697)
T ss_pred HHHHHHHHHhCCC---CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 9999999999875 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011137 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (493)
.+.|+.+|..+|+.|+++|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 352 ~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~ 427 (697)
T PLN03081 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427 (697)
T ss_pred HHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH
Confidence 9999999999999999999999999999999999965 699999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKD-DECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|. +.|+..+|+.++.+|
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~---~~p~~~~~~~Ll~a~ 504 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVNMWAALLTAC 504 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Confidence 999999999999999999999999986 4999999999999999999999999999998874 679999999999999
Q ss_pred hccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q 011137 428 FVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRL 487 (493)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 487 (493)
...|+.+. |..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+.|+.
T Consensus 505 ~~~g~~~~---a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 505 RIHKNLEL---GRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHcCCcHH---HHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999 8899999875 4565 679999999999999999999999999999975
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-55 Score=450.56 Aligned_cols=399 Identities=17% Similarity=0.200 Sum_probs=357.5
Q ss_pred CCHHHHHHHHHHHhh--ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHH
Q 011137 67 WTPQLVDQIIKRLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAII 144 (493)
Q Consensus 67 ~~~~~~~~~l~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 144 (493)
++....+.++..+.. +.+.|.++|+.+.. +|..+||++|.+|++.|++++|.++|++|...|+.||..+|+.+
T Consensus 220 ~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l 294 (857)
T PLN03077 220 LDVDVVNALITMYVKCGDVVSARLVFDRMPR-----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV 294 (857)
T ss_pred cccchHhHHHHHHhcCCCHHHHHHHHhcCCC-----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence 344445555555543 45789999998853 57889999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
+.+|++.|+.+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|++.|+++
T Consensus 295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~n~li~~~~~~g~~~ 371 (857)
T PLN03077 295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSWTAMISGYEKNGLPD 371 (857)
T ss_pred HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999999999999999999999999999999874 69999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
+|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|..++..+|+.|+++|++.|++++|.++|++|.
T Consensus 372 ~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~ 451 (857)
T PLN03077 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP 451 (857)
T ss_pred HHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC------
Q 011137 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC------ 378 (493)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~------ 378 (493)
+ +|..+|+.+|.+|++.|+.++|..+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+
T Consensus 452 ~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~ 526 (857)
T PLN03077 452 E----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFL 526 (857)
T ss_pred C----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCcccee
Confidence 5 5777888888888888888888888888875 4777777777777666665555555555555544433
Q ss_pred ------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcc
Q 011137 379 ------------------------EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434 (493)
Q Consensus 379 ------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 434 (493)
.+|..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.++
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVT 606 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHH
Confidence 56788899999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 435 DLLVAGKLLIEMV-DRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 435 ~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+ |.++|++|. +.|+.|+..+|+.++.+|++.|++++|.++++.|
T Consensus 607 e---a~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 607 Q---GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred H---HHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 9 999999999 6799999999999999999999999999999887
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-26 Score=238.61 Aligned_cols=385 Identities=14% Similarity=0.098 Sum_probs=213.1
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 82 HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 161 (493)
+.+.|...|+.+.... +.+..++..+...+.+.|++++|...++++...+. .+...+..++..|...|++++|.+++
T Consensus 514 ~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 590 (899)
T TIGR02917 514 NPDDAIQRFEKVLTID--PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAIL 590 (899)
T ss_pred CHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344455444443321 23444555555555555555555555555544332 33444445555555555555555555
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 011137 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 241 (493)
+.+.+.. +.+...|..+..++...|++++|...|+.+.+..+.+...+..+...+...|++++|..+++++.+.... +
T Consensus 591 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~ 668 (899)
T TIGR02917 591 NEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-N 668 (899)
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-C
Confidence 5554432 3344555555555555555555555555554444444455555555555555555555555555544322 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 321 (493)
..++..++..+...|++++|.++++.+.+... .+...+..+...+...|++++|.+.|+++...+ |+..++..++.+
T Consensus 669 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 745 (899)
T TIGR02917 669 TEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRA 745 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHH
Confidence 44555555555555555555555555555432 244555555556666666666666666655542 233445555556
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401 (493)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 401 (493)
+.+.|++++|...++.+.+... .+...+..+...|...|++++|..+|+++.+.. +.+...++.+...+...|+ .+|
T Consensus 746 ~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A 822 (899)
T TIGR02917 746 LLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRA 822 (899)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHH
Confidence 6666666666666666555432 245555556666666666666666666666553 3455566666666666666 556
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+..++++.+.. +-+...+..+...+...|++++ |.++++++++.+. .+..++..+..++.+.|+.++|.++++.+
T Consensus 823 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~---A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 823 LEYAEKALKLA-PNIPAILDTLGWLLVEKGEADR---ALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred HHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665531 2244455566666666666666 6677777776542 25666666677777777777777777665
Q ss_pred H
Q 011137 482 S 482 (493)
Q Consensus 482 ~ 482 (493)
.
T Consensus 898 ~ 898 (899)
T TIGR02917 898 L 898 (899)
T ss_pred h
Confidence 4
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.3e-25 Score=232.52 Aligned_cols=390 Identities=10% Similarity=0.067 Sum_probs=283.8
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
++.+.|...|+.+.... +.+...+..+...+...|++++|.+.++.+...++ .+..++..+...+.+.|+.++|...
T Consensus 479 ~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~ 555 (899)
T TIGR02917 479 GDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAW 555 (899)
T ss_pred CCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44556666666554432 33455566666666666666666666666665532 3556666666667777777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
++++...+ +.+...+..++..+.+.|++++|..+++.+....+.+..+|..++.++...|++++|...|+++.+....
T Consensus 556 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~- 633 (899)
T TIGR02917 556 LEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD- 633 (899)
T ss_pred HHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 77666543 3455566667777777777777777777776666666777777777777777787777777777765432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
+...+..+..++.+.|++++|..+++++.+.. +.+..++..++..+...|++++|.++++.+.+.+ +.+...+..+..
T Consensus 634 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 711 (899)
T TIGR02917 634 SALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGD 711 (899)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHH
Confidence 55667777777777788888888877777653 3356777777777888888888888888777664 345667777778
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 400 (493)
.+...|++++|...++.+...+ |+..++..+..++.+.|++++|.+.++.+.+.. +.+...+..+...|...|++++
T Consensus 712 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~ 788 (899)
T TIGR02917 712 LYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDK 788 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 8888888888888888887764 444667777888888888888888888888764 5577888888888888999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011137 401 GLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRL 480 (493)
Q Consensus 401 a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 480 (493)
|.+.|+++.+.. +.+...++.+...+...|+ .+ |+.+++++.+.. .-+..++..+...+...|++++|.++++.
T Consensus 789 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~---A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 862 (899)
T TIGR02917 789 AIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PR---ALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRK 862 (899)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HH---HHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999888763 4577888888888888888 66 888888888752 23456677778888999999999999998
Q ss_pred HHhcCC
Q 011137 481 QSRCGR 486 (493)
Q Consensus 481 ~~~~g~ 486 (493)
+.+.+.
T Consensus 863 a~~~~~ 868 (899)
T TIGR02917 863 AVNIAP 868 (899)
T ss_pred HHhhCC
Confidence 888654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-22 Score=190.29 Aligned_cols=299 Identities=11% Similarity=0.075 Sum_probs=163.3
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCC
Q 011137 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS---LNSFNTILDLLCKEKK 188 (493)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~ 188 (493)
.+...|++++|...|+++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ...+..+...|.+.|+
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 34556677777777777766542 3455666666677777777777777776665321111 1345556666666666
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL----TTYNIVLKGYFRAGQIEEAWRF 264 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~ 264 (493)
+++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..++. ..+..+...+.+.|++++|.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 666666666666554455556666666666666666666666666654432211 1233445555556666666666
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011137 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344 (493)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (493)
++++.+... .+...+..+...+.+.|++++|.++|+++.+.+......+++.++.+|.+.|++++|...++.+.+. .
T Consensus 203 ~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 666555422 2344455555555556666666666655554322111234455555555555555555555555544 2
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhcCCCCCC
Q 011137 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD---AGEIERGLELFEKMGSGVCLPN 416 (493)
Q Consensus 345 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~ 416 (493)
|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.+++..++++|.+.++.|+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 33334445555555555555555555555443 3455455544444442 2355555555555554444433
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-22 Score=188.85 Aligned_cols=302 Identities=13% Similarity=0.176 Sum_probs=242.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC----cchHHHHHHHHHhc
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD----VISYNVIANGWCLV 220 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 220 (493)
...+...|++++|+..|+++.+.+ +.+..++..+...+...|++++|..+++.+......+ ...+..++..|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445677899999999999999864 4566788889999999999999999998877642211 24678889999999
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHH
Q 011137 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID----VVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A 296 (493)
|++++|.++|+++.+... .+..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999987533 3677889999999999999999999999988654332 22456677788899999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99999988753 23466778888999999999999999999987643333456788889999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc---cCCcccHHHHHHHHHHHHHCCCCC
Q 011137 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV---RKKSDDLLVAGKLLIEMVDRGFMP 453 (493)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~~~~~~~~~A~~~~~~m~~~g~~p 453 (493)
.|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++ ++.++++|.++++.|
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~---a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKE---SLLLLRDLVGEQLKR 351 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchh---HHHHHHHHHHHHHhC
Confidence 456667788899999999999999999988874 5888888888877664 446777 899999999887777
Q ss_pred CHH
Q 011137 454 RKF 456 (493)
Q Consensus 454 ~~~ 456 (493)
++.
T Consensus 352 ~p~ 354 (389)
T PRK11788 352 KPR 354 (389)
T ss_pred CCC
Confidence 755
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-21 Score=173.91 Aligned_cols=369 Identities=14% Similarity=0.108 Sum_probs=297.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS-FNT 178 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ 178 (493)
+.-.++|..+..++-..|+++.|+.+++.+.+... .....|..+..++...|+.+.|.+.|.+.++.+ |+... ...
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcc
Confidence 34678899999999999999999999999988653 467899999999999999999999999988753 55443 344
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
+...+...|++++|...|.+.....+-=...|+.|...+-..|+...|+..|++....... =...|-.|...|...+.+
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIF 268 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcc
Confidence 5555666789999888887766655556678999999999999999999999998875332 246788899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
++|...+.+...... .....+..+...|...|+++.|++.|++.++... .-...|+.|..++-..|++.+|...|...
T Consensus 269 d~Avs~Y~rAl~lrp-n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnka 346 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRP-NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKA 346 (966)
T ss_pred hHHHHHHHHHHhcCC-cchhhccceEEEEeccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence 999999888877633 3577788888888999999999999999887532 13568899999999999999999999888
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-
Q 011137 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN-VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN- 416 (493)
Q Consensus 339 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~- 416 (493)
...... .....+.|...+.+.|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++..+ +.|+
T Consensus 347 L~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~f 421 (966)
T KOG4626|consen 347 LRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTF 421 (966)
T ss_pred HHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchH
Confidence 876322 4567888888999999999999999888765 333 55678888899999999999999998887 5676
Q ss_pred HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 417 LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 417 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
...|+.+...|-..|+.+. |++.+.+.+. +.|. ....+.|...|-..|+..+|++-++...+.
T Consensus 422 Ada~~NmGnt~ke~g~v~~---A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 422 ADALSNMGNTYKEMGDVSA---AIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred HHHHHhcchHHHHhhhHHH---HHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 5678888888888888888 8888888886 4676 567777888888899999998888877765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-19 Score=178.81 Aligned_cols=367 Identities=13% Similarity=0.034 Sum_probs=259.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 011137 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186 (493)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 186 (493)
......+.+.|++++|+..|++..... |+...|..+..+|...|++++|++.++...+.. +.+...|..+..+|...
T Consensus 131 k~~G~~~~~~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 131 KEKGNKAYRNKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence 344445555666666666666655432 345555556666666666666666666655543 33445555556666666
Q ss_pred CCHHHHHHHHHHhh------------------------------cCCCCCcchHHHHHH---------------------
Q 011137 187 KKVEKAYNLFKVFR------------------------------GKFKADVISYNVIAN--------------------- 215 (493)
Q Consensus 187 g~~~~A~~~~~~~~------------------------------~~~~~~~~~~~~l~~--------------------- 215 (493)
|++++|+..|.... ...+.+...+..+..
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 66665554332211 111111111111100
Q ss_pred ------------HH---HhcCChhHHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 011137 216 ------------GW---CLVKRTNKALEVLKEMVDRG-LNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV 278 (493)
Q Consensus 216 ------------~~---~~~~~~~~A~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 278 (493)
.+ ...+++++|.+.|++..+.+ ..| +...+..+...+...|++++|+..+++..+.... ...
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~ 366 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ 366 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence 00 12367899999999998765 233 4467888889999999999999999999887432 567
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011137 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358 (493)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 358 (493)
.|..+...+...|++++|+..|+++.+... .+..+|..+...+...|++++|...|++..+.... +...+..+..++.
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~ 444 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQY 444 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHH
Confidence 888899999999999999999999988643 36788999999999999999999999999987432 5667778888999
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH------HHHHHHHHHhccCC
Q 011137 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD------TYNILISSMFVRKK 432 (493)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~~~ 432 (493)
+.|++++|+..+++..+.. +.+...++.+...+...|++++|++.|++..+.....+.. .++.....+...|+
T Consensus 445 ~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 445 KEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999998763 4567899999999999999999999999988753211111 11222223334578
Q ss_pred cccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 433 SDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 433 ~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
+++ |.+++++.++. .|+ ...+..+...+...|++++|.++++...+..
T Consensus 524 ~~e---A~~~~~kAl~l--~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 524 FIE---AENLCEKALII--DPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHH---HHHHHHHHHhc--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 888 99999998875 354 5578889999999999999999999887654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.2e-19 Score=190.92 Aligned_cols=387 Identities=10% Similarity=0.028 Sum_probs=259.9
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHH------------HHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT-QKTF------------AIIAE 146 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~------------~~l~~ 146 (493)
..+.+.|+..|+.+.... |.+...+..+..++.+.|++++|...|++..+...... ...+ .....
T Consensus 282 ~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~ 359 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGD 359 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHH
Confidence 356678888888876543 45778888888888888999999988888877543221 1111 12244
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
.+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++.....+.+...+..+...+. .++.++|
T Consensus 360 ~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A 437 (1157)
T PRK11447 360 AALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKA 437 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHH
Confidence 5677888889998888888764 4556677778888888889999988888877665656666655555543 2344555
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 011137 227 LEVLKEMVDRGLN--------PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298 (493)
Q Consensus 227 ~~~~~~m~~~g~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 298 (493)
+.+++.+...... .....+..+...+...|++++|++.+++..+.... +...+..+...|.+.|++++|+.
T Consensus 438 ~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~ 516 (1157)
T PRK11447 438 LAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADA 516 (1157)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 5555443211000 00112333445555566666666666666555332 44555556666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHH--------------------------------------------HHHHHHHhcCCHHHHHHH
Q 011137 299 VFDGMVNGGVLPSVATYN--------------------------------------------AMIQVLCKKDSVENAILV 334 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~--------------------------------------------~li~~~~~~~~~~~a~~~ 334 (493)
.++++.+... .+...+. .+...+...|+.++|..+
T Consensus 517 ~l~~al~~~P-~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~ 595 (1157)
T PRK11447 517 LMRRLAQQKP-NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEAL 595 (1157)
T ss_pred HHHHHHHcCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHH
Confidence 6666554321 1222222 223445556666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
++. .+.+...+..+...+.+.|++++|+..|+++.+.. +.+...+..++..|...|++++|++.++.+.+.. +
T Consensus 596 l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p 668 (1157)
T PRK11447 596 LRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-N 668 (1157)
T ss_pred HHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-C
Confidence 551 23355567778888999999999999999999874 5578889999999999999999999999887742 2
Q ss_pred CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF--MP---RKFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 415 p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
.+...+..+..++...|++++ |.+++++++...- .| +...+..+...+...|++++|.+.++...
T Consensus 669 ~~~~~~~~la~~~~~~g~~~e---A~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 669 DSLNTQRRVALAWAALGDTAA---AQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred CChHHHHHHHHHHHhCCCHHH---HHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356667778888889999998 9999999886421 12 23456667778889999999999998664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-19 Score=177.75 Aligned_cols=321 Identities=9% Similarity=0.034 Sum_probs=218.5
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.++..|+.+++.+.... +.++..+..++......|+++.|...++++....+ .+...+..+...+...|++++|+..
T Consensus 56 g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 56 DETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred CCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHH
Confidence 45667777776665543 34555666666666677888888888888777643 4566777777777778888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
++++.+.. +.+...+..+..++...|++++|...++.+....+.+...+..+. .+...|++++|...++.+.+....+
T Consensus 133 l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~ 210 (656)
T PRK15174 133 AEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALE 210 (656)
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 87777653 345666777777777788888887777766554444444444433 3667788888888877776654333
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH----HHHHHHHHHHCCCCCCHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR----ARNVFDGMVNGGVLPSVATYN 316 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~ 316 (493)
+...+..+...+...|++++|+..++++.+.... +...+..+...+...|++++ |+..|++..+... .+...+.
T Consensus 211 ~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~ 288 (656)
T PRK15174 211 RQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVT 288 (656)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHH
Confidence 4445555566777778888888888877766433 56677777777777777774 6777777776532 3566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-HHHHHHHHHHHhc
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV-QTYNILIRYFCDA 395 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 395 (493)
.+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...++.+...+ |+. ..+..+..++...
T Consensus 289 ~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 289 LYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQA 365 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHC
Confidence 7777777788888888888777765322 34556667777777788888888887777652 332 3344456667777
Q ss_pred CCHHHHHHHHHHHhcC
Q 011137 396 GEIERGLELFEKMGSG 411 (493)
Q Consensus 396 g~~~~a~~~~~~~~~~ 411 (493)
|+.++|...|++..+.
T Consensus 366 G~~deA~~~l~~al~~ 381 (656)
T PRK15174 366 GKTSEAESVFEHYIQA 381 (656)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8888888888777664
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-18 Score=172.33 Aligned_cols=327 Identities=9% Similarity=0.046 Sum_probs=146.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 188 (493)
++..+.+.|++++|..+++......+ -+...+..++.+....|++++|+..++++.... +.+...+..+...+...|+
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~ 125 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQ 125 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCC
Confidence 33444445555555555555444432 223333344444444555555555555554432 2333444444445555555
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+++|...+++.....+.+...+..+...+...|++++|...++.+......+ ...+..+ ..+...|++++|...++.+
T Consensus 126 ~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 126 YATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 5555555555444434444445555555555555555555555444332221 1122111 2244445555555555554
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCC
Q 011137 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN----AILVFEEMVGKGYM 344 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~~~~~~~~ 344 (493)
.+.....+...+..+...+...|++++|+..++++.+... .+...+..+...+...|++++ |...+++..+....
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~ 282 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD 282 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence 4432222223333334444455555555555555544321 233444444555555555443 44555544443211
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH-HHHHHH
Q 011137 345 PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL-DTYNIL 423 (493)
Q Consensus 345 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~l 423 (493)
+...+..+...+...|++++|...++++.... +.+...+..+...+.+.|++++|.+.++++.+. .|+. ..+..+
T Consensus 283 -~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~ 358 (656)
T PRK15174 283 -NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYA 358 (656)
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHH
Confidence 33444444555555555555555555554432 223334444455555555555555555554442 1222 122223
Q ss_pred HHHHhccCCcccHHHHHHHHHHHH
Q 011137 424 ISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 424 i~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
..++...|+.++ |...+++..
T Consensus 359 a~al~~~G~~de---A~~~l~~al 379 (656)
T PRK15174 359 AAALLQAGKTSE---AESVFEHYI 379 (656)
T ss_pred HHHHHHCCCHHH---HHHHHHHHH
Confidence 334444455554 444454444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-20 Score=166.06 Aligned_cols=388 Identities=12% Similarity=0.052 Sum_probs=315.4
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.+..+|.+....+.... +.+....-.+-.++.+..+.+.....-....+. .+.-.++|..+...+-..|++++|+..
T Consensus 62 gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~kerg~~~~al~~ 138 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKERGQLQDALAL 138 (966)
T ss_pred cCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHhchHHHHHHH
Confidence 35678888887775443 223333334444566666666555444443333 234678999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
++.+.+.. +..+..|..+..++...|+.+.|.+.|....+-.|...-..+.+...+...|+.++|...|.+.++....
T Consensus 139 y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~- 216 (966)
T KOG4626|consen 139 YRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC- 216 (966)
T ss_pred HHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc-
Confidence 99999864 4567889999999999999999999998877665544555666777777899999999999999876432
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
=.+.|..|...+-..|+...|+..|++..+.+.. -...|-.|...|...+.++.|...|.+...... .....+..+..
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp-n~A~a~gNla~ 294 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLRP-NHAVAHGNLAC 294 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC-cchhhccceEE
Confidence 3468899999999999999999999999887433 366788899999999999999999999887532 24567888888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER 400 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 400 (493)
.|...|..+.|+..|++.++.... -...|+.|..++-..|++.+|.+.|....... +......+.|...|...|.+++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchH
Confidence 999999999999999999987322 35689999999999999999999999999874 4467788999999999999999
Q ss_pred HHHHHHHHhcCCCCCC-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 401 GLELFEKMGSGVCLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEIL 478 (493)
Q Consensus 401 a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 478 (493)
|..+|+...+ +.|. ....+.|...|.+.|+.++ |+..+++.++ +.|+ ...|+.+...|-..|+...|.+.+
T Consensus 373 A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~---Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y 445 (966)
T KOG4626|consen 373 ATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDD---AIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCY 445 (966)
T ss_pred HHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHH---HHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHH
Confidence 9999999988 4554 5678899999999999999 9999999997 6888 678888999999999999999988
Q ss_pred HHHHhc
Q 011137 479 RLQSRC 484 (493)
Q Consensus 479 ~~~~~~ 484 (493)
...+..
T Consensus 446 ~rAI~~ 451 (966)
T KOG4626|consen 446 TRAIQI 451 (966)
T ss_pred HHHHhc
Confidence 876654
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6e-18 Score=180.00 Aligned_cols=365 Identities=12% Similarity=0.032 Sum_probs=276.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHH-----------
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ-SLNSF----------- 176 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~----------- 176 (493)
....+...|++++|...|++..+..+ .+..++..+...+.+.|++++|+..|++..+..... ....|
T Consensus 275 ~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 275 QGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 35567788999999999999988753 478899999999999999999999999998754211 11112
Q ss_pred -HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 177 -NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 177 -~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
......+.+.|++++|+..|++.....+.+...+..+...+...|++++|++.|+++.+.... +...+..+...+. .
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-h
Confidence 122446778999999999999998887778888999999999999999999999999976443 4566777777764 5
Q ss_pred CCHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011137 256 GQIEEAWRFFLEMKKRKC--------EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 327 (493)
++.++|..+++.+..... ......+..+...+...|++++|++.|++.++... -+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence 678999988876543210 01123455677888999999999999999998643 256778889999999999
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-------------------------------
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD------------------------------- 376 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------------------------------- 376 (493)
+++|...++++.+.... +...+..+...+...++.++|+..++.+...
T Consensus 511 ~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 99999999998875322 3333333333334444555544444332110
Q ss_pred --------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 011137 377 --------ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 377 --------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
..+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..++..+...|+.++ |.+.++...+
T Consensus 590 ~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~e---A~~~l~~ll~ 665 (1157)
T PRK11447 590 AEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAA---ARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHhc
Confidence 124455677788899999999999999999998862 3367889999999999999999 9999998876
Q ss_pred CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 449 RGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 449 ~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
. .|+ ..++..+..++...|++++|.++++.+.+.
T Consensus 666 ~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 666 T--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred c--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 4 444 556677778888999999999999987764
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-17 Score=169.16 Aligned_cols=405 Identities=10% Similarity=0.017 Sum_probs=308.0
Q ss_pred CCCCHHHHHHHHHH--HhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011137 65 LHWTPQLVDQIIKR--LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142 (493)
Q Consensus 65 ~~~~~~~~~~~l~~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (493)
..+++..+..-+.. ..++...|++.+..+.... +.+...+..+...+.+.|++++|..++++..+..+ .+...+.
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~--~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~ 87 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM--QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQR 87 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 45667777655444 3466788999998887522 44667799999999999999999999999888743 5677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
.++..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++....|.+...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 89999999999999999999998763 45666 88888999999999999999999998888888888889999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCH------HHHHHHHHHHH-----hcCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HH
Q 011137 223 TNKALEVLKEMVDRGLNPNL------TTYNIVLKGYF-----RAGQI---EEAWRFFLEMKKR-KCEIDVV-TY----TT 282 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~------~~~~~l~~~~~-----~~g~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~ 282 (493)
.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ..
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d 242 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID 242 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence 9999999887654 2221 11222233222 12234 7788888888864 1222221 11 11
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP---NSTTYNVVIRGLC 358 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~ 358 (493)
.+..+...|++++|+..|+++.+.+.. |+. ....+...|...|++++|+.+|+++.+..... .......+..++.
T Consensus 243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 133456779999999999999887532 332 22335778999999999999999987653221 1245666777889
Q ss_pred hcCCHHHHHHHHHHhhhCCC-----------CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHH
Q 011137 359 HTGEMERALEFVGRMKDDEC-----------EPN---VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILI 424 (493)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li 424 (493)
..|++++|..+++.+..... .|+ ...+..+...+...|+.++|+++++++... .+.+...+..+.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA 400 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYA 400 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHH
Confidence 99999999999999987521 123 235567888899999999999999999886 344678899999
Q ss_pred HHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 425 SSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 425 ~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
..+...|++++ |++.+++.++. .|+ ...+......+...|++++|.++++.+.+.
T Consensus 401 ~l~~~~g~~~~---A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 401 SVLQARGWPRA---AENELKKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHhcCCHHH---HHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999 99999999985 576 566666777889999999999999988764
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-17 Score=166.51 Aligned_cols=357 Identities=16% Similarity=0.072 Sum_probs=277.3
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.++..|+..|+.+... .|++..|..+..++.+.|++++|+..++...+..+ .+..++..+..+|...|++++|+.-
T Consensus 141 ~~~~~Ai~~y~~al~~---~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 141 KDFNKAIKLYSKAIEC---KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred CCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5678999999988654 34678899999999999999999999999988753 4678899999999999999999876
Q ss_pred HHHHHhCCC-----------------------------CCCHHHHHHH------------------------------HH
Q 011137 161 FLSMHEHGC-----------------------------RQSLNSFNTI------------------------------LD 181 (493)
Q Consensus 161 ~~~~~~~~~-----------------------------~~~~~~~~~l------------------------------l~ 181 (493)
|..+...+. +.+...+..+ +.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (615)
T TIGR00990 217 LTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQ 296 (615)
T ss_pred HHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHH
Confidence 654432110 0000000000 00
Q ss_pred HH------HccCCHHHHHHHHHHhhcC---CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011137 182 LL------CKEKKVEKAYNLFKVFRGK---FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252 (493)
Q Consensus 182 ~~------~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 252 (493)
.. ...+++++|.+.|+..... .+.....|+.+...+...|++++|+..+++..+.... +...|..+...+
T Consensus 297 l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~la~~~ 375 (615)
T TIGR00990 297 LGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIKRASMN 375 (615)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHH
Confidence 00 1125788899998887643 2335567889999999999999999999999876433 466888999999
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332 (493)
Q Consensus 253 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 332 (493)
...|++++|...++++.+... .+..+|..+...+...|++++|+..|++..+... .+...+..+..++.+.|++++|+
T Consensus 376 ~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~ 453 (615)
T TIGR00990 376 LELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGVTQYKEGSIASSM 453 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHHHHHHCCCHHHHH
Confidence 999999999999999988743 3688999999999999999999999999998643 35777888899999999999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV------QTYNILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 406 (493)
..+++..+.. +.+...++.+...+...|++++|+..|++........+. ..++.....+...|++++|.++++
T Consensus 454 ~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~ 532 (615)
T TIGR00990 454 ATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCE 532 (615)
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999998763 235778889999999999999999999999876321111 112222333445799999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 407 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
+..+.. +.+...+..+...+...|++++ |++.|++..+.
T Consensus 533 kAl~l~-p~~~~a~~~la~~~~~~g~~~e---Ai~~~e~A~~l 571 (615)
T TIGR00990 533 KALIID-PECDIAVATMAQLLLQQGDVDE---ALKLFERAAEL 571 (615)
T ss_pred HHHhcC-CCcHHHHHHHHHHHHHccCHHH---HHHHHHHHHHH
Confidence 988753 2345678889999999999999 99999998865
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-17 Score=164.42 Aligned_cols=374 Identities=12% Similarity=0.028 Sum_probs=286.9
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 011137 99 YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT 178 (493)
Q Consensus 99 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 178 (493)
.+.++....-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.+++++..+.. +.+...+..
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~ 88 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG 88 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 35677777888888999999999999999998632 3566789999999999999999999999998763 456777888
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
+..++...|++++|...++++....|.+.. +..+...+...|+.++|+..++++.+..+. +...+..+..++...|..
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 889999999999999999999888777888 999999999999999999999999987555 556667788888889999
Q ss_pred HHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh-----ccCCH---HHHHHHHHHHHHC-CCCCCHH-HH----HHH
Q 011137 259 EEAWRFFLEMKKRKCEIDV------VTYTTIVHGFG-----VVGEI---KRARNVFDGMVNG-GVLPSVA-TY----NAM 318 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-----~~g~~---~~A~~~~~~~~~~-~~~~~~~-~~----~~l 318 (493)
++|++.++.+... |+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...
T Consensus 167 e~Al~~l~~~~~~---p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANLT---PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCCC---HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 9999998866541 111 11222333322 22334 7889999998864 1222221 11 111
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHHHHHHHHHh
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP---NVQTYNILIRYFCD 394 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 394 (493)
+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+..|+++....... .......+..++..
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~ 322 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLE 322 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHh
Confidence 34456779999999999999987532 332 22335778999999999999999987653111 13556777788899
Q ss_pred cCCHHHHHHHHHHHhcCCC-----------CCC---HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 395 AGEIERGLELFEKMGSGVC-----------LPN---LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNR 460 (493)
Q Consensus 395 ~g~~~~a~~~~~~~~~~~~-----------~p~---~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 460 (493)
.|++++|.++++++.+... .|+ ...+..+...+...|+.++ |++.++++.... .-+...+..
T Consensus 323 ~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e---A~~~l~~al~~~-P~n~~l~~~ 398 (765)
T PRK10049 323 SENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ---AEMRARELAYNA-PGNQGLRID 398 (765)
T ss_pred cccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-CCCHHHHHH
Confidence 9999999999999987521 123 2345667778889999999 999999998762 444778888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 461 VLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
+...+...|++++|++.++...+.
T Consensus 399 lA~l~~~~g~~~~A~~~l~~al~l 422 (765)
T PRK10049 399 YASVLQARGWPRAAENELKKAEVL 422 (765)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHhh
Confidence 888999999999999999988775
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-15 Score=148.55 Aligned_cols=398 Identities=11% Similarity=0.063 Sum_probs=254.0
Q ss_pred HHHHHHHhhChHHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc
Q 011137 73 DQIIKRLWNHALKALHFFNILSYHPTYAHSP-SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA 151 (493)
Q Consensus 73 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 151 (493)
..|+..-..+...|++.|+.+.+.. |.++ ..+ .++.++...|+.++|...+++.... -.........+...|...
T Consensus 40 ~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 40 SLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHc
Confidence 3444444455566666666665432 1221 222 6666666667777777766666621 112233333345566666
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 011137 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 231 (493)
|++++|+++|+++.+.. +.+...+..++..+...++.++|++.++++....+ +...+..++..+...++..+|++.++
T Consensus 116 gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp-~~~~~l~layL~~~~~~~~~AL~~~e 193 (822)
T PRK14574 116 KRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDP-TVQNYMTLSYLNRATDRNYDALQASS 193 (822)
T ss_pred CCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc-chHHHHHHHHHHHhcchHHHHHHHHH
Confidence 77777777777766653 33455555666666666777777766666655433 23333333333333455545666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHH------------------------------------------------HHHH
Q 011137 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIE------------------------------------------------EAWR 263 (493)
Q Consensus 232 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~------------------------------------------------~a~~ 263 (493)
++.+.... +...+..+..++.+.|-.. .|+.
T Consensus 194 kll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 194 EAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 66665432 3444444444444333322 2333
Q ss_pred HHHHHHHC-CCCCC-HHH----HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 264 FFLEMKKR-KCEID-VVT----YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 264 ~~~~~~~~-~~~~~-~~~----~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
-++.+... +..|. ... ..-.+-++...|++.++++.|+.+...+.+....+-..+.++|...++.++|..+++.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 33333331 11122 111 1223456778899999999999999887766667888899999999999999999999
Q ss_pred HHhCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------------CCCH-HHHHHHHHHHHhcCCH
Q 011137 338 MVGKG-----YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-------------EPNV-QTYNILIRYFCDAGEI 398 (493)
Q Consensus 338 ~~~~~-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------------~~~~-~~~~~l~~~~~~~g~~ 398 (493)
+.... ..++......|..++...+++++|..+++.+.+... .||- ..+..++..+...|++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl 432 (822)
T PRK14574 353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL 432 (822)
T ss_pred HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence 87653 122333457788899999999999999999987311 1221 2345567778889999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 011137 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEI 477 (493)
Q Consensus 399 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 477 (493)
.+|++.++++... -+-|......+...+...|.+.+ |.+.++..... .|+ ..+......++...|++++|.++
T Consensus 433 ~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~---A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~ 506 (822)
T PRK14574 433 PTAQKKLEDLSST-APANQNLRIALASIYLARDLPRK---AEQELKAVESL--APRSLILERAQAETAMALQEWHQMELL 506 (822)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHH
Confidence 9999999999775 34588899999999999999999 88999776654 565 55666677788899999999888
Q ss_pred HHHHHh
Q 011137 478 LRLQSR 483 (493)
Q Consensus 478 ~~~~~~ 483 (493)
.+.+..
T Consensus 507 ~~~l~~ 512 (822)
T PRK14574 507 TDDVIS 512 (822)
T ss_pred HHHHHh
Confidence 866544
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-15 Score=147.72 Aligned_cols=376 Identities=11% Similarity=0.064 Sum_probs=279.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+..+.+--.-+-...+.|+++.|...|++..+..+.-....+ .++..+...|+.++|+..+++.... .+........+
T Consensus 31 p~~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llal 108 (822)
T PRK14574 31 PAMADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASA 108 (822)
T ss_pred ccchhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHH
Confidence 334445455555678999999999999999887642212344 8888888999999999999998832 12233334444
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
...+...|++++|+++|+++.+..|.+...+..++..+...++.++|++.++++... .|+...+..++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHH
Confidence 668888999999999999999988888888989999999999999999999999876 455556655555555567776
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH----------------------------------------
Q 011137 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV---------------------------------------- 299 (493)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~---------------------------------------- 299 (493)
+|++.++++.+.... +...+..++.++.+.|-...|.++
T Consensus 187 ~AL~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 799999999998543 666666666666655544443333
Q ss_pred --------HHHHHHC-CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011137 300 --------FDGMVNG-GVLPS-VATY----NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365 (493)
Q Consensus 300 --------~~~~~~~-~~~~~-~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 365 (493)
++.+... +..|. ...| .=.+-++...|++.++++.|+.+...+.+....+-..+..+|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 2332221 11121 1111 12344667889999999999999988876566788899999999999999
Q ss_pred HHHHHHHhhhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC-----------C--CCH-HHHHHHHHH
Q 011137 366 ALEFVGRMKDDE-----CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC-----------L--PNL-DTYNILISS 426 (493)
Q Consensus 366 a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~--p~~-~~~~~li~~ 426 (493)
|+.+++.+.... ..++......|..+|...+++++|..+++.+.+... . ||- ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999997652 233444467899999999999999999999987311 1 222 234455677
Q ss_pred HhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
+...|+..+ |.+.++++.... .-|......+...+...|.+.+|++.++.....
T Consensus 426 ~~~~gdl~~---Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 426 LVALNDLPT---AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHcCCHHH---HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 888999999 999999998763 556888888888999999999999999766554
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-14 Score=143.14 Aligned_cols=214 Identities=9% Similarity=-0.024 Sum_probs=121.2
Q ss_pred HHHHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 011137 69 PQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY 148 (493)
Q Consensus 69 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 148 (493)
+......+.....+++.|+..|+.+.+.. |.++.++..+...|.+.|++++|...+++..+..+ -|...+..+ ..+
T Consensus 46 ~~f~~a~~~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~L-a~i 121 (987)
T PRK09782 46 PRLDKALKAQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSL-AAI 121 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHH-HHh
Confidence 33344445555577888999998887654 45688889999999999999999999999887653 333334333 222
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--------HHccCCHHHHHHHHHHhhcCCCCC--cch-HHHHHHHH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL--------LCKEKKVEKAYNLFKVFRGKFKAD--VIS-YNVIANGW 217 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~A~~~~~~~~~~~~~~--~~~-~~~l~~~~ 217 (493)
+++++|..+++++.+.. +-+..++..+... |.+. ++|.+.++ .....|+ ... ...+...|
T Consensus 122 ---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY 192 (987)
T PRK09782 122 ---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN--DATFAASPEGKTLRTDLLQRA 192 (987)
T ss_pred ---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH--HhhhCCCCCcHHHHHHHHHHH
Confidence 88888888888888754 3344455444444 4444 34444333 2222222 333 33336777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR-AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 296 (493)
.+.|++++|++.+.++.+.+.. +......+..+|.. .++ +++..+++. ....+...+..++..|.+.|+.++|
T Consensus 193 ~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A 266 (987)
T PRK09782 193 IYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARL 266 (987)
T ss_pred HHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHH
Confidence 7777777777777777766543 23333334444443 233 444433221 1112344444444444444444444
Q ss_pred HHHHH
Q 011137 297 RNVFD 301 (493)
Q Consensus 297 ~~~~~ 301 (493)
.++++
T Consensus 267 ~~~L~ 271 (987)
T PRK09782 267 QHYLI 271 (987)
T ss_pred HHHHH
Confidence 43333
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.3e-14 Score=122.93 Aligned_cols=380 Identities=18% Similarity=0.200 Sum_probs=271.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH--HcCCHHHH-HHHHHHHHhCC----------
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV--SAGKADRA-VKIFLSMHEHG---------- 168 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a-~~~~~~~~~~~---------- 168 (493)
.+.+=|.++.. ...|....+.-+|+.|.+.|++.+...-..+++..+ ...+.--| .+.|-.|.+.|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34455666654 567889999999999999999888877666655422 22211111 11122222111
Q ss_pred ---------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 169 ---------CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG-KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 169 ---------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
.+.+..++..+|.++|+-...+.|.+++++-.. ..+.+..+||.+|.+-.-. ...+++.+|....+
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm 269 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKM 269 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhc
Confidence 245668899999999999999999999988754 4667888999998775433 33789999999999
Q ss_pred CCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHHHHC----CCC
Q 011137 239 NPNLTTYNIVLKGYFRAGQIEE----AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR-ARNVFDGMVNG----GVL 309 (493)
Q Consensus 239 ~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~~~~----~~~ 309 (493)
.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ |..++.++.+. ..+
T Consensus 270 ~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fk 349 (625)
T KOG4422|consen 270 TPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFK 349 (625)
T ss_pred CCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCccc
Confidence 9999999999999999998765 56788899999999999999999999999988744 55555555442 222
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 011137 310 ----PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG----YMPN---STTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378 (493)
Q Consensus 310 ----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 378 (493)
-|...|...+..|.+..+.+-|.++..-+.... +.|+ ..-|..+....|+....+.-..+|+.|+-.-+
T Consensus 350 p~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y 429 (625)
T KOG4422|consen 350 PITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAY 429 (625)
T ss_pred CCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 245567778888889999999988876554331 2222 23456677778888889999999999998877
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC-CcccH----------HHHHHHHH---
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK-KSDDL----------LVAGKLLI--- 444 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~-~~~~~----------~~A~~~~~--- 444 (493)
-|+..+...++++..-.|.++-..++|..+...|..-+...-..++..++..+ ..... .-|..+++
T Consensus 430 ~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e 509 (625)
T KOG4422|consen 430 FPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYE 509 (625)
T ss_pred cCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999988775555555555555555444 22110 00112221
Q ss_pred ----HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC
Q 011137 445 ----EMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG-RLP 488 (493)
Q Consensus 445 ----~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~ 488 (493)
+|... .......+..+-.+.+.|+.++|.+++..+.+.+ ..|
T Consensus 510 ~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 510 SQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred hhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 23332 3334455666667889999999999999885543 444
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.5e-14 Score=137.62 Aligned_cols=398 Identities=14% Similarity=0.181 Sum_probs=246.0
Q ss_pred HHHHHHhhCh---HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHH
Q 011137 74 QIIKRLWNHA---LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERY 148 (493)
Q Consensus 74 ~~l~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 148 (493)
.++....++. ..++..+...-... +.+|...+.+...+.-.|++..++.+.+.+...... .-...|..+.++|
T Consensus 240 ~~~~l~~~d~~s~~~~~~ll~~ay~~n--~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 240 GEVDLNFNDSDSYKKGVQLLQRAYKEN--NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHHccchHHHHHHHHHHHHHHhhc--CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3444444443 45666665553332 468899999999999999999999999998775421 1245688899999
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC----C
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSL--NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK----R 222 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~ 222 (493)
-..|++++|...|.+..+.. ++. ..+.-+.+.+.+.|+++.+...|+.+....|.+..+...|...|...+ .
T Consensus 318 Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 318 HAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred HhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHH
Confidence 99999999999998887653 333 344567788999999999999999888777777777777777777664 3
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHH--------------------------------------HHHHHHHHhcCCHHHHHHH
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTY--------------------------------------NIVLKGYFRAGQIEEAWRF 264 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~--------------------------------------~~l~~~~~~~g~~~~a~~~ 264 (493)
.+.|..++.+..+.-+. |...| |.+...+...|++++|...
T Consensus 396 ~d~a~~~l~K~~~~~~~-d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~ 474 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQTPV-DSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH 474 (1018)
T ss_pred HHHHHHHHHHHHhcccc-cHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence 45555555554443221 34444 4444444444555555555
Q ss_pred HHHHHHC---CCCCCH------HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHH
Q 011137 265 FLEMKKR---KCEIDV------VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQVLCKKDSVENAILV 334 (493)
Q Consensus 265 ~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~ 334 (493)
|+..... ...++. .+-..+...+-..++.+.|.+.|..+.+.. |+ +..|..+.......+...+|...
T Consensus 475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHH
Confidence 5544433 111111 111223334444445555555555554431 11 11222221111122334444444
Q ss_pred HHHHHhCC-----------------------------------CCCChhhHHHHHHHHHh------------cCCHHHHH
Q 011137 335 FEEMVGKG-----------------------------------YMPNSTTYNVVIRGLCH------------TGEMERAL 367 (493)
Q Consensus 335 ~~~~~~~~-----------------------------------~~~~~~~~~~li~~~~~------------~~~~~~a~ 367 (493)
+.+....+ ..+|+...-.|...|.+ .+..++|+
T Consensus 553 lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAl 632 (1018)
T KOG2002|consen 553 LKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKAL 632 (1018)
T ss_pred HHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHH
Confidence 44433221 11233333333343321 23456777
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
++|..+++.. +.|...-|.+.-.++..|++.+|..+|.+..+... -+..+|-.+.++|+..|++.. |++.|+...
T Consensus 633 q~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~---AIqmYe~~l 707 (1018)
T KOG2002|consen 633 QLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRL---AIQMYENCL 707 (1018)
T ss_pred HHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHH---HHHHHHHHH
Confidence 7777777764 55677777788888888888888888888887532 245678888888888888888 888888776
Q ss_pred HC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 448 DR-GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 448 ~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
++ +-.-+..+...|.+++.+.|++.+|.+.+.....
T Consensus 708 kkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 708 KKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 55 3334577777888888888888888887765544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-13 Score=137.21 Aligned_cols=353 Identities=12% Similarity=0.056 Sum_probs=253.8
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHccCC---HH
Q 011137 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH--GCRQSLNSFNTILDLLCKEKK---VE 190 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~---~~ 190 (493)
.+...++...++.|.+... -+......+.-...+.|+.++|.++|+..... +...+....+-++..|.+.+. ..
T Consensus 355 ~~~~~~~~~~~~~~y~~~~-~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 355 TRNKAEALRLARLLYQQEP-ANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred cCchhHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 4666777777777766532 36666666667778889999999999888752 112344455577777777765 22
Q ss_pred HHHHH-------------------------HHHhhcCCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 011137 191 KAYNL-------------------------FKVFRGKFKA--DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243 (493)
Q Consensus 191 ~A~~~-------------------------~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 243 (493)
++..+ +.......++ +...|..+..++.. ++.++|...+.+..... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 33222 1111222344 66778888888876 78888999888877653 5554
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 323 (493)
....+...+...|++++|...++++... +++...+..+...+.+.|+.++|...+++..+.+. .+...+..+.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~ 587 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRY 587 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHH
Confidence 4444555667899999999999987654 33445566777888899999999999999887642 23333333444455
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
..|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++..... +.+...++.+...+...|++++|++
T Consensus 588 ~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 588 IPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred hCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 669999999999999876 4567788888899999999999999999998875 5567788888899999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK-FTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
.+++..+.. +-+...+..+..++...|++++ |...+++.++. .|+. .+............+++.|.+-++...
T Consensus 665 ~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~e---A~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~ 738 (987)
T PRK09782 665 MLERAHKGL-PDDPALIRQLAYVNQRLDDMAA---TQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRW 738 (987)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH---HHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence 999988852 3367888899999999999999 99999999874 5664 444445555666666777766665544
Q ss_pred hc
Q 011137 483 RC 484 (493)
Q Consensus 483 ~~ 484 (493)
..
T Consensus 739 ~~ 740 (987)
T PRK09782 739 TF 740 (987)
T ss_pred hc
Confidence 43
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.9e-13 Score=119.92 Aligned_cols=342 Identities=14% Similarity=0.135 Sum_probs=237.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
|.+..+|..+|.++++--+.++|.+++++......+.+..+|+.+|.+-.-. ...++..+|......||..++|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 4577889999999999999999999999988877778899999888764433 237788888888888999999999
Q ss_pred HHHHHccCCHHHHHHH----HHHhhc-CCCCCcchHHHHHHHHHhcCChhH-HHHHHHHHHh----CCCC---C-CHHHH
Q 011137 180 LDLLCKEKKVEKAYNL----FKVFRG-KFKADVISYNVIANGWCLVKRTNK-ALEVLKEMVD----RGLN---P-NLTTY 245 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~----~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~m~~----~g~~---p-~~~~~ 245 (493)
+++..+.|+++.|... +.+|++ ++.|...+|..+|..+++.++..+ |..++.++.. +.++ | |..-|
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 9999999988776544 445554 578888999999998888777744 4445555432 1222 2 34556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 246 NIVLKGYFRAGQIEEAWRFFLEMKKRK----CEID---VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318 (493)
Q Consensus 246 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 318 (493)
...+..|.+..+.+-|.++..-+.... +.++ ..-|..+....|+....+.-...|+.|+-.-+-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 778888888888888888876654431 2222 334566777778888888889999998887777888888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-C---HH----------HHHHHH-------HHhhhCC
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG-E---ME----------RALEFV-------GRMKDDE 377 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~---~~----------~a~~~~-------~~~~~~~ 377 (493)
+++..-.|.++-.-+++.++...|.........-++..+++.. . .+ -|..++ .++.+.
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~- 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ- 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc-
Confidence 8888888888888888888888775544444444444444433 1 10 011111 122222
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC----CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC
Q 011137 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL----PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g 450 (493)
.......+..+-.+.+.|+.++|.+++.-+.+.+-. |.......+++.....+.... |...++-|...+
T Consensus 519 -~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq---A~~~lQ~a~~~n 591 (625)
T KOG4422|consen 519 -DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ---AIEVLQLASAFN 591 (625)
T ss_pred -cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH---HHHHHHHHHHcC
Confidence 334556677777788889999999888888554322 333333345555556666666 777777776654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-13 Score=128.71 Aligned_cols=283 Identities=11% Similarity=0.046 Sum_probs=181.1
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHccCCHHHH
Q 011137 116 LRDYRTVWTLVHRMKSLSLGPTQKT-FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN--TILDLLCKEKKVEKA 192 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~g~~~~A 192 (493)
.|+++.|.+.+....... +++.. +........+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 478888887776654432 12333 333344447778888888888887764 34433222 335567778888888
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHH
Q 011137 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL-------TTYNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~ 265 (493)
...++.+.+..|.+......+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 173 l~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 173 RHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 88888877777777777888888888888888888888888776654222 12233333333444455555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 345 (493)
+.+.+. .+.++.....+...+...|+.++|.+++++..+. .++... .++.+....++.+++.+..+...+... -
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P-~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHG-D 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCC-C
Confidence 555433 2346667777777777777777777777777663 233321 123333455777777777777766532 2
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
|...+..+...|.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555667777777777777777777777764 56777777777777777777777777776543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-13 Score=128.46 Aligned_cols=298 Identities=10% Similarity=0.016 Sum_probs=183.7
Q ss_pred HHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 106 FDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPT-QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 106 ~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
+..+.+++ ...|+++.|.+.+....+.. |+ ...+-....++.+.|+++.|.+.+.+..+....+.....-.....
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 34444443 34688888888887766653 33 334445566777788888888888887654311222233334667
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---HhcCCH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN-IVLKGY---FRAGQI 258 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~---~~~g~~ 258 (493)
+...|+++.|...++.+.+..|.+...+..+...+...|++++|.+.+..+.+.++. +...+. ....++ ...+..
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~ 241 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMA 241 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888887777777778888888888888888888888888877654 222221 111111 222222
Q ss_pred HHHHHHHHHHHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhcCCHHHHH
Q 011137 259 EEAWRFFLEMKKRKC---EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT---YNAMIQVLCKKDSVENAI 332 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~ 332 (493)
+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+... |... ...........++.+.+.
T Consensus 242 ~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~~l~~~~~l~~~~~~~~~ 319 (409)
T TIGR00540 242 DEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLPLCLPIPRLKPEDNEKLE 319 (409)
T ss_pred hcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhHHHHHhhhcCCCChHHHH
Confidence 323334444433321 13667777777788888888888888887777532 2221 111112223346667777
Q ss_pred HHHHHHHhCCCCCCh--hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 333 LVFEEMVGKGYMPNS--TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
+.++...+... -|+ ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 320 ~~~e~~lk~~p-~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 320 KLIEKQAKNVD-DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHHHhCC-CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77766665521 133 44556677777777777777777753333336677777777777777777777777777653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.7e-13 Score=127.12 Aligned_cols=366 Identities=13% Similarity=0.111 Sum_probs=264.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
..+...|+.++|.+++.+..+..+ .....|..|...|-..|+.+++...+-.+.... +.|...|..+.....+.|.++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHH
Confidence 334445899999999999888754 577788889999999999988888765555443 556688888888888889999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHH
Q 011137 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY----NIVLKGYFRAGQIEEAWRFFL 266 (493)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~ 266 (493)
+|.-.|.+..+..|++...+---+..|-+.|+...|...|.++.+.....|..-+ ..++..+...++-+.|.+.++
T Consensus 225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999888888877778777777788888899999999999988876443233222 334555666777788888888
Q ss_pred HHHHC-CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH--------------------------HHHH
Q 011137 267 EMKKR-KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY--------------------------NAMI 319 (493)
Q Consensus 267 ~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------------------------~~li 319 (493)
..... +-..+...++.++..|.+...++.|......+......+|..-| -.++
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 77663 23345667788888888888888888888777662222222111 1223
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 320 QVLCKKDSVENAILVFEEMVGKG--YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (493)
-++...+..+....+.....+.+ +.-+...|.-+..+|...|++.+|+.++..+......-+...|-.+..+|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33444555555555555555555 3345667888889999999999999999999887555567788999999999999
Q ss_pred HHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCCcccHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHc
Q 011137 398 IERGLELFEKMGSGVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMV--------DRGFMPRKFTFNRVLNGLLLI 468 (493)
Q Consensus 398 ~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~ 468 (493)
.++|.+.|++.... .| +...--.|...+.+.|+.++ |.+.+..+. ..+..|+..........+...
T Consensus 465 ~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~Ek---alEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 465 YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEK---ALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHH---HHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 99999999998875 34 45556667777888899888 888888744 334566666666677788889
Q ss_pred CCHHHHHHHHHHHHh
Q 011137 469 GNQGLAKEILRLQSR 483 (493)
Q Consensus 469 g~~~~a~~~~~~~~~ 483 (493)
|+.++-......|..
T Consensus 540 gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 540 GKREEFINTASTLVD 554 (895)
T ss_pred hhHHHHHHHHHHHHH
Confidence 988875555544443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.4e-13 Score=130.27 Aligned_cols=260 Identities=10% Similarity=-0.019 Sum_probs=115.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
.......|+.+.|.+.+.+..+....+...........+...|+++.|...++.+.+..+. +..++..+...+...|++
T Consensus 125 A~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 125 AEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhH
Confidence 3344444444444444444433221111112222244444444444444444444444322 334444444444444455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHH-HHHHH---HHhcCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHH
Q 011137 294 KRARNVFDGMVNGGVLPSVATYN-AMIQV---LCKKDSVENAILVFEEMVGKGY---MPNSTTYNVVIRGLCHTGEMERA 366 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~-~li~~---~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 366 (493)
+.|.+.+..+.+.+.. +...+. .-..+ ....+..+++.+.+..+.+... ..+...+..+...+...|+.++|
T Consensus 204 ~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A 282 (409)
T TIGR00540 204 QALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSA 282 (409)
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence 4444444444444322 111111 11111 1112222222223333333211 11445555555566666666666
Q ss_pred HHHHHHhhhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH--HHHHHHHHHHhccCCcccHHHHHH
Q 011137 367 LEFVGRMKDDECEPNVQT---YNILIRYFCDAGEIERGLELFEKMGSGVCLPNL--DTYNILISSMFVRKKSDDLLVAGK 441 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~~~~A~~ 441 (493)
.+.+++..+.. |+... ...........++.+++.+.+++..+. .+-|. ....++...+.+.|++++ |.+
T Consensus 283 ~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~-~p~~~~~~ll~sLg~l~~~~~~~~~---A~~ 356 (409)
T TIGR00540 283 QEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN-VDDKPKCCINRALGQLLMKHGEFIE---AAD 356 (409)
T ss_pred HHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHHHcccHHH---HHH
Confidence 66666665542 22211 011111122345556666666555543 11123 444556666666666666 666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 442 LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 442 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
.|+........|+...+..+...+.+.|+.++|.++++..
T Consensus 357 ~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 357 AFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6663222223566666666666666666666666666543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.3e-13 Score=127.00 Aligned_cols=258 Identities=8% Similarity=0.017 Sum_probs=114.6
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCcchH-HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 184 CKEKKVEKAYNLFKVFRGKFKADVISY-NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
.+.|+++.|...++++.+..+.+.... ......+...|+++.|.+.++++.+..+. +...+..+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555555543222111111 12234455555555555555555544332 3444455555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 342 (493)
+++..+.+.+...+. ....+- ..+|..++.......+.+...++++.+.+.
T Consensus 208 ~~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~- 258 (398)
T PRK10747 208 DILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK- 258 (398)
T ss_pred HHHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-
Confidence 555555554332111 111000 001111222222222333333333333221
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHH
Q 011137 343 YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422 (493)
Q Consensus 343 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 422 (493)
.+.++.....+...+...|+.++|.+.+++..+. +++.... ++.+....++.+++.+..++..+. .+-|...+..
T Consensus 259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~ 333 (398)
T PRK10747 259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWST 333 (398)
T ss_pred HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHH
Confidence 1224444555555555555555555555555542 3333211 122222335555555555555543 1223444555
Q ss_pred HHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 423 LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 423 li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+...|...+++++ |.+.|+.+.+. .|+..++..+...+.+.|+.++|.++++..
T Consensus 334 lgrl~~~~~~~~~---A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 334 LGQLLMKHGEWQE---ASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHCCCHHH---HHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555555555 55555555542 455555555555555555555555555443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-13 Score=120.55 Aligned_cols=207 Identities=15% Similarity=0.166 Sum_probs=167.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333 (493)
Q Consensus 254 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 333 (493)
..|++++|.+.+++............|+ +.-.+...|++++|++.|-++..- +..+..+...+...|-...+..+|++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie 579 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIE 579 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHH
Confidence 4678999999999988774433333333 344567889999999999887543 22367777888889999999999999
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 011137 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 413 (493)
++.+.... ++.|+...+.|...|-+.|+-.+|.+.+-+--.- ++-+.++...|...|....-+++++.+|++..- +
T Consensus 580 ~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--i 655 (840)
T KOG2003|consen 580 LLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--I 655 (840)
T ss_pred HHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--c
Confidence 99777654 4557889999999999999999999987665543 577899999999999999999999999998876 6
Q ss_pred CCCHHHHHHHHHHHh-ccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011137 414 LPNLDTYNILISSMF-VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470 (493)
Q Consensus 414 ~p~~~~~~~li~~~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 470 (493)
.|+..-|..++..|. +.|++.. |+.++++.-++ +.-|...+..|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqk---a~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQK---AFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHH---HHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 799999999987665 5799999 99999998876 67788888889988877764
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.68 E-value=3e-16 Score=141.15 Aligned_cols=260 Identities=13% Similarity=0.152 Sum_probs=75.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 144 IAERYVSAGKADRAVKIFLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
+...+...|++++|+++++...... .+.+...|..+.......++++.|...++++....+.+...+..++.. ...++
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence 3455555566666666664332221 123344444444455555666666666665554433344445555554 45566
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
+++|.+++++..+.. ++...+..++..+.+.|+++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 666666655554432 234445555555666666666666666654432 23345555556666666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 011137 302 GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN 381 (493)
Q Consensus 302 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 381 (493)
+..+... .|......++..+...|+.+++..+++...+.. ..|+..+..+..++...|+.++|+.++++..+.. +.|
T Consensus 171 ~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 6655321 134555556666666666666555555554442 2244455556666666666666666666665542 335
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 382 VQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
......+.+++...|+.++|.++.+++.
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 5556666666666666666666655543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-12 Score=123.03 Aligned_cols=390 Identities=13% Similarity=0.125 Sum_probs=255.4
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 83 ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFL 162 (493)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 162 (493)
.+.|..-|..+..+. ++++-.+---..+....|++..|+.+|.......+.--+.....+..++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 367888888887664 455555555555666778999999999997665433233333444567788899999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHc---cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011137 163 SMHEHGCRQSLNSFNTILDLLCK---EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
...+.+ +.++.++..|...-.. ...+..+..++...-...+.++...+.|.+.|...|++..+..+...+......
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 888754 2233333333222222 234556666666666666778888999999999999999999998888765311
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 240 --PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 240 --p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
.-...|-.+.++|...|++++|...|.+..+.....-...+.-|...|.+.|+++.+...|+.+.+. .+.+..+...
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~i 381 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKI 381 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHH
Confidence 1234577888999999999999999988877644322445566788899999999999999998875 2335566666
Q ss_pred HHHHHHhcC----CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh----hCCCCCCHHHHHHHH
Q 011137 318 MIQVLCKKD----SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK----DDECEPNVQTYNILI 389 (493)
Q Consensus 318 li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~ 389 (493)
+...|...+ ..+.|..++....+.- ..|...|-.+...+... +...++.+|..+. ..+..+.++..|.+.
T Consensus 382 LG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNva 459 (1018)
T KOG2002|consen 382 LGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVA 459 (1018)
T ss_pred HHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHH
Confidence 666666654 4566777776666653 33666676666666554 4444477766554 334457778888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC---CCCCCH------HHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHH-HHH
Q 011137 390 RYFCDAGEIERGLELFEKMGSG---VCLPNL------DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF-TFN 459 (493)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~---~~~p~~------~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~ 459 (493)
..+...|++++|...|+..... ...+|. .+-..+...+-..++++. |.+.+...++. .|+-+ .|.
T Consensus 460 slhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~---A~e~Yk~Ilke--hp~YId~yl 534 (1018)
T KOG2002|consen 460 SLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEV---AEEMYKSILKE--HPGYIDAYL 534 (1018)
T ss_pred HHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhH---HHHHHHHHHHH--CchhHHHHH
Confidence 8888888888888888877654 112222 122334444555566676 77777777764 45533 333
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 460 RVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.++......+...+|...++...+
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~ 558 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALN 558 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHh
Confidence 333222334566666666655444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.2e-13 Score=113.13 Aligned_cols=307 Identities=12% Similarity=0.121 Sum_probs=204.5
Q ss_pred CCCCCCCHHHHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---H
Q 011137 62 CPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT---Q 138 (493)
Q Consensus 62 ~~~~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 138 (493)
.....+|...+..+-..+.+.+++|.+.|-.+.... +.+.++.-++.+.|.+.|..++|+++.+.+..+.--+. .
T Consensus 30 ~qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~ 107 (389)
T COG2956 30 DQANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRL 107 (389)
T ss_pred HHHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHH
Confidence 344556777777777778888888888887776532 34566677778888888899999988888876632121 1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC--Cc---chHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DV---ISYNVI 213 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~---~~~~~l 213 (493)
.+...+.+-|...|-+|.|.++|..+.+.+ .--......|+..|-...++++|+++-+++.+..+. +. ..|.-+
T Consensus 108 lAl~qL~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCEL 186 (389)
T COG2956 108 LALQQLGRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCEL 186 (389)
T ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHH
Confidence 244556777888888888888888887644 234556777888888888888888887766543111 11 235555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
...+....+++.|..++.+..+.+.+ .+..-..+.+.....|+++.|.+.++.+.+.+...-..+...|..+|...|+.
T Consensus 187 Aq~~~~~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~ 265 (389)
T COG2956 187 AQQALASSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP 265 (389)
T ss_pred HHHHhhhhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence 56666677788888888887766433 33444456677778888888888888888876666667777778888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh---cCCHHHHHHHH
Q 011137 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH---TGEMERALEFV 370 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~~~~~~a~~~~ 370 (493)
++....+..+.+... +...-..+.+.-....-.+.|..++.+-... +|+...+..+|..-.. .|...+.+.++
T Consensus 266 ~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~l 341 (389)
T COG2956 266 AEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLL 341 (389)
T ss_pred HHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHH
Confidence 888888877776532 3333344444444444455555555544444 5777777777776543 23455555666
Q ss_pred HHhhhC
Q 011137 371 GRMKDD 376 (493)
Q Consensus 371 ~~~~~~ 376 (493)
+.|+..
T Consensus 342 r~mvge 347 (389)
T COG2956 342 RDMVGE 347 (389)
T ss_pred HHHHHH
Confidence 666543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5e-12 Score=110.57 Aligned_cols=295 Identities=13% Similarity=0.069 Sum_probs=209.1
Q ss_pred HHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 107 DHAIDLAAR--LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 107 ~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
..+.+++.+ .|+|.+|.++..+-.+.+. .....|..-+++.-+.|+.+.+-..+.++.+..-.++..+.-.......
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll 164 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLL 164 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 334444444 5888888888888666653 2344566667777788888888888888887643566666777777888
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCC
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL-------TTYNIVLKGYFRAGQ 257 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~ 257 (493)
..|+++.|..-++.+.+..+.+.........+|.+.|++.....++.++.+.|.--|. .+|..++.-....+.
T Consensus 165 ~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~ 244 (400)
T COG3071 165 NRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNG 244 (400)
T ss_pred hCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888888887777778888888888888899999888888888888765443 456666666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
.+.-...++..... ...++..-..++.-+..+|+.++|.++.++..+.+..|+. ...-.+.+-++.+.-.+..+.
T Consensus 245 ~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~ 319 (400)
T COG3071 245 SEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEK 319 (400)
T ss_pred chHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHH
Confidence 66666666665444 3335666667777788888888888888887776655441 122234556666666666655
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
-.+.. +-++..+.+|...|.+.+.|.+|...|+...+. .|+..+|+.+.+++.+.|+.++|.++.++...
T Consensus 320 ~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 320 WLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 55442 224467777778888888888888888876664 67778888888888888888888887776653
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-16 Score=137.98 Aligned_cols=262 Identities=12% Similarity=0.133 Sum_probs=113.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLS-LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 186 (493)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++++.|++.++++...+. -+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccc
Confidence 55778889999999999996654443 345667777778888889999999999999987652 356677777777 788
Q ss_pred CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 265 (493)
+++++|.++++..-+. .++...+..++..+...++++++.++++.+.... ...+...|..+...+.+.|+.++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER-DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccc-ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988765443 3567778888899999999999999999987543 3457788889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 345 (493)
++..+..+. |......++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|...+++..+.+ +.
T Consensus 170 ~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~ 246 (280)
T PF13429_consen 170 RKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD 246 (280)
T ss_dssp HHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence 999997443 68888999999999999999988888887653 3466678889999999999999999999988863 33
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
|......+..++...|+.++|.++.+++..
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccc
Confidence 788888999999999999999999887654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-12 Score=122.67 Aligned_cols=332 Identities=15% Similarity=0.147 Sum_probs=259.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
.........|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-....-.|.|...|..+.....+.|.
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~ 222 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGN 222 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhccc
Confidence 33444555699999999999999875 56778899999999999999999988766666667788999999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccCCHHHHHH
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY----TTIVHGFGVVGEIKRARN 298 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~g~~~~A~~ 298 (493)
++.|.-+|.+.++.... +...+-.-+..|-+.|+...|..-|.++.....+.|..-+ -.+++.+...++-+.|.+
T Consensus 223 i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 223 INQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999987544 5666666788899999999999999999988554343333 334566777888899999
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---------------------------CCCChhhH
Q 011137 299 VFDGMVNG-GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG---------------------------YMPNSTTY 350 (493)
Q Consensus 299 ~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~ 350 (493)
.++..... +-..+...++.++..|.+...++.|......+.... ..++...
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v- 380 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV- 380 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-
Confidence 99887763 233456678899999999999999999888777621 1122222
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 351 NVVIRGLCHTGEMERALEFVGRMKDDE--CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 351 ~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
..++-++.+.+..+....+........ +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|.
T Consensus 381 ~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 381 IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYM 460 (895)
T ss_pred HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHH
Confidence 123334455555566666666666665 334567899999999999999999999999998765567889999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 429 VRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
..|.+++ |.+.++..+.. .|+ ...-.+|...+.+.|+.++|.+.++.+.
T Consensus 461 ~l~e~e~---A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 461 ELGEYEE---AIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHhhHHH---HHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999 99999999975 555 4445556667889999999999998754
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-13 Score=127.63 Aligned_cols=282 Identities=13% Similarity=0.068 Sum_probs=206.2
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC---CCcchHHHHHHHHHhcCChhHHHH
Q 011137 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK---ADVISYNVIANGWCLVKRTNKALE 228 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~ 228 (493)
-+..+|+..|..+... +..+..+...+..+|...+++++|.++|+.+....+ .+..+|.+.+..+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 3567888888885543 344556777788889999999999999988876522 3556777776654332 2222
Q ss_pred HH-HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 229 VL-KEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 229 ~~-~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
.+ +++.+.. +-.+.+|..+.++|.-+++.+.|++.|++..+.+.. ...+|+.+.+-+....++|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~- 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV- 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence 22 2333332 225678999999999999999999999988886433 6778888888888888899999999887763
Q ss_pred CCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 011137 308 VLPSVAT---YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384 (493)
Q Consensus 308 ~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 384 (493)
|... |.-+...|.+.++++.|+-.|+...+-+.. +.+....+...+.+.|+.++|+++++++.... +.|+..
T Consensus 485 ---~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 485 ---DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred ---CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchh
Confidence 4444 444667788899999999999888887544 66677777788888899999999999888775 334444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g 450 (493)
--.-+..+...+++++|+..++++.+. ++-+...|..+...|.+.|+.+. |+..|--|.+..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~---Al~~f~~A~~ld 621 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDL---ALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchH---HHHhhHHHhcCC
Confidence 444566666788899999999998884 23345677778888888888888 888888877653
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.4e-11 Score=114.10 Aligned_cols=376 Identities=11% Similarity=0.051 Sum_probs=231.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 011137 97 PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT--QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN 174 (493)
Q Consensus 97 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 174 (493)
.|+..+.+.|-.=...|-+.|..-.+..+.......|+... ..+|..-...|.+.+.++-|..+|...++. ++.+..
T Consensus 473 ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~s 551 (913)
T KOG0495|consen 473 NGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKS 551 (913)
T ss_pred cceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhH
Confidence 45666777777777777777777777777777777665332 356777777777777777777777777664 244556
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 254 (493)
.|......--..|..+....+|++.....+.....|......+-..|++..|..++....+.... +...|-..+.....
T Consensus 552 lWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~e 630 (913)
T KOG0495|consen 552 LWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFE 630 (913)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhc
Confidence 66666655555667777777777766666666666666666666677777777777777665444 55666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334 (493)
Q Consensus 255 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 334 (493)
..+++.|..+|.+.... .++..+|.--+..---.++.++|.+++++.++. ++.-...|..+.+.+-+.++++.|...
T Consensus 631 n~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~a 707 (913)
T KOG0495|consen 631 NDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREA 707 (913)
T ss_pred cccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence 67777777777666553 445555655555555666677777777666654 222234555666666666666666666
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
|..-.+. ++-....|-.+...=-+.|.+-.|..++++..-.+ +-+...|-..|.+-.+.|+.+.|..+..+..+. ++
T Consensus 708 Y~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp 784 (913)
T KOG0495|consen 708 YLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CP 784 (913)
T ss_pred HHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CC
Confidence 6554443 22233344444444455566666666666666554 445666666666666666666666666555443 33
Q ss_pred C------------------------------CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 415 P------------------------------NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNG 464 (493)
Q Consensus 415 p------------------------------~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 464 (493)
. |++....+...+....+++. |.+.|.+.++.+ .-+..+|.-+..-
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~k---ar~Wf~Ravk~d-~d~GD~wa~fykf 860 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEK---AREWFERAVKKD-PDNGDAWAWFYKF 860 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHH---HHHHHHHHHccC-CccchHHHHHHHH
Confidence 3 33444444444444444444 666666666543 2225555556666
Q ss_pred HHHcCCHHHHHHHHHHHHhc
Q 011137 465 LLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 465 ~~~~g~~~~a~~~~~~~~~~ 484 (493)
+...|.-+.-.+++.+...+
T Consensus 861 el~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 861 ELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHhCCHHHHHHHHHHHhcc
Confidence 66666666666666655543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-13 Score=126.67 Aligned_cols=285 Identities=13% Similarity=0.103 Sum_probs=226.9
Q ss_pred ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011137 118 DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNL 195 (493)
Q Consensus 118 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~ 195 (493)
+.++|..+|..+... +.-+..+...+.++|...+++++|.++|+.+.+.. ...+.++|.+.+--+-+ +-++.+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence 567889999985554 44556888899999999999999999999998643 12356677776654422 122333
Q ss_pred H-HHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 011137 196 F-KVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE 274 (493)
Q Consensus 196 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 274 (493)
+ +.+....+..+.+|.++.++|.-.++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+.....
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 2 4455556778899999999999999999999999999986433 6789999999999999999999999988776322
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011137 275 IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354 (493)
Q Consensus 275 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (493)
+-..|.-+.-.|.+.++++.|+-.|++..+-+.. +......+...+-+.|+.++|+.++++......+ |+..--..+
T Consensus 488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~ 564 (638)
T KOG1126|consen 488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA 564 (638)
T ss_pred -hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence 3445555677899999999999999999986443 5667777888889999999999999999887654 555555566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV 412 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 412 (493)
..+...+++++|+..++++++. ++-+...+..+...|.+.|+.+.|+.-|--+.+..
T Consensus 565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6777889999999999999986 35567788999999999999999999999888753
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-12 Score=109.41 Aligned_cols=289 Identities=15% Similarity=0.203 Sum_probs=170.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc------chHHHHHHHHHhcCChh
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV------ISYNVIANGWCLVKRTN 224 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~ 224 (493)
..+.++|+++|-+|.+.+ +.+..+.-+|.+.|-+.|.++.|+++-+.+..+ ||. .+...|..-|...|-++
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s--pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES--PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC--CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 345566666666666532 334444555666666666666666666555443 111 12334555566667777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCCHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID----VVTYTTIVHGFGVVGEIKRARNVF 300 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 300 (493)
.|+.+|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+..+. ...|.-|...+....+.+.|..++
T Consensus 125 RAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l 203 (389)
T COG2956 125 RAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELL 203 (389)
T ss_pred HHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 777777776654322 345566677777777777777777776666644332 234555555566667777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 011137 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380 (493)
Q Consensus 301 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 380 (493)
.+..+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--+.+...|..+|.+.|+.++.+.++.++.+.. +
T Consensus 204 ~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~ 280 (389)
T COG2956 204 KKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--T 280 (389)
T ss_pred HHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--C
Confidence 777665332 3444445566777777888888877777777555455667777777777888887777777777653 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 011137 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
....-..+.+.-....-.+.|...+.+-... .|+...+..++..-..........+-+..++.|+.
T Consensus 281 g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 281 GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 3333333444433444445555544333332 37777777777655443333222225556666654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-10 Score=106.78 Aligned_cols=389 Identities=12% Similarity=0.055 Sum_probs=320.5
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH----HhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 84 LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHR----MKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
..|..+++..++ .+|.++..|-+....=.++|+.+...+++++ +...|+..+...|..=...|-..|..-.+..
T Consensus 423 enAkkvLNkaRe--~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQA 500 (913)
T KOG0495|consen 423 ENAKKVLNKARE--IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQA 500 (913)
T ss_pred HHHHHHHHHHHh--hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHH
Confidence 345556666655 3477899999999999999999999988876 4567888999999999999999999999999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011137 160 IFLSMHEHGCRQ--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRG 237 (493)
Q Consensus 160 ~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 237 (493)
+....+..|+.. ...+|+.-.+.|.+.+.++-|..+|....+-++.+...|......=-..|..++...+|++....-
T Consensus 501 Ii~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~ 580 (913)
T KOG0495|consen 501 IIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC 580 (913)
T ss_pred HHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999888777543 346888889999999999999999999998888899999998888888999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 238 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
.+ ....|......+-..|+...|..++....+.... +...|..-+..-....+++.|..+|.+.... .|+...|..
T Consensus 581 pk-ae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK 656 (913)
T KOG0495|consen 581 PK-AEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK 656 (913)
T ss_pred Cc-chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence 33 5667777788888899999999999999988554 8889999999999999999999999998774 567788877
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGKGYMPN-STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 396 (493)
-+....-.+..++|.+++++..+. -|+ ...|..+.+.+-+.++.+.|...|..-.+. ++...-.|-.|...=.+.|
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~ 733 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDG 733 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhc
Confidence 777777789999999999999886 344 456777888899999999999999887765 4556678888888888999
Q ss_pred CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC---------------------------
Q 011137 397 EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR--------------------------- 449 (493)
Q Consensus 397 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~--------------------------- 449 (493)
++-+|..++++..-.+ +-+...|-..|..=.+.|..+. |..++.+.++.
T Consensus 734 ~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~---a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DA 809 (913)
T KOG0495|consen 734 QLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ---AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDA 809 (913)
T ss_pred chhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH---HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHH
Confidence 9999999999988764 3478899999999899998888 55444443321
Q ss_pred --CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 450 --GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 450 --g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
...-|..+...+...|....+++.|++.|+...+.+
T Consensus 810 Lkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d 847 (913)
T KOG0495|consen 810 LKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD 847 (913)
T ss_pred HHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 123445556667777888888999999998887764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.7e-11 Score=105.77 Aligned_cols=162 Identities=13% Similarity=0.094 Sum_probs=80.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 323 (493)
|+..+.+-|.-.++.++|...|+...+.+.. ....|+.+.+-|....+...|++.|+..++-+. .|-..|-.|.++|.
T Consensus 332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYE 409 (559)
T ss_pred ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHH
Confidence 4444444455555555555555555554332 344455555555555555555555555554322 24445555555555
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
-.+...-|+-.|++..+... -|...|.+|..+|.+.++.++|++.|.+....| ..+...+..|.+.|-+.++.++|..
T Consensus 410 im~Mh~YaLyYfqkA~~~kP-nDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 410 IMKMHFYALYYFQKALELKP-NDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred HhcchHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence 55555555555555544421 144455555555555555555555555555443 2233445555555555555555555
Q ss_pred HHHHHh
Q 011137 404 LFEKMG 409 (493)
Q Consensus 404 ~~~~~~ 409 (493)
.|++-.
T Consensus 488 ~yek~v 493 (559)
T KOG1155|consen 488 YYEKYV 493 (559)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-11 Score=108.81 Aligned_cols=200 Identities=10% Similarity=-0.003 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 356 (493)
+.|+.++.+.|+-.++.++|...|++.++.+.. ....|+.+..-|....+...|.+-++..++-+.. |-..|-.+.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHH
Confidence 455666667788888899999999999986443 5678999999999999999999999999987543 78899999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccH
Q 011137 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDL 436 (493)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~ 436 (493)
|.-.+-..-|+-+|++..... +.|...|.+|.++|.+.++.++|++.|+.....|-. +...+..|...|-+.++.++
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~d~~e- 484 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNE- 484 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHH-
Confidence 999999999999999998874 568899999999999999999999999999886533 56889999999999999888
Q ss_pred HHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 437 LVAGKLLIEMVD----RGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 437 ~~A~~~~~~m~~----~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
|.+.+++-++ .|...+ .....-|..-+.+.+++++|..+.....+
T Consensus 485 --Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 485 --AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred --HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 7777776554 243322 22333355567788888888776655443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-11 Score=108.88 Aligned_cols=346 Identities=15% Similarity=0.135 Sum_probs=241.3
Q ss_pred hhChHHHHHHHHHhhcC-CCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHH
Q 011137 80 WNHALKALHFFNILSYH-PTYAHS--PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADR 156 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~-~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 156 (493)
.+...+|+.|++-...+ |.+..+ ....+.+-..+.+.|+++.|+..|+.+.+.. |+..+-..++-++..-|+.++
T Consensus 250 kr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ek 327 (840)
T KOG2003|consen 250 KREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEK 327 (840)
T ss_pred hhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHH
Confidence 35667788888776544 222211 2345555556677788888888887776654 565554455555555677777
Q ss_pred HHHHHHHHHhCCC------------CCCHHHHHH----------------------------------------------
Q 011137 157 AVKIFLSMHEHGC------------RQSLNSFNT---------------------------------------------- 178 (493)
Q Consensus 157 a~~~~~~~~~~~~------------~~~~~~~~~---------------------------------------------- 178 (493)
..+.|.+|..... .|+....|.
T Consensus 328 mkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle 407 (840)
T KOG2003|consen 328 MKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLE 407 (840)
T ss_pred HHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHH
Confidence 7777776653211 111111110
Q ss_pred -----------------HHHHHHccCCHHHHHHHHHHhhcCCCC----------------------C----------cch
Q 011137 179 -----------------ILDLLCKEKKVEKAYNLFKVFRGKFKA----------------------D----------VIS 209 (493)
Q Consensus 179 -----------------ll~~~~~~g~~~~A~~~~~~~~~~~~~----------------------~----------~~~ 209 (493)
-..-|.+.|+++.|.++++.+.+.... + ..-
T Consensus 408 ~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr 487 (840)
T KOG2003|consen 408 SLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR 487 (840)
T ss_pred HHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc
Confidence 011267789999999988877543110 0 000
Q ss_pred HHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 210 YNV-----IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284 (493)
Q Consensus 210 ~~~-----l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 284 (493)
||. -.+.....|++++|.+.|++.....-.-. .....+.-.+-..|++++|+..|-++... ...+..+...+.
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qia 565 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-EALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIA 565 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-HHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHH
Confidence 111 01112235889999999999987633322 23333445577889999999999877554 233777888899
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 364 (493)
..|....+..+|++++.+.... ++.|......|...|-+.|+-.+|.+.+-+-.+. ++-+..+...|...|....-++
T Consensus 566 niye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~e 643 (840)
T KOG2003|consen 566 NIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSE 643 (840)
T ss_pred HHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHH
Confidence 9999999999999999887664 5567889999999999999999999887655443 4557788889999999999999
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcc
Q 011137 365 RALEFVGRMKDDECEPNVQTYNILIRYF-CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434 (493)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 434 (493)
+++.+|++..- +.|+..-|..++..| .+.|++.+|.++|++..+. ++-|......|++.+...|-.+
T Consensus 644 kai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 644 KAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccchh
Confidence 99999998865 489999998887655 5789999999999999876 6778889999998887776543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-11 Score=104.94 Aligned_cols=284 Identities=11% Similarity=0.082 Sum_probs=148.2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC-CCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
.|+|.+|++...+-.+.+-. ....|..-..+--..|+.+.+-.++.+..+. ..++...+-+........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 67777777777776665522 2333444445556667777777777666543 223334455666666677777777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCCHHHHHHHHHH
Q 011137 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVV-------TYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
++++.+.+.. +.........+|.+.|++.+...++..+.+.|.-.+.. +|..+++-....+..+.-...++.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777666544 45566667777777777777777777777766543322 333333333333333333333333
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 011137 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382 (493)
Q Consensus 303 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (493)
.... .+.+...-..++.-+.+.|+.++|.++..+..+++..|. ...+ -.+.+.++.+.-.+..+...+.. +-++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~~~-~~~l~~~d~~~l~k~~e~~l~~h-~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LCRL-IPRLRPGDPEPLIKAAEKWLKQH-PEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HHHH-HhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence 3221 222333444445555555555555555555555443333 1111 12334444444444444443331 2233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
..+..|...|.+.+.+.+|...|+...+ ..|+..+|+.+..++.+.|+..+ |.+..++.+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~---A~~~r~e~L 388 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEE---AEQVRREAL 388 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHH---HHHHHHHHH
Confidence 4455555555555555555555554444 23555555555555555555555 444444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-09 Score=96.95 Aligned_cols=390 Identities=12% Similarity=0.067 Sum_probs=270.6
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 82 HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF 161 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 161 (493)
+...|..+|+.+.... .-+...|-.-+..=.++++...|..++++....-+. -...|...+..=-..|+...|.++|
T Consensus 88 e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaRqif 164 (677)
T KOG1915|consen 88 EIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGARQIF 164 (677)
T ss_pred HHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHHHHH
Confidence 4456888888876543 336667888888888888888898888888775322 2234555555555678888899999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-CC-C
Q 011137 162 LSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GL-N 239 (493)
Q Consensus 162 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~-~ 239 (493)
+...+. .|+...|++.|+.=.+.+.++.|..+++++.- ..|++.+|-.....=.+.|....|..+|+...+. |- .
T Consensus 165 erW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~-~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~ 241 (677)
T KOG1915|consen 165 ERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL-VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDE 241 (677)
T ss_pred HHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe-ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHH
Confidence 888764 68888999998888888888889888888764 3478888888888888888888888888877643 11 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------------------------------------------CCCCC
Q 011137 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-------------------------------------------KCEID 276 (493)
Q Consensus 240 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------------------------------~~~~~ 276 (493)
-+...+.+....-.++..++.|.-+|+-.+.. .-+.|
T Consensus 242 ~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~n 321 (677)
T KOG1915|consen 242 EAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYN 321 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCC
Confidence 11222333332222333333333333322221 12235
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH-----H---HHhcCCHHHHHHHHHHHHhCCCCCC
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV--ATYNAMIQ-----V---LCKKDSVENAILVFEEMVGKGYMPN 346 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~li~-----~---~~~~~~~~~a~~~~~~~~~~~~~~~ 346 (493)
-.+|--.++.-...|+.+...++|++.+.+ ++|-. ..|..-|- + -....+.+.+.++++..++. ++..
T Consensus 322 YDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 322 YDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 666777777777888999999999988876 33321 12221111 1 13467888899999888874 3334
Q ss_pred hhhHHHHHHHH----HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHH
Q 011137 347 STTYNVVIRGL----CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNI 422 (493)
Q Consensus 347 ~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 422 (493)
..||..+--.| .++.++..|.+++...+.. -|...++...|..=.+.++++.+..+|++..+-+ +-|..+|..
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~k 476 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSK 476 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHH
Confidence 55665544333 3678889999999888854 6788899999999999999999999999999863 236778888
Q ss_pred HHHHHhccCCcccHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 423 LISSMFVRKKSDDLLVAGKLLIEMVDRG-FMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 423 li~~~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
....=...|+.+. |..+|.-.++.. +......|.+.|.--...|.++.|..+++.+.+..
T Consensus 477 yaElE~~LgdtdR---aRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 477 YAELETSLGDTDR---ARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHHHHhhhHHH---HHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 8777777889998 889999888652 22235567777776677999999999998777643
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.4e-10 Score=100.92 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=152.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (493)
+.-.|+.-.|..-|+..+..... +...|--+..+|....+.++....|++....+.. +..+|..-.+.+.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 44467777888888888877544 3333666777788888888888888888776443 566777777777777888888
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
..=|++.+..... +...|..+..+.-+.+++++++..|++.++. ++--++.|+.....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 8888888776322 4455555555566778888888888888776 4556788888888888888888888888887763
Q ss_pred CCCCC-------HHHH--HHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 412 VCLPN-------LDTY--NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 412 ~~~p~-------~~~~--~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
.|+ ...+ ..++..- =.+++.. |.+++++.++. .|. ...|.+|...-...|+.++|+++|+..
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~---a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLVLQ-WKEDINQ---AENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred --ccccccccccchhhhhhhHhhhc-hhhhHHH---HHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222 1111 1111111 1144444 88888888874 344 556777887888888888888888765
Q ss_pred Hh
Q 011137 482 SR 483 (493)
Q Consensus 482 ~~ 483 (493)
..
T Consensus 564 a~ 565 (606)
T KOG0547|consen 564 AQ 565 (606)
T ss_pred HH
Confidence 43
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.1e-09 Score=94.48 Aligned_cols=351 Identities=12% Similarity=0.097 Sum_probs=223.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-CCCHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GC-RQSLNSFN 177 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~ 177 (493)
.|+...|.+.|..=.+-+..+.|..+|++..-. .|++..|....+.=.++|....|..+|+...+. |- ..+...++
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 446666666666666666666666666666543 256666666666666666666666666665532 10 01112233
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCC--cchHHHHHHHHHhcCChhHHHHH--------HHHHHhCCCCCCHHHHHH
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRGKFKAD--VISYNVIANGWCLVKRTNKALEV--------LKEMVDRGLNPNLTTYNI 247 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~--------~~~m~~~g~~p~~~~~~~ 247 (493)
+....=.++..++.|.-+|+-.....|.+ ...|......=-+-|+....... ++.+.+.+. .|-.+|--
T Consensus 249 aFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np-~nYDsWfd 327 (677)
T KOG1915|consen 249 AFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNP-YNYDSWFD 327 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCC-CCchHHHH
Confidence 33333333455555655555544444433 23344443333334444333222 233333332 26667777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHH--------HhccCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDV--VTYTTIVHG--------FGVVGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
.++.-...|+.+...++|+..... ++|-. ..|.-.|.. -....|.+.+.++|+..++. ++....||..
T Consensus 328 ylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaK 405 (677)
T KOG1915|consen 328 YLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAK 405 (677)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHH
Confidence 777777889999999999998876 33321 122222222 13567888999999998884 5556666665
Q ss_pred HHHHH----HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 011137 318 MIQVL----CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393 (493)
Q Consensus 318 li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (493)
+--.| .+..++..|.+++...+.. -|-..+|...|..=.+.++++.+..+|++.++-+ +-+..+|......=.
T Consensus 406 iWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~ 482 (677)
T KOG1915|consen 406 IWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYAELET 482 (677)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHH
Confidence 54444 4678889999998887754 6778888888888888999999999999999876 557888888888888
Q ss_pred hcCCHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 394 DAGEIERGLELFEKMGSGVC-LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463 (493)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 463 (493)
..|+.+.|..+|+-...... .-....|...|+-=...|.++. |..+++.+++. .+...+|.++..
T Consensus 483 ~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ek---aR~LYerlL~r--t~h~kvWisFA~ 548 (677)
T KOG1915|consen 483 SLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEK---ARALYERLLDR--TQHVKVWISFAK 548 (677)
T ss_pred HhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHH---HHHHHHHHHHh--cccchHHHhHHH
Confidence 89999999999998887521 1224456666666667777777 88999998875 344446665554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.1e-10 Score=115.03 Aligned_cols=249 Identities=14% Similarity=0.032 Sum_probs=144.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH---------ccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh
Q 011137 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLC---------KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223 (493)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (493)
++++|++.|++..+.. +.+...|..+..++. ..+++++|...+++..+..|.+..++..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH
Confidence 3566777777766643 233444544444332 223467777777777666666677777777777777777
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
++|...|++..+.+.. +...+..+...+...|++++|...+++..+.... +...+..++..+...|++++|+..++++
T Consensus 355 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~ 432 (553)
T PRK12370 355 IVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDEL 432 (553)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHH
Confidence 7777777777766433 4556666777777777777777777777776433 2223333344455567777777777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCC
Q 011137 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN-STTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEPN 381 (493)
Q Consensus 304 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~ 381 (493)
.....+-+...+..+..++...|+.++|...+.++... .|+ ....+.+...|+..| +.|...++.+.+. ...+.
T Consensus 433 l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 433 RSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred HHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 65432223444566666777777777777777766544 222 233444444555555 3666666655443 11121
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 382 VQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
...+ +-..|.-.|+-+.+..+ +++.+.
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1122 33333445565555544 666654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.2e-10 Score=106.44 Aligned_cols=296 Identities=13% Similarity=0.162 Sum_probs=212.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
.-....++...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+.+ +.+...|..+..+..-
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhh
Confidence 334456778899999999999886554 43445667788899999999999999999999876 4455556666666522
Q ss_pred c-----CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 186 E-----KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT-NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 186 ~-----g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
. .+.+....+|+.+....|.....-..-+. +....++ ..+..++..+..+|++ .+|+.+-..|....+.+
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAA 160 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHH
Confidence 2 35677788888887766433333222222 2222233 3455667777888876 36666666676666666
Q ss_pred HHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 011137 260 EAWRFFLEMKKR----K----------CEIDV--VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQVL 322 (493)
Q Consensus 260 ~a~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~ 322 (493)
-..+++...... + -+|+. .++..+...|...|++++|++++++.++.. |+ +..|..-...+
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHH
Confidence 666666665433 1 12333 355667788999999999999999999863 44 67888889999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH--------HHHHHHHHHh
Q 011137 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT--------YNILIRYFCD 394 (493)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~ 394 (493)
-+.|++.+|.+.++..+..... |...=+..+..+.+.|+.++|.+++....+.+..|.... ......+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988654 777888888899999999999999999987764333222 2456778889
Q ss_pred cCCHHHHHHHHHHHhc
Q 011137 395 AGEIERGLELFEKMGS 410 (493)
Q Consensus 395 ~g~~~~a~~~~~~~~~ 410 (493)
.|++..|++.|..+.+
T Consensus 318 ~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLK 333 (517)
T ss_pred HhhHHHHHHHHHHHHH
Confidence 9998888877766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-10 Score=102.78 Aligned_cols=287 Identities=12% Similarity=0.049 Sum_probs=192.4
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250 (493)
Q Consensus 171 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 250 (493)
.+........+-+...+++.+..++++.+.+..|+....+-.-|.++...|+..+-..+=.++.+.-+. ...+|-.+.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHH
Confidence 344444555555666777777777777777777777777777777777777777777777777766433 5667777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 330 (493)
.|.-.|+.++|.+.|.+....+.. =...|-...+.|...|.-++|+..|....+. ++-....+--+.--|.+.+..+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 777778888888888776655332 2446777777777778888887777766553 11122223334445667777888
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCC----CCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECE----PNVQTYNILIRYFCDAGEIERGLEL 404 (493)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~~~~l~~~~~~~g~~~~a~~~ 404 (493)
|.+.|.+..... +.|+..++-+.-.....+.+.+|..+|+..+.. .+. --..+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888877776552 235666666665555667777888777776522 001 1233567777888888888888888
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011137 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467 (493)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 467 (493)
+++.... .+.|..++.++.-.|...|+++. |+..|.+.+- +.|+..+...+++.+..
T Consensus 478 ~q~aL~l-~~k~~~~~asig~iy~llgnld~---Aid~fhKaL~--l~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 478 YQKALLL-SPKDASTHASIGYIYHLLGNLDK---AIDHFHKALA--LKPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHHc-CCCchhHHHHHHHHHHHhcChHH---HHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence 8877765 34477777777777777888887 8888887774 57777777776664433
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.1e-11 Score=118.79 Aligned_cols=150 Identities=9% Similarity=-0.006 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
+++|...+++..+.+.. +...+..+...+...|++++|+..|++..+.+. .+...+..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 320 MIKAKEHAIKATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSP-ISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55666666665555332 455555555555566666666666666655432 2344555555566666666666666666
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..+.+.. +...+..++..+...|++++|...++++.....+-+...+..+..++...|+.++|...++++..
T Consensus 398 Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 398 CLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 6555322 11122223333444556666666666655432122333455555555666666666666655544
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.5e-11 Score=103.01 Aligned_cols=198 Identities=13% Similarity=0.088 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++.....+.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3445555555555666666666665555432 233444555555555555555555555555444444444555555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 296 (493)
...|++++|.+.+++..+.... .....+..+..++...|++++|...+++..+.... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 5555555555555555543211 12233444445555555555555555555444221 334444455555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
...+++..+. .+.+...+..+...+...|+.++|..+.+.+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5555554443 1223333444444444555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.8e-10 Score=99.02 Aligned_cols=354 Identities=15% Similarity=0.097 Sum_probs=248.2
Q ss_pred ChHHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH-
Q 011137 82 HALKALHFFNILSYHPTYAHS-PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK- 159 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~- 159 (493)
..+.|++++.|+.+. .|+ +.-|......|...|+|+++.+.-....+.++ .-+.++..-.+++-..|++++|+.
T Consensus 130 kY~eAIkyY~~AI~l---~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P-~Y~KAl~RRA~A~E~lg~~~eal~D 205 (606)
T KOG0547|consen 130 KYDEAIKYYTQAIEL---CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNP-DYVKALLRRASAHEQLGKFDEALFD 205 (606)
T ss_pred cHHHHHHHHHHHHhc---CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCc-HHHHHHHHHHHHHHhhccHHHHHHh
Confidence 358899999999765 355 78899999999999999999887777766532 123455555556666666665531
Q ss_pred ---------------------HHHHH--------Hh-CC--CCCCHHHHHHHHHHHHc---------c------------
Q 011137 160 ---------------------IFLSM--------HE-HG--CRQSLNSFNTILDLLCK---------E------------ 186 (493)
Q Consensus 160 ---------------------~~~~~--------~~-~~--~~~~~~~~~~ll~~~~~---------~------------ 186 (493)
+++.. .+ .+ .-|+....++....+.. .
T Consensus 206 ~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~ 285 (606)
T KOG0547|consen 206 VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALE 285 (606)
T ss_pred hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHH
Confidence 11111 01 11 12333333332222211 0
Q ss_pred ----C---CHHHHHHHHHHhhcC--CCC--C---------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 011137 187 ----K---KVEKAYNLFKVFRGK--FKA--D---------VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246 (493)
Q Consensus 187 ----g---~~~~A~~~~~~~~~~--~~~--~---------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 246 (493)
+ .+..|.+.+.+-... ..+ + ..+.....-.+.-.|+...|..-|+..+.....++ ..|-
T Consensus 286 ~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI 364 (606)
T KOG0547|consen 286 ALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYI 364 (606)
T ss_pred HHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHHH
Confidence 0 122222222211100 111 1 22333333445668999999999999998765533 3388
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKD 326 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 326 (493)
.+...|....+.++.++.|++..+.+.. ++.+|..-...+.-.+++++|..-|++.+..... +...|-.+.-+..+.+
T Consensus 365 ~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~ 442 (606)
T KOG0547|consen 365 KRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQH 442 (606)
T ss_pred HHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHH
Confidence 8889999999999999999999998655 7888989999999999999999999999886332 5667777777778899
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-------CCCHHHHHHHHHHHHhcCCHH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-------EPNVQTYNILIRYFCDAGEIE 399 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~ 399 (493)
.+++++..|++..++ ++-.+..|+.....+...++++.|.+.|+..++... .+.+.+.-.++..-.+ +++.
T Consensus 443 k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~ 520 (606)
T KOG0547|consen 443 KIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDIN 520 (606)
T ss_pred HHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHH
Confidence 999999999999987 444678999999999999999999999999887521 1222333334443344 8999
Q ss_pred HHHHHHHHHhcCCCCC-CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 400 RGLELFEKMGSGVCLP-NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 400 ~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
.|..++++..+. .| ....|..|...-.+.|+.++ |+++|++....
T Consensus 521 ~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~e---AielFEksa~l 566 (606)
T KOG0547|consen 521 QAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDE---AIELFEKSAQL 566 (606)
T ss_pred HHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHH---HHHHHHHHHHH
Confidence 999999999985 34 45689999999999999999 99999987753
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-10 Score=102.38 Aligned_cols=198 Identities=11% Similarity=0.076 Sum_probs=106.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (493)
.+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+.... +...+..+...+.
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~ 110 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTFLC 110 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 3444455555555555555555555443221 3344455555555555555555555555544322 3444555555555
Q ss_pred ccCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 011137 289 VVGEIKRARNVFDGMVNGGV-LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERAL 367 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 367 (493)
..|++++|.+.+++...... ......+..+...+...|++++|...+++..+.... +...+..+...+...|++++|.
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 55555555555555554311 112334445555566666666666666666554221 3445555666666666666666
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..+++.... .+.+...+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 666666554 233455555566666666666666666665543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-10 Score=103.24 Aligned_cols=286 Identities=11% Similarity=0.075 Sum_probs=230.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
-+........+.+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++....|....+|..+.-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGC 320 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHH
Confidence 455666667777888999999999999998864 6677778888889999999887777777788888889999999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
-|...|+..+|.+.|.+....+.. =...|......++-.|..|.|+..+...-+.-.. .-.-+--+.--|.+.++.+.
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHH
Confidence 999999999999999998654322 2357888899999999999999999887765111 11112234456788999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK----G--YMPNSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
|.+.|.+.... .+.|....+.+.-.....+.+.+|..+|+..... + ..-...+++.|..+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 99999998875 3347778888888888899999999999887632 1 112445688889999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
++..+... +.+..++.++.-.|...|+++.|.+.|.+..- +.||..+-..++..+.
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999875 66899999999999999999999999999887 5788777777666544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-11 Score=102.77 Aligned_cols=228 Identities=13% Similarity=0.112 Sum_probs=106.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 187 (493)
.+...|.+.|-+.+|.+.++.-...- |-+.||..+-+.|.+..++..|+.+|.+-.+. ++-++....-....+-..+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHHH
Confidence 34444455555555555554444332 34445555555555555555555555544442 1222222233333444445
Q ss_pred CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
+.++|.++|+...+..+.++.+...+..+|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.+++|-++.-|..
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 5555555555544444444444444444455555555555555555555544 444455555555555555555555544
Q ss_pred HHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 268 MKKRKCEID--VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 268 ~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
....-..++ ..+|..+.......||+..|.+.|+-....+. .....++.|.-.-.+.|++++|..++.....
T Consensus 384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 443322111 23344444444445555555555554444322 1334444444444455555555555544443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.42 E-value=1e-09 Score=104.47 Aligned_cols=296 Identities=14% Similarity=0.145 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
..--....+...|++++|++.++.-... +.............+.+.|+.++|..++..+..+.|.|..-|..+..+..-
T Consensus 6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~ 84 (517)
T PF12569_consen 6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGL 84 (517)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhh
Confidence 3334455567788888888888765543 334455666677778888888888888888877766666666666666522
Q ss_pred c-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 220 V-----KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI-EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 220 ~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
. .+.+...++|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+++.|-..|....+.
T Consensus 85 ~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 85 QLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKA 159 (517)
T ss_pred hcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHH
Confidence 2 24566677777776553 3333333232222222222 2344555566666654 3455666666655555
Q ss_pred HHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHH
Q 011137 294 KRARNVFDGMVNG----G----------VLPSV--ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN-STTYNVVIRG 356 (493)
Q Consensus 294 ~~A~~~~~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~ 356 (493)
+-..+++...... + -.|+. .++..+...|...|++++|++++++.++.. |+ +..|..-.+.
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~Kari 237 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARI 237 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHH
Confidence 5555555554322 0 12333 244556677777788888888887777763 33 5566667777
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHH--------HHHHHHHh
Q 011137 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY--------NILISSMF 428 (493)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--------~~li~~~~ 428 (493)
+-+.|++.+|.+.++...... .-|..+-+-.+..+.++|++++|.+++....+.+..|-...+ .....+|.
T Consensus 238 lKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~ 316 (517)
T PF12569_consen 238 LKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYL 316 (517)
T ss_pred HHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHH
Confidence 777788888888877777765 336666666777777778888888777777665443222111 12234455
Q ss_pred ccCCcccHHHHHHHHHHHH
Q 011137 429 VRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~ 447 (493)
+.|++.. |++.|....
T Consensus 317 r~~~~~~---ALk~~~~v~ 332 (517)
T PF12569_consen 317 RQGDYGL---ALKRFHAVL 332 (517)
T ss_pred HHhhHHH---HHHHHHHHH
Confidence 5555555 555555544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-08 Score=93.91 Aligned_cols=400 Identities=16% Similarity=0.141 Sum_probs=264.0
Q ss_pred HHHHHHHHHh-hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011137 71 LVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149 (493)
Q Consensus 71 ~~~~~l~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (493)
++.+++.-.- ......+.+.+.+.+. ++-..++.....-.+...|+-++|....+.-.+..+ -+...|..+.-.+.
T Consensus 10 lF~~~lk~yE~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 10 LFRRALKCYETKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHh
Confidence 3444444332 3456677777777663 344566666666667778889999888887776544 56778888888888
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
..+++++|++.|......+ +.+...|.-+.-.-.+.|+++.....-....+-.+.....|..++.++.-.|+...|..+
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999998875 566777777666666777777776666666555555677888888888889999999999
Q ss_pred HHHHHhCC-CCCCHHHHHHHH------HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 230 LKEMVDRG-LNPNLTTYNIVL------KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 230 ~~~m~~~g-~~p~~~~~~~l~------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
+++..+.. ..|+...|.... ....+.|..++|.+.+...... +.-....-.+-...+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 98887654 245555554332 3345677778887777665554 221333344556677888889999999888
Q ss_pred HHHCCCCCCHHHHHHHHH-HHHhcCCHHHHH-HHHHH----------------------------------HHhCCCCCC
Q 011137 303 MVNGGVLPSVATYNAMIQ-VLCKKDSVENAI-LVFEE----------------------------------MVGKGYMPN 346 (493)
Q Consensus 303 ~~~~~~~~~~~~~~~li~-~~~~~~~~~~a~-~~~~~----------------------------------~~~~~~~~~ 346 (493)
++.. .||...|..... ++.+-.+.-++. .+|.. +.+.|+++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~- 321 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS- 321 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc-
Confidence 8875 355555544333 332222222222 33333 33333322
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhh----hCC----------CCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 347 STTYNVVIRGLCHTGEMERALEFVGRMK----DDE----------CEPNVQT--YNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 347 ~~~~~~li~~~~~~~~~~~a~~~~~~~~----~~~----------~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
++..+...|-.....+-..++.-.+. ..| -+|.... +-.++..|-+.|+++.|..+++....
T Consensus 322 --vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId 399 (700)
T KOG1156|consen 322 --VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID 399 (700)
T ss_pred --hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc
Confidence 23333333322111111111111111 111 1445444 45677888999999999999999998
Q ss_pred CCCCCC-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011137 411 GVCLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486 (493)
Q Consensus 411 ~~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 486 (493)
+ .|+ +..|..-.+.+...|..++ |..++++..+.+ .+|+..-..-.+...++.+.++|.+++..+.+.|.
T Consensus 400 H--TPTliEly~~KaRI~kH~G~l~e---Aa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 400 H--TPTLIELYLVKARIFKHAGLLDE---AAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred c--CchHHHHHHHHHHHHHhcCChHH---HHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 5 454 4566666788899999999 999999999875 57776666777788899999999999999988875
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.3e-11 Score=100.43 Aligned_cols=232 Identities=12% Similarity=0.057 Sum_probs=179.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 254 (493)
--+-+.++|.+.|.+.+|.+.|+..... .|-+.||..|.+.|.+..+++.|+.++.+-.+.- +-|+....-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHH
Confidence 3366778888888888888888766543 4567788888888888888888888888877652 2244444567778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334 (493)
Q Consensus 255 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 334 (493)
.++.++|.++++...+.. +.++.....+...|.-.++++.|+.+|+++.+.|+. +...|+.+.-+|.-.++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 888888999988888773 336677777777788888889999999988888875 777888888888888888888888
Q ss_pred HHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 335 FEEMVGKGYMPN--STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 335 ~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
|.+....--.|+ ...|..+.......||+..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887776533333 3467677777778889999999988888765 446778888888888899999999988887763
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.6e-11 Score=112.54 Aligned_cols=274 Identities=12% Similarity=0.139 Sum_probs=165.2
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC
Q 011137 124 TLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF 203 (493)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 203 (493)
.++-.+...|+.|+..||..+|..|+..|+.+.|- +|.-|.-...+.+...++.++......++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 35556667777788888888888888888777776 7777776666666777777777777777766554
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 011137 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTT 282 (493)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ 282 (493)
.|...+|..|..+|...|+... ++..++ -.-.+...+...|.-.....++..+.-. +.-||.. .
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---N 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---H
Confidence 5667777777777777777765 222222 1122334445555555555555443221 2333332 2
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG 361 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~ 361 (493)
.+....-.|.++.+++++..+....-.. .+..+++-+... ..+++-..+.....+ .|++.+|..++.+-.-.|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 3334444555666666655442211100 111112222221 222332222222222 467778888888777788
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCC
Q 011137 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432 (493)
Q Consensus 362 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 432 (493)
+.+.|..++.+|.+.|++.+..-|-.|+-+ .|+..-+..+++-|.+.|+.|+..|+...+..+..+|.
T Consensus 219 ~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred chhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 888888888888888877777766666655 67777777777888888888888887777766666443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.5e-10 Score=108.46 Aligned_cols=246 Identities=12% Similarity=0.065 Sum_probs=165.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011137 96 HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175 (493)
Q Consensus 96 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 175 (493)
..|..|+..+|.++|.-|+..|+.+.|- +|.-|.-...+.+...|+.++.+....++.+.+. .|...+
T Consensus 18 ~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDt 85 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADT 85 (1088)
T ss_pred HhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhH
Confidence 3478889999999999999999999998 9999998888889999999999988888887775 578899
Q ss_pred HHHHHHHHHccCCHHH---HHHHHHHhhcCCCCC----cchH---------------HHHHHHHHhcCChhHHHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEK---AYNLFKVFRGKFKAD----VISY---------------NVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~---A~~~~~~~~~~~~~~----~~~~---------------~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
|..|..+|...||+.. ..+.+..+...+.+. ..-| ...+......|-++.+++++..+
T Consensus 86 yt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 86 YTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999654 333222222211111 0111 11222222334444444444433
Q ss_pred HhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 011137 234 VDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312 (493)
Q Consensus 234 ~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 312 (493)
.... ..|..+ .++-+... .....++........-.++..+|..+++.-...|+.+.|..++.+|.+.|.+.+.
T Consensus 166 Pvsa~~~p~~v----fLrqnv~~--ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~ 239 (1088)
T KOG4318|consen 166 PVSAWNAPFQV----FLRQNVVD--NTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRA 239 (1088)
T ss_pred CcccccchHHH----HHHHhccC--CchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCccc
Confidence 2111 111111 23333222 2233344433333222578888888888888888888888888888888888777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011137 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 362 (493)
.-|-.|+-+ .++...+..+++-|.+.|+.|+..|+..-+..+...|.
T Consensus 240 HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 240 HYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred ccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 766666654 77788888888888888888888888877777777544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.2e-08 Score=85.59 Aligned_cols=387 Identities=11% Similarity=0.075 Sum_probs=223.6
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
++..-|+.+.+....... .-...+---+...+.+.|++++|...|..+.... .++...+..+.-++.-.|.+.+|..+
T Consensus 36 rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~ 113 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSI 113 (557)
T ss_pred ccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHH
Confidence 456678887777643221 1112233334556678899999999999887753 46777777777777778889998887
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
-....+ ++-.-..+...--+.|+-++-..+-+.+.. ...---.|.......-.+.+|++++......+ |
T Consensus 114 ~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ 182 (557)
T KOG3785|consen 114 AEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--P 182 (557)
T ss_pred HhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--h
Confidence 655432 333334445555566776665554444433 22333445555555667899999999988653 3
Q ss_pred CHHHHHH-HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-----------
Q 011137 241 NLTTYNI-VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV----------- 308 (493)
Q Consensus 241 ~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----------- 308 (493)
+-...|. +.-+|.+..-++-+.++++-..+. ++-++...|....-..+.=+-..|++-.+++...+.
T Consensus 183 ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 183 EYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 4444443 455677888888888998888776 333445555444333222111122222222211100
Q ss_pred ---------------CC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH------------
Q 011137 309 ---------------LP-----SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG------------ 356 (493)
Q Consensus 309 ---------------~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~------------ 356 (493)
-| -...-..|+--|.+.+++.+|..+.+++.-. .|-......++.+
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHl 339 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHL 339 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHH
Confidence 00 0112233455577888888888887765322 2222222222211
Q ss_pred -----------------------------HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 357 -----------------------------LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEK 407 (493)
Q Consensus 357 -----------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 407 (493)
+.-..++++.+-++..+..--...|... -.+.++++..|++.+|+++|-.
T Consensus 340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~ 418 (557)
T KOG3785|consen 340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIR 418 (557)
T ss_pred HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhh
Confidence 1111122333333333322211112222 3477888899999999999988
Q ss_pred HhcCCCCCCHHHHHH-HHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 408 MGSGVCLPNLDTYNI-LISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV-LNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 408 ~~~~~~~p~~~~~~~-li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
+....++ |..+|.. |.++|.+.++++- |+.++-++. -..+..+...+ ...|.+.+.+--|-+.|+++.+..
T Consensus 419 is~~~ik-n~~~Y~s~LArCyi~nkkP~l---AW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 419 ISGPEIK-NKILYKSMLARCYIRNKKPQL---AWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred hcChhhh-hhHHHHHHHHHHHHhcCCchH---HHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 8765444 5556655 5567888888887 666555443 23334444444 447999999999999999888876
Q ss_pred CCCccc
Q 011137 486 RLPRQF 491 (493)
Q Consensus 486 ~~~~~~ 491 (493)
-.|..|
T Consensus 492 P~pEnW 497 (557)
T KOG3785|consen 492 PTPENW 497 (557)
T ss_pred CCcccc
Confidence 666544
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-09 Score=101.80 Aligned_cols=237 Identities=19% Similarity=0.154 Sum_probs=166.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHC-----CCC-
Q 011137 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KC-EIDVV-TYTTIVHGFGVVGEIKRARNVFDGMVNG-----GVL- 309 (493)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~- 309 (493)
.+...+...|...|+++.|+.+++...+. |. .+... ..+.+...|...+++++|..+|+++... |-.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 45566788888888888888888776654 21 12222 2334667788888999998888887642 221
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC
Q 011137 310 P-SVATYNAMIQVLCKKDSVENAILVFEEMVGK-----GY-MPNS-TTYNVVIRGLCHTGEMERALEFVGRMKDD---EC 378 (493)
Q Consensus 310 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~ 378 (493)
| -..+++.|...|.+.|++++|..+++...+- |. .|.. ..++.+...|+..+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1346777788899999998888877765432 11 1222 24566677788889999999988876543 11
Q ss_pred CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-----C-CC-CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 379 EP----NVQTYNILIRYFCDAGEIERGLELFEKMGSG-----V-CL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 379 ~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~-p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
.+ -..+++.|...|...|++++|.++++++... | .. -....++.+...|.+.++.++ |.++|.+..
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~---a~~l~~~~~ 436 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE---AEQLFEEAK 436 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch---HHHHHHHHH
Confidence 12 2457899999999999999999999988653 1 11 235567888889999999998 777777644
Q ss_pred H----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 448 D----RGF-MPR-KFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 448 ~----~g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
. .|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 221 233 5678889999999999999999998665
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.5e-07 Score=85.45 Aligned_cols=146 Identities=11% Similarity=0.112 Sum_probs=91.3
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 87 LHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
.+.|+.+...-........|...+......+-++.+..+|++..+. ++..-.-.+..++..+++++|-+.+.....
T Consensus 122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln 197 (835)
T KOG2047|consen 122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLN 197 (835)
T ss_pred HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcC
Confidence 3444444333333444556777777777778888888888887764 444566677788888999999888887763
Q ss_pred CC------CCCCHHHHHHHHHHHHccCCHHHHHH---HHHHhhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 167 HG------CRQSLNSFNTILDLLCKEKKVEKAYN---LFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 167 ~~------~~~~~~~~~~ll~~~~~~g~~~~A~~---~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.. .+.+...|.-+.+...+..+.-.... +++.+..+++... ..|+.|.+-|.+.|.+++|..+|++.++.
T Consensus 198 ~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~ 277 (835)
T KOG2047|consen 198 QDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT 277 (835)
T ss_pred chhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 21 13445566666666665544333222 2333333332221 35778888888888888888888776653
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.8e-12 Score=79.55 Aligned_cols=50 Identities=38% Similarity=0.821 Sum_probs=31.9
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011137 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254 (493)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 254 (493)
||..+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 45666666666666666666666666666666666666666666666553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.1e-07 Score=84.18 Aligned_cols=269 Identities=16% Similarity=0.097 Sum_probs=156.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHH
Q 011137 134 LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI 213 (493)
Q Consensus 134 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 213 (493)
.+.++.....+...+...|+.++|+..|++....+ +-+..........+.+.|+.+....+...+-....-....|..-
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~ 306 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH 306 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh
Confidence 34456666667777777777777777777665432 11222222223334556666665555555444333344445555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
+......++++.|+.+-++.++.... +...|-.-.+.+...|+.++|.-.|....... +.+...|.-|+++|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 55555666777777777766655433 44555555566666777777777777666552 23566777777777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHH
Q 011137 294 KRARNVFDGMVNGGVLPSVATYNAMI-QVLC-KKDSVENAILVFEEMVGKGYMPN-STTYNVVIRGLCHTGEMERALEFV 370 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~ 370 (493)
.+|.-+-+...+. ...+..+...+. ..+. ....-++|.++++..... .|+ ....+.+...|...|..+.++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7766555544332 222344444332 2222 222345666666665554 333 234455556666777777777777
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
++.... .||....+.|.+.+...+.+++|++.|.....
T Consensus 462 e~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 462 EKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 776654 56777777777777777777777777777666
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-08 Score=87.07 Aligned_cols=286 Identities=12% Similarity=0.054 Sum_probs=220.3
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011137 84 LKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLS 163 (493)
Q Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 163 (493)
..|...|-.+.....++.+......+...+...|+..+|+..|+.....++ -+........-.+.+.|+.+....+...
T Consensus 213 s~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp-y~i~~MD~Ya~LL~~eg~~e~~~~L~~~ 291 (564)
T KOG1174|consen 213 SDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP-DNVEAMDLYAVLLGQEGGCEQDSALMDY 291 (564)
T ss_pred chhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh-hhhhhHHHHHHHHHhccCHhhHHHHHHH
Confidence 345555555666667788999999999999999999999999999887643 2333333344456678999988888887
Q ss_pred HHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 011137 164 MHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243 (493)
Q Consensus 164 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 243 (493)
+.... ..+..-|-.-+..+....+++.|+.+-++.....+.+...|-.-...+...|++++|.-.|+......+ -+..
T Consensus 292 Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~ 369 (564)
T KOG1174|consen 292 LFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLE 369 (564)
T ss_pred HHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHH
Confidence 77543 234444555556667788999999998887776677888888888889999999999999999886532 2678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV-HGFG-VVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQ 320 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~ 320 (493)
.|..++.+|...|++.+|.-+-+...+. .+.+..+.+.+. ..+. ...--++|.+++++.... .|+ ....+.+..
T Consensus 370 ~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AE 446 (564)
T KOG1174|consen 370 IYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAE 446 (564)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHH
Confidence 9999999999999999998887776654 333555555442 2222 222357899999887764 454 446677888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
.+...|..+.+..+++..... .||....+.|.+.+...+.+.+|++.|......+
T Consensus 447 L~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 447 LCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 899999999999999998875 6899999999999999999999999999998763
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.8e-08 Score=90.54 Aligned_cols=307 Identities=10% Similarity=0.003 Sum_probs=180.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSL-GPTQ-KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT- 178 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~- 178 (493)
.+..|..+...+...|+.+.+...+....+... ..+. .........+...|++++|.+.+++..+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 455667777777777878777666666544322 1222 222333445667889999999999888753 344444442
Q ss_pred --HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 179 --ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 179 --ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
........+..+.+.+.++......+........+...+...|++++|.+.+++..+.... +...+..+..++...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence 1222222455555555555422333333345556667888899999999999999887543 5667788888889999
Q ss_pred CHHHHHHHHHHHHHCCCC-CC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhcCCHH
Q 011137 257 QIEEAWRFFLEMKKRKCE-ID--VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV-LPSVATY-N--AMIQVLCKKDSVE 329 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~~ 329 (493)
++++|...+++....... ++ ...|..+...+...|++++|..++++...... .+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999888775321 22 23455678888899999999999998764322 1111111 1 2223333344332
Q ss_pred HHHHH--H-HHHHhCCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--------CCHHHHHHHHHHHHhcCC
Q 011137 330 NAILV--F-EEMVGKGY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE--------PNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 330 ~a~~~--~-~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~ 397 (493)
.+... + ........ ............++...|+.+.|..+++.+...... ..........-++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 22222 1 11111100 111122224556677788888888888887653211 012222233334557888
Q ss_pred HHHHHHHHHHHhc
Q 011137 398 IERGLELFEKMGS 410 (493)
Q Consensus 398 ~~~a~~~~~~~~~ 410 (493)
.++|.+.+.....
T Consensus 323 ~~~A~~~L~~al~ 335 (355)
T cd05804 323 YATALELLGPVRD 335 (355)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877665
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.5e-11 Score=77.61 Aligned_cols=49 Identities=45% Similarity=0.752 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 380 PNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 380 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444455555555555555555555555554445555555555544443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-08 Score=92.38 Aligned_cols=94 Identities=11% Similarity=-0.027 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
|..+...+...|+.++|...|++..+.... +...|+.+...+...|++++|...|+...+.... +..+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 444444444455555555555554443322 3444555555555555555555555555443222 33444444444555
Q ss_pred cCCHHHHHHHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVN 305 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~ 305 (493)
.|++++|++.|++..+
T Consensus 145 ~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 145 GGRYELAQDDLLAFYQ 160 (296)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5555555555555444
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.8e-09 Score=100.28 Aligned_cols=235 Identities=16% Similarity=0.156 Sum_probs=131.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcC-------CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CC
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGK-------FKADVIS-YNVIANGWCLVKRTNKALEVLKEMVDR-----GL-NP 240 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g~-~p 240 (493)
+...+...|...|+++.|+.+++..... ..+.+.+ .+.+...|...+++++|..+|+++... |- .|
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3334555555555555555555433221 1222222 233555566666666666666665421 11 11
Q ss_pred C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CC-HHHHHHHHHHHhccCCHHHHHHHHHHHHHC---CCC
Q 011137 241 N-LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KCE-ID-VVTYTTIVHGFGVVGEIKRARNVFDGMVNG---GVL 309 (493)
Q Consensus 241 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~ 309 (493)
. ..+++.|...|.+.|++++|...++...+. +.. +. ...++.+...++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1 244555666666666666666555544332 111 11 223444555666667777777666654321 111
Q ss_pred CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CC--CC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--
Q 011137 310 PS----VATYNAMIQVLCKKDSVENAILVFEEMVGK----GY--MP-NSTTYNVVIRGLCHTGEMERALEFVGRMKDD-- 376 (493)
Q Consensus 310 ~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~--~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 376 (493)
++ ..+++.|...|...|++++|.+++++.+.. +. .+ ....++.+...|.+.+++.+|.++|.+...-
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 346777777888888888888877766543 11 11 2345667777777777777777777664321
Q ss_pred --C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 377 --E--CEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 377 --~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
| .+-...+|..|...|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 12234577888888888888888888877665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7e-07 Score=83.64 Aligned_cols=127 Identities=17% Similarity=0.250 Sum_probs=82.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPN-VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
++..++..+-+.|+++.|+.+++..+.+ .|+ ++.|..=...+...|++++|..++++..+.+ .+|...-.--+.-.
T Consensus 373 t~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYm 449 (700)
T KOG1156|consen 373 TLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHH
Confidence 3445667777888888888888888876 344 4456566677888888998888888887753 24544444455555
Q ss_pred hccCCcccHHHHHHHHHHHHHCCCCCCHHH--------HHHH--HHHHHHcCCHHHHHHHHHHHHh
Q 011137 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKFT--------FNRV--LNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~--------~~~l--~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.+.++.++ |.++.....+.|. +... |..+ ..+|.++|++.+|++-+....+
T Consensus 450 LrAn~i~e---A~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 450 LRANEIEE---AEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred HHccccHH---HHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHH
Confidence 66777777 7777777776653 2221 2222 2267777777777665554433
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-08 Score=91.66 Aligned_cols=218 Identities=10% Similarity=-0.040 Sum_probs=126.2
Q ss_pred CCHHHHHHHHHHHHhCC-CCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHH
Q 011137 152 GKADRAVKIFLSMHEHG-CRQ--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (493)
+..+.++.-+.++.... ..| ....|..+...|...|+.++|...|++..+..|.+...|+.+...+...|++++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 34455555555555321 111 234466666677777777777777777776666677777777777888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 011137 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308 (493)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 308 (493)
.|++..+.... +..++..+..++...|++++|.+.++...+.... +. ........+...++.++|.+.|++.....
T Consensus 120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~- 195 (296)
T PRK11189 120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL- 195 (296)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence 88777765433 4566677777777778888888888777765332 22 11222223344567777777776654332
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGK---GYM---PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 309 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
.++...+ .+ .....|+...+ ..+..+.+. ... .....|..+...+.+.|++++|...|++....+
T Consensus 196 ~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 2222211 12 22234444333 233333321 100 122456666666677777777777777776654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.24 E-value=4e-07 Score=86.94 Aligned_cols=377 Identities=14% Similarity=0.110 Sum_probs=254.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQSLNSFNT 178 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~ 178 (493)
..++..|..+.-++.+.|++..+.+.|++...... -....|..+...|...|.-..|+.+++.-....- +++...+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 45888999999999999999999999999776433 4667889999999999999999999887664321 233444443
Q ss_pred HHHHHH-ccCCHHHHHHHHHHhhc--C---CCCCcchHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCC
Q 011137 179 ILDLLC-KEKKVEKAYNLFKVFRG--K---FKADVISYNVIANGWCLV-----------KRTNKALEVLKEMVDRGLNPN 241 (493)
Q Consensus 179 ll~~~~-~~g~~~~A~~~~~~~~~--~---~~~~~~~~~~l~~~~~~~-----------~~~~~A~~~~~~m~~~g~~p~ 241 (493)
.-..|. +.+.+++++++-.+... + .......|..+.-+|... ....++++.+++..+.+.. |
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 334443 34667776666555433 1 112333455554444331 2235677778888766543 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-CCCC----------
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-GVLP---------- 310 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~---------- 310 (493)
......+.--|+..++++.|.....+..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |...
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 33333345556677889999999999988866668889999999999999999999998876543 1100
Q ss_pred --------CHHHHHHHHHHHHh-----------------------cCCHHHHHHHHHHH--------HhCC---------
Q 011137 311 --------SVATYNAMIQVLCK-----------------------KDSVENAILVFEEM--------VGKG--------- 342 (493)
Q Consensus 311 --------~~~~~~~li~~~~~-----------------------~~~~~~a~~~~~~~--------~~~~--------- 342 (493)
-..|...++..+-. .++..+|.+..+.+ ...|
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 01122222222210 00111111111111 0001
Q ss_pred CC--CC------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 343 YM--PN------STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 343 ~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
+. |+ ...|......+.+.+..++|...+.+..+.. +.....|......+...|..++|.+.|...... .
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--d 714 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--D 714 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--C
Confidence 01 11 1234455566778888888988888887753 556777888888889999999999999988874 4
Q ss_pred C-CHHHHHHHHHHHhccCCcccHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 415 P-NLDTYNILISSMFVRKKSDDLLVAGK--LLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 415 p-~~~~~~~li~~~~~~~~~~~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
| ++....++...+.+.|+..- |.+ ++.++.+.+ .-+...|..+...+.+.|+.+.|.+.|....+..
T Consensus 715 P~hv~s~~Ala~~lle~G~~~l---a~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 715 PDHVPSMTALAELLLELGSPRL---AEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CCCcHHHHHHHHHHHHhCCcch---HHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 5 46778889999999998877 666 999999875 5569999999999999999999999998766643
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-08 Score=81.03 Aligned_cols=197 Identities=12% Similarity=0.028 Sum_probs=108.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
...+.-.|...|+...|.+-+++.++.+ +.+..+|..+...|.+.|+.+.|.+.|++..+..+.+....|.....+|..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhC
Confidence 3344445666666666666666666543 334445555555666666666666666655555555555666666666666
Q ss_pred CChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 011137 221 KRTNKALEVLKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 299 (493)
|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+.... ...+...+.....+.|++-.|...
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHH
Confidence 66666666666655431 1112345555555556666666666666665555332 333444555555556666666655
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
++.....+. ++....-..|+.-...|+.+.+-+.=..+.+
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 555555443 4555555555555555555555554444443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8e-07 Score=83.14 Aligned_cols=371 Identities=11% Similarity=0.113 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSL-SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
..|-.-+..+..+|+.......|+..... .+......|...+......|-++-++.+|++.++. ++..-+-.|..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 35677777778888888888888876543 34445678888888888999999999999999874 33446778888
Q ss_pred HHccCCHHHHHHHHHHhhcC-------CCCCcchHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCC--HHHHHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGK-------FKADVISYNVIANGWCLVKRTN---KALEVLKEMVDRGLNPN--LTTYNIVLK 250 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~--~~~~~~l~~ 250 (493)
+++.+++++|.+.+..+... .+.+...|..+-+...+.-+.- ...++++.+..+ -+| ...|..|..
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 99999999999988876532 4556667877777766654332 233344444432 233 357899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----------------------------------------
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV----------------------------------------- 289 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----------------------------------------- 289 (493)
.|.+.|.+++|..+|++....-. +..-++.+.++|..
T Consensus 257 YYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 99999999999999998776521 22222222222211
Q ss_pred -------------------------cCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 290 -------------------------VGEIKRARNVFDGMVNGGVLP------SVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 290 -------------------------~g~~~~A~~~~~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
.|+..+-..+|.+..+. +.| -...|..+.+.|-..|+++.|..+|++.
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka 413 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA 413 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence 11122223333333322 111 1234566777788888899999988888
Q ss_pred HhCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----------------CCHHHHHHHHHHHHhcCCH
Q 011137 339 VGKGYMPN---STTYNVVIRGLCHTGEMERALEFVGRMKDDECE-----------------PNVQTYNILIRYFCDAGEI 398 (493)
Q Consensus 339 ~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~g~~ 398 (493)
.+...+-- ..+|......=.+..+++.|+++++.....--. -+...|..+++.-...|-+
T Consensus 414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf 493 (835)
T KOG2047|consen 414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF 493 (835)
T ss_pred hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence 77644321 234444455555677888888888776532111 1234466666666677888
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHH---cCCHHHH
Q 011137 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLL---IGNQGLA 474 (493)
Q Consensus 399 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~---~g~~~~a 474 (493)
+....+|+++.+..+. ++.+.......+-.+..+++ +++.+++-+..=-.|+ ...|+..+..+.+ .-+.+.|
T Consensus 494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfee---sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEra 569 (835)
T KOG2047|consen 494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEE---SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERA 569 (835)
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHH---HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 8888888888775433 22221112222233344444 6666666554322233 3345555544433 2346677
Q ss_pred HHHHHHHHhcCCCC
Q 011137 475 KEILRLQSRCGRLP 488 (493)
Q Consensus 475 ~~~~~~~~~~g~~~ 488 (493)
+.+|+...+ |..|
T Consensus 570 RdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 570 RDLFEQALD-GCPP 582 (835)
T ss_pred HHHHHHHHh-cCCH
Confidence 777776666 4444
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.4e-08 Score=81.48 Aligned_cols=196 Identities=13% Similarity=0.008 Sum_probs=115.9
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
.-|.-.|...|+...|..-+++..+..|.+..+|..+...|.+.|+.+.|.+.|++....... +....|.....+|..|
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg 117 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCC
Confidence 344455666666666666666666655556666666666666666666666666666655433 4455666666666666
Q ss_pred CHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 257 QIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 335 (493)
++++|...|++....- ...-..+|..+.-+..+.|+.+.|...|++.++.... ...+...+.....+.|++-.|...+
T Consensus 118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~ 196 (250)
T COG3063 118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYL 196 (250)
T ss_pred ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHH
Confidence 6666666666665542 1223445556666666666666666666666654222 2334455555566666666666666
Q ss_pred HHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 336 EEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 336 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
+.....+. ++.......|+.--..|+.+.+-++=..+..
T Consensus 197 ~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 197 ERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 66655544 5555555555555556666555555444444
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.18 E-value=2e-07 Score=87.44 Aligned_cols=269 Identities=11% Similarity=0.059 Sum_probs=149.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQSL-NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
...+..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|.+.+++.....|.+...+.. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 34555666666667777776666666553221 1121 222223345566788888888888877666666655553 22
Q ss_pred HHHh----cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011137 216 GWCL----VKRTNKALEVLKEMVDRGLNPN-LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 216 ~~~~----~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (493)
.+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.... +...+..+...+...
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~ 161 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQ 161 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHc
Confidence 2222 3444445544443 1122233 334445666777888888888888888877433 566777788888888
Q ss_pred CCHHHHHHHHHHHHHCCCC-CCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHhcCCH
Q 011137 291 GEIKRARNVFDGMVNGGVL-PSV--ATYNAMIQVLCKKDSVENAILVFEEMVGKGY-MPNSTTY-N--VVIRGLCHTGEM 363 (493)
Q Consensus 291 g~~~~A~~~~~~~~~~~~~-~~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~li~~~~~~~~~ 363 (493)
|++++|+..+++....... ++. ..|..+...+...|++++|..++++...... .+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 8888888888887764321 222 2345677778888888888888888754322 1111111 1 222223333433
Q ss_pred HHHHHH--HHHhhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 364 ERALEF--VGRMKDDEC--EPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 364 ~~a~~~--~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..+.++ +........ ............++...|+.++|..+++.+..
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 222222 111111100 11112222455566677777777777776654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.3e-07 Score=79.96 Aligned_cols=406 Identities=11% Similarity=0.085 Sum_probs=242.3
Q ss_pred HHHHHHHHHHHhh--ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH-HH
Q 011137 69 PQLVDQIIKRLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI-IA 145 (493)
Q Consensus 69 ~~~~~~~l~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~ 145 (493)
...+..++.++-+ +...|++....-.+.. +.+....+.+...|....++..|-..|+++-..- |...-|.. -.
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~A 85 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQA 85 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHH
Confidence 3334555555443 3456777776655543 3477788888888899999999999999987754 44444433 35
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD--LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (493)
..+.+.+.+..|+.+...|.+. +....-..-+. .....+++..+..++++.... .+..+.+...-...+.|++
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccH
Confidence 5677788999999998877653 22221111122 234567888888888877642 2555666666677789999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCH--------HHHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE-------------IDV--------VTYTT 282 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------~~~--------~~~~~ 282 (493)
++|.+-|+...+-+---....|+..+ ++.+.|+++.|++...++.++|+. +|+ ..-+.
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa 239 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA 239 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH
Confidence 99999999987654333556777555 455778999999999999999854 111 11222
Q ss_pred HH-------HHHhccCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011137 283 IV-------HGFGVVGEIKRARNVFDGMVNG-GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354 (493)
Q Consensus 283 li-------~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (493)
++ ..+.+.|+++.|.+.+-.|... ....|..|...+.-.- -.+++.+..+-+.-+.+.+. -...||..++
T Consensus 240 l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlL 317 (459)
T KOG4340|consen 240 LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLL 317 (459)
T ss_pred HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHH
Confidence 33 3356778888888888777432 1233555555443221 23445555555555555544 3456888888
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCC
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECE-PNVQTYNILIRYFC-DAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 432 (493)
-.||+..-++.|-+++.+-.....+ .+...|+. ++++. ..-..++|.+-++.+... +.-.......-+.--...++
T Consensus 318 llyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~~-l~~kLRklAi~vQe~r~~~d 395 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAGM-LTEKLRKLAIQVQEARHNRD 395 (459)
T ss_pred HHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhccc
Confidence 8899988888888887664433211 23334443 33333 345667776666555432 00001111111111111222
Q ss_pred cccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCcccc
Q 011137 433 SDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGRLPRQFK 492 (493)
Q Consensus 433 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 492 (493)
-.....|++-+++.++. --.+..+-.+.+++..|+..+.++|+.-.+.....+.|+
T Consensus 396 d~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd~Wk 451 (459)
T KOG4340|consen 396 DEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHDVWK 451 (459)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHhhhcccceee
Confidence 22222344444444432 122333444567889999999999998877766666554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1.1e-06 Score=81.49 Aligned_cols=391 Identities=13% Similarity=0.093 Sum_probs=198.6
Q ss_pred HHHHHHHHHHHh-hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 011137 69 PQLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER 147 (493)
Q Consensus 69 ~~~~~~~l~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (493)
+.++..+-.... ....+|......+.... +.+...+..-+-++.+.+.|++|+.+.+.-... ..+...+-.-..+
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHH
Confidence 444445444333 23567777777776542 567777888788888888888888655442211 1111111222344
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---------------------
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD--------------------- 206 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------- 206 (493)
..+.++.++|+..++-.. +.+..+...-.+.+.+.|++++|.++|+.+.+...++
T Consensus 89 ~Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 556788888888877222 1233455555677888889999999988875431111
Q ss_pred -------cchHHH---HHHHHHhcCChhHHHHHHHHHHhCC-------CCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 011137 207 -------VISYNV---IANGWCLVKRTNKALEVLKEMVDRG-------LNPNL-------TTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 207 -------~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g-------~~p~~-------~~~~~l~~~~~~~g~~~~a~ 262 (493)
..+|.. ..-.+...|++.+|+++++...+.+ -.-+. ..-..+..++...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 112222 2233445677777777776663221 11001 11123344455667777777
Q ss_pred HHHHHHHHCCCCCCHHH----HHHHHHHHhccCCH-H-HHHHHHHH------------HH--------------------
Q 011137 263 RFFLEMKKRKCEIDVVT----YTTIVHGFGVVGEI-K-RARNVFDG------------MV-------------------- 304 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~-~-~A~~~~~~------------~~-------------------- 304 (493)
+++...++.... |... -|.|+.. ....++ + .++..++. +.
T Consensus 245 ~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk 322 (652)
T KOG2376|consen 245 SIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNK 322 (652)
T ss_pred HHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 777766666432 3211 1222211 110000 0 00000000 00
Q ss_pred ---------HC-CCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH-
Q 011137 305 ---------NG-GVLPSVATYNAMIQVLC--KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVG- 371 (493)
Q Consensus 305 ---------~~-~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~- 371 (493)
.. +..| ...+..++..+. +...+.++.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 323 ~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 323 MDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred HHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 00 0011 112222222221 112345555555555544222223344455566667788888888877
Q ss_pred -------HhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC--CCCCC----HHHHHHHHHHHhccCCcccHHH
Q 011137 372 -------RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG--VCLPN----LDTYNILISSMFVRKKSDDLLV 438 (493)
Q Consensus 372 -------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~p~----~~~~~~li~~~~~~~~~~~~~~ 438 (493)
.+.+.+.. +.+...+...+.+.++.+.|..++.+.... .-.+. ..++..++..-.+.|+.++
T Consensus 402 ~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e--- 476 (652)
T KOG2376|consen 402 FLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE--- 476 (652)
T ss_pred HhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH---
Confidence 44433333 345556666677766655555555554331 00111 1223333333345577777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEI 477 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 477 (493)
|..+++++.+.. .+|..+...++.+|+.. +.+.|..+
T Consensus 477 a~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l 513 (652)
T KOG2376|consen 477 ASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESL 513 (652)
T ss_pred HHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHH
Confidence 888888888753 56677777777777664 45555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=6.4e-08 Score=81.86 Aligned_cols=329 Identities=11% Similarity=0.077 Sum_probs=220.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNT-ILDL 182 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-ll~~ 182 (493)
..+.+++.-+.+..++..|++++.....+.. .+......+..+|....++..|-..++++-.. .|...-|.. -.+.
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQS 87 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence 3477788888889999999999988777653 36778888999999999999999999998764 354444432 3456
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcc--hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVI--SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
+.+.+.+.+|+++...|... ++.. ....-.......+++..+..++++....| +..+.+.......+.|++++
T Consensus 88 LY~A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 77889999999998888753 1221 12222223345788888888888776433 45566666666778999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-------------CHH--------------
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP-------------SVA-------------- 313 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------------~~~-------------- 313 (493)
|.+-|+...+-+--.....|+.-+ +..+.|+++.|++...++++.|++. |..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~ 241 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALV 241 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHH
Confidence 999999988764433556676544 5557789999999999999988742 111
Q ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 011137 314 -TYNAMIQVLCKKDSVENAILVFEEMVGK-GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391 (493)
Q Consensus 314 -~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (493)
.+|.-...+.+.|+++.|.+.+.+|.-+ ....|++|...+.-.= ..+++.+..+-+.-+.+.+ +-..+|+..++-.
T Consensus 242 eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLll 319 (459)
T KOG4340|consen 242 EAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLL 319 (459)
T ss_pred HHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHH
Confidence 1222233446788888888888888643 2345667766544221 2455666666666666664 3457789999999
Q ss_pred HHhcCCHHHHHHHHHHHhcCCCC-CCHHHHHHHHHHHhc-cCCcccHHHHHHHHHHHH
Q 011137 392 FCDAGEIERGLELFEKMGSGVCL-PNLDTYNILISSMFV-RKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~-~~~~~~~~~A~~~~~~m~ 447 (493)
||+..-++-|-+++.+-...-.. .+...|+.+ .++.. .-..++ |++-++.+.
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt~qT~pEe---a~KKL~~La 373 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL-DALITCQTAPEE---AFKKLDGLA 373 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH-HHHHhCCCCHHH---HHHHHHHHH
Confidence 99998899888887654432111 234444433 33332 233444 666555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=7.2e-07 Score=94.63 Aligned_cols=335 Identities=9% Similarity=0.035 Sum_probs=210.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC-------C--cchHHHHHHHH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA-------D--VISYNVIANGW 217 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-------~--~~~~~~l~~~~ 217 (493)
.....|+++.+..+++.+.......+..........+...|+++++..++......... . ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 45556777777777665532111112222334445566789999999888776432211 1 11223344556
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHh
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNL----TTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KC-EIDVVTYTTIVHGFG 288 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 288 (493)
...|++++|...+++..+.-...+. ...+.+...+...|++++|...+.+.... |. .....++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 6799999999999988763212121 34456667788899999999999887653 11 111234556677788
Q ss_pred ccCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCC--ChhhHHHHHHHH
Q 011137 289 VVGEIKRARNVFDGMVNG----GVL--P-SVATYNAMIQVLCKKDSVENAILVFEEMVGK--GYMP--NSTTYNVVIRGL 357 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~--~~~~~~~li~~~ 357 (493)
..|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+.... ...+ ....+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 999999999998886542 211 1 2233455566777889999999999877553 1112 233444556677
Q ss_pred HhcCCHHHHHHHHHHhhhC--CCCCCHH--H--HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC---HHHHHHHHHHHh
Q 011137 358 CHTGEMERALEFVGRMKDD--ECEPNVQ--T--YNILIRYFCDAGEIERGLELFEKMGSGVCLPN---LDTYNILISSMF 428 (493)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~--~~~~~~~--~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~ 428 (493)
...|+.++|.+.+...... ....... . ....+..+...|+.+.|...+........... ...+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 8899999999998887543 1111111 1 01122444568999999999877655321111 111345666778
Q ss_pred ccCCcccHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 429 VRKKSDDLLVAGKLLIEMVDR----GFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
..|+.++ |...+++.... |...+ ..+...+..++...|+.++|.+.+....+.
T Consensus 703 ~~g~~~~---A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 703 LLGQFDE---AEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HcCCHHH---HHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8898888 88888887643 33332 235556666889999999999998876654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.1e-09 Score=92.10 Aligned_cols=148 Identities=16% Similarity=0.164 Sum_probs=59.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cC
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK----KD 326 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~ 326 (493)
.+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+.+ +..+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~---eD~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID---EDSILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS---CCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhCch
Confidence 333445555555544321 133344444444555555555555555544421 11222222222221 22
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI-ERGLELF 405 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~ 405 (493)
.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+....+ +-+..+...++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 344555555554333 23344444444444444555555555544444332 22333444444444444443 3344444
Q ss_pred HHHh
Q 011137 406 EKMG 409 (493)
Q Consensus 406 ~~~~ 409 (493)
.++.
T Consensus 260 ~qL~ 263 (290)
T PF04733_consen 260 SQLK 263 (290)
T ss_dssp HHCH
T ss_pred HHHH
Confidence 4443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-05 Score=73.09 Aligned_cols=150 Identities=11% Similarity=0.140 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP-NVQTYNILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 406 (493)
.+....+++++...-..--..+|...++...+..-+..|..+|.++.+.+..+ ++.++++++..||. ++.+-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 45556666666554322234578888888888888999999999999886655 77888889888874 78889999998
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 407 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
--.+. ..-++.--...++-+...++-.. +..+|++.+..++.|+ ...|..++.--..-|+.+.+.++-+.+.
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N---~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNN---ARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchh---HHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 66554 22334444566677777788777 8899999998877766 5789999998888999998888776443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-05 Score=77.21 Aligned_cols=352 Identities=11% Similarity=0.070 Sum_probs=235.2
Q ss_pred HHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC--CC
Q 011137 128 RMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF--KA 205 (493)
Q Consensus 128 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~--~~ 205 (493)
++....+.-+...|..+.-+....|++..+.+.|++....- -.....|+.+...|...|.-..|..+++.-.... ++
T Consensus 313 k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps 391 (799)
T KOG4162|consen 313 KLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPS 391 (799)
T ss_pred HHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCC
Confidence 33334455688899999999999999999999999987643 3456789999999999999999999987655433 44
Q ss_pred CcchHHHHHHHHHh-cCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHH
Q 011137 206 DVISYNVIANGWCL-VKRTNKALEVLKEMVDR--GL--NPNLTTYNIVLKGYFRAG-----------QIEEAWRFFLEMK 269 (493)
Q Consensus 206 ~~~~~~~l~~~~~~-~~~~~~A~~~~~~m~~~--g~--~p~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~ 269 (493)
|...+-.....|.+ .+..++++.+-.+..+. +. ......|..+.-+|...- ...++.+.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 55555555555544 57778888887777652 11 113344555555544321 2456778888887
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---
Q 011137 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK-GYMP--- 345 (493)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~--- 345 (493)
+.+.. |+.+...+.--|+..++++.|.+..++..+.+..-+...|..+.-.+.-.+++.+|+.+.+...+. |...
T Consensus 472 ~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~ 550 (799)
T KOG4162|consen 472 QFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLM 550 (799)
T ss_pred hcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhc
Confidence 76543 333333455567788999999999999998866678899999999999999999999999877654 2100
Q ss_pred ---------------ChhhHHHHHHHHHh---------c--------------CCHHHHHHHHHHhh--------hCC--
Q 011137 346 ---------------NSTTYNVVIRGLCH---------T--------------GEMERALEFVGRMK--------DDE-- 377 (493)
Q Consensus 346 ---------------~~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~~~--------~~~-- 377 (493)
...|...++..+-. . ++..+|.+....+. ..+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 01111122211110 0 01111111111110 001
Q ss_pred -------C--CCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHH
Q 011137 378 -------C--EPN------VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKL 442 (493)
Q Consensus 378 -------~--~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~ 442 (493)
+ .|+ ...|......+.+.++.++|...+.+.... .+-....|......+...|+.++ |.+.
T Consensus 631 ~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~E---A~~a 706 (799)
T KOG4162|consen 631 LKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEE---AKEA 706 (799)
T ss_pred cccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHH---HHHH
Confidence 0 111 123556677788889999999888888764 33456677777778888899998 9999
Q ss_pred HHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHH--HHHHHHhcCCC
Q 011137 443 LIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKE--ILRLQSRCGRL 487 (493)
Q Consensus 443 ~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~g~~ 487 (493)
|..... +.|+ .....++...+.+.|+...|.. ++..+.+.+-.
T Consensus 707 f~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~ 752 (799)
T KOG4162|consen 707 FLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL 752 (799)
T ss_pred HHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC
Confidence 988886 4677 5677788889999998877777 88888877644
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.97 E-value=7.3e-08 Score=85.69 Aligned_cols=250 Identities=15% Similarity=0.140 Sum_probs=162.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
+-+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 33445688888876555 333332234556677888899999877554 4444333 566666655554444334555
Q ss_pred HHHHHHHHhhcC-CC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 191 KAYNLFKVFRGK-FK-ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 191 ~A~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
.+..-++..... .. .+..........+...|++++|+++++.- -+.......+.+|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555443322 22 22333334445667789999998888653 25667777889999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011137 269 KKRKCEIDVVTYTTIVHGFG----VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (493)
.+.+ .| .+...+..++. ..+.+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++.+..+.+..
T Consensus 158 ~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred HhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 8763 23 33444555443 334689999999998765 5578888899999999999999999999998876543
Q ss_pred CChhhHHHHHHHHHhcCCH-HHHHHHHHHhhhC
Q 011137 345 PNSTTYNVVIRGLCHTGEM-ERALEFVGRMKDD 376 (493)
Q Consensus 345 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~ 376 (493)
+..+...++.+....|+. +.+.+++.++...
T Consensus 234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 566777778777788887 6777888888765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.3e-06 Score=77.67 Aligned_cols=370 Identities=14% Similarity=0.106 Sum_probs=227.4
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT-QKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 158 (493)
..+.+.|+..|....... |++...|+.-..+++..|++++|++=-.+-++.. |+ ...|.....++.-.|++++|+
T Consensus 15 ~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~~eA~ 90 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDYEEAI 90 (539)
T ss_pred cccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccHHHHH
Confidence 356788999887765543 4588899999999999999999988666655543 45 468888888899999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHH------HHhhcC----CCCCcchHHHHHHHHHhc--------
Q 011137 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLF------KVFRGK----FKADVISYNVIANGWCLV-------- 220 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~------~~~~~~----~~~~~~~~~~l~~~~~~~-------- 220 (493)
..|.+-++.. +.+...++-+.+++... .. +.+.| ..+... .......|..++..+-+.
T Consensus 91 ~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 91 LAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999988864 45566777777776211 00 01111 111000 000112233333322211
Q ss_pred --CChhHHHHHHHH-----HHhCC-------CCC------------C----------HHHHHHHHHHHHhcCCHHHHHHH
Q 011137 221 --KRTNKALEVLKE-----MVDRG-------LNP------------N----------LTTYNIVLKGYFRAGQIEEAWRF 264 (493)
Q Consensus 221 --~~~~~A~~~~~~-----m~~~g-------~~p------------~----------~~~~~~l~~~~~~~g~~~~a~~~ 264 (493)
.++..+.-.+.. +...| ..| | ..-...+.++..+..+++.+++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 111111111100 00011 111 0 12245677777888888889888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHhcCCHHHHHHHHHH
Q 011137 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA-------MIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-------li~~~~~~~~~~~a~~~~~~ 337 (493)
+....... -+..-++....+|...|.+..+...-+...+.|-. ...-|+. +..+|.+.++++.|...|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 88888775 46666777778888888888777776666555432 2222333 33355667788888888877
Q ss_pred HHhCCCCCChhhH-------------------------HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 011137 338 MVGKGYMPNSTTY-------------------------NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392 (493)
Q Consensus 338 ~~~~~~~~~~~~~-------------------------~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (493)
.......|+...- ..-...+.+.|++..|+..|.+++... +-|...|....-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 6654333322111 111334567788888888888888775 55777888888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011137 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467 (493)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 467 (493)
.+.|++..|+.-.+...+.. ++....|..-..++....+++. |.+.|.+.++. .|+..-+..-+.-|..
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydk---Aleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDK---ALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 88888888888777777751 2234455555555556667777 78888887775 4665555544444444
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-07 Score=86.64 Aligned_cols=254 Identities=10% Similarity=0.037 Sum_probs=191.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
..-+.+.|++.+|.-.|+..++..+. +...|..|.......++-..|+..+.+..+.... +......|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 34456789999999999999988665 7789999999999999999999999999988554 788888899999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHH-hCCCCCChhhHHHHHHHHHhcCCH
Q 011137 294 KRARNVFDGMVNGGVLPSVATYNAMI---------QVLCKKDSVENAILVFEEMV-GKGYMPNSTTYNVVIRGLCHTGEM 363 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~li---------~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~ 363 (493)
..|.+.++..+....+- .|.... ..+..........++|-++. ..+..+|+..+..|.-.|--.|++
T Consensus 370 ~~Al~~L~~Wi~~~p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~ef 446 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEF 446 (579)
T ss_pred HHHHHHHHHHHHhCccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHH
Confidence 99999999987643210 000000 11112223344555554444 445457888888888888889999
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHhccCCcccHHHHHHH
Q 011137 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN-LDTYNILISSMFVRKKSDDLLVAGKL 442 (493)
Q Consensus 364 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~ 442 (493)
++|.+.|+.++... +-|..+||.|...+....+.++|+..|++..+ +.|+ +.+...|.-+|...|.+++ |.+.
T Consensus 447 draiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykE---A~~h 520 (579)
T KOG1125|consen 447 DRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKE---AVKH 520 (579)
T ss_pred HHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHH---HHHH
Confidence 99999999999874 55778999999999999999999999999998 4565 4566667778999999999 8888
Q ss_pred HHHHHH---CC------CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 443 LIEMVD---RG------FMPRKFTFNRVLNGLLLIGNQGLAKEIL 478 (493)
Q Consensus 443 ~~~m~~---~g------~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 478 (493)
|-+.+. ++ -.++...|..|-.++...++.|.+.++.
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 776553 31 1223457888877888888887655443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.4e-06 Score=88.74 Aligned_cols=335 Identities=10% Similarity=0.050 Sum_probs=210.9
Q ss_pred HHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC------CCC--HHHHHHHHHHHH
Q 011137 113 AARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGC------RQS--LNSFNTILDLLC 184 (493)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~ll~~~~ 184 (493)
+...|++..+...++.+.......+..........+...|+++++...+......-- .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 334466666555555542211111222333445556678999999999987754210 111 112223334566
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHh
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADV-----ISYNVIANGWCLVKRTNKALEVLKEMVDR----GL-NPNLTTYNIVLKGYFR 254 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~~~~~l~~~~~~ 254 (493)
..|++++|...++......+... ...+.+...+...|++++|...+++.... |. .....++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 78999999999987654322211 24566677788899999999999888642 11 1112355667778889
Q ss_pred cCCHHHHHHHHHHHHHC----CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHH
Q 011137 255 AGQIEEAWRFFLEMKKR----KCE---IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG--GVLP--SVATYNAMIQVLC 323 (493)
Q Consensus 255 ~g~~~~a~~~~~~~~~~----~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~--~~~~~~~li~~~~ 323 (493)
.|++++|...+++.... +.. .....+..+...+...|++++|...+.+.... ...+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998876553 211 12334455666778889999999999887553 1112 2334455666788
Q ss_pred hcCCHHHHHHHHHHHHhCCCC-CChhhH-----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHh
Q 011137 324 KKDSVENAILVFEEMVGKGYM-PNSTTY-----NVVIRGLCHTGEMERALEFVGRMKDDECEPN---VQTYNILIRYFCD 394 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~-----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 394 (493)
..|+.++|...++........ .....+ ...+..+...|+.+.|.+++........... ...+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999999999887542110 011111 1122444568999999999877654321111 1124567778889
Q ss_pred cCCHHHHHHHHHHHhcC----CCCCC-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC
Q 011137 395 AGEIERGLELFEKMGSG----VCLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 395 ~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g 450 (493)
.|+.++|...+++.... |...+ ..+...+..++...|+.++ |...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~---A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSE---AQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHHh
Confidence 99999999999887653 22222 3456666778889999988 999999988753
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2e-05 Score=73.45 Aligned_cols=364 Identities=12% Similarity=0.143 Sum_probs=215.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 187 (493)
+=++.+...|++++|.+...++...+ +.+...+..-+-++++.+++++|+.+.+.-... ..+...+-.-..+..+.+
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln 93 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN 93 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence 34566778899999999999999876 567788888899999999999999665443211 111111112234455789
Q ss_pred CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-C-------------------------
Q 011137 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP-N------------------------- 241 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~------------------------- 241 (493)
..++|+..++-.. +.+..+...-...+.+.|++++|+++|+.+.+.+..- +
T Consensus 94 k~Dealk~~~~~~---~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 94 KLDEALKTLKGLD---RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred cHHHHHHHHhccc---ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 9999998887322 2344577777888999999999999999998765321 0
Q ss_pred -HHHHHHH---HHHHHhcCCHHHHHHHHHHHHHCC-------CCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 242 -LTTYNIV---LKGYFRAGQIEEAWRFFLEMKKRK-------CEIDV-------VTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 242 -~~~~~~l---~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
..+|..+ ...+...|++.+|+++++...+.+ -.-+. ..-..|...+-..|+.++|..+|...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 1122222 233556788888888888773321 11111 11223445567788888888888888
Q ss_pred HHCCCCCCHHH----HHHHHHHHHhcCCH----------------HHHHHHH-------------------------HHH
Q 011137 304 VNGGVLPSVAT----YNAMIQVLCKKDSV----------------ENAILVF-------------------------EEM 338 (493)
Q Consensus 304 ~~~~~~~~~~~----~~~li~~~~~~~~~----------------~~a~~~~-------------------------~~~ 338 (493)
++.... |... -|.++..-....-+ +.+..-+ ++.
T Consensus 251 i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 876442 3311 11121110000000 0000000 000
Q ss_pred HhC--CCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------
Q 011137 339 VGK--GYMPNSTTYNVVIRGLCH--TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFE-------- 406 (493)
Q Consensus 339 ~~~--~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-------- 406 (493)
... +..|. ..+..++..+.+ ......+..++...-+....-...+.-.+++.....|+++.|.+++.
T Consensus 330 ~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~s 408 (652)
T KOG2376|consen 330 SASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKS 408 (652)
T ss_pred HHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhh
Confidence 000 11122 233344433322 22456666666666554322234556667778889999999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC--CCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHH
Q 011137 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR--GFMPRKFTFNRVLN----GLLLIGNQGLAKEILRL 480 (493)
Q Consensus 407 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~----~~~~~g~~~~a~~~~~~ 480 (493)
.+.+.+. .+.+...++..+.+.++.+. |..++.+.+.. .-.+.......++. --.+.|+.++|..+++.
T Consensus 409 s~~~~~~--~P~~V~aiv~l~~~~~~~~~---a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~lee 483 (652)
T KOG2376|consen 409 SILEAKH--LPGTVGAIVALYYKIKDNDS---ASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEE 483 (652)
T ss_pred hhhhhcc--ChhHHHHHHHHHHhccCCcc---HHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHH
Confidence 5544333 34455566667777777777 66777766532 11222233333333 34567999999999999
Q ss_pred HHhc
Q 011137 481 QSRC 484 (493)
Q Consensus 481 ~~~~ 484 (493)
+.+.
T Consensus 484 l~k~ 487 (652)
T KOG2376|consen 484 LVKF 487 (652)
T ss_pred HHHh
Confidence 8884
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.95 E-value=8.5e-06 Score=71.02 Aligned_cols=201 Identities=11% Similarity=0.071 Sum_probs=114.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCCCH-HHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG-------QIEEAWRFFLEMKKRKCEIDV-VTYT 281 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~-~~~~ 281 (493)
-..|+-.|.+.+++.+|..+.+++.- . ++.-|-.-.-.++..| ...-|.+.|+..-..+..-|. .--.
T Consensus 288 RlNL~iYyL~q~dVqeA~~L~Kdl~P--t--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQ 363 (557)
T KOG3785|consen 288 RLNLIIYYLNQNDVQEAISLCKDLDP--T--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQ 363 (557)
T ss_pred hhhheeeecccccHHHHHHHHhhcCC--C--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchH
Confidence 34455567777888888777666531 1 2222221111222222 244566666655554433232 2234
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhc
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN-VVIRGLCHT 360 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~ 360 (493)
.+..++.-..++++++-.++.+..--.. |...--.+.++++..|.+.+|+++|-.+....++ |..+|. .+.++|.+.
T Consensus 364 smAs~fFL~~qFddVl~YlnSi~sYF~N-dD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 364 SMASYFFLSFQFDDVLTYLNSIESYFTN-DDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhc
Confidence 4555566666777777777766654222 3333334677888888888888888766655444 444544 455677788
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 011137 361 GEMERALEFVGRMKDDECEPNVQT-YNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421 (493)
Q Consensus 361 ~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 421 (493)
+.++.|++++-.+... .+..+ ...+..-|.+++++--|-+.|+.+... .|++..|.
T Consensus 442 kkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred CCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 8888887776555432 22222 334456667777777777777777663 46666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.4e-06 Score=78.70 Aligned_cols=213 Identities=9% Similarity=0.035 Sum_probs=144.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG-KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
..+-.++...+..++|+.+.+++....+ -+..+|......+...| ++++++..++++.+.. +.+..+|+....++.+
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~lnP-~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~ 118 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLNP-GNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEK 118 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHH
Confidence 3333445556778888888888887653 34556666666666666 5788898888888764 4556677766656666
Q ss_pred cCCH--HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCH--
Q 011137 186 EKKV--EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA---GQI-- 258 (493)
Q Consensus 186 ~g~~--~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~-- 258 (493)
.|+. +++..+++.+.+..+.|..+|+....++...|+++++++.++++++.++. |..+|+....++.+. |..
T Consensus 119 l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 119 LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 6653 66777787777777778888888888888888899999999999887766 666777666665554 222
Q ss_pred --HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 011137 259 --EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV----GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK 324 (493)
Q Consensus 259 --~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~ 324 (493)
++......+++...+. |...|+.+...+... +...+|.+.+.+..+.++ .+......|+..|+.
T Consensus 198 ~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 4566666666665433 677777777777662 334557777777665432 355666667777764
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-06 Score=76.67 Aligned_cols=206 Identities=9% Similarity=0.030 Sum_probs=146.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh--hH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK-KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT--NK 225 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~ 225 (493)
...++.++|+.+++++++.. +.+..+|+....++...| ++++++..++++....+.+..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 34567889999999988754 345567777777777777 578999999988887777888888777777677763 67
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC----HHHHHH
Q 011137 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV---GE----IKRARN 298 (493)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A~~ 298 (493)
++.+++++.+...+ +..+|+...-++.+.|+++++++.++++++.++. +..+|+.....+.+. |. .+.+++
T Consensus 127 el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 127 ELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred HHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHH
Confidence 88888888877665 7788888888888889999999999999888665 667777766665544 22 245666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011137 299 VFDGMVNGGVLPSVATYNAMIQVLCKK----DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 359 (493)
...+++.... -|...|+.+...+... +...+|...+.+....++ .+...+..|+..|+.
T Consensus 205 y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 205 YTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 6666666533 3667777777777662 334556666666655432 255566666666664
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.6e-06 Score=88.05 Aligned_cols=221 Identities=14% Similarity=0.136 Sum_probs=101.1
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCCC---HHHHHHHHHHHHHcCCHHHHH
Q 011137 83 ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL-SLGPT---QKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~ 158 (493)
+..|-+|-+.++..|+ +...|-.-|......++.+.|.++.++.... ++.-. ...|.++++.-..-|.-+...
T Consensus 1441 pesaeDferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CcCHHHHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 3344444444444432 4445555555555555555555555554432 11111 123444444444444445555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
++|+++.+.. ..-.+|..|...|.+.+.+++|.++|+.|.+++.-....|...+..+.+..+-+.|..++.+..+.=.
T Consensus 1518 kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1518 KVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 5555555431 22234445555555555555555555555544444444555555555555555555555555443211
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 011137 239 NP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309 (493)
Q Consensus 239 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 309 (493)
+- ........+..-.+.|+.+.+..+|+...... +--...|+..++.-.+.|+.+.++.+|+++...+..
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence 10 01112222233334455555555555544442 223444555555555555555555555555544443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.88 E-value=3.8e-05 Score=66.84 Aligned_cols=302 Identities=11% Similarity=0.028 Sum_probs=197.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF-NTIL 180 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 180 (493)
++.-.--+-..+...|++..|+.-|+.....++ .+-.++-.-...|...|+-..|+.=+...++. +||...- ..-.
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp-~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg 113 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDP-NNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG 113 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCc-hhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence 334444556667777888888888877766421 11223333344577777777777777777763 4554321 1123
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCc---ch------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADV---IS------------YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTY 245 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~------------~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 245 (493)
..+.+.|.++.|..-|+.+.+..+.+. .. ....+..+.-.|+...|++....+++..+= |...|
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~ 192 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLR 192 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHH
Confidence 356778888888888877765432111 11 122344556678888888888888775332 66677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH----HHH---H
Q 011137 246 NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT----YNA---M 318 (493)
Q Consensus 246 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~---l 318 (493)
..-..+|...|++..|+.-++..-+.... +..++.-+-..+...|+.+.++...++.++. .||... |.. +
T Consensus 193 ~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv 269 (504)
T KOG0624|consen 193 QARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKV 269 (504)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHH
Confidence 77788888888888888777777665433 5556666777788888888888888887764 344322 111 1
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHhCCCCCChh---hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 011137 319 ------IQVLCKKDSVENAILVFEEMVGKGYMPNST---TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389 (493)
Q Consensus 319 ------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 389 (493)
+......++|.++.+..+...+........ .+..+-.++...+++.+|++...++.+.. +.|..++.--.
T Consensus 270 ~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRA 348 (504)
T KOG0624|consen 270 VKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHH
Confidence 122345678888888888877764432222 33445556667888999999999888763 44588888888
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC
Q 011137 390 RYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
.+|.-...++.|+.-|+...+.
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhc
Confidence 8998888999999999988875
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.2e-05 Score=67.25 Aligned_cols=302 Identities=11% Similarity=0.074 Sum_probs=213.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcc-hHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI-SYNVIAN 215 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~ 215 (493)
++.-..-+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+-..|+.-+.++.+. +||-. +----..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc-CccHHHHHHHhch
Confidence 34445556777888999999999998887643 222223333345677788888787777766653 44433 2233345
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCC--HHH------------HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPN--LTT------------YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~------------~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 281 (493)
.+.+.|.++.|..-|+..++....-+ ... ....+..+.-.|+...|+.....+.+. .+-|...|.
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi-~~Wda~l~~ 193 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI-QPWDASLRQ 193 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc-CcchhHHHH
Confidence 67899999999999999987643211 111 223345566789999999999999887 345888899
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh----hHHHH----
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST----TYNVV---- 353 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l---- 353 (493)
.-..+|...|++..|+.-++...+... -++.++..+-..+...|+.+.++...++..+. .||.. .|..+
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHH
Confidence 999999999999999988888766533 36677777888899999999999999998876 34432 12211
Q ss_pred -----HHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-HHHHHHHH
Q 011137 354 -----IRGLCHTGEMERALEFVGRMKDDECEPN---VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN-LDTYNILI 424 (493)
Q Consensus 354 -----i~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li 424 (493)
+....+.++|.++++..+...+...... ...+..+-.++...|++.+|++.-.+..+ +.|| ..++.--.
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHH
Confidence 1223456778888888888776632211 22344556667778899999999998887 4454 77888788
Q ss_pred HHHhccCCcccHHHHHHHHHHHHHC
Q 011137 425 SSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 425 ~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
.+|.-...+++ |+.-|+...+.
T Consensus 349 eA~l~dE~YD~---AI~dye~A~e~ 370 (504)
T KOG0624|consen 349 EAYLGDEMYDD---AIHDYEKALEL 370 (504)
T ss_pred HHHhhhHHHHH---HHHHHHHHHhc
Confidence 88888888888 88888888875
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.4e-06 Score=86.86 Aligned_cols=227 Identities=15% Similarity=0.138 Sum_probs=152.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCE---IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN 316 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 316 (493)
+...|-..|......++.++|.++.++.+.. ++. --...|.++++.-...|.-+...++|+++.+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3456666677777777888888888777664 111 113356666666666677777788888877641 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCHHHHHHHHHHHHhc
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-EPNVQTYNILIRYFCDA 395 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 395 (493)
.|...|.+.+.+++|-++++.|.++ +.-....|...+..+.+.++-+.|..++.++.+.-. .-......-.++.-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 7778888888888888888888776 223566777778888888887888888887776511 11344455566666677
Q ss_pred CCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHH
Q 011137 396 GEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGL 473 (493)
Q Consensus 396 g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~ 473 (493)
|+.+.+..+|+..... .+--...|+.+|+.=.++|+.+. +..+|++.+..++.|. ...|...+..--..|+-+.
T Consensus 1614 GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~---vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKY---VRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred CCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHH---HHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 8888888888877664 23356778888888888887777 7788888888777766 3455555554444565544
Q ss_pred H
Q 011137 474 A 474 (493)
Q Consensus 474 a 474 (493)
+
T Consensus 1690 v 1690 (1710)
T KOG1070|consen 1690 V 1690 (1710)
T ss_pred H
Confidence 3
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.9e-05 Score=72.76 Aligned_cols=363 Identities=11% Similarity=0.044 Sum_probs=242.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS-LNSFNTILDLLCKEKKV 189 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~ 189 (493)
.+....|+++.|+..|-+.....+ ++...|..-..+|...|++++|++=-.+-.+. .|+ ...|.-...++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence 456778999999999999988866 48888999999999999999998876666654 344 56788899999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH---HHHHHHHhC---CCCCCHHHHHHHHHHHHhc-------C
Q 011137 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL---EVLKEMVDR---GLNPNLTTYNIVLKGYFRA-------G 256 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~---~~~~~m~~~---g~~p~~~~~~~l~~~~~~~-------g 256 (493)
++|+..|.+-.+..+.+...++.+..++.......+.. .++..+... ........|..++..+-+. .
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 99999999988877888888888888872211110000 011111100 0000112233333322111 0
Q ss_pred CHHHHHHHHHHHHHC--------C-------CCC----------------------CHHHHHHHHHHHhccCCHHHHHHH
Q 011137 257 QIEEAWRFFLEMKKR--------K-------CEI----------------------DVVTYTTIVHGFGVVGEIKRARNV 299 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~--------~-------~~~----------------------~~~~~~~li~~~~~~g~~~~A~~~ 299 (493)
+.+...+....+... + ..| -..-...+.++..+..+++.|++-
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 111111111111100 0 011 112244566777788889999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhcCCHHHHHHHHHH
Q 011137 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV-------IRGLCHTGEMERALEFVGR 372 (493)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~ 372 (493)
+....+.. -+..-++....+|...|.+.++...-....+.|-. ....|+.+ ..+|.+.++++.|+..|.+
T Consensus 247 y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~k 323 (539)
T KOG0548|consen 247 YAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQK 323 (539)
T ss_pred HHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHH
Confidence 99888764 35666677788899999988888887777766543 22333333 3356667889999999988
Q ss_pred hhhCCCCCCHHHH-------------------------HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 373 MKDDECEPNVQTY-------------------------NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 373 ~~~~~~~~~~~~~-------------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
.......|+...- ..=...+.+.|++..|...|.+++... +-|...|..-.-+|
T Consensus 324 aLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 324 ALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACY 402 (539)
T ss_pred HhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHH
Confidence 7765444443221 112445668899999999999998874 45788999999999
Q ss_pred hccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 428 FVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
.+.|.+.. |++-.+..++. .|+ ...|..-..++....+++.|.+.+.+..++.
T Consensus 403 ~kL~~~~~---aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 403 LKLGEYPE---ALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHhhHHH---HHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999998 88888887775 444 4455555557777888999998888877764
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.4e-07 Score=82.16 Aligned_cols=249 Identities=12% Similarity=0.064 Sum_probs=188.2
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
.-+.+.|++.+|.-.|+......|.+...|..|.......++-..|+..+++..+.... +......|.-.|...|.-.+
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHH
Confidence 34678899999999999888888889999999999999999999999999999987554 67788888889999999999
Q ss_pred HHHHHHHHHHCCCC--------CCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 261 AWRFFLEMKKRKCE--------IDVVTYTTIVHGFGVVGEIKRARNVFDGMV-NGGVLPSVATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 261 a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (493)
|.+.++..+...++ .+...-.. ..+.....+....++|-++. ..+..+|..+...|.-.|.-.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988665321 00000000 12222233455566666654 445457888899999999999999999
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN-VQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
...|+..+..... |...||.|...++...+.++|+..|+++++. .|+ +.+...|.-.|...|.+++|.+.|-..+.
T Consensus 450 iDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 9999999987533 7789999999999999999999999999986 454 44566788889999999999998876643
Q ss_pred C---------CCCCCHHHHHHHHHHHhccCCccc
Q 011137 411 G---------VCLPNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 411 ~---------~~~p~~~~~~~li~~~~~~~~~~~ 435 (493)
. +..++...|..|=.++...++.|-
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~ 560 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDL 560 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchH
Confidence 2 111234566666555555555553
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00012 Score=72.67 Aligned_cols=244 Identities=14% Similarity=0.133 Sum_probs=143.2
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (493)
....|..+..+-.+.|.+.+|++-|-+.. |+..|..+++...+.|.+++-.+++...++..-+|... +.|+-
T Consensus 1103 ~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence 34567777777777777777776665442 66677888888888888888888777777665554443 45777
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 365 (493)
+|++.+++.+-++++. .|+......+.+-|...|.++.|.-+|... ..|..+...+...|++..
T Consensus 1175 AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred HHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHH
Confidence 7777777766555442 245555555555555555555555554322 223333333344444433
Q ss_pred HHHHHH------------------------HhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHH
Q 011137 366 ALEFVG------------------------RMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYN 421 (493)
Q Consensus 366 a~~~~~------------------------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 421 (493)
|.+.-+ +|...++-....-..-|+..|...|-+++.+.+++..... -......|+
T Consensus 1239 AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfT 1317 (1666)
T KOG0985|consen 1239 AVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFT 1317 (1666)
T ss_pred HHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHH
Confidence 333222 2222233334455667777787888888877777765442 123455677
Q ss_pred HHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 422 ILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 422 ~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
.|.-.|.+- +++. ..+.++-.-. +...-.+++++-.+.-|.+..-++..+.++
T Consensus 1318 ELaiLYsky-kp~k---m~EHl~LFws------RvNipKviRA~eqahlW~ElvfLY~~y~ey 1370 (1666)
T KOG0985|consen 1318 ELAILYSKY-KPEK---MMEHLKLFWS------RVNIPKVIRAAEQAHLWSELVFLYDKYEEY 1370 (1666)
T ss_pred HHHHHHHhc-CHHH---HHHHHHHHHH------hcchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 776666554 3344 2233322222 222345678888888888887777666554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.9e-06 Score=69.24 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=83.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 011137 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308 (493)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 308 (493)
+.+.+.......+......-...|++.|++++|++...... +......=+..+.+..+++-|.+.+++|.+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i-- 166 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI-- 166 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--
Confidence 33444444333333333444455666666777666655411 2233333344455556666666666666653
Q ss_pred CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHH
Q 011137 309 LPSVATYNAMIQVLCK----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQT 384 (493)
Q Consensus 309 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 384 (493)
-+..+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++...... ..++.+
T Consensus 167 -ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpet 243 (299)
T KOG3081|consen 167 -DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPET 243 (299)
T ss_pred -chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHH
Confidence 244455555555543 34466666666666553 34555666666666666666666666666666553 224444
Q ss_pred HHHHHHHHHhcCC
Q 011137 385 YNILIRYFCDAGE 397 (493)
Q Consensus 385 ~~~l~~~~~~~g~ 397 (493)
...++.+-...|.
T Consensus 244 L~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 244 LANLIVLALHLGK 256 (299)
T ss_pred HHHHHHHHHHhCC
Confidence 4444444444443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.81 E-value=8.6e-05 Score=73.58 Aligned_cols=321 Identities=11% Similarity=0.125 Sum_probs=214.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSL--GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (493)
..|++..+..+.++...+-+.+..++++++.-.+- ..+...-+.++-...+ -+..+..+..+++...+. |+
T Consensus 981 ~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa-~~----- 1053 (1666)
T KOG0985|consen 981 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDA-PD----- 1053 (1666)
T ss_pred cCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCc-hh-----
Confidence 34777888888888899999999999988764432 1222333444443333 345566677776665432 22
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 257 (493)
+.......+-+++|..+|+...- +..+.+.|+.- -+..+.|.++-++.- ....|..+..+-.+.|.
T Consensus 1054 -ia~iai~~~LyEEAF~ifkkf~~----n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~ 1119 (1666)
T KOG0985|consen 1054 -IAEIAIENQLYEEAFAIFKKFDM----NVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGL 1119 (1666)
T ss_pred -HHHHHhhhhHHHHHHHHHHHhcc----cHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCc
Confidence 33445667778899888887543 55566666653 466777776665543 45678999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
..+|++-|-+. -|+..|..+++...+.|.+++-.+.+....++.-.|... +.||-+|++.++..+.++.+.
T Consensus 1120 v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~- 1190 (1666)
T KOG0985|consen 1120 VKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFIA- 1190 (1666)
T ss_pred hHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHhc-
Confidence 99888776432 277889999999999999999999988887776555543 578889999998877665542
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCH
Q 011137 338 MVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNL 417 (493)
Q Consensus 338 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~ 417 (493)
.|+......+..-|...|.++.|.-+|... ..|..|...+...|++..|.+.-++.. +.
T Consensus 1191 ------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ 1249 (1666)
T KOG0985|consen 1191 ------GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN------ST 1249 (1666)
T ss_pred ------CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc------ch
Confidence 467777788888888888888887777543 346677777778888887776655543 45
Q ss_pred HHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 418 DTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 418 ~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
.+|..+-.+|...+.+.- .+|....+.....-+..++..|...|-+++...+++
T Consensus 1250 ktWK~VcfaCvd~~EFrl--------AQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~E 1303 (1666)
T KOG0985|consen 1250 KTWKEVCFACVDKEEFRL--------AQICGLNIIVHADELEELIEYYQDRGYFEELISLLE 1303 (1666)
T ss_pred hHHHHHHHHHhchhhhhH--------HHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHH
Confidence 677777666665443322 223333333444445555555555555555555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.80 E-value=8.4e-07 Score=84.35 Aligned_cols=205 Identities=11% Similarity=0.044 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+-.+ -+|+...|..+.+....
T Consensus 401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d 469 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHD 469 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccC
Confidence 3344444445555555555554432 233344455555555555555444443 23445555555554444
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
..-+++|.++.+..... +-..+.....+.++++++.+.|+.-.+.+. ....+|-.+..+..+.+++..|.+.
T Consensus 470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av~a 541 (777)
T KOG1128|consen 470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAVKA 541 (777)
T ss_pred hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHHHH
Confidence 44455555554443221 111111112234455555555544443321 1233444444444455555555555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCccc
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 435 (493)
|....... +-+...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+......|.+++
T Consensus 542 F~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~ed 605 (777)
T KOG1128|consen 542 FHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFED 605 (777)
T ss_pred HHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHH
Confidence 55544432 2234445555555555555555555555555443 2233344444444445555555
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.8e-06 Score=83.81 Aligned_cols=239 Identities=10% Similarity=0.066 Sum_probs=161.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
.+...+..|+..+...+++++|.++.+...+.. +.....|-.+...+...++..++.-+ .++.
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~ 91 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL----------------NLID 91 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh----------------hhhh
Confidence 356788888888888999999999888766642 33334444444466777776665444 2222
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
......++.-+..+...|.+.+ -+...+..+..+|-+.|+.+++..+++++.+... -|+.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHH
Confidence 2333334433334444444432 2445778888999999999999999999998874 4888899999999888 9999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
|++++.+.... |...+++.++.++|.++....+. +++.-.++.+.+..
T Consensus 168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~-----------------d~d~f~~i~~ki~~ 215 (906)
T PRK14720 168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSD-----------------DFDFFLRIERKVLG 215 (906)
T ss_pred HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcc-----------------cchHHHHHHHHHHh
Confidence 99988887653 56677888888888888876322 22222333333333
Q ss_pred C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 376 D-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 376 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
. +..--..++-.+-..|-..++++++..+++.+.+.. +-|.....-++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2 223345566777788888888999999999988863 236666777777776
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.80 E-value=6.9e-06 Score=78.27 Aligned_cols=110 Identities=17% Similarity=0.224 Sum_probs=70.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 327 (493)
.+.+......+.+|+.+++.+..... -...|..+.+.|...|+++.|+++|.+.- .++-.|..|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34555566777788888777776643 23456677777888888888888775432 24556777888888
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 370 (493)
|+.|.++-.+... .......|-+-..-+-+.|++.+|.++|
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqly 847 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLY 847 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhhee
Confidence 8888777665543 2334445555555556666666666655
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.5e-06 Score=79.58 Aligned_cols=288 Identities=14% Similarity=0.074 Sum_probs=194.8
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH---hhC------------------CCCCCHHHHHHH
Q 011137 86 ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRM---KSL------------------SLGPTQKTFAII 144 (493)
Q Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~---~~~------------------~~~~~~~~~~~l 144 (493)
-..+++.+..+.+..-.......+.+.....++.....+-+.+| ... +.+|--..-..+
T Consensus 325 l~p~~~~iL~q~~~~w~i~~salllr~~~E~~~~RtveR~~~q~q~lv~~iq~~e~~v~nRlsy~ya~~lpp~Wq~q~~l 404 (777)
T KOG1128|consen 325 LEPLTSTLLSQTEKYWSIQASALLLRFLLESTRSRTVERALSQMQFLVKAIQMKEYSVLNRLSYIYAPHLPPIWQLQRLL 404 (777)
T ss_pred HHHHHHHHhhccCCceeeehHHHHHHHHHHhcCccchhhHHHHHHHHHHHHhhccHhHHhcccccccCCCCCcchHHHHH
Confidence 34466666666544445555666666666655544333333222 110 122333344456
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
...+...|-...|+.+|+++. .|.-++.+|+..|+..+|..+..+-.+ .+|+...|..+.+......-++
T Consensus 405 aell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 405 AELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred HHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHH
Confidence 677888888888888888764 466678888888988888888776655 5778888888888877777778
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
+|.++.+....+ +-..+.....+.++++++.+.|+.-.+.+ +.-..+|-.+..+..+.++++.|.+.|....
T Consensus 475 kawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcv 546 (777)
T KOG1128|consen 475 KAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCV 546 (777)
T ss_pred HHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHh
Confidence 888777765322 22223333345788888888888777663 2356778888888888899999999998887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHH
Q 011137 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQ 383 (493)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 383 (493)
... +-+...||.+-.+|.+.++-.+|...+.+..+.+.. +...|-..+-...+.|.+++|.+.+.++.... ...|..
T Consensus 547 tL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~ 624 (777)
T KOG1128|consen 547 TLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDE 624 (777)
T ss_pred hcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccch
Confidence 742 235668999999999999999999999998888743 45566666667788899999999988886641 122444
Q ss_pred HHHHHHHHHH
Q 011137 384 TYNILIRYFC 393 (493)
Q Consensus 384 ~~~~l~~~~~ 393 (493)
+...++....
T Consensus 625 vl~~iv~~~~ 634 (777)
T KOG1128|consen 625 VLLIIVRTVL 634 (777)
T ss_pred hhHHHHHHHH
Confidence 5444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.4e-06 Score=74.83 Aligned_cols=59 Identities=12% Similarity=0.024 Sum_probs=32.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGV--LPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+...|.+.|++++|+..+++..+... +.....+..+..++.+.|++++|..+++.+...
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44455566666666666666555321 112345556666666666666666666555543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.4e-06 Score=74.85 Aligned_cols=60 Identities=13% Similarity=0.108 Sum_probs=47.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGY--MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
.+...|.+.|++++|...++...+... +.....+..+..++...|++++|..+++.+...
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456678889999999999998887632 123567888889999999999999988888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-05 Score=72.20 Aligned_cols=209 Identities=14% Similarity=0.151 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-C-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSL-S-------LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL 173 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 173 (493)
+...|..+.+.|.+.++.+-|.-.+-.|... | ...+..+-..+.-.....|..++|+.+|++-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 4568999999999998888887777666432 1 1111133333444456788999999999887763
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH----------HhCCC-----
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM----------VDRGL----- 238 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m----------~~~g~----- 238 (493)
..|-..|-..|.+++|.++-+.=.. +. -..||.....-+...++.+.|++.|++. ....+
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DR-iH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~ 904 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDR-IH-LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQ 904 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccc-ee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHH
Confidence 3344567778999999877653221 11 1236667777777788888888888763 21111
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHH
Q 011137 239 ----NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVAT 314 (493)
Q Consensus 239 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 314 (493)
..|...|......+-..|+.+.|+.+|...+. |-.+++..|-.|+.++|-++-++- -|...
T Consensus 905 Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AA 969 (1416)
T KOG3617|consen 905 YVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAA 969 (1416)
T ss_pred HHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHH
Confidence 12445555566666677888888887776544 233444444445555544443331 13333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 011137 315 YNAMIQVLCKKDSVENAILVFE 336 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~ 336 (493)
...+.+.|-..|++.+|...|.
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHH
Confidence 3444445555555555544443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-06 Score=70.93 Aligned_cols=158 Identities=13% Similarity=0.130 Sum_probs=93.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC
Q 011137 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221 (493)
Q Consensus 142 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (493)
...-..+...|+-+....+....... .+.|....+.++....+.|++..|...|.+.....++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 44445555556655555555543322 13344455556666666666666666666666666666666666666666666
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 222 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+.. |..+-..+.......|++++|.++..
T Consensus 149 r~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 149 RFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhcc
Confidence 666666666666654332 4455566666666666666666666666555332 55555556666666666666666654
Q ss_pred H
Q 011137 302 G 302 (493)
Q Consensus 302 ~ 302 (493)
.
T Consensus 227 ~ 227 (257)
T COG5010 227 Q 227 (257)
T ss_pred c
Confidence 4
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2e-05 Score=76.25 Aligned_cols=241 Identities=17% Similarity=0.211 Sum_probs=170.4
Q ss_pred CCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-C--------C
Q 011137 101 HSPSSFDHAID--LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-G--------C 169 (493)
Q Consensus 101 ~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--------~ 169 (493)
.|..+-..+++ .|...|+.+.|.+-.+.++ +..+|..+.+.|.+..+.|-|.-.+..|... | -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 46777777765 5677899999988877765 4568999999999999998887777666421 1 0
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVL 249 (493)
Q Consensus 170 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 249 (493)
.++ ..-..+.......|.+++|..+|.+-+. |..|=+.|...|.+++|+++-+.=-+..++ .||..-.
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 121 2222233345677999999999987553 456667788899999999887654333222 4566666
Q ss_pred HHHHhcCCHHHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC
Q 011137 250 KGYFRAGQIEEAWRFFLEM----------KKRK---------CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP 310 (493)
Q Consensus 250 ~~~~~~g~~~~a~~~~~~~----------~~~~---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 310 (493)
..+-..++.+.|++.|++. .... -..|...|.-....+...|+.+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 6666778888888887652 2211 123555666666677788888888888876654
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 311 SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 311 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
|-.+++..|-.|+.++|-.+-++-- |......+.+.|...|++.+|..+|.++.
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5667788888899999988776532 55566678889999999999999988765
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=4.9e-06 Score=69.91 Aligned_cols=119 Identities=8% Similarity=0.097 Sum_probs=72.1
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY-FRAGQ--IEEAW 262 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~--~~~a~ 262 (493)
.++.+++...++......+.|...|..+...|...|++++|...|++..+.... +...+..+..++ ...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 445555555555555555566666666666666666666666666666665433 455555555543 44455 36666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
+++++..+.+.. +..++..+...+.+.|++++|+..|+++.+.
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 666666666443 5566666666666666666666666666654
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.7e-06 Score=69.50 Aligned_cols=150 Identities=9% Similarity=0.102 Sum_probs=112.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 189 (493)
+..|...|+++.+....+.+... . ..+...++.++++..++...+.+ +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----L--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----c--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 45677788877764444322211 0 01223566677777777777654 67788899999999999999
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHH-HhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 190 EKAYNLFKVFRGKFKADVISYNVIANGW-CLVKR--TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFL 266 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 266 (493)
++|...|++.....+.+...+..+..++ ...|+ .++|.+++++..+.+.. +..++..+...+.+.|++++|+..|+
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999888877777888888888864 66677 48999999999887665 77788888888999999999999999
Q ss_pred HHHHCCC
Q 011137 267 EMKKRKC 273 (493)
Q Consensus 267 ~~~~~~~ 273 (493)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9888743
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.4e-06 Score=69.08 Aligned_cols=164 Identities=9% Similarity=0.069 Sum_probs=116.9
Q ss_pred CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG 251 (493)
Q Consensus 172 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 251 (493)
|..+ ..+-..+.-.|+-+.+..+........+.|......++....+.|++.+|...+.+..... .+|..+|+.+.-+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaa 143 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAA 143 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHH
Confidence 3444 4455566667777777776666555555566666667788888888888888888887654 3477888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (493)
|.+.|++++|..-|.+..+.... +...++.|.-.|.-.|+.+.|..++......+. -|...-..+..+....|++++|
T Consensus 144 ldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 144 LDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred HHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHH
Confidence 88888888888888887776433 666777777777788888888888877776533 2666666777777778888888
Q ss_pred HHHHHHHH
Q 011137 332 ILVFEEMV 339 (493)
Q Consensus 332 ~~~~~~~~ 339 (493)
..+...-.
T Consensus 222 ~~i~~~e~ 229 (257)
T COG5010 222 EDIAVQEL 229 (257)
T ss_pred Hhhccccc
Confidence 77765443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.5e-08 Score=55.76 Aligned_cols=32 Identities=44% Similarity=0.954 Sum_probs=16.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 237 GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 237 g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=9.3e-05 Score=73.32 Aligned_cols=384 Identities=11% Similarity=-0.018 Sum_probs=229.0
Q ss_pred ChHHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 82 HALKALHFFNILS-YHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 82 ~~~~A~~~~~~~~-~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
+...|++.|-... ..+. -...|..+...|....+...|...|+..-+... .+..........|++..+++.|..+
T Consensus 473 ~~~~al~ali~alrld~~---~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVS---LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHH
Confidence 3445666554433 3332 345899999999888899999999999887653 4678889999999999999999998
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011137 161 FLSMHEHG-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 161 ~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
.-..-+.. ...-..-|....-.|.+.++...|..-|+......|.|...|..++.+|..+|++..|+++|.+.... .
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 43332211 00111223344556778899999999999888888889999999999999999999999999998765 3
Q ss_pred CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHhccCCHHHHHHHHH-------HHHH
Q 011137 240 PNL-TTYNIVLKGYFRAGQIEEAWRFFLEMKKRK------CEIDVVTYTTIVHGFGVVGEIKRARNVFD-------GMVN 305 (493)
Q Consensus 240 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~A~~~~~-------~~~~ 305 (493)
|+. ..--...-..+..|++.++...+..+.... -.--..++-.+...+...|-..+|..+++ -...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 332 122223334567899999998888776541 11112333333333333343333333333 3332
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHH--H----HHHHH-HHHHhCCC--------------------CCChhhHHHHHHHHH
Q 011137 306 GGVLPSVATYNAMIQVLCKKDSVE--N----AILVF-EEMVGKGY--------------------MPNSTTYNVVIRGLC 358 (493)
Q Consensus 306 ~~~~~~~~~~~~li~~~~~~~~~~--~----a~~~~-~~~~~~~~--------------------~~~~~~~~~li~~~~ 358 (493)
....-+...|-.+-++|.-.-..+ . ...++ .+....+. ..+..+|..++..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 221223333333222221100000 0 00000 11111111 112334444443332
Q ss_pred h-------c-CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc
Q 011137 359 H-------T-GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR 430 (493)
Q Consensus 359 ~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 430 (493)
+ . .+...|...+...++.. ..+..+|+.|.-. ...|++.-|...|-+-... .+....+|..+.-.+.+.
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheeccceeEEec
Confidence 2 1 22346777777777653 3466777777666 5567777777777665553 234567788887778888
Q ss_pred CCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 431 KKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 431 ~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
.+++. |...|...+.. .|+ ...|..........|+.-++..++.
T Consensus 864 ~d~E~---A~~af~~~qSL--dP~nl~~WlG~Ali~eavG~ii~~~~lfa 908 (1238)
T KOG1127|consen 864 QDFEH---AEPAFSSVQSL--DPLNLVQWLGEALIPEAVGRIIERLILFA 908 (1238)
T ss_pred ccHHH---hhHHHHhhhhc--CchhhHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88888 77788777764 343 5555544444555677666666664
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.1e-08 Score=55.45 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 449 RGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 449 ~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 367788888888888888888888888888776
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.5e-05 Score=80.44 Aligned_cols=171 Identities=11% Similarity=0.084 Sum_probs=119.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.+...+..++..+...+++++|.++.+......+ -....|..+...+.+.++.+.+..+ . +
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~ 89 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL--N---------------L 89 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh--h---------------h
Confidence 44778999999999999999999999997776542 2334444444477777776666554 2 2
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
+.......++.....+...+.. ...+..++..++.+|-+.|+.++|..+|+++.+.... |..+.|.+...|... +++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence 2333333333222222333332 3335557788889999999999999999999888744 788888899888888 999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
+|.+++.+.... |...+++..+.+++.++...
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~ 198 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHY 198 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhc
Confidence 999888877654 44555666777777776664
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-05 Score=77.53 Aligned_cols=148 Identities=11% Similarity=0.106 Sum_probs=113.6
Q ss_pred CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 169 CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 169 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (493)
.+.+...+-.|.......|.+++|..+++...+..|.+......++..+.+.+++++|+..+++..+.... +......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence 45567778888888888888888888888888777777778888888888888888888888888877554 66677778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 319 (493)
..++.+.|++++|..+|+++...+. -+..++..+...+...|+.++|...|++..+. ..+....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8888888888888888888887433 35777888888888888888888888888765 223445555443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.2e-05 Score=63.80 Aligned_cols=187 Identities=11% Similarity=0.086 Sum_probs=120.2
Q ss_pred CCHHHHHHHHHHHHh---CC-CCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 152 GKADRAVKIFLSMHE---HG-CRQSLN-SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 152 g~~~~a~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
.+.++.++++.++.. .| ..++.. .|..++-+....|+.+.|...++.+..++|.+...--.-.-.+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 345666666665542 22 334443 3455556667778888888888887777654444433333344457788888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
+++++.+.+.+.. |.+++..-+...-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.-.+++++-.
T Consensus 106 ~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~ 183 (289)
T KOG3060|consen 106 IEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI 183 (289)
T ss_pred HHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence 8888888776533 6666766666666677777777777777776 4557888888888888888888888888887664
Q ss_pred CCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 011137 307 GVLPSVATYNAMIQVLCKKD---SVENAILVFEEMVGK 341 (493)
Q Consensus 307 ~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~ 341 (493)
. +.+...+..+...+.-.| +.+.+.++|.+..+.
T Consensus 184 ~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 184 Q-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred C-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 2 224444555555544433 455566677766665
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4e-05 Score=73.26 Aligned_cols=343 Identities=16% Similarity=0.141 Sum_probs=198.7
Q ss_pred HHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC
Q 011137 73 DQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG 152 (493)
Q Consensus 73 ~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 152 (493)
...+..+....+.|..+|-. +. .-...|..|.....|++++.+-+. .|.+.-...-.+.++.+...|
T Consensus 537 ra~lail~kkfk~ae~ifle---qn-------~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~ 603 (1636)
T KOG3616|consen 537 RAMLAILEKKFKEAEMIFLE---QN-------ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTG 603 (1636)
T ss_pred HHHHHHHHhhhhHHHHHHHh---cc-------cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcC
Confidence 34455566677777777632 21 234567778888889988876543 344333444556667777788
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 011137 153 KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 153 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
+-++|-++-+ . +-. -.+.|+.|.+.|....|.+....= +....|......+..++.+..-+++|-.+|++
T Consensus 604 qd~ka~elk~----s----dgd-~laaiqlyika~~p~~a~~~a~n~-~~l~~de~il~~ia~alik~elydkagdlfek 673 (1636)
T KOG3616|consen 604 QDEKAAELKE----S----DGD-GLAAIQLYIKAGKPAKAARAALND-EELLADEEILEHIAAALIKGELYDKAGDLFEK 673 (1636)
T ss_pred chhhhhhhcc----c----cCc-cHHHHHHHHHcCCchHHHHhhcCH-HHhhccHHHHHHHHHHHHhhHHHHhhhhHHHH
Confidence 8777765421 1 111 124577888888877776543110 01122444444444444444444444444444
Q ss_pred HHhC----------------------CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 233 MVDR----------------------GLNPNLTTY-NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 233 m~~~----------------------g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
+..- .++..+++. ......+...|+++.|+.-|-+... .-..+.+...
T Consensus 674 i~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~ 744 (1636)
T KOG3616|consen 674 IHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIG 744 (1636)
T ss_pred hhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhh
Confidence 3210 000011111 1112223344455555444433211 1223455667
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
...+.+|+.+++.++..+. -..-|..+.+.|...|+++.|.++|.+. ..++-.|..|.+.|+|+.|.++
T Consensus 745 akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kl 813 (1636)
T KOG3616|consen 745 AKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKL 813 (1636)
T ss_pred hhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHH
Confidence 7888999999988877533 2345777889999999999999998653 2355678889999999999988
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
-.+... .......|-.-..-+-+.|++.+|.++|-.+.+ |+. .|..|-+.|..++ .+++.++-
T Consensus 814 a~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~dd---mirlv~k~--- 876 (1636)
T KOG3616|consen 814 AEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDDD---MIRLVEKH--- 876 (1636)
T ss_pred HHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcchH---HHHHHHHh---
Confidence 777653 244555666666777788888888888755543 442 3556667777777 55554442
Q ss_pred CCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 011137 450 GFMPR--KFTFNRVLNGLLLIGNQGLAKEI 477 (493)
Q Consensus 450 g~~p~--~~~~~~l~~~~~~~g~~~~a~~~ 477 (493)
.|+ ..|-..+..-+...|+.+.|.+-
T Consensus 877 --h~d~l~dt~~~f~~e~e~~g~lkaae~~ 904 (1636)
T KOG3616|consen 877 --HGDHLHDTHKHFAKELEAEGDLKAAEEH 904 (1636)
T ss_pred --ChhhhhHHHHHHHHHHHhccChhHHHHH
Confidence 222 34444555555555555555443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-05 Score=80.11 Aligned_cols=214 Identities=11% Similarity=0.098 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKS--LSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
......+=.++.+.+....+..-+-++.. +....++.++..|.....+.|.+++|..+++...+.. +.+......+.
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a 127 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILML 127 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHH
Confidence 44556666677777777666555555432 2355679999999999999999999999999999864 45567788889
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
..+.+.+++++|...+++.....+.+....+.+..++.+.|++++|..+|+++...+.. +..++..+...+-..|+.++
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~ 206 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWR 206 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999888888899999999999999999999999999985443 57899999999999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhc
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG----VLPSVATYNAMIQVLCKK 325 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~li~~~~~~ 325 (493)
|...|+...+.. .+...-|+.++ +++..-...++++.-.+ ..........+|..|.+.
T Consensus 207 A~~~~~~a~~~~-~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 207 ARDVLQAGLDAI-GDGARKLTRRL------VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred HHHHHHHHHHhh-CcchHHHHHHH------HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence 999999998863 33445555443 33444555666654332 223344556666666554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.00012 Score=67.20 Aligned_cols=117 Identities=14% Similarity=0.066 Sum_probs=53.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011137 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQVLCKKDSVENAI 332 (493)
Q Consensus 254 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~ 332 (493)
..|++++|+..++.+... .+-|+..+....+.+.+.++.++|.+.++++... .|+ ....-.+..+|.+.|+..+|.
T Consensus 318 ~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHH
Confidence 344455555555554443 2224444444444455555555555555554443 122 333334444455555555555
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 333 LVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
.+++....... -|+..|..|.++|...|+..++..-..+..
T Consensus 395 ~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 395 RILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 55544444322 244445555555555555444444444443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.8e-05 Score=64.51 Aligned_cols=249 Identities=15% Similarity=0.139 Sum_probs=153.4
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
+-+.=.|++..++..-....... .+...-..+.++|...|.+...+. ++.... .+.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 33444677777766665554432 355556667777877877654433 232222 233333333333333333333
Q ss_pred HHH-HHHHHhhcC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 191 KAY-NLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 191 ~A~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+-. ++.+.+... ...+......-...|+..|++++|++..+... +......=..++.+..+.+-|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 233333332 22232333444566888899999988877622 3334444456667788889999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 011137 269 KKRKCEIDVVTYTTIVHGFG----VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM 344 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 344 (493)
.+.. +..+.+.|..++. ..+.+.+|.-+|++|.++ ..|+..+.+-...++...|++++|..++++...+...
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 8753 4556666666654 345788999999998875 5678888888888888999999999999998887544
Q ss_pred CChhhHHHHHHHHHhcCCH-HHHHHHHHHhhhC
Q 011137 345 PNSTTYNVVIRGLCHTGEM-ERALEFVGRMKDD 376 (493)
Q Consensus 345 ~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~ 376 (493)
++.+...++-+-...|.. +-..+.+..+...
T Consensus 240 -dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 240 -DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred -CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 566666666555555654 3344555555544
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.4e-06 Score=67.00 Aligned_cols=95 Identities=12% Similarity=-0.059 Sum_probs=57.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+......+...|++++|...|+...... +.+...|..+..++...|++++|...|+......+.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 3344555566666666666666665543 345556666666666666666666666666555555666666666666666
Q ss_pred CChhHHHHHHHHHHhC
Q 011137 221 KRTNKALEVLKEMVDR 236 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~ 236 (493)
|++++|...|+...+.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00014 Score=60.85 Aligned_cols=163 Identities=14% Similarity=0.118 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
|..++-+....|+.+.|...++.+..+- +-+..+-..-.-.+-..|++++|+++|+.+.+.+ +.|..++-.-+...-.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka 132 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKA 132 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHH
Confidence 3344444444555555555555555442 2233332222333344555555555555555443 3344444444444444
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG---QIEEAW 262 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~ 262 (493)
.|+--+|++-+....+.+..|...|.-+...|...|++++|.-.++++.-..+. +...+..+...+.-.| +.+.+.
T Consensus 133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555543221 2333333444333333 233444
Q ss_pred HHHHHHHHC
Q 011137 263 RFFLEMKKR 271 (493)
Q Consensus 263 ~~~~~~~~~ 271 (493)
+.|.+..+.
T Consensus 212 kyy~~alkl 220 (289)
T KOG3060|consen 212 KYYERALKL 220 (289)
T ss_pred HHHHHHHHh
Confidence 444444443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.2e-06 Score=65.11 Aligned_cols=95 Identities=12% Similarity=-0.054 Sum_probs=60.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
+..+...+...|++++|...|+......+.+...|..+..++...|++++|...|++....... +...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence 3344555666666666666666666555556666666666666666666666666666655433 555666666666666
Q ss_pred CCHHHHHHHHHHHHHC
Q 011137 256 GQIEEAWRFFLEMKKR 271 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~ 271 (493)
|+.++|+..|+...+.
T Consensus 106 g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 106 GEPGLAREAFQTAIKM 121 (144)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 6666666666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.7e-05 Score=67.67 Aligned_cols=239 Identities=11% Similarity=0.052 Sum_probs=148.0
Q ss_pred HHHHHHhhChHHHHHHHHHhhc---CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHH
Q 011137 74 QIIKRLWNHALKALHFFNILSY---HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLS--LGPTQKTFAIIAERY 148 (493)
Q Consensus 74 ~~l~~~~~~~~~A~~~~~~~~~---~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~ 148 (493)
..+.+...++..-.+||+.+.. ..+.+| ... +..=.-..+...+...-+.+...+ -.|+.......+...
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p-~yl----~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~ 284 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPP-EYL----LTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK 284 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCC-hHH----hcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence 4444445566667788888762 222222 111 111111122233333344443322 234555556666554
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (493)
.....-..+..++.+..+.+ -..--|.. ...+...|+++.|+..++.+....|.|+..+......+.+.++..+|.+
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~--~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 285 YEALPNQQAADLLAKRSKRG--GLAAQYGR-ALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred hccccccchHHHHHHHhCcc--chHHHHHH-HHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 44443333433333332211 11222333 3345567888888888888887777788888888888888888888888
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 229 VLKEMVDRGLNPN-LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 229 ~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
.++++.... |+ ......+..++.+.|++.+|+++++....... .|+..|..|..+|...|+..++..-..+....
T Consensus 362 ~~~kal~l~--P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p-~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~- 437 (484)
T COG4783 362 RLKKALALD--PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP-EDPNGWDLLAQAYAELGNRAEALLARAEGYAL- 437 (484)
T ss_pred HHHHHHhcC--CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CCchHHHHHHHHHHHhCchHHHHHHHHHHHHh-
Confidence 888888763 34 45566778888888888888888888877744 48888888888888888888888887776653
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 308 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
.|+++.|...+....+.
T Consensus 438 -----------------~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 -----------------AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred -----------------CCCHHHHHHHHHHHHHh
Confidence 35666666666666554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.45 E-value=0.0022 Score=63.30 Aligned_cols=219 Identities=13% Similarity=0.121 Sum_probs=119.3
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHH--HHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 82 HALKALHFFNILSYHPTYAHSPSSFDHAID--LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
+.++|+.-.+.+.++.+-. .|..++. .+.+.|..++|..+++.....+.. |..|...+-.+|.+.|+.++|..
T Consensus 24 qfkkal~~~~kllkk~Pn~----~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNA----LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 4567777777765543222 2333333 245677888888777777665543 77777888888888888888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc-CCh---------hHHHHH
Q 011137 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV-KRT---------NKALEV 229 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~---------~~A~~~ 229 (493)
+|+..... -|+......+..+|.+.+.+.+-.+.--++.+.++.+...+=.+++..... ... .-|.+.
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m 176 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM 176 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence 88887764 355666666777777777665533332233333333444333333333321 111 223344
Q ss_pred HHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 230 LKEMVDRG-LNPNLTTYNIVLKGYFRAGQIEEAWRFF-LEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 230 ~~~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
++.+.+.+ ..-+..-...-...+...|++++|+.++ ....+.-...+...-+.-+..+...+++.+..++-.++...|
T Consensus 177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44444332 1111222222233344566677777776 333333333344444455566666666666666666665554
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00044 Score=68.77 Aligned_cols=335 Identities=12% Similarity=0.011 Sum_probs=193.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc--chHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV--ISYNVIAN 215 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~ 215 (493)
...|..+...|....+..+|.+.|+...+.+ .-+...+....+.|++..+++.|..+.-...+..+.-. ..|....-
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 4578888888888888889999999888765 45677788888999999999999888443333222111 22334555
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
.|.+.++...|...|+...+..+. |...|..++.+|...|++..|.++|.+....++. +...---..-.-+..|.+.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-SKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-hHHHHHHHHHHHHHhhhHHH
Confidence 677888999999999988887655 7788999999999999999999999888776332 22222223334567888999
Q ss_pred HHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-------HHhCCCCCChhhHHHHHHHHH----
Q 011137 296 ARNVFDGMVNG------GVLPSVATYNAMIQVLCKKDSVENAILVFEE-------MVGKGYMPNSTTYNVVIRGLC---- 358 (493)
Q Consensus 296 A~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~li~~~~---- 358 (493)
|...+..+... +..--..++..+...+.-.|-..+|...++. ........+...|-.+-.+|.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 98888877542 1111122333333333333333333333322 222211112222222222221
Q ss_pred -------------------hcCCH---H---HHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----c----CCHHHHHHHH
Q 011137 359 -------------------HTGEM---E---RALEFVGRMKDDECEPNVQTYNILIRYFCD----A----GEIERGLELF 405 (493)
Q Consensus 359 -------------------~~~~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~----g~~~~a~~~~ 405 (493)
..+.. + -+.+.+-.-.+ ...+..+|..|+..|.+ . .+...|...+
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~ 806 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCC 806 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHH
Confidence 11111 1 01111111111 11223344444444433 1 2334677777
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 406 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
++.++. ...+..+|+.|.-. ...|.+.- |.--|-+-... .+-+..+|..+.-.+.+..+++-|.+.+.+..-
T Consensus 807 KkaV~L-~ann~~~WnaLGVl-sg~gnva~---aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qS 878 (1238)
T KOG1127|consen 807 KKAVSL-CANNEGLWNALGVL-SGIGNVAC---AQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQS 878 (1238)
T ss_pred HHHHHH-hhccHHHHHHHHHh-hccchhhh---hhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhh
Confidence 777664 33466677776544 44455544 55555544433 133466777777777888888888888876654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.7e-05 Score=61.40 Aligned_cols=94 Identities=15% Similarity=0.060 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
...+...+...|++++|.+.++.+...+.. +...+..+...+.+.|++++|..+++...+.+ +.+...+..+...|..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 333344444444444444444444433221 33344444444444444444444444443332 1133333444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVN 305 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~ 305 (493)
.|++++|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4444444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.34 E-value=2.6e-05 Score=61.50 Aligned_cols=97 Identities=15% Similarity=0.121 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
.....+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...++......+.+...+..+...+.
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 334445555555566666666665555433 3344555555555555566666665555555444445555555555555
Q ss_pred hcCChhHHHHHHHHHHhC
Q 011137 219 LVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~ 236 (493)
..|++++|.+.|+...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 666666666666555543
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.0031 Score=58.83 Aligned_cols=185 Identities=9% Similarity=0.098 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV---GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVF 335 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 335 (493)
+++.++++.....-...+..+|..+...--.. ...+...+.++++...-..--..+|...+..-.+..-.+.|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 44555555544432222344444443322111 235666777777665422223457888888888999999999999
Q ss_pred HHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 336 EEMVGKGYMP-NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 336 ~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
.++.+.+..+ +....++++..+|. ++.+-|.++|+--.+. ..-+..--...++.+...|+-..+..+|++....++.
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 9999987776 77888899988874 7889999999987765 2334455567788888999999999999999998666
Q ss_pred CC--HHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 011137 415 PN--LDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 415 p~--~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
+| ..+|..++.-=..-|+... +.++-+++..
T Consensus 468 ~~ks~~Iw~r~l~yES~vGdL~s---i~~lekR~~~ 500 (656)
T KOG1914|consen 468 ADKSKEIWDRMLEYESNVGDLNS---ILKLEKRRFT 500 (656)
T ss_pred hhhhHHHHHHHHHHHHhcccHHH---HHHHHHHHHH
Confidence 55 5789999987777888887 7777776654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.9e-05 Score=59.41 Aligned_cols=115 Identities=12% Similarity=0.138 Sum_probs=55.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADV---ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL--TTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~ 260 (493)
.++...+...++.+....+.+. ...-.+...+...|++++|...|++.......++. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555555555554433331 22333445555556666666666655554422221 223334555555566666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
|+..++..... ......+....++|.+.|+.++|...|+.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555443222 12333444555555555555555555543
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.1e-05 Score=70.66 Aligned_cols=122 Identities=16% Similarity=0.213 Sum_probs=67.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcc
Q 011137 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKE 186 (493)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 186 (493)
..++..+...++++.|..+++++.+.. |+ ....+++.+...++-.+|++++.+..+.. +.+...+..-...+.+.
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k 247 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK 247 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 334444444556666666666665543 22 23335555555556666666666555432 33444455455555566
Q ss_pred CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
++.+.|+.+.++.....|.+..+|..|..+|.+.|+++.|+..++.+
T Consensus 248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 66666666666655555555556666666666666666666555544
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.4e-05 Score=69.02 Aligned_cols=89 Identities=16% Similarity=0.112 Sum_probs=37.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS 327 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 327 (493)
+++.+...++-.+|.+++++..+.. +.+......-...+.+.++++.|+++.+++.+.. +-+..+|..|..+|...|+
T Consensus 206 LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d 283 (395)
T PF09295_consen 206 LARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGD 283 (395)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCC
Confidence 3344444444444444444444331 1133333333444444444444444444444421 1122344444444444444
Q ss_pred HHHHHHHHHHH
Q 011137 328 VENAILVFEEM 338 (493)
Q Consensus 328 ~~~a~~~~~~~ 338 (493)
++.|+..++.+
T Consensus 284 ~e~ALlaLNs~ 294 (395)
T PF09295_consen 284 FENALLALNSC 294 (395)
T ss_pred HHHHHHHHhcC
Confidence 44444444433
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.0084 Score=59.47 Aligned_cols=223 Identities=10% Similarity=0.090 Sum_probs=146.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA--ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 191 (493)
...+++..|..-...+.+.. |+.. |..++ -...+.|+.++|..+++.....+. .|..+...+-.+|.+.|+.++
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~ 95 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDE 95 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhH
Confidence 45678899999888887763 3432 22222 345688999999999888776553 378889999999999999999
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------CHHHH
Q 011137 192 AYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG----------QIEEA 261 (493)
Q Consensus 192 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------~~~~a 261 (493)
|..+|++..+..|. ......+..+|.+.+++.+-.+.--+|.+. ..-+...+=.+++.....- -..-|
T Consensus 96 ~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA 173 (932)
T KOG2053|consen 96 AVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA 173 (932)
T ss_pred HHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence 99999999887665 777888888999988887665555555443 2224444445555544321 12346
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 262 WRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFD-GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339 (493)
Q Consensus 262 ~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 339 (493)
.+.++.+.+.+ ..-+..-...-...+...|++++|.+++. ...+.-...+...-+.-+..+...+++.+..++-.++.
T Consensus 174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 66777776654 22122222233445667888999999994 33333222333444455666667777777777776666
Q ss_pred hCC
Q 011137 340 GKG 342 (493)
Q Consensus 340 ~~~ 342 (493)
.+|
T Consensus 254 ~k~ 256 (932)
T KOG2053|consen 254 EKG 256 (932)
T ss_pred HhC
Confidence 664
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00014 Score=57.91 Aligned_cols=125 Identities=13% Similarity=0.196 Sum_probs=67.4
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS---VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS--TTYNVVI 354 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li 354 (493)
|..++..+ ..++...+...++.+.+.... + ....-.+...+...|++++|...|+........+.. .....+.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33333333 256666666666666654221 2 122333445566667777777777666665422221 2233345
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
..+...|++++|+..++..... ......+....+.|.+.|+.++|...|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5566667777777766554332 223445556666667777777777666653
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.13 E-value=4.6e-06 Score=47.86 Aligned_cols=33 Identities=42% Similarity=0.935 Sum_probs=23.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN 241 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 241 (493)
+||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777777665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.06 E-value=8.5e-06 Score=46.35 Aligned_cols=33 Identities=24% Similarity=0.516 Sum_probs=21.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456666666666666666666666666666654
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-05 Score=46.27 Aligned_cols=32 Identities=44% Similarity=0.837 Sum_probs=14.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011137 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 346 (493)
|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 44444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00014 Score=67.49 Aligned_cols=124 Identities=11% Similarity=0.161 Sum_probs=100.3
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011137 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG--GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349 (493)
Q Consensus 272 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 349 (493)
+.+.+......+++.+....+++.+..++-+.... ....-..|..++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 45557778888888888888899999998888765 2222234556899999999999999999998888999999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 011137 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA 395 (493)
Q Consensus 350 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 395 (493)
++.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999988886666777776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.006 Score=53.16 Aligned_cols=179 Identities=10% Similarity=0.059 Sum_probs=89.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLT--TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
.....+...|++++|.+.|+++.......... ..-.++.++.+.+++++|...+++..+..+.....-+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 33444455666666666666666543322111 1133455566666666666666666665332222222222222221
Q ss_pred --c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhh
Q 011137 290 --V---------------GE---IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTT 349 (493)
Q Consensus 290 --~---------------g~---~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 349 (493)
. .| ..+|++.|+++++. |=...-..+|...+..+... -...
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----la~~ 177 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----LAKY 177 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----HHHH
Confidence 0 11 22344444444443 22222233444433333322 0111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 350 YNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 350 ~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
--.+...|.+.|.+..|..-++.+++. +.+........++.+|...|..++|.++...+.
T Consensus 178 e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 178 ELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 113455567777777777777777765 334445566677777777777777777665543
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=52.56 Aligned_cols=87 Identities=15% Similarity=0.185 Sum_probs=34.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhH
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (493)
..+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++......+.+..++..+...+...|++++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEE 86 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHH
Confidence 33344444444444444443321 11223333334444444444444444444333333333334444444444444444
Q ss_pred HHHHHHHH
Q 011137 226 ALEVLKEM 233 (493)
Q Consensus 226 A~~~~~~m 233 (493)
|...+...
T Consensus 87 a~~~~~~~ 94 (100)
T cd00189 87 ALEAYEKA 94 (100)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.014 Score=52.43 Aligned_cols=320 Identities=14% Similarity=0.138 Sum_probs=156.5
Q ss_pred HHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH--HH
Q 011137 74 QIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR--LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER--YV 149 (493)
Q Consensus 74 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~ 149 (493)
.++..++..|..+-++|..-++..+ |..+-..+.. .||-..|.++-.+-.+. +..|...+..++.+ -.
T Consensus 60 wlv~~iw~sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal 131 (531)
T COG3898 60 WLVRSIWESPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAAL 131 (531)
T ss_pred HHHHHHHhCcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHH
Confidence 4455566777777777776665543 4555444443 45666666555543322 23455555555543 33
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNS--FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
-.|+++.|.+-|+.|... |.... ...|.-.--+.|+.+.|.++-+.....-+.-...+...+...|..|+++.|+
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~Al 208 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGAL 208 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHH
Confidence 457777777777777652 22111 1222222344566777766666655554555566667777777777777777
Q ss_pred HHHHHHHhCC-CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 228 EVLKEMVDRG-LNPNLTTY--NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 228 ~~~~~m~~~g-~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
++++.-.... +.++..-- ..|+.+- .|.. -..+...|...-.+..
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAk--------------A~s~------------------ldadp~~Ar~~A~~a~ 256 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAK--------------AMSL------------------LDADPASARDDALEAN 256 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHH--------------HHHH------------------hcCChHHHHHHHHHHh
Confidence 7776655332 22222111 1111110 0000 0112333333333332
Q ss_pred HCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC-C
Q 011137 305 NGGVLPSVATY-NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEP-N 381 (493)
Q Consensus 305 ~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~-~ 381 (493)
+ +.||...- -.-..++.+.|+..++-.+++.+.+...+|+. + .+..+.+.|+ .+..-+++..+. .++| +
T Consensus 257 K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a--~lY~~ar~gd--ta~dRlkRa~~L~slk~nn 328 (531)
T COG3898 257 K--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--A--LLYVRARSGD--TALDRLKRAKKLESLKPNN 328 (531)
T ss_pred h--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--H--HHHHHhcCCC--cHHHHHHHHHHHHhcCccc
Confidence 2 23332211 22234556666666666666666666444432 1 1112223333 333333333222 1222 3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHC
Q 011137 382 VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR-KKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 382 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~~~~A~~~~~~m~~~ 449 (493)
.+....+..+-...|++..|..--+.... ..|....|..|.+.-... |+-++ +...+-+.++.
T Consensus 329 aes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~---vR~wlAqav~A 392 (531)
T COG3898 329 AESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGK---VRQWLAQAVKA 392 (531)
T ss_pred hHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHH---HHHHHHHHhcC
Confidence 44455555666666666666655555544 345556665555543332 55555 55666665543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.93 E-value=1.7e-05 Score=45.02 Aligned_cols=28 Identities=32% Similarity=0.629 Sum_probs=10.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011137 315 YNAMIQVLCKKDSVENAILVFEEMVGKG 342 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~~~~~~ 342 (493)
|+.++.+|++.|+++.|..+|++|.+.|
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~g 31 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQG 31 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333333333333333333333333333
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0002 Score=66.54 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=96.7
Q ss_pred hcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 011137 200 RGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR--GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV 277 (493)
Q Consensus 200 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 277 (493)
....+.+......+++.+....+++.+..++.+.... ....-..|..++++.|.+.|..++++.+++.=...|+-||.
T Consensus 59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 3445556677777888888888888888888888754 22222345568888899999889999888888888888899
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011137 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325 (493)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 325 (493)
.+++.||+.+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988888887776666667776666666554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00018 Score=52.27 Aligned_cols=93 Identities=15% Similarity=0.264 Sum_probs=46.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (493)
..+...+...|++++|...++++.+.... +...+..+..++...|++++|.+.++........ +..++..+...+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 81 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPD-NAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-chhHHHHHHHHHHHH
Confidence 34444445555555555555555443221 2234444555555555555555555555544222 334455555555555
Q ss_pred CCHHHHHHHHHHHHH
Q 011137 291 GEIKRARNVFDGMVN 305 (493)
Q Consensus 291 g~~~~A~~~~~~~~~ 305 (493)
|+.+.|...+....+
T Consensus 82 ~~~~~a~~~~~~~~~ 96 (100)
T cd00189 82 GKYEEALEAYEKALE 96 (100)
T ss_pred HhHHHHHHHHHHHHc
Confidence 555555555555443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.016 Score=52.08 Aligned_cols=96 Identities=15% Similarity=0.106 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHH--HhcCChHHHHHHHHHHhhCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011137 102 SPSSFDHAIDLA--ARLRDYRTVWTLVHRMKSLSLGPTQK--TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFN 177 (493)
Q Consensus 102 ~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (493)
|..-.-.++.+- .-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|.+.-+..-... +.-...+.
T Consensus 117 DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~ 192 (531)
T COG3898 117 DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAAR 192 (531)
T ss_pred cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHH
Confidence 444444444433 3469999999999999863 2222 23334444557799999998888776543 33457888
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhc
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~ 201 (493)
.++...|..|+++.|+++++.-+.
T Consensus 193 AtLe~r~~~gdWd~AlkLvd~~~~ 216 (531)
T COG3898 193 ATLEARCAAGDWDGALKLVDAQRA 216 (531)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHH
Confidence 999999999999999999986554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.016 Score=52.45 Aligned_cols=158 Identities=12% Similarity=0.023 Sum_probs=98.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH-------------H
Q 011137 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY-------------N 316 (493)
Q Consensus 250 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-------------~ 316 (493)
.++...|+.++|.++--.+.+.... +......-..++.-.++.+.|...|++.+..+ |+...- .
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHH
Confidence 4455678888888877777665322 22222222233445677788888888777643 332211 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGK---GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (493)
.-..-..+.|.+..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--++..+.. ..-...|..-..++.
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l 332 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-SSYIKALLRRANCHL 332 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHH
Confidence 1122335678888888888887765 345566677777777778888888888887777542 111223333344556
Q ss_pred hcCCHHHHHHHHHHHhcC
Q 011137 394 DAGEIERGLELFEKMGSG 411 (493)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~ 411 (493)
..+++++|.+-|++..+.
T Consensus 333 ~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 677888888888877664
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00041 Score=53.14 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=41.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---CcchHHHHHHH
Q 011137 142 AIIAERYVSAGKADRAVKIFLSMHEHGC--RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA---DVISYNVIANG 216 (493)
Q Consensus 142 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~ 216 (493)
...+..+.+.|++++|.+.|+.+..... +.....+..+..++.+.|+++.|...|+.+....+. ...++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444444555555555544443210 001223334444455555555555555544432211 12334444445
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 011137 217 WCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~ 236 (493)
+.+.|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555444
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00049 Score=52.68 Aligned_cols=96 Identities=10% Similarity=0.105 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE--IDVVTYTTIVHG 286 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~ 286 (493)
..++..+.+.|++++|.+.|+++.+.... .....+..+..++.+.|++++|.+.++.+...... ....++..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444445555555555544433211 01223344445555555555555555554443211 112334444444
Q ss_pred HhccCCHHHHHHHHHHHHHC
Q 011137 287 FGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~~~ 306 (493)
+.+.|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 55555555555555555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00036 Score=54.67 Aligned_cols=87 Identities=10% Similarity=-0.003 Sum_probs=39.3
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 261 (493)
.+...|++++|..+|+.+..-.+.+..-|..|..++...|++++|+..|.......+. |...+-.+..++...|+.+.|
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 3344444444444444443333334444444444444444444444444444444332 344444444444444444444
Q ss_pred HHHHHHHH
Q 011137 262 WRFFLEMK 269 (493)
Q Consensus 262 ~~~~~~~~ 269 (493)
.+-|+..+
T Consensus 123 ~~aF~~Ai 130 (157)
T PRK15363 123 IKALKAVV 130 (157)
T ss_pred HHHHHHHH
Confidence 44444433
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.02 Score=51.87 Aligned_cols=110 Identities=11% Similarity=0.168 Sum_probs=76.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 011137 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC 358 (493)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 358 (493)
+.+..+.-+...|+...|.++-.+.. + |+...|...+.+++..++|++-..+... + -++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 34445566667788777777765542 2 6788888888888888888877765432 1 14567888888888
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
+.|...+|..+..++. +..-+..|.++|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 8888888888877621 134577788888888887665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0056 Score=53.32 Aligned_cols=57 Identities=7% Similarity=0.038 Sum_probs=35.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGK--GYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
.+..-|.+.|.+..|..-++.+.+. +..........++.+|...|..++|..+...+
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3445566777777777777777665 22223445556667777777777776665544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00076 Score=52.90 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=77.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+......+...+...|++++|..+|+.+...+ +.+...|-.|..++-..|++++|+..|.....-.+.|...+-.+..+
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c 112 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC 112 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence 34455556666778888888888888888765 44566677788888888888888888888776667788888888888
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 011137 217 WCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~ 236 (493)
+...|+.+.|.+.|+..+..
T Consensus 113 ~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 113 YLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 88888888888888877654
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=3.4e-05 Score=42.69 Aligned_cols=29 Identities=41% Similarity=0.836 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRG 237 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 237 (493)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00064 Score=60.78 Aligned_cols=130 Identities=12% Similarity=0.091 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL-LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
+|..+++..-+.+..+.|..+|.+..+.+ ..+..+|...... +.-.++.+.|..+|+...+.++.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 45555555555555666666666655332 1222333333332 222344444666666555555555555555556556
Q ss_pred hcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 219 LVKRTNKALEVLKEMVDRGLNPN---LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
+.++.+.|..+|++.... +.++ ...|...+..=.+.|+++.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666655543 2111 135555555555566666666665555543
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.002 Score=57.89 Aligned_cols=214 Identities=16% Similarity=0.162 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 011137 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNP-NLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
++++|..+|++ ....|...|++++|.+.|.+..+. +-.. -...|.....+|. .+++++|.
T Consensus 30 ~~e~Aa~~y~~--------------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai 94 (282)
T PF14938_consen 30 DYEEAADLYEK--------------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAI 94 (282)
T ss_dssp HHHHHHHHHHH--------------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHH
T ss_pred CHHHHHHHHHH--------------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHH
Confidence 56666655543 344556667777777777665321 1100 0122333333332 22555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK-DSVENAILVFEEMVGK 341 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~ 341 (493)
+.+++. +..|...|++..|-+++.++ ...|... |++++|.+.|++..+.
T Consensus 95 ~~~~~A---------------~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 95 ECYEKA---------------IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAEL 144 (282)
T ss_dssp HHHHHH---------------HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHH
T ss_pred HHHHHH---------------HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 555443 34455555555554444433 3344444 5666666666555432
Q ss_pred ----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 342 ----GYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE-----PNVQ-TYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 342 ----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
|.. .-..++..+...+.+.|++++|.++|+++...... .+.. .+-..+-++...|+...|.+.+++...
T Consensus 145 y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~ 224 (282)
T PF14938_consen 145 YEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCS 224 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred HHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 200 01234455666677777888888888777654211 1221 222333355556788888888887765
Q ss_pred C--CCCCC--HHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 411 G--VCLPN--LDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 411 ~--~~~p~--~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
. ++..+ ......|+.++ ..|+.+.+..++.-|+.+.
T Consensus 225 ~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 225 QDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHTTSS
T ss_pred hCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHcccC
Confidence 4 22222 33445555554 4566666555655555544
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00065 Score=49.33 Aligned_cols=81 Identities=14% Similarity=0.225 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSL-GPTQKTFAIIAERYVSAG--------KADRAVKIFLSMHEHGCRQSLNS 175 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~ 175 (493)
+-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 344556667777999999999999999999 899999999999877654 23466788888888888999999
Q ss_pred HHHHHHHHHc
Q 011137 176 FNTILDLLCK 185 (493)
Q Consensus 176 ~~~ll~~~~~ 185 (493)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887654
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00083 Score=60.05 Aligned_cols=131 Identities=15% Similarity=0.093 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAER-YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
.+|-.+++..-+.+..+.|..+|.+..+.+. .+..+|...... |...++.+.|..+|+...+. ++.+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 4688889999999999999999999986542 344555555544 33367777899999999875 56788899999999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCc---chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADV---ISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
+.+.|+.+.|..+|++.....+++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999887755544 48999999999999999999999988864
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0005 Score=49.91 Aligned_cols=25 Identities=28% Similarity=0.693 Sum_probs=10.0
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHH
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIRG 356 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~ 356 (493)
+.+|+.|...+++|+..+|+.++..
T Consensus 89 LtvYqDiL~~~lKP~~etYnivl~~ 113 (120)
T PF08579_consen 89 LTVYQDILSNKLKPNDETYNIVLGS 113 (120)
T ss_pred HHHHHHHHHhccCCcHHHHHHHHHH
Confidence 3333444443444444444444433
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0006 Score=56.00 Aligned_cols=80 Identities=11% Similarity=-0.079 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
..+..+...+...|++++|+..|+........+ ...++..+..++...|++++|+..++......+....++..+...
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 344555555555666666666666655432111 123455555566666666666666655544433334444444444
Q ss_pred HH
Q 011137 217 WC 218 (493)
Q Consensus 217 ~~ 218 (493)
+.
T Consensus 116 ~~ 117 (168)
T CHL00033 116 CH 117 (168)
T ss_pred HH
Confidence 44
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0011 Score=61.66 Aligned_cols=90 Identities=8% Similarity=-0.068 Sum_probs=53.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhH
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (493)
..+...|++++|++.|+++++.. +.+...|..+..+|.+.|++++|+..+++.....+.+...|..+..+|...|++++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 33445566666666666666543 33455555556666666666666666666555555555566666666666666666
Q ss_pred HHHHHHHHHhC
Q 011137 226 ALEVLKEMVDR 236 (493)
Q Consensus 226 A~~~~~~m~~~ 236 (493)
|+..|++..+.
T Consensus 89 A~~~~~~al~l 99 (356)
T PLN03088 89 AKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHh
Confidence 66666666654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00079 Score=60.38 Aligned_cols=133 Identities=13% Similarity=0.064 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCh
Q 011137 278 VTYTTIVHGFGVVGEIKRARNVFDGMV----NGGVL-PSVATYNAMIQVLCKKDSVENAILVFEEMVG----KGY-MPNS 347 (493)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~ 347 (493)
..|..|...|.-.|+++.|+...+.-. +-|.. .....+..+..++.-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 456666677777788888877665432 22221 1234667777788888888888888765432 221 1233
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDD-----ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.....|...|.-..++++|+.++.+-... ..--....|-+|..+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45556777777777888888877654321 1112455677888888888888888877665543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=6.5e-05 Score=53.38 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=7.2
Q ss_pred HHHHHHccCCHHHHHHHH
Q 011137 179 ILDLLCKEKKVEKAYNLF 196 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~ 196 (493)
+..++.+.|++++|..++
T Consensus 31 la~~~~~~~~y~~A~~~~ 48 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELL 48 (84)
T ss_dssp HHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHH
Confidence 333444444444444443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0025 Score=52.46 Aligned_cols=86 Identities=15% Similarity=0.130 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT--QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
..+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|+..+++..+.. +.+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3444455555555555555555555544322111 2344445555555555555555555554432 223333444444
Q ss_pred HHHccCCHH
Q 011137 182 LLCKEKKVE 190 (493)
Q Consensus 182 ~~~~~g~~~ 190 (493)
++...|+..
T Consensus 115 ~~~~~g~~~ 123 (172)
T PRK02603 115 IYHKRGEKA 123 (172)
T ss_pred HHHHcCChH
Confidence 444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0031 Score=51.99 Aligned_cols=117 Identities=12% Similarity=0.021 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 214 (493)
....+..+...+...|++++|...|++..+....+ ....+..+..++.+.|++++|...+++.....+.+...+..+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 34567778888899999999999999988653222 2467888889999999999999999988876666777888888
Q ss_pred HHHHhcCC--------------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 215 NGWCLVKR--------------TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257 (493)
Q Consensus 215 ~~~~~~~~--------------~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 257 (493)
..+...|+ +++|.+++++....+ | ..|..++..+...|+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~--p--~~~~~~~~~~~~~~~ 166 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA--P--NNYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC--c--hhHHHHHHHHHhcCc
Confidence 88888877 578999999988753 2 336666666655554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.012 Score=52.86 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=38.2
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc-CChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHH
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV-KRTNKALEVLKEMVD----RGLNP-NLTTYNIVLKG 251 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~ 251 (493)
..+..|...|++..|-+.+.. +...|... |++++|++.|++..+ .|..- -...+..+...
T Consensus 99 ~A~~~y~~~G~~~~aA~~~~~--------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 99 KAIEIYREAGRFSQAAKCLKE--------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHHCT-HHHHHHHHHH--------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHH--------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 334455566666655544433 33344444 666666666666542 12100 11234455555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 011137 252 YFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~ 271 (493)
+.+.|++++|.++|+++...
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~ 184 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKK 184 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 66666666666666665543
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.67 E-value=6.4e-05 Score=41.55 Aligned_cols=29 Identities=41% Similarity=0.756 Sum_probs=14.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCC
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGSGV 412 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 412 (493)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34555555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=9.4e-05 Score=52.56 Aligned_cols=47 Identities=19% Similarity=0.351 Sum_probs=18.5
Q ss_pred CChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 221 KRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++.
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3444444444444433221 1222233344444444444444444444
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.002 Score=53.10 Aligned_cols=104 Identities=20% Similarity=0.219 Sum_probs=57.5
Q ss_pred CChhhHHHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHH
Q 011137 345 PNSTTYNVVIRGLCH-----TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDT 419 (493)
Q Consensus 345 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 419 (493)
-+..+|..+++.|.+ .|.++-....++.|.+-|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~--------- 113 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM--------- 113 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc---------
Confidence 366677777776653 35566666666677777777777777777776654 2210 0000100000
Q ss_pred HHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 011137 420 YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGN 470 (493)
Q Consensus 420 ~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 470 (493)
....+..-|++++++|.+.|+.||.+++..++..|.+.+.
T Consensus 114 -----------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -----------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 0111122266777777777777777777777766655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0017 Score=60.28 Aligned_cols=93 Identities=8% Similarity=-0.072 Sum_probs=75.5
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
...+...|++++|+..|++.....+.+...|..+..+|.+.|++++|+..++++++.... +...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHH
Confidence 345667788999999888888777777888888888888899999999998888876543 5667888888888889999
Q ss_pred HHHHHHHHHHHCCC
Q 011137 260 EAWRFFLEMKKRKC 273 (493)
Q Consensus 260 ~a~~~~~~~~~~~~ 273 (493)
+|+..|++..+.+.
T Consensus 88 eA~~~~~~al~l~P 101 (356)
T PLN03088 88 TAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHHHhCC
Confidence 99999888887643
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0009 Score=57.70 Aligned_cols=97 Identities=14% Similarity=0.147 Sum_probs=66.1
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 365 (493)
-+.+.+++++|+..|.+.++... -|..-|..-..+|++.|.++.|++-.+..+..+.. ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 35667777788888877777532 25666666777777777777777777766665322 34567777777777777777
Q ss_pred HHHHHHHhhhCCCCCCHHHHH
Q 011137 366 ALEFVGRMKDDECEPNVQTYN 386 (493)
Q Consensus 366 a~~~~~~~~~~~~~~~~~~~~ 386 (493)
|++.|++.++. .|+-.+|-
T Consensus 168 A~~aykKaLel--dP~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALEL--DPDNESYK 186 (304)
T ss_pred HHHHHHhhhcc--CCCcHHHH
Confidence 77777777754 55555553
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.08 Score=51.38 Aligned_cols=122 Identities=11% Similarity=0.061 Sum_probs=74.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-CCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL-SLGP--------TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR 170 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 170 (493)
.|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+. .--|++++|.++|-++.+.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrD-- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRD-- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhh--
Confidence 457889999998888777777777776655432 2210 1111111122 22588999999987776543
Q ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--CCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 011137 171 QSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 171 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
..+..+.+.|++-...++++.-... ...-..+|+.+...+.....|++|.+.|..
T Consensus 765 -------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 765 -------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred -------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677777777666665542221 111224677777777777777777776654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0006 Score=61.11 Aligned_cols=132 Identities=12% Similarity=0.006 Sum_probs=78.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhh----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CC-CCCHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKD----DEC-EPNVQTYNILIRYFCDAGEIERGLELFEKMGSG----VC-LPNLD 418 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~ 418 (493)
.|..|...|.-.|+++.|+...+.-.. -|- ......+..+..++.-.|+++.|.+.|+.-... |- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 344445555556778887776654322 121 112345677777888888888888877654321 21 12334
Q ss_pred HHHHHHHHHhccCCcccHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 419 TYNILISSMFVRKKSDDLLVAGKLLIEMVD----R-GFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 419 ~~~~li~~~~~~~~~~~~~~A~~~~~~m~~----~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
+..+|.+.|.-..+++. |+.++.+-+. . ...-....+.+|..+|...|..+.|..+.+...+
T Consensus 277 scYSLgNtytll~e~~k---AI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQK---AITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 45566666666556666 6666654321 1 1223456677888888888888888877765544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0079 Score=45.52 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=55.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHH
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPN--LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE--IDVVTYTTIVHGF 287 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~ 287 (493)
.+..++-..|+.++|+.+|++....|...+ ...+..+.+.+...|++++|..++++....... .+......+.-++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 344555667777777777777777665533 234555666677777777777777776654211 1222223334455
Q ss_pred hccCCHHHHHHHHHHHHH
Q 011137 288 GVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 288 ~~~g~~~~A~~~~~~~~~ 305 (493)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666777777666655443
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0047 Score=46.73 Aligned_cols=87 Identities=17% Similarity=0.179 Sum_probs=38.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC---CcchHHHHHHHHHhcC
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQS--LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA---DVISYNVIANGWCLVK 221 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 221 (493)
++-..|+.++|+.+|++....|.... ...+-.+...+...|++++|..+++.....++. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 34445555555555555555443222 122333444445555555555555544433322 1122222333444455
Q ss_pred ChhHHHHHHHHH
Q 011137 222 RTNKALEVLKEM 233 (493)
Q Consensus 222 ~~~~A~~~~~~m 233 (493)
+.++|++.+-..
T Consensus 90 r~~eAl~~~l~~ 101 (120)
T PF12688_consen 90 RPKEALEWLLEA 101 (120)
T ss_pred CHHHHHHHHHHH
Confidence 555555554443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.014 Score=56.35 Aligned_cols=203 Identities=10% Similarity=0.111 Sum_probs=117.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC--------CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GCRQ--------SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD 206 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~ 206 (493)
|.+..|..+.......-.++.|...|-+.... |++. +...-.+=+.+ -.|++++|+++|-.+..+
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drr---- 763 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRR---- 763 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchh----
Confidence 67788888877776666777777666554432 1100 00011111222 247777777777655443
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP----NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282 (493)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 282 (493)
...+..+.+.|++-...++++. .|-.. -...++.+...++....+++|.+.|..-... ..
T Consensus 764 ----DLAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 764 ----DLAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred ----hhhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 2445566667777555554432 11111 1356777777777777777777777653221 23
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 362 (493)
.+.++.+..++++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+-.. | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHH
Confidence 456666666665555444443 23556667778888888888888776643221 1 234556777788
Q ss_pred HHHHHHHHHHhh
Q 011137 363 MERALEFVGRMK 374 (493)
Q Consensus 363 ~~~a~~~~~~~~ 374 (493)
|.+|.++-++..
T Consensus 894 W~~avelaq~~~ 905 (1189)
T KOG2041|consen 894 WGEAVELAQRFQ 905 (1189)
T ss_pred HHHHHHHHHhcc
Confidence 888888776654
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.075 Score=48.87 Aligned_cols=127 Identities=14% Similarity=0.240 Sum_probs=78.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHH-HHHHH
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDE-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY-NILIS 425 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~li~ 425 (493)
..|...+.+..+...++.|..+|-+..+.+ +.+++.++++++..++ .|+..-|..+|+--... -||...| +-.+.
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence 455566666667777777888888877776 5567777777777665 46667777777654443 2343333 33344
Q ss_pred HHhccCCcccHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 426 SMFVRKKSDDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 426 ~~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
-+...++-+. |..+|+..+.+ +.-+ ...|..+|..-..-|+...+..+-+.+
T Consensus 475 fLi~inde~n---araLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 475 FLIRINDEEN---ARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HHHHhCcHHH---HHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 4455566666 77777755543 2333 556777777767777776665554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0046 Score=50.74 Aligned_cols=91 Identities=18% Similarity=0.079 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMP--NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY 391 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (493)
.|..+...+...|++++|...|+........+ ...++..+...+...|++++|+..++...... +.....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 44445555555666666666666655442111 12345555566666666666666666665542 2233444444444
Q ss_pred HH-------hcCCHHHHHHHH
Q 011137 392 FC-------DAGEIERGLELF 405 (493)
Q Consensus 392 ~~-------~~g~~~~a~~~~ 405 (493)
+. ..|++++|...+
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~ 136 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWF 136 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHH
Confidence 44 555555444333
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.011 Score=57.65 Aligned_cols=62 Identities=10% Similarity=0.030 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..|.++.......|++++|...+++..+.+ |+...|..+...+...|+.++|.+.+++....
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444444444444555555555555555543 34455555555555555555555555555544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.014 Score=49.54 Aligned_cols=49 Identities=10% Similarity=0.131 Sum_probs=24.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 353 VIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERG 401 (493)
Q Consensus 353 li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a 401 (493)
+...|.+.|.+..|..-++.+++. +.+........++.+|.+.|..+.+
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 444566666666666666666654 1111123344555566666655533
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.016 Score=56.45 Aligned_cols=63 Identities=14% Similarity=0.240 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
...|..+.-.+...|++++|...+++....+ |+...|..+...+...|+.++|.+.|++....
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445544444445566666666666655553 34555555666666666666666666655543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0035 Score=51.74 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=44.9
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----------------CCHHHHHHH
Q 011137 311 SVATYNAMIQVLCK-----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT----------------GEMERALEF 369 (493)
Q Consensus 311 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------------~~~~~a~~~ 369 (493)
+..+|..+++.|.+ .|.++-....+..|.+-|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 45555555555543 345555555666666666666666666666655431 123344555
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHh
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCD 394 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (493)
+++|...|+-||.+++..+++.+.+
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~ 150 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGR 150 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhcc
Confidence 5555555555555555555555533
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.013 Score=49.62 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=60.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-----HH
Q 011137 107 DHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI-----LD 181 (493)
Q Consensus 107 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-----l~ 181 (493)
+.+++.+.-.|.+.-...+++++.+...+.++.....+.+.-.+.|+.+.|...|++..+..-..+....+.+ ..
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 3444444445555555555555555544445555555555555555555555555544432111222122111 12
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.|.-.+++..|...+.++....+.+...-|.-.-+..-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2333444555555555444444444444444444444445555555555555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0027 Score=54.86 Aligned_cols=86 Identities=14% Similarity=0.137 Sum_probs=45.6
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 297 (493)
.+.+++.+|+..|.+.+..... |.+-|..-..+|.+.|.++.|++-.+..+..+.. -..+|..|..+|...|++++|+
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 3445555555555555554333 4455555555555555555555555555544221 3445555555555555555555
Q ss_pred HHHHHHHH
Q 011137 298 NVFDGMVN 305 (493)
Q Consensus 298 ~~~~~~~~ 305 (493)
+.|++.++
T Consensus 170 ~aykKaLe 177 (304)
T KOG0553|consen 170 EAYKKALE 177 (304)
T ss_pred HHHHhhhc
Confidence 55555554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.048 Score=43.80 Aligned_cols=123 Identities=11% Similarity=0.121 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCCHHHH
Q 011137 309 LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE---CEPNVQTY 385 (493)
Q Consensus 309 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~ 385 (493)
.|+...-..|..++.+.|+..+|...|.+...--+.-|....-.+.++....+++..|...++.+.+.. -.|| +.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence 455555556666667777777777777766655445566666666666666777777777776665542 1233 33
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCccc
Q 011137 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 386 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~ 435 (493)
-.+...+...|..+.|+.-|+..... .|+...-......+.+.|+.++
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhH
Confidence 34566666667777777777666663 3444333333333445554444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.012 Score=51.32 Aligned_cols=128 Identities=13% Similarity=0.087 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHH
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG---EIERGLEL 404 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~ 404 (493)
.+....-++.-...+. -|...|..|..+|...|+.+.|..-|.+..+.. +++...+..+..++..+. ...++.++
T Consensus 138 ~~~l~a~Le~~L~~nP-~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNP-GDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCC-CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 3444444444444432 266777777777777777777777777777663 445666666666654432 34567777
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 405 FEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463 (493)
Q Consensus 405 ~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 463 (493)
|+++.... +-|+.+...|...+...|++.+ |...|+.|.+. -|....+..+|.
T Consensus 216 l~~al~~D-~~~iral~lLA~~afe~g~~~~---A~~~Wq~lL~~--lp~~~~rr~~ie 268 (287)
T COG4235 216 LRQALALD-PANIRALSLLAFAAFEQGDYAE---AAAAWQMLLDL--LPADDPRRSLIE 268 (287)
T ss_pred HHHHHhcC-CccHHHHHHHHHHHHHcccHHH---HHHHHHHHHhc--CCCCCchHHHHH
Confidence 77777642 2255666666667777777777 77777777765 233333444443
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.027 Score=47.76 Aligned_cols=67 Identities=13% Similarity=0.141 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (493)
..+-.....+...|++++|++.|+.+...- -+-.....-.++.++.+.|+++.|...++++....|.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~ 74 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN 74 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 334444455556666777776666666431 0112233445556666666666666666666554443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.022 Score=54.50 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
+..+.+-+..|...|.+++|.++-. .| .....|..|.......=+++-|.+.|.+.+..
T Consensus 556 evp~~~~m~q~Ieag~f~ea~~iac----lg--Vv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl--------------- 614 (1081)
T KOG1538|consen 556 EVPQSAPMYQYIERGLFKEAYQIAC----LG--VTDTDWRELAMEALEALDFETARKAYIRVRDL--------------- 614 (1081)
T ss_pred cccccccchhhhhccchhhhhcccc----cc--eecchHHHHHHHHHhhhhhHHHHHHHHHHhcc---------------
Confidence 3344445556777788877765421 11 22234555555444555566666655554432
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
.+-+...-++++.++|-.|+... +...++-.|++.+|-++|.+-
T Consensus 615 ----~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~ 658 (1081)
T KOG1538|consen 615 ----RYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS 658 (1081)
T ss_pred ----HHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence 12233344677777887777653 345566678888888887653
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0008 Score=45.43 Aligned_cols=48 Identities=17% Similarity=0.289 Sum_probs=18.2
Q ss_pred CChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 117 RDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
|++++|.++|+.+....+ .+...+..+..+|.+.|++++|.++++.+.
T Consensus 5 ~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 5 GDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp THHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred cCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444444333321 233333334444444444444444444333
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.13 Score=46.79 Aligned_cols=157 Identities=10% Similarity=0.021 Sum_probs=102.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HH----------HHHHH
Q 011137 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID-VV----------TYTTI 283 (493)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~----------~~~~l 283 (493)
.++...|+.++|.+.-....+.... +......-..++.-.++.+.+..-|++.+..+.... .. .+..-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 4556678888888777776655322 222222223344456778888888888777643211 00 11111
Q ss_pred HHHHhccCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---HHHHH
Q 011137 284 VHGFGVVGEIKRARNVFDGMVNG---GVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNV---VIRGL 357 (493)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~ 357 (493)
.+-..+.|++..|.+.|.+.+.. +..++...|.....+..+.|+.++|+.--++..+- |..-... -..++
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~ 331 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCH 331 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHH
Confidence 23357889999999999998864 34556667777778888999999999888877765 4332222 23355
Q ss_pred HhcCCHHHHHHHHHHhhhC
Q 011137 358 CHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 358 ~~~~~~~~a~~~~~~~~~~ 376 (493)
.-.++|++|.+-++...+.
T Consensus 332 l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 5678999999999988776
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.019 Score=49.99 Aligned_cols=102 Identities=8% Similarity=0.099 Sum_probs=53.0
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHH
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG---QIEEAWRFFLEMKKRKCEIDVVT 279 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~ 279 (493)
.|-|...|..|...|...|+.+.|..-|.+..+...+ +...+..+..++.... ...++..+++++...+.. |+.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~ira 229 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRA 229 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHH
Confidence 4445556666666666666666666666655544222 3334444444333221 234555555555555332 4555
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
...|...+...|++.+|...|+.|.+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555555556666666655555554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.001 Score=44.44 Aligned_cols=52 Identities=12% Similarity=0.114 Sum_probs=21.2
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 234 (493)
+.+.|++++|...|+.+....|.+...+..+..++...|++++|...|+++.
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~ 58 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERAL 58 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3334444444444444443333333444444444444444444444444443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=44.40 Aligned_cols=52 Identities=17% Similarity=0.367 Sum_probs=32.3
Q ss_pred hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 359 HTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 359 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
+.|++++|+++|+.+.... +-+...+..++.+|.+.|++++|.++++++...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666553 335566666666666666666666666666653
|
... |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.071 Score=42.89 Aligned_cols=134 Identities=11% Similarity=0.080 Sum_probs=89.0
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHH
Q 011137 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNV 352 (493)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 352 (493)
.|+......|..+....|+..+|...|++....-...|......+.++....++...|...++.+.+.+.. -++.+.-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 45566666677777777777777777777766545556666666777777777888888888777766311 12234455
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 353 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
+.+.+...|+++.|+.-|+..... .|+...-......+.+.|+.+++..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777778888888888877765 5555555555666677777776665554443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0016 Score=43.45 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=28.6
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
..+.+.|++++|...|+.+.+..+ -+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDP-DNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCST-THHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555555555555432 2445555555555555555555555555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.014 Score=51.36 Aligned_cols=94 Identities=13% Similarity=0.065 Sum_probs=49.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---cchHHHH
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQS----LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD---VISYNVI 213 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l 213 (493)
|...+..+.+.|++++|+..|+.+.+.- |+ ...+-.+..+|...|++++|...|+.+...+|.+ ..++..+
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3333333344566666666666665432 22 2344455556666666666666666655443332 2333444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
...+...|+.++|.+.|+++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555666666666666666554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.002 Score=43.57 Aligned_cols=63 Identities=21% Similarity=0.296 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhc
Q 011137 347 STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG-EIERGLELFEKMGS 410 (493)
Q Consensus 347 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~ 410 (493)
+..|..+...+...|++++|+..|.+.++.. +-+...|..+..+|.+.| ++++|++.+++..+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444555555555555555555555555543 224445555555555555 45555555555443
|
... |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0013 Score=44.46 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG-QIEEAWRFFLEM 268 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~ 268 (493)
|..+...+...|++++|+..|++..+.... +...|..+..++...| ++++|++.+++.
T Consensus 6 ~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 6 WYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 333344444444444444444444333221 2333334444444444 344444444433
|
... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.23 Score=45.69 Aligned_cols=31 Identities=13% Similarity=0.127 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
+-..+.+++.++.-.|+.+.|.+..+.+.+.
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 3444455555666666666666666666554
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.23 Score=45.13 Aligned_cols=81 Identities=14% Similarity=0.200 Sum_probs=38.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG 396 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 396 (493)
..|.-+...|+...|.++-.+.. .|+..-|...+.+++..++|++-.++... +-++.-|..++.+|.+.|
T Consensus 182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCC
Confidence 33444444555555544443331 24555555555555555555554443221 112234555555555555
Q ss_pred CHHHHHHHHHH
Q 011137 397 EIERGLELFEK 407 (493)
Q Consensus 397 ~~~~a~~~~~~ 407 (493)
+..+|..+..+
T Consensus 252 ~~~eA~~yI~k 262 (319)
T PF04840_consen 252 NKKEASKYIPK 262 (319)
T ss_pred CHHHHHHHHHh
Confidence 55555555544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.17 Score=43.20 Aligned_cols=132 Identities=8% Similarity=0.036 Sum_probs=84.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHH----
Q 011137 279 TYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVI---- 354 (493)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li---- 354 (493)
+.+.++..+...|.+.-....+.++++...+.+......+.+.-.+.||.+.|...|++..+..-..|..+.+.++
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 4456666777777777777777777776656667777777777777888888888887666543333333333332
Q ss_pred -HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 355 -RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 355 -~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
..|.-.+++..|...+.+....+ +-+....|.-.-+..-.|+...|.+.++.|.+.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 23445667777777777776653 334444444333444467788888888888774
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.029 Score=44.69 Aligned_cols=70 Identities=20% Similarity=0.336 Sum_probs=36.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS-----GVCLPNLDT 419 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~ 419 (493)
....++..+...|++++|..+.+.+.... +.+...|..+|.+|...|+..+|.++|+++.+ .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34445555556666666666666666553 44555666666666666666666666665532 255555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.014 Score=51.26 Aligned_cols=88 Identities=11% Similarity=0.138 Sum_probs=42.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCH
Q 011137 323 CKKDSVENAILVFEEMVGKGYMPN--STTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEI 398 (493)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~ 398 (493)
.+.|++++|...|+.+.+...... ...+..+..+|...|++++|...|+.+.+. +-+.....+-.++..+...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444555555555555554411100 124444555555555555555555555543 1111233333444455555566
Q ss_pred HHHHHHHHHHhc
Q 011137 399 ERGLELFEKMGS 410 (493)
Q Consensus 399 ~~a~~~~~~~~~ 410 (493)
++|..+|+++.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 666655555554
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.093 Score=50.48 Aligned_cols=54 Identities=11% Similarity=0.053 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
.+...+...+.+...+..|-++|.+|-.. ..+++.....++|.+|..+-+...+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe 801 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE 801 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence 33444444444555555666666655331 2344555566666666666554433
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.19 Score=39.92 Aligned_cols=93 Identities=17% Similarity=0.144 Sum_probs=72.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
....-+...|++++|..+|.-+...+ .-+...|..|..++-..+++++|+..|.........|...+.....++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 34445667899999999998888765 34566777888888888999999998876554444566777788888899999
Q ss_pred hhHHHHHHHHHHhC
Q 011137 223 TNKALEVLKEMVDR 236 (493)
Q Consensus 223 ~~~A~~~~~~m~~~ 236 (493)
.+.|...|+.....
T Consensus 121 ~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 AAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988888763
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.58 Score=43.37 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHH-HH
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGSGV-CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF-NR 460 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ 460 (493)
.+|+.++....+..-++.|..+|-+..+.| +.+++.++++++.-++. |+..- |.++|+--..+ .||...| ..
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~t---a~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRAT---AYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcch---HHHHHHHHHHh--CCCchHHHHH
Confidence 457778888888888999999999999988 55889999999987765 55566 99999987764 4554433 34
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q 011137 461 VLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 461 l~~~~~~~g~~~~a~~~~~ 479 (493)
.+.-+...++-..|..+|+
T Consensus 472 yl~fLi~inde~naraLFe 490 (660)
T COG5107 472 YLLFLIRINDEENARALFE 490 (660)
T ss_pred HHHHHHHhCcHHHHHHHHH
Confidence 5556777888888888877
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.57 Score=43.18 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=24.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
..+...+..++.+..-.|+.++|.+..++|...
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 345666677778888888888888888888765
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.017 Score=46.12 Aligned_cols=68 Identities=19% Similarity=0.246 Sum_probs=35.5
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH-----hCCCCCCHHH
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV-----DRGLNPNLTT 244 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~-----~~g~~p~~~~ 244 (493)
..++..+...|++++|..+.+.+....|.+...|..+|.+|...|+..+|.+.|+++. +.|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444555556666666666666655555566666666666666666666666666553 2355555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=39.73 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=32.6
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
.|.+.+++++|.++++.+...+ +.+...+.....++.+.|++++|.+.|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4555666666666666666553 334555555666666666666666666666553
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0098 Score=40.68 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=23.6
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
|.+.+++++|.++++.+....|.+...|.....++.+.|++++|.+.|+...+
T Consensus 5 ~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 5 YLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34444444444444444443344444444444444444444444444444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.18 Score=48.90 Aligned_cols=162 Identities=16% Similarity=0.120 Sum_probs=91.9
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCC-Cc------chHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKA-DV------ISYNVIANGWCL----VKRTNKALEVLKEMVDRGLNPNLTT 244 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~------~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~ 244 (493)
+..++....-.||-+.+++.+....+.... .+ ..|+..+..++. ....+.|.++++.+.++ -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 345566666667777777766654332100 11 123333333333 34567777788777765 344444
Q ss_pred HH-HHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 245 YN-IVLKGYFRAGQIEEAWRFFLEMKKRK---CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 245 ~~-~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
|. .-.+.+...|++++|++.++...... .+.....+--+...+.-.+++++|.+.|..+.+..- -+..+|..+..
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a 347 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 33 34456667788888888887654321 122334445566667778888888888888877422 23444444433
Q ss_pred H-HHhcCCH-------HHHHHHHHHHHh
Q 011137 321 V-LCKKDSV-------ENAILVFEEMVG 340 (493)
Q Consensus 321 ~-~~~~~~~-------~~a~~~~~~~~~ 340 (493)
+ +...|+. ++|.++|.+...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 3 3345555 777777776643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.96 Score=44.78 Aligned_cols=350 Identities=13% Similarity=0.149 Sum_probs=195.8
Q ss_pred CHHHHHHHHHHH------HhcCChHHHHHHHHHH--------hhCCCCCCHHHHHH-----HHHHHHHcCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLA------ARLRDYRTVWTLVHRM--------KSLSLGPTQKTFAI-----IAERYVSAGKADRAVKIFL 162 (493)
Q Consensus 102 ~~~~~~~li~~~------~~~~~~~~a~~~~~~~--------~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~ 162 (493)
.++.-..|+++. .+..++++-..+.+.+ .+.|++.+..-|.. ++..+...+.+..|+++-.
T Consensus 382 ~pe~QK~LL~AAsfGk~~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~ 461 (829)
T KOG2280|consen 382 QPEEQKSLLRAASFGKASLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAK 461 (829)
T ss_pred CHHHHHHHHHHHhhcccccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHH
Confidence 445555555432 2445566655555543 34467667666655 5677888899999999877
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHccCCH---HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011137 163 SMHEHGCRQSLNSFNTILDLLCKEKKV---EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 163 ~~~~~~~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
.+...-.. ...+|.....-+.+..+. +.+..+-+++... -....+|..+.+-....|+.+-|..+++.=.+.+-.
T Consensus 462 ~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~q 539 (829)
T KOG2280|consen 462 LLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQ 539 (829)
T ss_pred HhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccch
Confidence 66532111 146677777777766432 2222222333332 245677888888888999999998887643222110
Q ss_pred ----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----------CCCCCHHHHHHHHHH--------HhccCCHHHH
Q 011137 240 ----PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----------KCEIDVVTYTTIVHG--------FGVVGEIKRA 296 (493)
Q Consensus 240 ----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~~~~~li~~--------~~~~g~~~~A 296 (493)
.+..-+...+.-+...|+.+-...++-.+... ..+.....|.-+++- +...++-.++
T Consensus 540 V~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~ 619 (829)
T KOG2280|consen 540 VPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQA 619 (829)
T ss_pred hHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhh
Confidence 11222344455566677777666666555443 111122222222220 1111111111
Q ss_pred HHHH--HHHH----HCCCCCCHHHHHHHHHHHHhcCCHH----------HHHHHHHHHHhC-CCCCChhhHHHHHHHHHh
Q 011137 297 RNVF--DGMV----NGGVLPSVATYNAMIQVLCKKDSVE----------NAILVFEEMVGK-GYMPNSTTYNVVIRGLCH 359 (493)
Q Consensus 297 ~~~~--~~~~----~~~~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 359 (493)
...| +... ..+..|+ .......+.+..... +-+.+.+.+... |......+.+--+.-+..
T Consensus 620 ~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~ 696 (829)
T KOG2280|consen 620 LASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLIL 696 (829)
T ss_pred hhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHH
Confidence 1111 1100 0111222 223334444433311 112222222221 333344556666667778
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHH
Q 011137 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVA 439 (493)
Q Consensus 360 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A 439 (493)
.|+-.+|.++-.+.+ -||-..|-.-+.++...+++++-+++-+... .+.-|.-.+.+|.+.|+.++ |
T Consensus 697 ~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~E---A 763 (829)
T KOG2280|consen 697 IGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDE---A 763 (829)
T ss_pred ccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHH---H
Confidence 888888888887776 5688888888889999999988777666554 24556778888889999888 8
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 011137 440 GKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEIL 478 (493)
Q Consensus 440 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 478 (493)
.+++-+... .. ....+|.+.|++.+|.++.
T Consensus 764 ~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 764 KKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hhhhhccCC-----hH----HHHHHHHHhccHHHHHHHH
Confidence 888776432 11 4566788888888876654
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.096 Score=41.61 Aligned_cols=88 Identities=10% Similarity=-0.045 Sum_probs=49.3
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
-+...|++++|..+|.-+...+.- +..-+..|..++-..+++++|+..|......+.. |+..+-....+|...|+.+.
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence 344556666666666665544332 3444455555555666666666666655444322 34444445566666666666
Q ss_pred HHHHHHHHHH
Q 011137 296 ARNVFDGMVN 305 (493)
Q Consensus 296 A~~~~~~~~~ 305 (493)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 6666666555
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.26 Score=41.70 Aligned_cols=212 Identities=9% Similarity=0.095 Sum_probs=106.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011137 97 PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSF 176 (493)
Q Consensus 97 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 176 (493)
+.+.--...|.....+|....++++|...+.+..+. ...+...|. ..+.++.|.-+.+++.+. +--+..|
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~ 94 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLY 94 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHH
Confidence 344445566777777888888888888776665431 112222222 123345555555555542 2234456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh---CC--CCCCHHHHHHHHHH
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD---RG--LNPNLTTYNIVLKG 251 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~---~g--~~p~~~~~~~l~~~ 251 (493)
+....+|..+|..+.|-..+++..+. .+.-++++|+.+|++... .+ ...-...+..+.+.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKAak~---------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKAAKA---------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRV 159 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHHHHH---------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhH
Confidence 66677788888877776666554321 123445555555555432 11 01112234445555
Q ss_pred HHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHH
Q 011137 252 YFRAGQIEEAWRFFLEMKKR-----KCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG---VLPSVATYNAMIQVLC 323 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~ 323 (493)
+.+..++++|-..+.+-... .....-..|-..|-.|.-..|+..|.++++.-.+.+ -.-+..+...|+.+|
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay- 238 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY- 238 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-
Confidence 66666666655544332211 011011223334444455556666766666643321 112344555555555
Q ss_pred hcCCHHHHHHH
Q 011137 324 KKDSVENAILV 334 (493)
Q Consensus 324 ~~~~~~~a~~~ 334 (493)
..||.+++..+
T Consensus 239 d~gD~E~~~kv 249 (308)
T KOG1585|consen 239 DEGDIEEIKKV 249 (308)
T ss_pred ccCCHHHHHHH
Confidence 34555554443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.13 Score=49.07 Aligned_cols=168 Identities=13% Similarity=0.107 Sum_probs=85.6
Q ss_pred CCCHHHHHHHHHHHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 011137 66 HWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIA 145 (493)
Q Consensus 66 ~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 145 (493)
.+++..+.--...++++.+.+.+..+.-.--|.+| ....+.+++.+.+.|-.+.|+++...-. .-.
T Consensus 260 ~ld~~~~~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rF 325 (443)
T PF04053_consen 260 ELDLSELEFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRF 325 (443)
T ss_dssp E--HHHHHHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHH
T ss_pred EECHHHHHHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHh
Confidence 45566665555566666666555543222112222 4456777777777777777766543321 123
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhH
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (493)
....+.|+++.|.++.++ ..+...|..|.+...+.|+++-|++.|++.. -|..|+-.|.-.|+.+.
T Consensus 326 eLAl~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~ 391 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREK 391 (443)
T ss_dssp HHHHHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHH
T ss_pred HHHHhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHH
Confidence 334456777777665332 2355667777777777777777777666543 24556666666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
..++.+.....|- ++....++.-.|+.++..+++.+
T Consensus 392 L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 392 LSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred HHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666655554431 33344444455666665555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.065 Score=41.04 Aligned_cols=50 Identities=14% Similarity=0.135 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCCCHHHHHHHHHH
Q 011137 377 ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG-VCLPNLDTYNILISS 426 (493)
Q Consensus 377 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~ 426 (493)
...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34566666666666666666666666666665443 455556666666653
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.52 Score=40.44 Aligned_cols=58 Identities=10% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 353 VIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 353 li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+.+.|.+.|.+..|..-+++|++. ...-....+-.+..+|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 344566666666666666666654 1111223344555566666666666555444443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0098 Score=41.34 Aligned_cols=61 Identities=26% Similarity=0.389 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDD----EC-EPN-VQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
+++.+...|...|++++|+..+++..+. |- .|+ ..++..+...|...|++++|++.+++..
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555555566666666666666555432 10 111 3445566666666666666666666554
|
... |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.014 Score=40.61 Aligned_cols=24 Identities=25% Similarity=0.380 Sum_probs=9.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
|+.+...|...|++++|+..|++.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444444444444433
|
... |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.8 Score=41.05 Aligned_cols=123 Identities=14% Similarity=0.089 Sum_probs=61.9
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHH-------HHHHHHHHHHcC-CHHHHHHHHHHHHhC--------CCCCC-----
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKT-------FAIIAERYVSAG-KADRAVKIFLSMHEH--------GCRQS----- 172 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g-~~~~a~~~~~~~~~~--------~~~~~----- 172 (493)
.+.|+++.|..++.+........++.. +..+.......+ +++.|...+++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 456777777777777665431122222 222222333445 676666666554432 11111
Q ss_pred HHHHHHHHHHHHccCCHH---HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 173 LNSFNTILDLLCKEKKVE---KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 173 ~~~~~~ll~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
..++..++.+|...+..+ +|..+++.+....+.....+..-+..+.+.++.+++.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 123445555555555433 3444444454444444445555555555566666666666666654
|
It is also involved in sporulation []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.81 Score=41.02 Aligned_cols=101 Identities=9% Similarity=0.117 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 243 TTYNIVLKGYFRAGQIE---EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319 (493)
Q Consensus 243 ~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 319 (493)
.++..++.+|...+..+ +|.++++.+...... .+.++..-++.+.+.++.+.+.+++.+|+..- ......+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 34555666666665543 455555555444222 34455555666666777777777777777652 11223344444
Q ss_pred HHH---HhcCCHHHHHHHHHHHHhCCCCCC
Q 011137 320 QVL---CKKDSVENAILVFEEMVGKGYMPN 346 (493)
Q Consensus 320 ~~~---~~~~~~~~a~~~~~~~~~~~~~~~ 346 (493)
..+ ... ....|...++.+....+.|.
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCC
Confidence 433 222 23345555555544433333
|
It is also involved in sporulation []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.16 Score=38.88 Aligned_cols=49 Identities=16% Similarity=0.006 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC-CCCCCHHHHHHHHHH
Q 011137 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR-GFMPRKFTFNRVLNG 464 (493)
Q Consensus 413 ~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~ 464 (493)
..|+..+..+++.+|+..|++.. |+++++...+. ++.-+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~---al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFS---ALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHH---HHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34666666666666666666666 66666665543 555556666666663
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.11 Score=49.44 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFL 266 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~ 266 (493)
...|..|.....+.|+++-|++.|.
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~ 371 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQ 371 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444444444444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.066 Score=49.88 Aligned_cols=64 Identities=13% Similarity=0.043 Sum_probs=52.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 346 NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV----QTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
+...++.+..+|.+.|++++|+..|++.++. .|+. ..|..+..+|...|++++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567888888888889999999999888876 3442 35888888888999999999999888874
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.34 Score=36.70 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=80.5
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
-.|.+++..++..+.... .+..-+|.+|.-....-+-+-..+.++.+-+- .|. ..+|++.....
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHH
Confidence 457777777777766654 24555666665555444444444444443321 111 12344444444
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.+-.+-. +.......+..+...|+-+. -.+++.++.+.+ .+++.....+..||.+.|+..++.+++..+-+
T Consensus 78 C~~~~n~-----~se~vD~ALd~lv~~~kkDq---Ldki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 78 CYAKRNK-----LSEYVDLALDILVKQGKKDQ---LDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHH---HHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhcc-----hHHHHHHHHHHHHHhccHHH---HHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 4433322 44556667778888888888 667888887643 78899999999999999999999999999988
Q ss_pred cCCC
Q 011137 484 CGRL 487 (493)
Q Consensus 484 ~g~~ 487 (493)
.|..
T Consensus 149 kG~k 152 (161)
T PF09205_consen 149 KGLK 152 (161)
T ss_dssp TT-H
T ss_pred hchH
Confidence 8864
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.085 Score=49.18 Aligned_cols=66 Identities=12% Similarity=0.044 Sum_probs=54.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 135 GPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS-L---NSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 135 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
+.+...+..+..+|...|++++|+..|++.++.. |+ . .+|..+..+|...|+.++|+..+++..+.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999988764 44 2 35888888999999999999988887653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.05 E-value=2.1 Score=44.95 Aligned_cols=53 Identities=21% Similarity=0.395 Sum_probs=25.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHH--HHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLD--TYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 389 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
+.+|..+|++.+|+.+..++... -|.. +-..|+..+...++.-+ |-+++.+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~e---Aa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYE---AAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchh---HHHHHHHHh
Confidence 44455555555555555554431 1111 12445555555555555 555555544
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.61 Score=45.22 Aligned_cols=164 Identities=19% Similarity=0.161 Sum_probs=105.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV------VTYTTIVHGFGV----VGEIKRARNVFDGMVNGGVLPSVA 313 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~ 313 (493)
.+..+++...-.|+-+.+++.+.+..+.+---.+ -.|...+..++. ..+.+.|.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 3455666667778989998888887664311122 223333333333 45788899999999885 35665
Q ss_pred HHHHH-HHHHHhcCCHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 011137 314 TYNAM-IQVLCKKDSVENAILVFEEMVGKGY---MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389 (493)
Q Consensus 314 ~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 389 (493)
.|... .+.+...|+.++|.+.|+....... +.....+--+..++.-..+|++|.+.|..+.+.+ .-+..+|.-+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 55443 4566778999999999997664211 1123345556667778899999999999998864 33344444333
Q ss_pred -HHHHhcCCH-------HHHHHHHHHHhc
Q 011137 390 -RYFCDAGEI-------ERGLELFEKMGS 410 (493)
Q Consensus 390 -~~~~~~g~~-------~~a~~~~~~~~~ 410 (493)
.++...|+. ++|.++|++...
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 333456777 788888877643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.19 Score=43.38 Aligned_cols=116 Identities=16% Similarity=0.177 Sum_probs=63.5
Q ss_pred ChhhHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHH
Q 011137 346 NSTTYNVVIRGLCHT-----GEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTY 420 (493)
Q Consensus 346 ~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 420 (493)
|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|+..+-+..- .|. .++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-nvf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-NVF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-HHH
Confidence 555565555555432 3455555556666666666666666666666543211 111 111
Q ss_pred HHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHh
Q 011137 421 NILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ-GLAKEILRLQSR 483 (493)
Q Consensus 421 ~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 483 (493)
....--|- .+-.-+++++++|...|+.||.++-..|+++|.+.|-. .+..+++-.|-+
T Consensus 129 Q~~F~HYP-----~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 129 QKVFLHYP-----QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHhhCc-----hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 11111111 11122778888888888888888888888888776642 334444444444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.56 Score=41.09 Aligned_cols=140 Identities=12% Similarity=0.120 Sum_probs=66.2
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHhcCChhHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI-SYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A 226 (493)
....|++.+|..+|....... +.+...-..+..+|...|+.+.|..++..+......+.. ....-+..+.+.....+.
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~ 222 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI 222 (304)
T ss_pred hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence 444566666666666555432 222344445556666666666666666655443221111 111223333333333333
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccC
Q 011137 227 LEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVG 291 (493)
Q Consensus 227 ~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g 291 (493)
..+-.+.-. .| |...-..+...+...|+.++|.+.+-.+.+++ -.-|...-..++..+.-.|
T Consensus 223 ~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 223 QDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333333322 12 44444555556666666666655554444331 1224455555666555555
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=1 Score=38.70 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=23.8
Q ss_pred HHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 149 VSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
.+.|++++|.+.|+.+...- -+-...+.-.++.++.+.+++++|+..++++...
T Consensus 45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 34455555555555554321 0112233333444455555555555555554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.37 Score=36.40 Aligned_cols=91 Identities=18% Similarity=0.097 Sum_probs=51.2
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR-GLN--PNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~--p~~~~~~~l~~~~~~~g~~ 258 (493)
++...|+.+.|++.|.+...-.|.....||.-..++.-.|+.++|++-+++..+. |.. .--..|..-...|...|+.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3455566666666666555555555566666666666666666666666655542 211 0112344444556666777
Q ss_pred HHHHHHHHHHHHCC
Q 011137 259 EEAWRFFLEMKKRK 272 (493)
Q Consensus 259 ~~a~~~~~~~~~~~ 272 (493)
+.|..-|+..-+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 77776666666555
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.66 E-value=1.4 Score=38.74 Aligned_cols=143 Identities=10% Similarity=0.045 Sum_probs=84.5
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
......|++.+|..+|+......+.+...--.++.+|...|+.+.|..++..+...--.........-+..+.+.....+
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 34566788888888888777666667777778888888888888888888877543222122222223444444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG--GVLPSVATYNAMIQVLCKKD 326 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~ 326 (493)
...+-.+.-.. +-|...-..+...+...|+.+.|.+.+-.+.+. |.. |...-..++..+.--|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 43433333332 225555666677777777777777776666543 221 3334444555544444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.23 Score=37.42 Aligned_cols=91 Identities=16% Similarity=0.094 Sum_probs=59.0
Q ss_pred HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHH---HHHHHHHHHhccCC
Q 011137 356 GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLD---TYNILISSMFVRKK 432 (493)
Q Consensus 356 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~---~~~~li~~~~~~~~ 432 (493)
+++..|+.+.|++.|.+.+..- +-....||.-.+++.-.|+.++|++-+++..+..-..... .|..-...|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 4567788888888887777652 4466778888888877888888887777776642111222 23333344556667
Q ss_pred cccHHHHHHHHHHHHHCC
Q 011137 433 SDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 433 ~~~~~~A~~~~~~m~~~g 450 (493)
.+. |..-|+..-+.|
T Consensus 131 dd~---AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDA---ARADFEAAAQLG 145 (175)
T ss_pred hHH---HHHhHHHHHHhC
Confidence 666 667777766665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.2 Score=45.68 Aligned_cols=61 Identities=15% Similarity=0.105 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
++..+.-++.+.+++.+|++..+..+..+.. |....-.-..++...|+++.|+..|+++++
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4445555555555555555555555555322 444444445555555566666666655555
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.72 Score=35.00 Aligned_cols=140 Identities=12% Similarity=0.218 Sum_probs=73.3
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
..-.|..++..++..+.... .+..-+|-+|--....-+-+-..++++.+.+.+.-+ .+|+.....
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis------------~C~NlKrVi 76 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS------------KCGNLKRVI 76 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG------------G-S-THHHH
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch------------hhcchHHHH
Confidence 34467777788887777653 344455555544444455555566666655443211 123333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
..+-.+- .+.......+..+.+.|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 3322221 13334455666777777777777777777652 34566667777777777777777777777777666
Q ss_pred C
Q 011137 308 V 308 (493)
Q Consensus 308 ~ 308 (493)
+
T Consensus 151 ~ 151 (161)
T PF09205_consen 151 L 151 (161)
T ss_dssp -
T ss_pred h
Confidence 5
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.9 Score=40.47 Aligned_cols=152 Identities=13% Similarity=0.039 Sum_probs=87.4
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHH----HHHHHHHhcCChh
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYN----VIANGWCLVKRTN 224 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~ 224 (493)
...|++.+|-..++++.+. .+.|...++..=.++.-.|+.+.....++++.....+|...|. .+.-++...|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3456666666666666653 4556666666666777777777777777766655444543332 2334455677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE---IDVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
+|++.-++..+.+.. |..+-......+-..|+..++.++..+-...=-. .-..-|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 777777776665433 5555566666666777777777665544332000 001112222233455577777777776
Q ss_pred H
Q 011137 302 G 302 (493)
Q Consensus 302 ~ 302 (493)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.87 Score=35.81 Aligned_cols=39 Identities=10% Similarity=0.103 Sum_probs=16.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 250 KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 250 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
..+...+.......+++.+...+. .+...++.++..|++
T Consensus 15 ~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 15 ELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 333333444444444444444332 233444444444443
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.32 Score=44.44 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=66.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
...|.+.|++..|...|+.....= . |.+.-+.++.... .. .-..+++.+..++.+.+++.
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l--~-----------~~~~~~~ee~~~~-~~------~k~~~~lNlA~c~lKl~~~~ 274 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFL--E-----------YRRSFDEEEQKKA-EA------LKLACHLNLAACYLKLKEYK 274 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHh--h-----------ccccCCHHHHHHH-HH------HHHHHhhHHHHHHHhhhhHH
Confidence 346788899999998888865420 0 0011111111111 00 01224445555555555555
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH-HHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK-RARNVFDGM 303 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~ 303 (493)
+|++..++.+..+.. |+-..-.-..++...|+++.|+..|+++++.... |-..-+.|+.+-.+..+.. ...++|..|
T Consensus 275 ~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~m 352 (397)
T KOG0543|consen 275 EAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANM 352 (397)
T ss_pred HHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555544322 4445555555555555555555555555554222 3333333444333333322 234555555
Q ss_pred HH
Q 011137 304 VN 305 (493)
Q Consensus 304 ~~ 305 (493)
..
T Consensus 353 F~ 354 (397)
T KOG0543|consen 353 FA 354 (397)
T ss_pred hh
Confidence 43
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.54 Score=36.51 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
.+-.-.....+.|++++|.+.|+.+..+-+. -...+-..++.+|.+.+++++|...+++.++..-......|...+.+
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 3333444556778888888888888776321 23456667788888888888888888888765422222334444444
Q ss_pred HHc
Q 011137 183 LCK 185 (493)
Q Consensus 183 ~~~ 185 (493)
++.
T Consensus 92 L~~ 94 (142)
T PF13512_consen 92 LSY 94 (142)
T ss_pred HHH
Confidence 443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=1.5 Score=37.62 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH-
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRG--KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLK- 250 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~- 250 (493)
..+......+...+++..+...+..... ........+......+...+++..+.+.+.........+ .........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence 3444444455555555555555444432 222333344444444555555555555555554432222 111111111
Q ss_pred HHHhcCCHHHHHHHHHHH
Q 011137 251 GYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~ 268 (493)
.+...|+++.+...+.+.
T Consensus 139 ~~~~~~~~~~a~~~~~~~ 156 (291)
T COG0457 139 ALYELGDYEEALELYEKA 156 (291)
T ss_pred HHHHcCCHHHHHHHHHHH
Confidence 444555555555555554
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.49 Score=42.02 Aligned_cols=154 Identities=7% Similarity=-0.132 Sum_probs=111.5
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHH
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH---GCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
-..|.+.+|-..++++.+. .+.|.-++...=.+|.-.|+.+.-...++++... +.+....+...+.-++..+|-++
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 3467888888888888876 4467888888888999999999999999888753 22222333344455677899999
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR---GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
+|++.-++..+..+.|..+-.++...+-..|++.++.++..+-... +--.-..-|=...-.+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 9999888887777778888888889999999999999987765421 1000111222233445566899999999975
Q ss_pred H
Q 011137 268 M 268 (493)
Q Consensus 268 ~ 268 (493)
-
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.29 Score=42.32 Aligned_cols=98 Identities=13% Similarity=0.164 Sum_probs=47.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CC-CCCHHHHHHHHH
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLG--PTQKTFAIIAERYVSAGKADRAVKIFLSMHEH-GC-RQSLNSFNTILD 181 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~~~~~~~ll~ 181 (493)
|+..+.. .+.|++..|...|....+..+. -....+..|..++...|+++.|..+|..+.+. +- +--+..+-.|..
T Consensus 145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 145 YNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 5544443 3344455555555555554321 12334445555555555555555555555432 11 111234444455
Q ss_pred HHHccCCHHHHHHHHHHhhcCCC
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFK 204 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~ 204 (493)
+..+.|+.++|...|+++.+++|
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCC
Confidence 55555555555555555555444
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.34 E-value=3.4 Score=41.18 Aligned_cols=321 Identities=11% Similarity=0.104 Sum_probs=180.2
Q ss_pred HHHcCCHHHHHHHHHHHH--------hCCCCCCHHHHH-----HHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHH
Q 011137 148 YVSAGKADRAVKIFLSMH--------EHGCRQSLNSFN-----TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~-----~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 214 (493)
+.+..++++-..+.+.+. ..|++.+..-|. .+++-+...+.+..|+++-+.+.....-....|....
T Consensus 399 ~l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa 478 (829)
T KOG2280|consen 399 SLRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWA 478 (829)
T ss_pred ccccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHH
Confidence 445556666655555443 446666666554 3566777888999999988777654322345666667
Q ss_pred HHHHhcCCh--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHh
Q 011137 215 NGWCLVKRT--NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE----IDVVTYTTIVHGFG 288 (493)
Q Consensus 215 ~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~ 288 (493)
.-+.+..+. +++++.+++=..... .+..+|..+.+.....|+.+-|.++++.=...+.. .+..-+..-+.-..
T Consensus 479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai 557 (829)
T KOG2280|consen 479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI 557 (829)
T ss_pred HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence 666665322 333333333332222 35567888888888999999999988643222111 12223344555566
Q ss_pred ccCCHHHHHHHHHHHHHCC-----------CCCCHHHHHHHHH--------HHHhcCCHHHHHHHH--HHHHhC-CCCCC
Q 011137 289 VVGEIKRARNVFDGMVNGG-----------VLPSVATYNAMIQ--------VLCKKDSVENAILVF--EEMVGK-GYMPN 346 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~li~--------~~~~~~~~~~a~~~~--~~~~~~-~~~~~ 346 (493)
+.||.+....++-.+.++- .+.....|.-+++ .+.+.++-.++...| +...+. -+.+-
T Consensus 558 es~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r 637 (829)
T KOG2280|consen 558 ESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGR 637 (829)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhccc
Confidence 7777777666665554320 1111112221111 011122222222221 110000 01111
Q ss_pred hhhHHHHHHHHHhcCCHHH----------HHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC
Q 011137 347 STTYNVVIRGLCHTGEMER----------ALEFVGRMKDD-ECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP 415 (493)
Q Consensus 347 ~~~~~~li~~~~~~~~~~~----------a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p 415 (493)
.........++.+.....- -+++.+.+... +..-...+.+--+.-+...|+..+|.++-.+..- |
T Consensus 638 ~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----p 713 (829)
T KOG2280|consen 638 IPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----P 713 (829)
T ss_pred chhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC----c
Confidence 1223334444444433111 12222233222 3233344556666777788999999998888764 8
Q ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
|...|-.-+.+++..+++++ -.++.+.+. .+.-|.-++.+|.+.|+.++|.+++.+..
T Consensus 714 dKr~~wLk~~aLa~~~kwee---LekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 714 DKRLWWLKLTALADIKKWEE---LEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred chhhHHHHHHHHHhhhhHHH---HHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 99999999999999999987 445544432 24557778899999999999999886543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.16 Score=43.80 Aligned_cols=88 Identities=18% Similarity=0.140 Sum_probs=60.7
Q ss_pred CcchHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------CHHHHHHH
Q 011137 206 DVISYNVIANGWCL-----VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG----------------QIEEAWRF 264 (493)
Q Consensus 206 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----------------~~~~a~~~ 264 (493)
|..+|...+..+.. .+.++-....++.|.+-|+.-|..+|+.|++.+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44445555444433 3445555666778888888888888888888764422 22457788
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 265 FLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
+++|...|+-||..+-..|++++.+.+..
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 88888888888888888888888877753
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.51 Score=47.20 Aligned_cols=250 Identities=11% Similarity=0.070 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS--LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
......-+..+.+...++.|+.+-+. .+..++ ........+-+.+.|++++|...|-+-.....|. .++.
T Consensus 334 ek~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~ 405 (933)
T KOG2114|consen 334 EKDLETKLDILFKKNLYKVAINLAKS---QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIK 405 (933)
T ss_pred eccHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHH
Confidence 34455667777788888888776443 222222 1223333445567899999988877665554443 4556
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.++.+... .|.. ..-....+..+.+.+-.++
T Consensus 406 kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~ 481 (933)
T KOG2114|consen 406 KFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE 481 (933)
T ss_pred HhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence 667777788888888888888876 66677788999999999888777766554 3221 1113445666666777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
|..+-.+... ....... .+-..+++++|++++..+.-...-+....|.. .+. ...+++-..++-+...
T Consensus 482 a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~l~~l~kyGk---~Ll-~h~P~~t~~ili~~~t 549 (933)
T KOG2114|consen 482 AELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSLPISELLRTLNKYGK---ILL-EHDPEETMKILIELIT 549 (933)
T ss_pred HHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHH---HHH-hhChHHHHHHHHHHHh
Confidence 7666554332 2333333 34467889999888876532211112222222 222 2355666666655554
Q ss_pred CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 376 DECEPNVQTYN-----ILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 376 ~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
...++...... .+-....-.++++.-...++.|.+.
T Consensus 550 ~~~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~ 590 (933)
T KOG2114|consen 550 ELNSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI 590 (933)
T ss_pred hcCCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence 42222222221 1222223456777777777767663
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.9 Score=36.89 Aligned_cols=168 Identities=14% Similarity=0.054 Sum_probs=80.3
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 207 VISYNVIANGWCLVKRTNKALEVLKEMVDR-GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285 (493)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (493)
...+......+...+.+..+...+...... ........+......+...+++..+.+.+.......... .........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 137 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL 137 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence 345556666666667777776666666542 122244455555566666666666666666666543322 111222222
Q ss_pred -HHhccCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011137 286 -GFGVVGEIKRARNVFDGMVNGGV--LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 286 -~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 362 (493)
.+...|+++.|...+++...... ......+......+...++.+.+...+..............+..+...+...++
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 45566666666666666543211 011222222222334445555555555554443111112333444444444444
Q ss_pred HHHHHHHHHHhhh
Q 011137 363 MERALEFVGRMKD 375 (493)
Q Consensus 363 ~~~a~~~~~~~~~ 375 (493)
++.|...+.....
T Consensus 218 ~~~a~~~~~~~~~ 230 (291)
T COG0457 218 YEEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHHh
Confidence 4444444444443
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.77 Score=39.82 Aligned_cols=97 Identities=16% Similarity=0.171 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYM--PNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILI 389 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~ 389 (493)
.|+.-+..| +.|++..|...|...++.... -....+-.|..++...|+++.|..+|..+.+. ..+--+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455544433 455577777777766665211 12234555667777777777777777776654 1122345566666
Q ss_pred HHHHhcCCHHHHHHHHHHHhcC
Q 011137 390 RYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
....+.|+.++|..+|+++.+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 6667777777777777777664
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.99 E-value=2.7 Score=39.69 Aligned_cols=161 Identities=9% Similarity=0.073 Sum_probs=93.3
Q ss_pred HHH--HHHHHHHHhcC-----ChHHHHHHHHHHhhC-CCCCC-HHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q 011137 104 SSF--DHAIDLAARLR-----DYRTVWTLVHRMKSL-SLGPT-QKTFAIIAERYVSA---------GKADRAVKIFLSMH 165 (493)
Q Consensus 104 ~~~--~~li~~~~~~~-----~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~ 165 (493)
..| ...+++..... +.+.|..+|.+.... ...|+ ...|..+..++... .+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 566 66666655532 345777788887722 23333 44555544443322 23445666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHH
Q 011137 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PNLTT 244 (493)
Q Consensus 166 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~ 244 (493)
+.+ +.|......+..++.-.++++.|..+|++...-.|....+|......+.-.|+.++|.+.+++..+..+. .-...
T Consensus 332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~ 410 (458)
T PRK11906 332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVV 410 (458)
T ss_pred hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHH
Confidence 655 4566666666666666777888888887776665556666766666677778888888877776554221 11223
Q ss_pred HHHHHHHHHhcCCHHHHHHHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFL 266 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~ 266 (493)
....+..|+.. .++++++++-
T Consensus 411 ~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 411 IKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred HHHHHHHHcCC-chhhhHHHHh
Confidence 33334444433 3455555553
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.2 Score=40.06 Aligned_cols=156 Identities=8% Similarity=0.031 Sum_probs=72.6
Q ss_pred HHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHH-Hh---hcCC--CCCcchHHHHHHHHHh
Q 011137 148 YVSAGKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNLFK-VF---RGKF--KADVISYNVIANGWCL 219 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~-~~---~~~~--~~~~~~~~~l~~~~~~ 219 (493)
+....+.++|+..+.+....- ......++..+..+.++.|.+++++..-- .| .+-. ..--.+|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777766655321 11122345566666777777666554321 11 1110 0011234444455544
Q ss_pred cCChhHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhcc
Q 011137 220 VKRTNKALEVLKEMVDR-GLNP---NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-----CEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~~-g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~ 290 (493)
..++.+++.+-+.-... |..| .-....++..++.-.+.++++++.|+...+.. ......+|..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 44555554444333221 2111 11223334455555556666666665554421 112234555566666666
Q ss_pred CCHHHHHHHHHHH
Q 011137 291 GEIKRARNVFDGM 303 (493)
Q Consensus 291 g~~~~A~~~~~~~ 303 (493)
.|+++|.-+..+.
T Consensus 176 ~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 176 KDYEKALFFPCKA 188 (518)
T ss_pred HhhhHHhhhhHhH
Confidence 6666665554443
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.90 E-value=1.4 Score=34.55 Aligned_cols=9 Identities=22% Similarity=0.121 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 011137 105 SFDHAIDLA 113 (493)
Q Consensus 105 ~~~~li~~~ 113 (493)
.++.++..+
T Consensus 43 ~~~~li~ly 51 (140)
T smart00299 43 LQTKLIELY 51 (140)
T ss_pred HHHHHHHHH
Confidence 333333333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.98 Score=40.69 Aligned_cols=163 Identities=12% Similarity=-0.038 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGK-GYMP---NSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-----CEPNVQT 384 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~ 384 (493)
.|..+.+++.+..++.+++.+-..-... |..| ......++..++...+.++++++.|+...+-- .-....+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444444444444555555544433322 2111 11223334555555666777777766655431 1122345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCCHH-----HHHHHHHHHhccCCcccHHHHHHHHHHHHH----CCC
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGSG----VCLPNLD-----TYNILISSMFVRKKSDDLLVAGKLLIEMVD----RGF 451 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~-----~~~~li~~~~~~~~~~~~~~A~~~~~~m~~----~g~ 451 (493)
|..|...|.+..++++|.-+..+..+. ++.--.. ....|.-++...|+..+ |.+.-++..+ .|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~Lgd---A~e~C~Ea~klal~~Gd 241 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGD---AMECCEEAMKLALQHGD 241 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccccc---HHHHHHHHHHHHHHhCC
Confidence 667777777777777776655544332 1111111 12223445566677776 5555555432 232
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 452 MPR-KFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 452 ~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
++. ......+.+.|...|+.+.|+.-++
T Consensus 242 ra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 242 RALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred hHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 222 2233344556666777777665554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=3.7 Score=38.84 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhh---cCCCCCcchHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 189 VEKAYNLFKVFR---GKFKADVISYNVIANGWCL---------VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 189 ~~~A~~~~~~~~---~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
.+.|..+|.+.. ...|.....|..+..++.. .....+|.++.++..+.+.. |......+..+....|
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV-DGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhc
Confidence 456666777666 2222224444444333322 11223444444444444333 4555555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
+++.|..+|++....+.. ...+|........-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 555555555555554322 333343334444445555555555555443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.70 E-value=2.5 Score=42.67 Aligned_cols=180 Identities=14% Similarity=0.128 Sum_probs=115.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNL--TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 286 (493)
....-+..+++...++-|+.+-+.- +..++. .....-.+.+.+.|++++|...|-+.... ++|. .+|.-
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k 406 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK 406 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence 3455667777777788777665432 222222 22333344566788999988887766554 2222 35666
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHH
Q 011137 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA 366 (493)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 366 (493)
|....++..-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.. ..-....+..|.+.+-.++|
T Consensus 407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA 482 (933)
T ss_pred hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence 77777778888888888888875 55566778889999999888777766544 2221 12245566667777777777
Q ss_pred HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
..+-..... +......+ +-..|++++|+++++.+.
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 766655442 33343333 345688999999888764
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.086 Score=31.65 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 142 AIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 142 ~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
..+...|.+.|++++|+++|+++.+
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3344444444444444444444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.55 E-value=7.5 Score=41.13 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 452 MPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 452 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.+-......|+.++...|..+.|.++-+.+.+
T Consensus 1181 e~~r~E~~~Ll~~l~~~g~~eqa~~Lq~~f~e 1212 (1265)
T KOG1920|consen 1181 ENIRNELKRLLEVLVTFGMDEQARALQKAFDE 1212 (1265)
T ss_pred hcccHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 33445566778888888888888776554443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.42 Score=42.01 Aligned_cols=78 Identities=9% Similarity=0.140 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCCHHHHHHH
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD-----RGLNPNLTTYNIV 248 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~~~l 248 (493)
.++..++..+...|+++.+...++++....+-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45566777777777788887777777777777777788888888888888888777777654 4666666555444
Q ss_pred HHH
Q 011137 249 LKG 251 (493)
Q Consensus 249 ~~~ 251 (493)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.52 E-value=3.5 Score=37.19 Aligned_cols=133 Identities=16% Similarity=0.220 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCC-
Q 011137 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCK--KD----SVENAILVFEEMVGKGY---MPNSTTYNVVIRGLCHTGE- 362 (493)
Q Consensus 293 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~li~~~~~~~~- 362 (493)
+++...+++.|.+.|..-+..+|-+....... .. ....|..+|+.|.+... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 34566777777787777776666553333222 22 34568888888887732 2344555555543 2333
Q ss_pred ---HHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 363 ---MERALEFVGRMKDDECEPNV--QTYNILIRYFCDAGE--IERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 363 ---~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
.+.++.+|+.+.+.|+..+- .....++........ ..++.++++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 35567778888876655442 333333333322222 457888889999988888777777665443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.13 Score=30.78 Aligned_cols=37 Identities=8% Similarity=0.025 Sum_probs=16.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNV 212 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 212 (493)
+..+...|.+.|++++|+++|++..+..|.|...|..
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~ 40 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRA 40 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence 3344444444444444444444444444444444433
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=94.28 E-value=4.8 Score=37.77 Aligned_cols=358 Identities=14% Similarity=0.157 Sum_probs=163.7
Q ss_pred HHhcCChHHHHHHHHHHhhC--CCCC---C---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHH
Q 011137 113 AARLRDYRTVWTLVHRMKSL--SLGP---T---------QKTFAIIAERYVSAGKADRAVKIFLSMHEH----GCRQSLN 174 (493)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~--~~~~---~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~ 174 (493)
+-+.+++++|.+.+...... +-.+ + -..=+..+.++...|++.++..+++++... .+.-+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 34667777777777766554 2111 1 111233456677778888887777776543 3336677
Q ss_pred HHHHHHHHHHccCC---------------HHHHHHHHHHhhc-------CCCCCcchHHHHHHHHHhc--CChhHHHHHH
Q 011137 175 SFNTILDLLCKEKK---------------VEKAYNLFKVFRG-------KFKADVISYNVIANGWCLV--KRTNKALEVL 230 (493)
Q Consensus 175 ~~~~ll~~~~~~g~---------------~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~ 230 (493)
+|+.++-++.++=- ++.+.-+.++|.. .+.|.......++....-. .+..--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 77776655544211 1111111112211 1122222222222222111 1111111222
Q ss_pred HHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 231 KEMVDRGLNPNLTT-YNIVLKGYFRAGQIEEAWRFFLEMKKRKCE----IDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 231 ~~m~~~g~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
+.-...-+.|+-.. ...+...+.+ +.+++..+.+.+....+. -=..++..++....+.++...|.+.+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 22222223343321 2223333322 445555554444333211 1244566677777777888877777766554
Q ss_pred CCCCCCHHHH-------HHHHHHHHhc----CCHHHHHHHHHHHHhCCCCCChhhHHHHH---HHHHhcCC-HHHHHHHH
Q 011137 306 GGVLPSVATY-------NAMIQVLCKK----DSVENAILVFEEMVGKGYMPNSTTYNVVI---RGLCHTGE-MERALEFV 370 (493)
Q Consensus 306 ~~~~~~~~~~-------~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~li---~~~~~~~~-~~~a~~~~ 370 (493)
. .|+...- ..+-+..+.. -+...=+.+++......+. .......++ .-+.+.|. -++|+.++
T Consensus 327 l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-rqQLvh~L~~~Ak~lW~~g~~dekalnLL 403 (549)
T PF07079_consen 327 L--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-RQQLVHYLVFGAKHLWEIGQCDEKALNLL 403 (549)
T ss_pred c--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 2 2222211 1122222211 1122333344444443221 111112222 22344454 67777777
Q ss_pred HHhhhCCCCCCHHHHHHHH----HHHHh---cCCHHHHHHHHHHHhcCCCCC----CHHHHHHHHHH--HhccCCcccHH
Q 011137 371 GRMKDDECEPNVQTYNILI----RYFCD---AGEIERGLELFEKMGSGVCLP----NLDTYNILISS--MFVRKKSDDLL 437 (493)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~~~~~~~~ 437 (493)
+.+.+-. +-|...-|.+. ..|.+ ...+.+-..+-+-+.+.|++| +...-|.|.++ +...|++.+
T Consensus 404 k~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~k-- 480 (549)
T PF07079_consen 404 KLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHK-- 480 (549)
T ss_pred HHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHH--
Confidence 7776642 22333322221 12221 223444444444445556654 33344445443 345566666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 438 VAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 438 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
+.-.-.-+.+ +.|+..+|..+.-++....++++|..++..+
T Consensus 481 -c~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 481 -CYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred -HHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 4444444443 6777777777777777777788887777654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.22 E-value=2.1 Score=33.39 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKC--EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
...+.|++++|.+.|+.+..+-. +-...+-..++.+|.+.+++++|...+++.++..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh 77 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH 77 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 33455566666666666555411 1123344445555666666666666666655543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.12 E-value=6.1 Score=38.43 Aligned_cols=357 Identities=12% Similarity=0.072 Sum_probs=169.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhC-CCC-CCHHHHH
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV-SAGKADRAVKIFLSMHEH-GCR-QSLNSFN 177 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~~~ 177 (493)
..-.-|......=.+.|..+.+.++|++.... ++.+...|...+..+. ..|+.+.....|+..... |.. -....|.
T Consensus 77 l~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWd 155 (577)
T KOG1258|consen 77 LCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWD 155 (577)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHH
Confidence 34445666666666677777777777776653 4456666655554433 345666666666666542 211 1334566
Q ss_pred HHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc------CChhHHHHHHHHHHh----------------
Q 011137 178 TILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV------KRTNKALEVLKEMVD---------------- 235 (493)
Q Consensus 178 ~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~A~~~~~~m~~---------------- 235 (493)
..|.--..++++.....+++++.+...-....|..--..+.+. ...+++.++-.....
T Consensus 156 kyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~ 235 (577)
T KOG1258|consen 156 KYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEI 235 (577)
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHH
Confidence 6666666666666666666666543111111111111111111 112222221111110
Q ss_pred ----CCCCCCH--HHHHHHHH-------HHHhcCCHHHHHHHHHHHHHCC-------CCCCHHHHHHHHHHHhccCCHHH
Q 011137 236 ----RGLNPNL--TTYNIVLK-------GYFRAGQIEEAWRFFLEMKKRK-------CEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 236 ----~g~~p~~--~~~~~l~~-------~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
.+.+.+. ...+.+.. ++-..-...+..-.++.-.++- ..++..+|...+..-.+.|+.+.
T Consensus 236 ~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~ 315 (577)
T KOG1258|consen 236 GVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSR 315 (577)
T ss_pred HHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHH
Confidence 0000000 00111111 1111111222222233322221 12345677777777788888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM--PNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
+.-+|+...-- +..=...|-..+.-....|+.+-|..++....+--++ |....+.+.+ .-..|++..|..+++.+
T Consensus 316 ~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 316 VFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHH
Confidence 88888876542 1111233444444444457777777776655443222 2222222222 23357888888888888
Q ss_pred hhCCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHhcCCCCCCHHHHHHHHHH-----HhccCCcccHHHHHHHHH
Q 011137 374 KDDECEPNV-QTYNILIRYFCDAGEIERGL---ELFEKMGSGVCLPNLDTYNILISS-----MFVRKKSDDLLVAGKLLI 444 (493)
Q Consensus 374 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~p~~~~~~~li~~-----~~~~~~~~~~~~A~~~~~ 444 (493)
.+.- |+. ..-..-+....+.|+.+.+. +++....+... +......+.-- +.-.++.+. |..++.
T Consensus 393 ~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~~d~~~---a~~~l~ 465 (577)
T KOG1258|consen 393 ESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIREDADL---ARIILL 465 (577)
T ss_pred HhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHhcCHHH---HHHHHH
Confidence 7762 332 22222334445667777776 33333333211 11111111111 122344555 777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcC
Q 011137 445 EMVDRGFMPRKFTFNRVLNGLLLIG 469 (493)
Q Consensus 445 ~m~~~g~~p~~~~~~~l~~~~~~~g 469 (493)
++.+. +.++...|..++.-+...+
T Consensus 466 ~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 466 EANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred Hhhhc-CCccHHHHHHHHHHHHhCC
Confidence 77775 4566677777777555544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.80 E-value=3.8 Score=34.98 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 350 YNVVIRGLCHTGEMERALEFVGRMKDD---ECEPNVQTYNILIRYFCDAGEIERGLELF 405 (493)
Q Consensus 350 ~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 405 (493)
|...|-.+....++..|.+.++.-.+. .-.-+..+...|+.+| ..|+.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence 333344445555666666666653322 1122344555555555 345555554443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.9 Score=37.37 Aligned_cols=60 Identities=22% Similarity=0.280 Sum_probs=28.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPN--VQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
.+..+...|++.|+.+.|++.|.++.+....+. ...+-.++......|++..+...+.+.
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 344455555555555555555555544422211 223344444444555555555544444
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.2 Score=36.66 Aligned_cols=62 Identities=13% Similarity=0.216 Sum_probs=37.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN--LTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
.+..+...|++.|+.++|++.|.++.+....+. ...+-.+|+.....|++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 455666666666777777777666665433322 23445566666666666666666655544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.44 E-value=1 Score=39.69 Aligned_cols=77 Identities=14% Similarity=0.188 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-----RKCEIDVVTYTTI 283 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 283 (493)
++..++..+...|+.+.+.+.++++...... +...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4556666666777777777777777766443 666777777777777777777777776655 2555555554444
Q ss_pred HHH
Q 011137 284 VHG 286 (493)
Q Consensus 284 i~~ 286 (493)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.34 E-value=3.6 Score=33.22 Aligned_cols=25 Identities=4% Similarity=0.259 Sum_probs=11.1
Q ss_pred hhCCCCCCHHHHHHHHHHHHHcCCH
Q 011137 130 KSLSLGPTQKTFAIIAERYVSAGKA 154 (493)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~~~~g~~ 154 (493)
.+.+++++...+..+++.+.+.|++
T Consensus 21 ~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 21 NQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3344444444444444444444443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=3.5 Score=33.13 Aligned_cols=124 Identities=15% Similarity=0.159 Sum_probs=69.7
Q ss_pred hccCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHHHHHH--HHHhcCCH
Q 011137 288 GVVGEIKRARNVFDGMVNGGVLPS-VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST-TYNVVIR--GLCHTGEM 363 (493)
Q Consensus 288 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~--~~~~~~~~ 363 (493)
.+.+..++|+.-|.++.+.|...- .-....+.......|+...|...|+++-.....|-.. -...|=. .+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 344556666666666666544211 1112223334556777777777777776654444332 1112212 23456777
Q ss_pred HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 364 ERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 364 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
+.....++-+...+-+.....-..|.-+-.+.|++.+|...|+++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 777666666655543333344456666667788888888888777664
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.22 E-value=3.5 Score=32.82 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=9.2
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 011137 217 WCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~ 235 (493)
+...|++.+|..+|+++..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.16 E-value=6.3 Score=35.55 Aligned_cols=134 Identities=13% Similarity=0.153 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cC----CHHHHHHHHHHhhhCCC---CCCHHHHHHHHHHHHhcCC-
Q 011137 328 VENAILVFEEMVGKGYMPNSTTYNVVIRGLCH--TG----EMERALEFVGRMKDDEC---EPNVQTYNILIRYFCDAGE- 397 (493)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~- 397 (493)
+++...+++.|.+.|+.-+..+|-+....... .. ....|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788899999988777666553333322 22 35678899999998732 2445556666544 3333
Q ss_pred ---HHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 398 ---IERGLELFEKMGSGVCLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463 (493)
Q Consensus 398 ---~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 463 (493)
.+.++.+|+.+.+.|+..+ ..-+.+-+-++......+...++..+++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 4667888899988887754 32333333344333333334568999999999999988777655443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.15 E-value=8.2 Score=36.83 Aligned_cols=57 Identities=12% Similarity=0.132 Sum_probs=26.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
+..++.+.|+.++|.+.+++|.+.... ........|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444444555555555555555433211 122234445555555555555555555543
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.06 E-value=7.6 Score=36.17 Aligned_cols=65 Identities=12% Similarity=0.106 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP---SVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
...+|..++..+.+.|.++.|...+..+...+... +......-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45567777777777888888877777776643111 223334445556667777777777777666
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=4 Score=32.86 Aligned_cols=133 Identities=11% Similarity=0.062 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHH--H
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK-TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLN-SFN--T 178 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~--~ 178 (493)
-..|...+. +++.+..++|+.-|..+.+.|...-+. ....+.....+.|+...|+..|+++-.....|... -.. .
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344544444 345555666666666666655422111 12223334455666666666666665433222221 011 1
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcC-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGK-FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
-.-.+...|.+++.....+-+... .+-....-..|.-+-.+.|++.+|.++|..+...
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 112345566666665555544322 2223334445555556667777777777666543
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.00 E-value=4.1 Score=32.91 Aligned_cols=130 Identities=12% Similarity=0.163 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHH
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG--EIKRARNVFDGMVN 305 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~ 305 (493)
++++.+.+.|+.|+...+..+++.+.+.|++.....+ ...++-+|.......+-.+.... -..-|.+++.++..
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~ 90 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGT 90 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhh
Confidence 4444555566666666777777777776665443333 33334334333333222221111 12223333333321
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 306 GGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 306 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
.+..+++.+...|++-+|..+.+..... +......++.+..+.+|...-..+++-.
T Consensus 91 --------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 91 --------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred --------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2344555666666666666666554222 2222334455555555544433333333
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=93.00 E-value=2 Score=30.95 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHH
Q 011137 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214 (493)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 214 (493)
+..+-++.+...+..|++.+..+.+.+|.+.+++..|.++|+.++.+.......|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 33444444445555555555666666666666666666666555544333333444433
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.85 E-value=10 Score=37.04 Aligned_cols=133 Identities=12% Similarity=0.079 Sum_probs=96.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...|..+|.--....+.+.+..++..+...- +.--..|......=.+.|..+.+.++|++... +++.+...|...+.
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~ky-Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSKY-PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLA 121 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhhC-ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHH
Confidence 44556666665555555677777888877653 23344667777777788999999999999886 46777778877766
Q ss_pred HHH-ccCCHHHHHHHHHHhhcCCC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 182 LLC-KEKKVEKAYNLFKVFRGKFK---ADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 182 ~~~-~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.++ ..|+.+...+.|+....... .+...|...+..-...+++.....++++.++.
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 544 45778888888887664322 34456888888888899999999999999864
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.77 E-value=8.7 Score=36.12 Aligned_cols=138 Identities=12% Similarity=0.166 Sum_probs=73.4
Q ss_pred HHHhcCChHHHHHHHHHHhhCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--H
Q 011137 112 LAARLRDYRTVWTLVHRMKSLSLGPTQ------KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL--L 183 (493)
Q Consensus 112 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~ 183 (493)
.+-+.+++.++..+|.++.+..- .++ ..-+.++++|.. ++.+.....+....+.. | ...|-.+..+ +
T Consensus 15 ~Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 15 ILQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVA 89 (549)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHH
Confidence 45567888888888888765421 221 123345666653 34444444444444321 2 2223333332 3
Q ss_pred HccCCHHHHHHHHHHhhcCCCCC---------------cchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHHH
Q 011137 184 CKEKKVEKAYNLFKVFRGKFKAD---------------VISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNPNLTT 244 (493)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~ 244 (493)
.+.+++.+|.+.+..-.+....+ ...=+..+.++...|++.++..+++++... ...-+..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 45677888887776544331111 111234556667777777777777766543 23346666
Q ss_pred HHHHHHHHHh
Q 011137 245 YNIVLKGYFR 254 (493)
Q Consensus 245 ~~~l~~~~~~ 254 (493)
|+.++-.+.+
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 6665555443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.28 Score=27.81 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=18.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
+|..|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35677778888888888888887744
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.42 E-value=13 Score=37.22 Aligned_cols=277 Identities=15% Similarity=0.133 Sum_probs=144.5
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHH----H-HHhcCChhHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHhcC
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIAN----G-WCLVKRTNKALEVLKEMVD-------RGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~----~-~~~~~~~~~A~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~g 256 (493)
...|.++++...... +......+.. + +....+.+.|+.+|+.+.+ .| +......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g--~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG--HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhHHHHHHHHHHhhc--chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 345666666554432 2222222222 2 3456788888888888766 44 2335556666666643
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcC
Q 011137 257 -----QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV-VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC----KKD 326 (493)
Q Consensus 257 -----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~ 326 (493)
+.+.|..++......|.+ +....-..+..... ..+...|.++|....+.|.. ..+-.+..+|. -..
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r 378 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVER 378 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCC
Confidence 566788888888777644 44433333333232 24677888888888877653 22222222222 234
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH-HHHH---Hh----cCCH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL-IRYF---CD----AGEI 398 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~----~g~~ 398 (493)
+.+.|..++.+..+.| .|...--...+..+.. ++++.+.-.+..+...+.. ...+-... +... .. ..+.
T Consensus 379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccch
Confidence 6778888888888887 3332222223333333 6777777666666665433 11211111 1111 11 2245
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----CHHH
Q 011137 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVR-KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIG----NQGL 473 (493)
Q Consensus 399 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~ 473 (493)
+.+...+.+....| +......+.+.|... |-..+.+.|...+......+ ....|+ +. .+.+.| ++..
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~n-lg-~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFN-LG-YMHEHGEGIKVLHL 527 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhh-hh-hHHhcCcCcchhHH
Confidence 66666666666543 555555555555443 22222333666666666554 222221 11 111211 1567
Q ss_pred HHHHHHHHHhcC
Q 011137 474 AKEILRLQSRCG 485 (493)
Q Consensus 474 a~~~~~~~~~~g 485 (493)
|.++++.....+
T Consensus 528 a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 528 AKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHhcC
Confidence 777777666654
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=92.04 E-value=15 Score=37.01 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=20.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRM 129 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 129 (493)
.+++.-|+ .+..+.-.|.++.|..+++..
T Consensus 146 ~~~p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 146 EHDPDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp SGSHHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred ccchhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 34477787 677788889999999988544
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.99 E-value=0.37 Score=27.29 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
|+.|...|.+.|++++|+++|++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555555554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.67 E-value=2.2 Score=41.25 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=35.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 649 ~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 4555555555544332 344555666666666666666665555442 2234444444555443333
Q ss_pred HHHHHhc
Q 011137 404 LFEKMGS 410 (493)
Q Consensus 404 ~~~~~~~ 410 (493)
+-....+
T Consensus 714 la~~~~~ 720 (794)
T KOG0276|consen 714 LASLAKK 720 (794)
T ss_pred HHHHHHh
Confidence 3333333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.014 Score=46.32 Aligned_cols=84 Identities=18% Similarity=0.270 Sum_probs=39.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 318 MIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE 397 (493)
Q Consensus 318 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 397 (493)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.+...++++... +.. ...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~yd-----~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--NYD-----LDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--SS------CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--ccC-----HHHHHHHHHhcch
Confidence 344444555555555555555554434445555556666665555555555544111 111 1234444455555
Q ss_pred HHHHHHHHHHH
Q 011137 398 IERGLELFEKM 408 (493)
Q Consensus 398 ~~~a~~~~~~~ 408 (493)
+++|.-++.++
T Consensus 86 ~~~a~~Ly~~~ 96 (143)
T PF00637_consen 86 YEEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHc
Confidence 55555555443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.43 E-value=7.3 Score=34.43 Aligned_cols=116 Identities=9% Similarity=0.116 Sum_probs=81.5
Q ss_pred hHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-cC-ChHHHHHHHHHHhh-CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 83 ALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR-LR-DYRTVWTLVHRMKS-LSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
-.+|+.+|+.......+-.|...-..+++.... .+ ......++.+-+.. .+-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence 356888888654433456677787887777766 22 22333344444432 2455788888889999999999999999
Q ss_pred HHHHHHhC-CCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 011137 160 IFLSMHEH-GCRQSLNSFNTILDLLCKEKKVEKAYNLFKV 198 (493)
Q Consensus 160 ~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~ 198 (493)
+++..... +...|...|..+|......|+..-...+.+.
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88877654 4556778899999999999998887777654
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=91.41 E-value=5.5 Score=33.11 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=48.3
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHccCCHH
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH---GCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
.+.|+ +.|.+.|-.+...+.-.++.....+...|. ..+.++++.++-...+. +-.+|+..+..|...+.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 34444 355555666666655455555555555554 66777777777766532 22456777777777777777777
Q ss_pred HHH
Q 011137 191 KAY 193 (493)
Q Consensus 191 ~A~ 193 (493)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 663
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=91.35 E-value=3 Score=29.75 Aligned_cols=47 Identities=19% Similarity=0.302 Sum_probs=27.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hcC
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS-RCG 485 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~g 485 (493)
+.+-++.+....+.|+.....+.++||.+.+|+..|.++++..+ |+|
T Consensus 26 ~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~ 73 (103)
T cd00923 26 LRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG 73 (103)
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc
Confidence 44455555555566666666666666666666666666666444 444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.33 Score=27.12 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=14.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGL 402 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~ 402 (493)
+-+...|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 335556666666666666666654
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=90.71 E-value=16 Score=34.99 Aligned_cols=56 Identities=11% Similarity=0.160 Sum_probs=25.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 213 IANGWCLVKRTNKALEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+..++.+.|+.++|.+.+++|.+..... .......|+.++...+.+.++..++.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 4444444555555555555554332111 1223344555555555555555555544
|
The molecular function of this protein is uncertain. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.52 E-value=0.69 Score=25.58 Aligned_cols=27 Identities=22% Similarity=0.385 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455556666666666666666665554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.22 Score=27.84 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=8.9
Q ss_pred CcchHHHHHHHHHhcCChhHH
Q 011137 206 DVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A 226 (493)
+..+|+.+...|...|++++|
T Consensus 12 n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhh
Confidence 334444444444444444443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.50 E-value=5.1 Score=35.63 Aligned_cols=49 Identities=14% Similarity=0.253 Sum_probs=24.0
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
+.++++.++..=+..|+-||.++++.+|+.+.+.+++.+|.++...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 3344444444444445555555555555555555555555444444433
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=90.48 E-value=22 Score=36.14 Aligned_cols=230 Identities=14% Similarity=0.176 Sum_probs=95.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHh---
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG-VLPSVATYNAMIQVLCK--- 324 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~--- 324 (493)
...+.-.|+++.|++.+-. ..+...+.+++...+..|.-.+-.+... ..+.... -.|....+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445567899999988876 2233446666666665554433322222 2222110 00112557778888876
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCCHHHHH-----------HHHHH---hhhCCCCCCHH---HHH
Q 011137 325 KDSVENAILVFEEMVGKGYMPNSTTYN-VVIRGLCHTGEMERAL-----------EFVGR---MKDDECEPNVQ---TYN 386 (493)
Q Consensus 325 ~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~-----------~~~~~---~~~~~~~~~~~---~~~ 386 (493)
..+..+|.+++--+....-+.....+. .+-......++++.-+ -++++ +.... .++.. +..
T Consensus 340 ~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~-~~~~~~~~i~~ 418 (613)
T PF04097_consen 340 ITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFD-DDEDFLREIIE 418 (613)
T ss_dssp TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-S-SSSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCC-CcHHHHHHHHH
Confidence 457778888887665542211112222 2222222333332211 11111 11111 11222 223
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CC-------ccc-HHHHHHHHHHHHHCC-----CC
Q 011137 387 ILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR-KK-------SDD-LLVAGKLLIEMVDRG-----FM 452 (493)
Q Consensus 387 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~-------~~~-~~~A~~~~~~m~~~g-----~~ 452 (493)
....-+...|++++|..+|.-..+. ..-....+.++.-.... .. .++ ...|..+.+.....+ +.
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~~--d~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~~~ 496 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEEY--DKVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSKVS 496 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-H--HHHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTTS-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhhcc
Confidence 3444566788888888888877652 11122333333332222 22 233 111333333322211 11
Q ss_pred -CCHHHHHHHHH-----HHHHcCCHHHHHHHHHHHHhcCCCCc
Q 011137 453 -PRKFTFNRVLN-----GLLLIGNQGLAKEILRLQSRCGRLPR 489 (493)
Q Consensus 453 -p~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~g~~~~ 489 (493)
-+..|+..|+. .+...|++++|.+.+ .+.++.|.
T Consensus 497 ~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i---~~L~liP~ 536 (613)
T PF04097_consen 497 RKNRETFQLLLDLAEFFDLYHAGQYEQALDII---EKLDLIPL 536 (613)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH---HHTT-S-S
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH---HhCCCCCC
Confidence 12456666655 357799999996655 44556663
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.19 E-value=10 Score=31.90 Aligned_cols=27 Identities=19% Similarity=0.187 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 456 FTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
+||-.+.+-+...|+.++|..+|+...
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLai 264 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAV 264 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 355556666666777777766666544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.12 E-value=3.1 Score=36.92 Aligned_cols=102 Identities=13% Similarity=0.228 Sum_probs=54.3
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC----CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHH
Q 011137 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK----FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLT 243 (493)
Q Consensus 168 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 243 (493)
|.+....+...++..-....+++.++..+-+++.. ..++. +-.++++.+. .-+.++++.++..=++-|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 33344444444454444455666666665555432 11111 1122223222 234556666666666666666777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
+++.+|+.+.+.+++.+|.++.-.|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777766666666555443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.88 E-value=3.9 Score=33.95 Aligned_cols=71 Identities=11% Similarity=0.121 Sum_probs=33.0
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD---ECEPNVQTYNILIRYFCDAGEIERG 401 (493)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a 401 (493)
.|...|-.+...+..-++.....+...|. ..+.+++..++.+..+. +-.+|+..+..|+..|.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444443334444444444333 33445555555544433 1244455555555555555555544
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=89.53 E-value=4.4 Score=29.27 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=16.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 441 KLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 441 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
+-++.+....+.|+..+..+.+++|.+.+++..|.++|+
T Consensus 31 rglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE 69 (108)
T PF02284_consen 31 RGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILE 69 (108)
T ss_dssp HHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 333344444444444444444444544455544444444
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.51 E-value=12 Score=31.57 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
||--+.+.+...|+.++|..+|+-.+..
T Consensus 239 tyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 239 TYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 4445555555566666666666555443
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.42 E-value=25 Score=35.23 Aligned_cols=16 Identities=13% Similarity=0.154 Sum_probs=9.0
Q ss_pred cCCHHHHHHHHHHHHh
Q 011137 151 AGKADRAVKIFLSMHE 166 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~ 166 (493)
..+.+.|+..|+.+.+
T Consensus 262 ~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 262 TQDLESAIEYLKLAAE 277 (552)
T ss_pred cccHHHHHHHHHHHHH
Confidence 3456666666655544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.98 Score=24.83 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 445556666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.04 E-value=6.6 Score=28.09 Aligned_cols=43 Identities=5% Similarity=0.017 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 011137 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 200 (493)
.+-++.+...+..|++.+..+.+++|-+.+|+..|.++|+.++
T Consensus 27 rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 27 RRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444444444444444444455555554444444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.03 E-value=13 Score=36.37 Aligned_cols=150 Identities=11% Similarity=0.061 Sum_probs=77.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
-.|+++.|..++..+. ....+.+...+.+.|-.++|+++- +|... -.....+.|+++.|.++
T Consensus 598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s--------~D~d~---rFelal~lgrl~iA~~l 659 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS--------TDPDQ---RFELALKLGRLDIAFDL 659 (794)
T ss_pred hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC--------CChhh---hhhhhhhcCcHHHHHHH
Confidence 3566666655444332 123345555566666666665431 12211 11223345666666665
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC
Q 011137 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL 309 (493)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~ 309 (493)
..+.. +..-|..|.++..+.|++..|.+.|..... |..|+-.+...|+-+....+-....+.|..
T Consensus 660 a~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~ 724 (794)
T KOG0276|consen 660 AVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN 724 (794)
T ss_pred HHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc
Confidence 55443 455666667766677776666666655433 334555555556555444444444444332
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 310 PSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 310 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
|. ..-+|...|+++++.+++..-
T Consensus 725 -N~-----AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 725 -NL-----AFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred -ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence 22 222344566666666665443
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=88.12 E-value=16 Score=32.05 Aligned_cols=87 Identities=16% Similarity=0.187 Sum_probs=42.4
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK---- 185 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---- 185 (493)
|.+++..++|++++...-+--+..-+....+...-|-.|.+.+.+..+.++-.......-..+..-|..++..|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5566666666666554444333222233444555555566666666666655555443222222334444443332
Q ss_pred -cCCHHHHHHHH
Q 011137 186 -EKKVEKAYNLF 196 (493)
Q Consensus 186 -~g~~~~A~~~~ 196 (493)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 45566555444
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.02 E-value=17 Score=31.64 Aligned_cols=48 Identities=8% Similarity=0.180 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHh
Q 011137 152 GKADRAVKIFLSMHEHGCRQSL---NSFNTILDLLCKEKKVEKAYNLFKVF 199 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~ 199 (493)
.++++|+.-|++..+..-.... .....++..+.+.|++++....++++
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~ql 91 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQL 91 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 3556666666665543211111 22233445555555655555555544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.45 E-value=64 Score=37.60 Aligned_cols=316 Identities=10% Similarity=0.054 Sum_probs=152.3
Q ss_pred HhhChHHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 011137 79 LWNHALKALHFFNILSYHPTY-AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157 (493)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 157 (493)
-+..+.+|+-.++.......- .-....|..+...|+..++++...-+...-.. +...+ ..|......|+++.|
T Consensus 1395 rc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~-~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1395 RCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLY-QQILEHEASGNWADA 1468 (2382)
T ss_pred hhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHH-HHHHHHHhhccHHHH
Confidence 344456677666663111000 01222344455588888888887776664111 22222 233345567899999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHH-HHHHHhcCChhHHHHHHHHHHhC
Q 011137 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVI-ANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
...|+.+.+.+ ++....++-++......|.+....-..+-......+....|+.+ ..+--+.++++....... +.
T Consensus 1469 ~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~ 1544 (2382)
T KOG0890|consen 1469 AACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS---DR 1544 (2382)
T ss_pred HHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cc
Confidence 99999998765 34466677777777777888777765555544434444444433 233345666666666554 22
Q ss_pred CCCCCHHHHHH--HHHHHHhcC--CHHHHHHHHHHHHHCC--------CC-CCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 237 GLNPNLTTYNI--VLKGYFRAG--QIEEAWRFFLEMKKRK--------CE-IDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 237 g~~p~~~~~~~--l~~~~~~~g--~~~~a~~~~~~~~~~~--------~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
+..+|.. ++....+.. +.-...+..+.+.+.- .. .-...|..++....-..--.....++.--
T Consensus 1545 ----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~~~l~~~s 1620 (2382)
T KOG0890|consen 1545 ----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSIEELKKVS 1620 (2382)
T ss_pred ----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 2222222 222222221 1111112222222211 11 01123333333322111111111111000
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEE-MVGK----GYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 304 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~-~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
.......+...|..-+..-....+..+-+--+++ +... +.. --..+|-...+.....|.++.|...+-+..+.+
T Consensus 1621 ~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r 1700 (2382)
T KOG0890|consen 1621 YDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR 1700 (2382)
T ss_pred ccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc
Confidence 0001111122222222211111112221111111 1111 111 124567777777777899998888877777665
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
. ...+--.+......|+...|+.++++..+.
T Consensus 1701 -~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1701 -L--PEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred -c--chHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 2 345666777888889999999998887754
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=21 Score=31.95 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=7.0
Q ss_pred ChhhHHHHHHHHHhcCC
Q 011137 346 NSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~ 362 (493)
+..+-...+.++.+.|+
T Consensus 205 ~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 205 NEEIRIEAIIGLALRKD 221 (280)
T ss_pred ChHHHHHHHHHHHccCC
Confidence 33333444444444444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=87.05 E-value=30 Score=33.35 Aligned_cols=179 Identities=13% Similarity=0.093 Sum_probs=98.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.|....-+++..++.+..++-+..+..+|...| .+--.|..++.+|... ..++-..+++++.+..+ .|+..-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHH
Confidence 4566667777777777777777777777777655 3666777777777766 44566677777766543 233333344
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCc------chHHHHHHHHHhcCChhHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV------ISYNVIANGWCLVKRTNKALEVLKEMVD-RGLNPNLTTYNIVLKGY 252 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~~ 252 (493)
...|- .++...+..+|..+..++-|.. ..|..+...- ..+.+..+.+..++.. .|..--.+.+.-+-.-|
T Consensus 139 a~~yE-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYE-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHH-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 44443 3666677777766554432211 1333333211 3344555555555442 23333334444455555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 253 FRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286 (493)
Q Consensus 253 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 286 (493)
....++++|++++..+.+.+-. |..+...++..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 5666666666666666655332 44444444443
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.00 E-value=1.7 Score=23.89 Aligned_cols=26 Identities=12% Similarity=0.322 Sum_probs=10.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
|..+..+|...|++++|+..|++.++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444433
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=86.96 E-value=14 Score=29.52 Aligned_cols=19 Identities=11% Similarity=0.121 Sum_probs=9.4
Q ss_pred HHccCCHHHHHHHHHHhhc
Q 011137 183 LCKEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~ 201 (493)
+...|++.+|..+|+.+..
T Consensus 54 ~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 54 HIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHhCCHHHHHHHHHHHhc
Confidence 3444555555555555443
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=86.92 E-value=6.8 Score=36.99 Aligned_cols=121 Identities=9% Similarity=0.096 Sum_probs=79.7
Q ss_pred HHHcCCHHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 148 YVSAGKADRAVK-IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 148 ~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
-...|+...|-+ ++.-+....-.|+.....+ ..+...|+++.+...+....+.......+...+++...+.|++++|
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHH
Confidence 344566655543 4444444433444443333 3456779999998888777666666667888889999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
...-+-|....++ +...........-..|-++++.-.|+++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 9998888877666 4444433333344556677777777776654
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=86.77 E-value=39 Score=34.39 Aligned_cols=38 Identities=11% Similarity=0.111 Sum_probs=15.2
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
-+.++|++++|.++..............+...+..|..
T Consensus 120 y~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 120 YCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTT
T ss_pred HHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHh
Confidence 34444444444444433333333333344444444433
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.76 E-value=22 Score=31.51 Aligned_cols=70 Identities=9% Similarity=0.080 Sum_probs=47.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-----RKCEIDVVTY 280 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 280 (493)
++.....|..+|.+.+|.++.++....+. .+...+..++..+...|+--.+.+-++.+.+ .|+..+...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 44556677888888888888888776543 3667777888888888887666666665543 2555554443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=86.65 E-value=1.7 Score=25.23 Aligned_cols=28 Identities=29% Similarity=0.356 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4667777788888888888887777654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.48 E-value=11 Score=31.16 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=26.5
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADV-----ISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
-+.+.|++++|..-|......+++.. ..|..-..++.+.+.++.|++-..+.++.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel 163 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL 163 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc
Confidence 35566666666666665555443322 12333333444444444444444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.42 E-value=8.6 Score=31.84 Aligned_cols=90 Identities=14% Similarity=0.071 Sum_probs=51.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSL-----NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
.-+...|++++|..-|...+..- ++.. ..|..-..++.+.+.++.|+.-........+....+...-..+|-+.
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 34667788888888777777642 2221 23334445566677777776655544443333333333334556666
Q ss_pred CChhHHHHHHHHHHhC
Q 011137 221 KRTNKALEVLKEMVDR 236 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~ 236 (493)
..+++|+.-|.++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 6666666666666554
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.95 E-value=4.9 Score=38.93 Aligned_cols=131 Identities=12% Similarity=0.073 Sum_probs=89.0
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
+-+..++..|.....|-..+.|...-.+.-.|+...|.+.+.........-..+....+.....+.|....|-.++.+..
T Consensus 590 e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l 669 (886)
T KOG4507|consen 590 EIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQAL 669 (886)
T ss_pred HHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 44555555666555565566665555566688888888888877654433344456667777778888888888888877
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 270 KRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322 (493)
Q Consensus 270 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 322 (493)
... ...+-++..+.++|....+++.|++.|++..+.... +...-+.|...-
T Consensus 670 ~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~-~~~~~~~l~~i~ 720 (886)
T KOG4507|consen 670 AIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTK-CPECENSLKLIR 720 (886)
T ss_pred hhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCC-ChhhHHHHHHHH
Confidence 765 335667777888888888999999999888776332 444444444433
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=85.56 E-value=12 Score=28.89 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 415 p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
++..+--.+..++.+..+.++..+.+.++++..+.. .|+ ......|.-++.+.|++++++++++.+.+.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444455555556666666555555666666666422 222 223333444566666666666666655554
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.31 E-value=2.5 Score=24.45 Aligned_cols=25 Identities=28% Similarity=0.376 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+++.+...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444444444444444443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.04 E-value=7.3 Score=32.74 Aligned_cols=76 Identities=21% Similarity=0.259 Sum_probs=46.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHHHHH
Q 011137 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD--ECEPNVQTYNILIRY 391 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~ 391 (493)
.+.-+..+.+.+...+++...++-.+.+. .|..+-..+++.+|-.|+|++|..-++-.-.. ...+...+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455666677777777777766666532 25555666777777777777777666655443 223344555555544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.98 E-value=52 Score=34.17 Aligned_cols=222 Identities=12% Similarity=0.046 Sum_probs=109.2
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHH-HHHhccCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHH
Q 011137 253 FRAGQIEEAWRFFLEMKKRKCEIDVV-------TYTTIV-HGFGVVGEIKRARNVFDGMVNG----GVLPSVATYNAMIQ 320 (493)
Q Consensus 253 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~li-~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~li~ 320 (493)
....++++|..+..++...-..|+.. .++.+- ......|++++|.++-+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 34567778877777766542222211 222222 1234567778887777766543 12234555666677
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHH---HH--HHHHhcCCH--HHHHHHHHHhhhC---CC---CCCHHHHHH
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNV---VI--RGLCHTGEM--ERALEFVGRMKDD---EC---EPNVQTYNI 387 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li--~~~~~~~~~--~~a~~~~~~~~~~---~~---~~~~~~~~~ 387 (493)
+..-.|++++|..+..+..+..-.-+...+.. +. ..+...|+. ++.+..+...... .. .+-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 77778888888887766554422223332222 21 224455632 2223333332221 10 112234444
Q ss_pred HHHHHHhcCCHHHHHHHH----HHHhcCCCCCCHH--HHHHHHHHHhccCCcccHHHHHHHHHHHHHCCC----CCCHHH
Q 011137 388 LIRYFCDAGEIERGLELF----EKMGSGVCLPNLD--TYNILISSMFVRKKSDDLLVAGKLLIEMVDRGF----MPRKFT 457 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~----~~~~~~~~~p~~~--~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~----~p~~~~ 457 (493)
+..++.+ ++.+..-. +--......|-.. .+..|+......|+.++ |...+.++..... .++-.+
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~---A~~~l~~~~~l~~~~~~~~~~~a 659 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDK---ALAQLDELERLLLNGQYHVDYLA 659 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHHhcCCCCCchHHH
Confidence 5555544 33333222 2222211111111 12256677777888888 8888887775422 233333
Q ss_pred HHHHHH--HHHHcCCHHHHHHHHHH
Q 011137 458 FNRVLN--GLLLIGNQGLAKEILRL 480 (493)
Q Consensus 458 ~~~l~~--~~~~~g~~~~a~~~~~~ 480 (493)
-...++ .-...|+.+.+...+..
T Consensus 660 ~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 660 AAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHhhHHHhcccCCHHHHHHHHHh
Confidence 333333 23447777777666544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=84.21 E-value=0.53 Score=37.23 Aligned_cols=83 Identities=12% Similarity=0.172 Sum_probs=46.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGE 362 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~ 362 (493)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++...+++. .+..-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555566666666666666666555445566667777777777666666665551 111223345555555565
Q ss_pred HHHHHHHHHH
Q 011137 363 MERALEFVGR 372 (493)
Q Consensus 363 ~~~a~~~~~~ 372 (493)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555554444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.00 E-value=40 Score=32.15 Aligned_cols=115 Identities=11% Similarity=0.097 Sum_probs=78.3
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 86 ALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 86 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
.-++|+.++.+++. +.........+...|+++.+...+...... +.....+...+++.....|+++.|..+-+-|.
T Consensus 309 s~~~~~~lr~~~~~---p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 309 SQQLFAALRNQQQD---PVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred HHHHHHHHHhCCCC---chhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 34577777777664 344444445567889999998888776543 33567788889999999999999999988888
Q ss_pred hCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC
Q 011137 166 EHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA 205 (493)
Q Consensus 166 ~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~ 205 (493)
...++ +..+........-..|-++++.-.++++....+|
T Consensus 385 ~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~ 423 (831)
T PRK15180 385 SNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPE 423 (831)
T ss_pred ccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCCh
Confidence 66543 3343333333334456788888888877544333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=83.54 E-value=20 Score=28.25 Aligned_cols=51 Identities=10% Similarity=-0.074 Sum_probs=22.0
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.++.+++..+++.+.---|.....-..-...+...|++++|..+|++..+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 445555555555443322212222122222334455555555555555544
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=83.53 E-value=3.2 Score=22.72 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.+|..+...|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566677777778888888888777665
|
... |
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=83.51 E-value=19 Score=31.70 Aligned_cols=89 Identities=9% Similarity=0.052 Sum_probs=56.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh---
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG--- 288 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--- 288 (493)
.=|.+++..+++.+++.+.-+..+.--+.........|-.|.|.|+...+.++-....+..-.-+..-|.++++.|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V 167 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV 167 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence 34777888888888877766665432223345556666777788888877777777666533333444666665553
Q ss_pred --ccCCHHHHHHHH
Q 011137 289 --VVGEIKRARNVF 300 (493)
Q Consensus 289 --~~g~~~~A~~~~ 300 (493)
=.|.+++|+++.
T Consensus 168 LlPLG~~~eAeelv 181 (309)
T PF07163_consen 168 LLPLGHFSEAEELV 181 (309)
T ss_pred HhccccHHHHHHHH
Confidence 357777777666
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.40 E-value=32 Score=30.53 Aligned_cols=71 Identities=13% Similarity=0.163 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-----GGVLPSVATY 315 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 315 (493)
+++...+.|..+|.+.+|.++.+.....+ +.+...+-.++..+...||--.|.+-++.+.+ .|+..+...+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 45667788999999999999999998874 45888999999999999998777777776643 3665554443
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.05 E-value=12 Score=31.62 Aligned_cols=76 Identities=13% Similarity=0.127 Sum_probs=54.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCChhhHHHHHHH
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK--GYMPNSTTYNVVIRG 356 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~ 356 (493)
.+..++.+.+.+.+.+++...++-++.+. -|..+-..+++.||-.|+|++|..-++-.-.. ...+...+|..+|.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakP-tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKP-TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCC-ccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677788889999988888777543 35666777889999999999998877765544 223345567776654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.78 E-value=64 Score=33.54 Aligned_cols=224 Identities=10% Similarity=0.082 Sum_probs=116.4
Q ss_pred HccCCHHHHHHHHHHhhcCCCC-Cc-------chHHHHHH-HHHhcCChhHHHHHHHHHHhC----CCCCCHHHHHHHHH
Q 011137 184 CKEKKVEKAYNLFKVFRGKFKA-DV-------ISYNVIAN-GWCLVKRTNKALEVLKEMVDR----GLNPNLTTYNIVLK 250 (493)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~-~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~----g~~p~~~~~~~l~~ 250 (493)
....++.+|..++.++....++ +. ..|+.+-. .....|++++|+++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 3467788888888776543222 11 13444322 234478888988888776543 23345566777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHhccCCH--HHHHHHHHHHHHC--CCC----CCHHHHHH
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV-----HGFGVVGEI--KRARNVFDGMVNG--GVL----PSVATYNA 317 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-----~~~~~~g~~--~~A~~~~~~~~~~--~~~----~~~~~~~~ 317 (493)
+..-.|++++|..+..+..+..-.-+...+.... ..+...|+. .+.+..|...... .-. +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888899999988887766653222333333222 234556632 2333333333221 011 11233444
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCCCCCChhh--HHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----CCHHHHHHHHH
Q 011137 318 MIQVLCKK-DSVENAILVFEEMVGKGYMPNSTT--YNVVIRGLCHTGEMERALEFVGRMKDDECE----PNVQTYNILIR 390 (493)
Q Consensus 318 li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 390 (493)
+..++.+. +...++..-+..-......|-... +..++......|+.++|...+.++...... ++...-...+.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 44444441 112222222222222222222222 235667777889999999888887664222 22222222222
Q ss_pred --HHHhcCCHHHHHHHHHH
Q 011137 391 --YFCDAGEIERGLELFEK 407 (493)
Q Consensus 391 --~~~~~g~~~~a~~~~~~ 407 (493)
.....|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 22356787777766655
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.75 E-value=4.6 Score=21.96 Aligned_cols=29 Identities=14% Similarity=0.026 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 456 FTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 456 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
..+..+...+...|++++|++.++...+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 35667777888899999999988877664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.73 E-value=2.8 Score=25.06 Aligned_cols=27 Identities=19% Similarity=0.238 Sum_probs=21.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011137 460 RVLNGLLLIGNQGLAKEILRLQSRCGR 486 (493)
Q Consensus 460 ~l~~~~~~~g~~~~a~~~~~~~~~~g~ 486 (493)
.+..+|...|+.+.|+++++.....|-
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 466788888888888888887776554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=82.32 E-value=50 Score=31.95 Aligned_cols=179 Identities=12% Similarity=0.093 Sum_probs=89.8
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
.|.....+++..+..+..++-...+..+|...| .+-..|..++++|... .-++-..+++++.+-.-.|++.-..|..
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~ 140 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELAD 140 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHH
Confidence 344555556666666666666666666666654 3445566666666665 3444555555554433334444444444
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNP--N---LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-KCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~ 289 (493)
.|-+ ++.+.+..+|.++..+-+.- + ...|..+...- ..+.+....+...+... |...-...+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4443 56666666666655432110 0 11222222211 23445555555555433 333334445555555666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQV 321 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~ 321 (493)
..++++|++++..+.+.+-+ |..+-..++.-
T Consensus 218 ~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~ 248 (711)
T COG1747 218 NENWTEAIRILKHILEHDEK-DVWARKEIIEN 248 (711)
T ss_pred ccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence 66666666666666554322 44444444443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=82.29 E-value=37 Score=30.46 Aligned_cols=202 Identities=12% Similarity=0.031 Sum_probs=110.4
Q ss_pred CHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-----HHHHHHHHHHHHHCCCCCC
Q 011137 241 NLTTYNIVLKGYFRAGQI----EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE-----IKRARNVFDGMVNGGVLPS 311 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~----~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-----~~~A~~~~~~~~~~~~~~~ 311 (493)
|...-...+.++...|+. +++...+..+... .++..+-...+.++...+. ...+...+...... ++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D---~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFD---KS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhC---CC
Confidence 334444445555555542 3455555544332 2344444444444444332 12233333333332 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 011137 312 VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG-EMERALEFVGRMKDDECEPNVQTYNILIR 390 (493)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 390 (493)
..+-...+.++.+.++ +.+...+-.+.+. ++...-...+.++.+.+ +...+...+..+.. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 5555666777777766 4566666666653 34455555555665543 23456666666664 346667777788
Q ss_pred HHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011137 391 YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLL 466 (493)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 466 (493)
++.+.|+. .+...+-+..+.+ + .....+.++...|.. + |...+.++.+. .||..+-...+.+|.
T Consensus 215 aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~---a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 215 GLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-T---LLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-h---HHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 88888874 5555555555532 2 234566666666664 3 78888888764 457776666666553
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.16 E-value=50 Score=31.25 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=47.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 386 NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGL 465 (493)
Q Consensus 386 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 465 (493)
..|+.-|.-.|++.+|...++++.-- +--....+.+++.+.-+.|+... .++++++.-+.|+ +|.+.+-++|
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmP-fFhHEvVkkAlVm~mEkk~d~t~---~ldLLk~cf~sgl----IT~nQMtkGf 584 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMP-FFHHEVVKKALVMVMEKKGDSTM---ILDLLKECFKSGL----ITTNQMTKGF 584 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCC-cchHHHHHHHHHHHHHhcCcHHH---HHHHHHHHHhcCc----eeHHHhhhhh
Confidence 45677777788888888887776431 11245677778877777777665 6677777666553 3344444444
Q ss_pred HH
Q 011137 466 LL 467 (493)
Q Consensus 466 ~~ 467 (493)
.+
T Consensus 585 ~R 586 (645)
T KOG0403|consen 585 ER 586 (645)
T ss_pred hh
Confidence 44
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.85 E-value=5.7 Score=35.72 Aligned_cols=90 Identities=10% Similarity=-0.026 Sum_probs=55.9
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME 364 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 364 (493)
+-|.+.|.+++|+++|...+... +.+..++..-..+|.+...+..|+.=....+..+-. -...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHhhHH
Confidence 45888999999999998877642 227788888888888888888777666655543100 1122333333333345555
Q ss_pred HHHHHHHHhhhC
Q 011137 365 RALEFVGRMKDD 376 (493)
Q Consensus 365 ~a~~~~~~~~~~ 376 (493)
+|.+-++..+..
T Consensus 183 EAKkD~E~vL~L 194 (536)
T KOG4648|consen 183 EAKKDCETVLAL 194 (536)
T ss_pred HHHHhHHHHHhh
Confidence 555555555543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=80.64 E-value=1.3e+02 Score=35.49 Aligned_cols=320 Identities=10% Similarity=0.032 Sum_probs=157.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCC-CHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGP-TQKTFAII-AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
.+..+=.+.+.+.+|...++.-.....+- -...+..+ ...|..-+++|...-+...-. .+...++ -|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHH-HHHHHHh
Confidence 33345556778888888888742211111 12233333 447888888888777765411 1222233 3334566
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN-IVLKGYFRAGQIEEAWRF 264 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~ 264 (493)
.|++..|...|+.+.+..++...+++-++......|.++.+.-..+-.... ..+....++ .-+.+--+.++++.....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~ 1540 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESY 1540 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhh
Confidence 788888888888888877777778888877777777777776655554433 122222222 233444667777777666
Q ss_pred HHHHHHCCCCCCHHHHHHH--HHHHhc--cCCHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 011137 265 FLEMKKRKCEIDVVTYTTI--VHGFGV--VGEIKRARNVFDGMVNG--------GVLPS-VATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~l--i~~~~~--~g~~~~A~~~~~~~~~~--------~~~~~-~~~~~~li~~~~~~~~~~~a 331 (493)
.. .. +..+|... .....+ ..|.-.-.+..+.+.+. +..-+ ...|..++....-..-....
T Consensus 1541 l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~~~~ 1613 (2382)
T KOG0890|consen 1541 LS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELENSI 1613 (2382)
T ss_pred hh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 55 22 22222222 222211 11211111222222211 11100 12333333322211111111
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHH---HHHhcCCHHHHHHHHHHhhhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIR---GLCHTGEMERALEFVGRMKDD----EC-EPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
..+...-.......+..-|..-+. .+.+..++= +.+-+.+... +. .--..+|-...+...+.|+++.|..
T Consensus 1614 ~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epI--La~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1614 EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPI--LAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHhhccCccccccccchhHHHHHHHhchhHHHHhHH--HHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 111000000000111111211111 122211111 1111111111 11 1124578888888888999999988
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
.+-...+.+ -+..+-....-....|+... |+.++++-.+.
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~---Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELN---ALSVLQEILSK 1731 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHH---HHHHHHHHHHh
Confidence 777776654 33455566667778888888 99999998865
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=80.54 E-value=24 Score=28.86 Aligned_cols=40 Identities=30% Similarity=0.364 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
++|...|++..+ ..|+..+|+.-+.... +|-+++.++.+.
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~~------kap~lh~e~~~~ 136 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMAA------KAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHHH------THHHHHHHHHHS
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHHH------hhHHHHHHHHHH
Confidence 334444444443 2456666665555542 344555555444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=80.30 E-value=5.1 Score=21.87 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=14.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 279 TYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 279 ~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
+|..+...|...|++++|.+.|++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344455555555555555555555443
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.10 E-value=7 Score=35.19 Aligned_cols=46 Identities=15% Similarity=0.086 Sum_probs=22.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 194 (493)
|.++|.+++|+..|....... +.+.+.+..-..+|.+...+..|+.
T Consensus 107 yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~ 152 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEE 152 (536)
T ss_pred hhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHH
Confidence 555555555555555444322 2244445444555555555554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 493 | ||||
| 4g24_A | 501 | Crystal Structure Of Proteinaceous Rnase P 1 (Prorp | 2e-04 |
| >pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 98.4 bits (243), Expect = 8e-22
Identities = 37/333 (11%), Positives = 80/333 (24%), Gaps = 37/333 (11%)
Query: 52 DPRTLTQTLHCPSLHWTPQLVDQIIKRLWNHALKALHFFNILSYHPTYAHSPSSFDHAID 111
P W L KR ++ L + P + + +
Sbjct: 11 VQMGAKDATPVPCGRWAKILEKD--KRTQQMRMQRLKAKLQM---PFQSGEFKALTRRLQ 65
Query: 112 LAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ 171
+ RL + L + P ++ A + + D +
Sbjct: 66 VEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSG 125
Query: 172 SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLK 231
++ A++L L V
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHL-------------------------------LVVHH 154
Query: 232 EMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291
+ L YN V+ G+ R G +E +K D+++Y + G
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
Query: 292 EIKRA-RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTY 350
+ + M G+ ++ + ++ V +P
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274
Query: 351 NVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383
+ ++R + + +K +C Q
Sbjct: 275 SKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 85.3 bits (209), Expect = 1e-17
Identities = 20/217 (9%), Positives = 66/217 (30%), Gaps = 4/217 (1%)
Query: 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282
A + +P +L+ ++ + + +
Sbjct: 73 KQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLA 132
Query: 283 IVHGFGVVGEIKRARNVFD---GMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339
+ ++ A ++ G L ++ YNA++ ++ + + + V +
Sbjct: 133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVK 192
Query: 340 GKGYMPNSTTYNVVIRGLCHTGEMERALE-FVGRMKDDECEPNVQTYNILIRYFCDAGEI 398
G P+ +Y ++ + + +E + +M + + +L+ A +
Sbjct: 193 DAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252
Query: 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDD 435
+ ++ LP + L+ ++ +
Sbjct: 253 KAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVS 289
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.2 bits (183), Expect = 2e-14
Identities = 22/184 (11%), Positives = 52/184 (28%), Gaps = 5/184 (2%)
Query: 310 PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERA--- 366
P ++Q K S++ + + T ++ A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 367 LEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426
L + + YN ++ + G + + + + P+L +Y +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486
M ++ D + L +M G + +L+ ++ S +
Sbjct: 210 MG--RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQ 267
Query: 487 LPRQ 490
LP
Sbjct: 268 LPPP 271
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 2e-06
Identities = 29/265 (10%), Positives = 61/265 (23%), Gaps = 48/265 (18%)
Query: 27 TTSPAPLPPAAADPAALASLILTSTDPRTLTQTLHCPSLHWTPQ----LVDQIIKRLWNH 82
T P + A T P + + L P V+Q +
Sbjct: 61 TRRLQVEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQ 120
Query: 83 ALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142
A + +L++ + A L H + T +
Sbjct: 121 AQLSGQQQRLLAFFKCCLLT-DQLPLAHHLLVVH----------HGQRQKRKLLTLDMYN 169
Query: 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202
+ + G V + + + G L S+ L + ++ +
Sbjct: 170 AVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGT---------- 219
Query: 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262
L++M GL ++L RA ++
Sbjct: 220 -----------------------IERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256
Query: 263 RFFLEMKKRKCEIDVVTYTTIVHGF 287
+ V + ++
Sbjct: 257 KVKPTFSLPPQLPPPVNTSKLLRDV 281
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 2e-07
Identities = 58/393 (14%), Positives = 105/393 (26%), Gaps = 146/393 (37%)
Query: 162 LSMHEHGCRQSLNSF--NTILDLLCKE---------------------KKVEKAYNLFKV 198
H++ + L+ F + + CK+ V LF
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 199 FRGK-------FKADVIS--YNVIANGWCLVKR-TNKALEVLKEMVDRGLNPN--LTTYN 246
K F +V+ Y + + +R + + E DR N N YN
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH---GFG---VVGEIKRARNVF 300
+ R + + LE++ +V+ + G G V ++ + V
Sbjct: 131 VS-----RLQPYLKLRQALLELRP---AKNVL-----IDGVLGSGKTWVALDVCLSYKVQ 177
Query: 301 DGMVNGGV--LPSVATYN------AMIQVLCKK---------DSVENAILVFEEMVGKGY 343
M + + L ++ N M+Q L + D N L + +
Sbjct: 178 CKM-DFKIFWL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAE-- 233
Query: 344 MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403
+R L + E L + + F +
Sbjct: 234 ----------LRRLLKSKPYENCLLVL----LNVQNAKA------WNAF-NLS------- 265
Query: 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSD-DLLVAGK---LLIEMVDRGFMPRKFTFN 459
C IL+++ R K D L A + ++ P +
Sbjct: 266 ---------C-------KILLTT---RFKQVTDFLSAATTTHISLDHHSMTLTPDE---- 302
Query: 460 RVLNGLLLIGNQGLAKEILR--LQSRCGRLPRQ 490
K +L L R LPR+
Sbjct: 303 --------------VKSLLLKYLDCRPQDLPRE 321
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 5e-05
Identities = 32/214 (14%), Positives = 68/214 (31%), Gaps = 66/214 (30%)
Query: 46 LILTS----TDPRTLTQTLHCPSLHWTPQLVDQIIKRL---W-NHALKALHFFNILSYHP 97
L+ T TD + T H H + L +K L + + + L P
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL---------P 319
Query: 98 TYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRA 157
+ + +I +A +RD W + ++V+ K
Sbjct: 320 REVLTTNPRRLSI-IAESIRDGLATW---------------DNW-----KHVNCDKLTTI 358
Query: 158 VKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANG 216
++ L++L + + K ++ VF I +++
Sbjct: 359 IESS------------------LNVL-EPAEYRKMFDRLSVFP----PSAHIPTILLSLI 395
Query: 217 WCLVKRTNKALEVLKEMVDRGL---NPNLTTYNI 247
W V +++ + V+ ++ L P +T +I
Sbjct: 396 WFDVIKSD-VMVVVNKLHKYSLVEKQPKESTISI 428
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 493 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.91 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.86 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.85 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.84 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.82 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.81 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.75 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.74 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.71 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.71 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.7 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.66 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.66 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.63 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.59 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.59 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.55 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.53 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.53 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.52 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.5 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.49 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.48 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.45 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.44 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.38 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.37 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.33 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.31 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.28 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.26 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.22 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.18 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.14 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.14 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.13 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.1 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.05 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.04 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.04 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.02 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.02 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.97 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.97 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.96 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.96 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.94 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.92 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.92 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.88 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.82 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.78 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.76 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.76 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.76 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.74 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.74 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.73 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.72 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.71 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.69 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.69 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.68 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.68 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.68 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.68 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.68 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.68 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.67 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.64 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.62 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.59 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.59 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.58 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.57 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.53 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.52 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.52 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.51 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.5 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.48 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.44 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.43 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.42 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.41 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.4 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.4 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.39 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.38 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.38 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.38 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.36 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.36 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.35 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.34 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.32 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.3 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.29 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.28 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.23 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.22 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.18 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.17 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.15 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.15 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.14 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.13 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.11 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.11 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.1 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.09 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.08 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.05 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.99 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.95 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.92 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.91 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.91 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.9 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.87 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.8 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.77 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.76 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.75 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.69 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.66 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.64 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.64 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.56 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.54 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.37 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.31 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 97.06 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.02 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.82 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.79 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.76 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.7 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.68 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.67 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.65 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.62 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.59 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.25 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.22 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.17 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.08 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.98 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.9 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.89 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.78 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.55 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.52 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.5 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.49 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.34 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.12 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 93.8 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.76 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.7 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.25 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.83 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.62 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.95 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.79 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 91.62 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.45 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 91.26 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 91.18 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 90.97 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 88.87 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.86 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 88.72 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.03 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.08 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.71 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.45 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 84.43 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.71 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.28 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 82.53 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 81.8 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.53 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 80.91 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.8 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 80.49 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 80.02 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-35 Score=291.25 Aligned_cols=400 Identities=12% Similarity=0.003 Sum_probs=300.7
Q ss_pred HHHHHHHHh--hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011137 72 VDQIIKRLW--NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149 (493)
Q Consensus 72 ~~~~l~~~~--~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (493)
+..++..+. .+++.|+.+|+.+... .|+..++..++..|.+.|++++|..+|+.+... +++..++..++.+|.
T Consensus 87 ~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 87 LRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHH
Confidence 344444332 3456677777666532 235566666777777777777777777666432 356666666666677
Q ss_pred HcCCHHHHHHHHHHHHhC---------------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC-----------
Q 011137 150 SAGKADRAVKIFLSMHEH---------------GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF----------- 203 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~----------- 203 (493)
+.|++++|+++|+++... +.+.+..+|+.++.+|.+.|++++|.++|+++....
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 777777776666642211 122346666666666666666666666666553221
Q ss_pred ------------------------------------------------------------CCCcchHHHHHHHHHhcCCh
Q 011137 204 ------------------------------------------------------------KADVISYNVIANGWCLVKRT 223 (493)
Q Consensus 204 ------------------------------------------------------------~~~~~~~~~l~~~~~~~~~~ 223 (493)
+++..+|+.++.+|.+.|++
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCH
T ss_pred HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCH
Confidence 35667777888888888888
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
++|.++|+++.+.+.. +..++..++.++.+.|++++|.++++++.+.. +.+..++..++.+|.+.|++++|.++|+++
T Consensus 322 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 322 IDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8888888888766543 66677888888888888888888888887653 347888888999999999999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 011137 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383 (493)
Q Consensus 304 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 383 (493)
.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++.+.. +.+..
T Consensus 400 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~ 476 (597)
T 2xpi_A 400 STMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPL 476 (597)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 8743 23677899999999999999999999999887643 377888899999999999999999999998764 45788
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCC--HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHH
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGSG----VCLPN--LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 457 (493)
+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|...|++++ |.+.++++.+.+ ..+..+
T Consensus 477 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-p~~~~~ 552 (597)
T 2xpi_A 477 LLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDA---AIDALNQGLLLS-TNDANV 552 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHS-SCCHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHhC-CCChHH
Confidence 8999999999999999999999988775 55676 7899999999999999998 999999988764 346888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 458 FNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
|..+..+|...|++++|.++++.+.+..
T Consensus 553 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 553 HTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999998887753
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-35 Score=294.16 Aligned_cols=373 Identities=11% Similarity=-0.011 Sum_probs=315.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|+.+|+.+... +++..+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 57889999999999999999999999999864 468899999999999999999999999998653 67899999999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCC----------------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKF----------------KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN----- 239 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~----- 239 (493)
.+|.+.|++++|.++|+++.... +.+..+|+.++.+|.+.|++++|.++|++|.+.+..
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~ 237 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAF 237 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHH
Confidence 99999999999999998533222 335789999999999999999999999998754321
Q ss_pred -----------------------------------------------------------------CCHHHHHHHHHHHHh
Q 011137 240 -----------------------------------------------------------------PNLTTYNIVLKGYFR 254 (493)
Q Consensus 240 -----------------------------------------------------------------p~~~~~~~l~~~~~~ 254 (493)
++..++..++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 456677777788888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 011137 255 AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILV 334 (493)
Q Consensus 255 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 334 (493)
.|++++|.++|+++.+.+.. +..++..++.+|.+.|++++|.++++++.+.. +.+..+|+.++..|.+.|++++|.++
T Consensus 318 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 395 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY 395 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence 88888888888888776533 66778888888888888888888888887543 34678888999999999999999999
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC
Q 011137 335 FEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL 414 (493)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 414 (493)
|+++.+... .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.+|.+.|++++|.++|+++.+.. +
T Consensus 396 ~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~ 472 (597)
T 2xpi_A 396 FSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-Q 472 (597)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 999887532 357789999999999999999999999998774 5578889999999999999999999999998752 3
Q ss_pred CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR----GFMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 415 p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~----g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
.+..+|+.++..|.+.|++++ |.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++.+.+.+
T Consensus 473 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 473 YDPLLLNELGVVAFNKSDMQT---AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp CCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHhCCHHH---HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 478899999999999999998 99999998875 66787 7899999999999999999999998887764
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=255.81 Aligned_cols=186 Identities=16% Similarity=0.206 Sum_probs=112.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ---------IEEAWRFFLEMKKRKCEIDVVT 279 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~~ 279 (493)
.++.+|++|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.+. +++|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 4556666666666666666666666666666666666666666665443 4555556666655555556666
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH 359 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 359 (493)
|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 66666666666666666666666655555556666666666666666666666666666555566666666666666666
Q ss_pred cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 011137 360 TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394 (493)
Q Consensus 360 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (493)
.|++++|.+++++|.+.+..|+..||+.++..|+.
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 66666666666666555555565566555555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-28 Score=229.15 Aligned_cols=377 Identities=11% Similarity=0.027 Sum_probs=315.3
Q ss_pred HhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011137 79 LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 158 (493)
-..+.+.|++.++.+.... |.+...+..+...+.+.|++++|...++...+.. +.+..+|..+...|.+.|++++|+
T Consensus 11 ~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 11 QAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 3467788998888775543 4577788888888999999999999999888764 367889999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
+.|+++.+.. +.+...|..+..++.+.|++++|.+.|+++....|.+...+..+...+...|++++|.+.|+++.+...
T Consensus 88 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 166 (388)
T 1w3b_A 88 EHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166 (388)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 9999998764 455678889999999999999999999988776666777888899999999999999999999987644
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318 (493)
Q Consensus 239 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 318 (493)
. +..+|..+...+.+.|++++|...|+++.+.+.. +...+..+...+...|++++|+..|++..+... .+..++..+
T Consensus 167 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 243 (388)
T 1w3b_A 167 N-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNL 243 (388)
T ss_dssp T-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHHHHHHH
Confidence 3 5788899999999999999999999999887543 678888899999999999999999999887532 357788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEI 398 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 398 (493)
..+|.+.|++++|...++++.+.+.. +..++..+..++.+.|++++|...++++.+.. +.+..++..+...+.+.|++
T Consensus 244 ~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 321 (388)
T 1w3b_A 244 ACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNI 321 (388)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999999887432 56788889999999999999999999998864 66788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 011137 399 ERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGN 470 (493)
Q Consensus 399 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 470 (493)
++|.+.++++.+. .+.+..++..+..++...|++++ |.+.++++.+. .|+ ...|..+...+...|+
T Consensus 322 ~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 322 EEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQE---ALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHH---HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence 9999999999875 23467889999999999999999 99999999874 555 6667767666666553
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-31 Score=255.76 Aligned_cols=205 Identities=17% Similarity=0.297 Sum_probs=128.6
Q ss_pred HHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------HH
Q 011137 225 KALEVLKEMVDRGLNPNL-TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE---------IK 294 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~ 294 (493)
.+..+.+++.+.+..... ..++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344455555555544332 34666677777777777777777777777777777777777777765543 56
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 295 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
.|.++|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc
Q 011137 375 DDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV 429 (493)
Q Consensus 375 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 429 (493)
+.|+.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|..
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666665543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.9e-28 Score=231.70 Aligned_cols=364 Identities=11% Similarity=0.060 Sum_probs=321.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 188 (493)
+...+.+.|++++|.+.++.+.+..+ .+...+..+...+...|++++|...++...+.. +.+...|..+..++.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34567889999999999999887653 567788888899999999999999999988764 6678899999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+++|...|+++....|.+..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++
T Consensus 83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 161 (388)
T 1w3b_A 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 999999999988776777788999999999999999999999999986543 5567888899999999999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011137 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (493)
.+... .+..+|..+...+...|++++|+..|+++.+.+. .+...|..+...+...|++++|...+++..+... .+..
T Consensus 162 l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~ 238 (388)
T 1w3b_A 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CCHH
Confidence 88743 3688999999999999999999999999988643 3677899999999999999999999999987643 2578
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
++..+..++...|++++|...++++.+.. +.+..+|..+...+.+.|++++|.+.|+++.+. .+.+..+|..+...+.
T Consensus 239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~ 316 (388)
T 1w3b_A 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHH
Confidence 89999999999999999999999999874 446889999999999999999999999999886 3457899999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 429 VRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
..|++++ |.+.++++.+.. ..+..++..+...+.+.|++++|.+.++.+.+.
T Consensus 317 ~~g~~~~---A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 317 EQGNIEE---AVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHH---HHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HcCCHHH---HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999 999999999752 344788999999999999999999999988764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.2e-24 Score=205.40 Aligned_cols=360 Identities=9% Similarity=0.036 Sum_probs=292.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.++..+..+...+.+.|++++|..+|+.+....+ .+..++..+..++...|++++|+..|+++.+.+ +.+..++..+
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 34678899999999999999999999999987643 578899999999999999999999999999865 4568889999
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCc---chHHHHH------------HHHHhcCChhHHHHHHHHHHhCCCCCCHHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADV---ISYNVIA------------NGWCLVKRTNKALEVLKEMVDRGLNPNLTT 244 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~------------~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 244 (493)
..+|.+.|++++|...|+++....+.+. ..+..++ ..+...|++++|+..|+++.+.... +..+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~ 179 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAEL 179 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHH
Confidence 9999999999999999999988766666 6666664 4488999999999999999876543 7788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH------
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM------ 318 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------ 318 (493)
+..++.+|.+.|++++|.+.++++.+... .+..++..+..+|...|++++|+..|+++.+... .+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~~~~~~~~ 257 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKL 257 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHH
Confidence 99999999999999999999999988643 4788999999999999999999999999987532 244455444
Q ss_pred ------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 011137 319 ------IQVLCKKDSVENAILVFEEMVGKGYMPN-----STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNI 387 (493)
Q Consensus 319 ------i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 387 (493)
...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|+..++++.+.. +.+...|..
T Consensus 258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~ 334 (450)
T 2y4t_A 258 NKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKD 334 (450)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 788999999999999999998853 33 3478888999999999999999999998763 457899999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCC-CHHHHHHHHH------------HHhccC-----CcccHHHHHHHHHH-HHH
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGVCLP-NLDTYNILIS------------SMFVRK-----KSDDLLVAGKLLIE-MVD 448 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~li~------------~~~~~~-----~~~~~~~A~~~~~~-m~~ 448 (493)
+..+|...|++++|...++++.+. .| +...+..+.. .|...| +.++ +.+.+++ ..+
T Consensus 335 l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~---~~~~y~~~~l~ 409 (450)
T 2y4t_A 335 RAEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQE---IIKAYRKLALQ 409 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTH---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHH---HHHHHHHHHHH
Confidence 999999999999999999999885 34 4666666663 344444 3344 6777776 333
Q ss_pred CCCCCC----H-------HHHHHHHHHHHHcCCHHHH
Q 011137 449 RGFMPR----K-------FTFNRVLNGLLLIGNQGLA 474 (493)
Q Consensus 449 ~g~~p~----~-------~~~~~l~~~~~~~g~~~~a 474 (493)
. .|| . ..+..+..+|...|+.+.+
T Consensus 410 ~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 410 W--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp S--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred h--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 2 333 2 2566666666666665543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-24 Score=211.05 Aligned_cols=392 Identities=11% Similarity=-0.006 Sum_probs=292.8
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
..+...|+..|+.+.... |++..|..+..++.+.|++++|...++++.+.++ .+..++..+..++...|++++|+.
T Consensus 19 ~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~ 94 (514)
T 2gw1_A 19 NKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRASANEGLGKFADAMF 94 (514)
T ss_dssp TSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHHHHHHHhhHHHHHH
Confidence 345677777777775543 3677777777777777777777777777776543 456677777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHh----------------------------------hcCC--
Q 011137 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVF----------------------------------RGKF-- 203 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~----------------------------------~~~~-- 203 (493)
.|+++.+.+ +++......++..+........+.+.+..+ ....
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (514)
T 2gw1_A 95 DLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKP 173 (514)
T ss_dssp HHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCC
T ss_pred HHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCH
Confidence 777777654 334444444444333322222211111000 0000
Q ss_pred ---------CCCcchHHHHHHHHHh---cCChhHHHHHHHHHHh-----CCCC--------CCHHHHHHHHHHHHhcCCH
Q 011137 204 ---------KADVISYNVIANGWCL---VKRTNKALEVLKEMVD-----RGLN--------PNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 204 ---------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~-----~g~~--------p~~~~~~~l~~~~~~~g~~ 258 (493)
+.+...+......+.. .|++++|..+|+++.+ .... .+..++..+...+...|++
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (514)
T 2gw1_A 174 ELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDP 253 (514)
T ss_dssp CCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCH
Confidence 1123344455554554 8999999999999987 3111 2346788889999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
++|...++++.+.... ...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++
T Consensus 254 ~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 330 (514)
T 2gw1_A 254 LGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKDFDKA 330 (514)
T ss_dssp HHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999999887544 88899999999999999999999999988643 36778899999999999999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC-CC-
Q 011137 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCL-PN- 416 (493)
Q Consensus 339 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-p~- 416 (493)
.+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++|...++++.+.... ++
T Consensus 331 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 408 (514)
T 2gw1_A 331 KELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGI 408 (514)
T ss_dssp HHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSC
T ss_pred HHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchH
Confidence 887433 56788889999999999999999999998763 446778999999999999999999999998764211 11
Q ss_pred ---HHHHHHHHHHHhc---cCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 417 ---LDTYNILISSMFV---RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 417 ---~~~~~~li~~~~~---~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
...|..+...+.. .|++++ |...++++.+.. ..+..++..+...+...|++++|.+.++...+..
T Consensus 409 ~~~~~~~~~l~~~~~~~~~~~~~~~---A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 409 YVGIAPLVGKATLLTRNPTVENFIE---ATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp SSCSHHHHHHHHHHHTSCCTTHHHH---HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhcCCHHH---HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 3488889999999 899998 999999998753 3457788889999999999999999999887764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-23 Score=198.88 Aligned_cols=314 Identities=9% Similarity=0.036 Sum_probs=267.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
.+...+..+...+.+.|++++|+.+|+++.+.. +.+...+..+..++...|++++|...|+++....+.+..++..++.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 467789999999999999999999999998764 5678899999999999999999999999988877778889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH---HHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNL---TTYNIV------------LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 280 (493)
.|.+.|++++|.+.|+++.+.... +. ..+..+ ...+...|++++|...++++.+... .+..++
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 180 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELR 180 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHH
Confidence 999999999999999999986433 33 455544 4458899999999999999988743 478899
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH-------
Q 011137 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV------- 353 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------- 353 (493)
..+..+|.+.|++++|+++|+++.+.. +.+..++..+..+|...|++++|...++++.+.... +...+..+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 999999999999999999999998753 347889999999999999999999999999876322 34444444
Q ss_pred -----HHHHHhcCCHHHHHHHHHHhhhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHH
Q 011137 354 -----IRGLCHTGEMERALEFVGRMKDDECEPN-----VQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNIL 423 (493)
Q Consensus 354 -----i~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 423 (493)
...+.+.|++++|...|+++.+. .|+ ...+..+...+.+.|++++|...++++.+.. +.+...|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 78899999999999999999885 333 4578899999999999999999999998742 3368999999
Q ss_pred HHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 011137 424 ISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVL 462 (493)
Q Consensus 424 i~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~ 462 (493)
..+|...|++++ |...++++++. .|+ ...+..+.
T Consensus 336 ~~~~~~~~~~~~---A~~~~~~al~~--~p~~~~~~~~l~ 370 (450)
T 2y4t_A 336 AEAYLIEEMYDE---AIQDYETAQEH--NENDQQIREGLE 370 (450)
T ss_dssp HHHHHHTTCHHH---HHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred HHHHHHhcCHHH---HHHHHHHHHHh--CcchHHHHHHHH
Confidence 999999999999 99999999984 566 45555554
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-22 Score=197.58 Aligned_cols=365 Identities=11% Similarity=-0.019 Sum_probs=280.7
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
..+.+.|+..|+.+.... |.+...|..+..++.+.|++++|...|+.+...+. ++......++..+........+.+
T Consensus 52 ~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 128 (514)
T 2gw1_A 52 VGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKE 128 (514)
T ss_dssp HTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTT
T ss_pred HhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHH
Confidence 467899999999886543 55789999999999999999999999999988764 344444444444433332222222
Q ss_pred HHHHHHh-----------------------------------CCC---------CCCHHHHHHHHHHHHc---cCCHHHH
Q 011137 160 IFLSMHE-----------------------------------HGC---------RQSLNSFNTILDLLCK---EKKVEKA 192 (493)
Q Consensus 160 ~~~~~~~-----------------------------------~~~---------~~~~~~~~~ll~~~~~---~g~~~~A 192 (493)
.+..+.. ... +.+...+......+.. .|++++|
T Consensus 129 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 208 (514)
T 2gw1_A 129 KFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKA 208 (514)
T ss_dssp C---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHH
T ss_pred HHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHH
Confidence 2211100 000 1124444444444554 8999999
Q ss_pred HHHHHHhhc-----C--C-------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 193 YNLFKVFRG-----K--F-------KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 193 ~~~~~~~~~-----~--~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
...|+++.. . . +.+..++..+...+...|++++|...++++.+.... ...+..+..++...|++
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~ 286 (514)
T 2gw1_A 209 DESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDS 286 (514)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCH
Confidence 999988765 2 1 234567888999999999999999999999876544 78888999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
++|...++++.+.... +..++..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++
T Consensus 287 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 287 TEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp TTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999887443 677889999999999999999999999988643 36778888999999999999999999998
Q ss_pred HhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhc
Q 011137 339 VGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-EPN----VQTYNILIRYFCD---AGEIERGLELFEKMGS 410 (493)
Q Consensus 339 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~ 410 (493)
.+... .+...+..+...+...|++++|...++++.+... .++ ...+..+...+.. .|++++|...++++.+
T Consensus 365 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~ 443 (514)
T 2gw1_A 365 KRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASK 443 (514)
T ss_dssp HHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence 87632 2567888899999999999999999999876521 111 3488899999999 9999999999999987
Q ss_pred CCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 411 GVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTF 458 (493)
Q Consensus 411 ~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 458 (493)
.. +.+..++..+...+...|++++ |...++++.+. .|+....
T Consensus 444 ~~-~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~--~~~~~~~ 485 (514)
T 2gw1_A 444 LD-PRSEQAKIGLAQMKLQQEDIDE---AITLFEESADL--ARTMEEK 485 (514)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH--CSSHHHH
T ss_pred hC-cccHHHHHHHHHHHHHhcCHHH---HHHHHHHHHHh--ccccHHH
Confidence 52 3367888999999999999999 99999999985 5664443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-21 Score=193.59 Aligned_cols=387 Identities=10% Similarity=0.023 Sum_probs=280.0
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.+.+.|+..|+.+.... |.++..|..+...+.+.|++++|...++++...++ .+..++..+..++...|++++|+..
T Consensus 39 g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 39 KNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence 45677888888876543 45778888888888888888888888888877653 4677888888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCC-------CCCcc-------------------------
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKF-------KADVI------------------------- 208 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~------------------------- 208 (493)
|+.+.. .|+. ....+..+...+....|...++.+.... .|+..
T Consensus 116 ~~~~~~---~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (537)
T 3fp2_A 116 LSVLSL---NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD 190 (537)
T ss_dssp HHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred HHHHhc---CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence 863322 1221 1222333444445556666666553321 01100
Q ss_pred -----hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 209 -----SYNVIANGWCL--------VKRTNKALEVLKEMVDRGLNPN-------LTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 209 -----~~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
....+...+.. .|++++|..+++++.+.... + ..++..+...+...|++++|.+.++++
T Consensus 191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~ 269 (537)
T 3fp2_A 191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES 269 (537)
T ss_dssp SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 12222222221 24788999999998876433 2 235677778888899999999999999
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011137 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (493)
.+.. |+...+..+...+...|++++|.+.|+++.+... .+..++..+...+...|++++|...++++.+.... +..
T Consensus 270 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~ 345 (537)
T 3fp2_A 270 INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVY 345 (537)
T ss_dssp HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSH
T ss_pred HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH
Confidence 8864 3478888899999999999999999999887643 36778899999999999999999999998876433 567
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC-----CCCCHHHHHHH
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGV-----CLPNLDTYNIL 423 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~p~~~~~~~l 423 (493)
.+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+.. .......+...
T Consensus 346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 424 (537)
T 3fp2_A 346 PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK 424 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence 88889999999999999999999998864 4567788899999999999999999999886642 11122234444
Q ss_pred HHHHhcc----------CCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q 011137 424 ISSMFVR----------KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 424 i~~~~~~----------~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 485 (493)
...+... |++++ |...++++.+.. ..+...+..+...+...|++++|.+.++...+..
T Consensus 425 a~~~~~~~~~~~~~~~~~~~~~---A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 425 ATILARQSSQDPTQLDEEKFNA---AIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHTC----CCHHHHHH---HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhhccchhhhHhHHHH---HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 5666666 88888 999999998753 3457788889999999999999999999887754
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-20 Score=174.75 Aligned_cols=302 Identities=10% Similarity=0.027 Sum_probs=188.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
++..+..+...+.+.|++++|...|+++.+..+ .+..++..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 355677777888888888888888888877643 467788888888888888888888888887653 446677788888
Q ss_pred HHHccCCHHHHHHHHHHhhcCCC---CCcchHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFK---ADVISYNVI------------ANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 246 (493)
++...|++++|...|++.....+ .+...+..+ ...+...|++++|.+.++++.+.... +...+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 158 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE 158 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence 88888888888888888776655 455555554 45666666666666666666654332 455666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHH----------
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYN---------- 316 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---------- 316 (493)
.+..++...|++++|...++++.+.. +.+..++..+...+...|++++|...|++..+... .+...+.
T Consensus 159 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 159 LRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHH
Confidence 66666666666666666666666653 23556666666666666666666666666655321 1222222
Q ss_pred --HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 011137 317 --AMIQVLCKKDSVENAILVFEEMVGKGYMPNS----TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390 (493)
Q Consensus 317 --~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 390 (493)
.+...+.+.|++++|...++++.+.... +. ..+..+..++...|++++|...++.+.+.. +.+...+..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 1233455555555555555555543211 11 112334445555555555555555555442 234555555555
Q ss_pred HHHhcCCHHHHHHHHHHHhc
Q 011137 391 YFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 391 ~~~~~g~~~~a~~~~~~~~~ 410 (493)
.+...|++++|.+.|+++.+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55555555555555555555
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.8e-20 Score=172.39 Aligned_cols=319 Identities=8% Similarity=0.015 Sum_probs=260.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...|++.....+.+...|..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 45678888999999999999999999998764 55788999999999999999999999999887767788899999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCC--CCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLN--PNLTTYNIV------------LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~--p~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 282 (493)
+...|++++|.+.++++.+.... .+...+..+ ...+...|++++|.+.++++.+... .+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHH
Confidence 99999999999999999876430 134444444 5788899999999999999988744 47888999
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH-----------
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN----------- 351 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 351 (493)
+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...+.... +...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~ 237 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKL 237 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHH
Confidence 9999999999999999999998864 347788999999999999999999999999876322 333332
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 011137 352 -VVIRGLCHTGEMERALEFVGRMKDDECEPNV----QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISS 426 (493)
Q Consensus 352 -~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 426 (493)
.+...+.+.|++++|...++++.+.. +.+. ..+..+...+...|++++|...+++..+.. +.+...|..+...
T Consensus 238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 238 IESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEA 315 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 23566888999999999999998864 2233 335567888999999999999999998852 3378899999999
Q ss_pred HhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 011137 427 MFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLL 466 (493)
Q Consensus 427 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 466 (493)
+...|++++ |.+.++++.+. .|+ ...+..+..+..
T Consensus 316 ~~~~g~~~~---A~~~~~~a~~~--~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 316 YLIEEMYDE---AIQDYEAAQEH--NENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHTTCHHH---HHHHHHHHHTT--CTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHH---HHHHHHHHHhc--CCCChHHHHHHHHHHH
Confidence 999999999 99999999975 566 455555554433
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-20 Score=183.80 Aligned_cols=355 Identities=13% Similarity=0.053 Sum_probs=271.9
Q ss_pred HhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011137 79 LWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 158 (493)
...+.+.|++.|+.+.... |.+...+..+..++...|++++|...|+.+ ... |+ .....+..+...+...+|.
T Consensus 71 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~-~~~--~~--~~~~~~~~~~~~~~~~~a~ 143 (537)
T 3fp2_A 71 STGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL-SLN--GD--FDGASIEPMLERNLNKQAM 143 (537)
T ss_dssp HHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH-hcC--CC--CChHHHHHHHHHHHHHHHH
Confidence 3467899999999886643 458899999999999999999999999744 322 22 1122234455566667888
Q ss_pred HHHHHHHhCC------CCCCHH------------------------------HHHHHHHHHHcc--------CCHHHHHH
Q 011137 159 KIFLSMHEHG------CRQSLN------------------------------SFNTILDLLCKE--------KKVEKAYN 194 (493)
Q Consensus 159 ~~~~~~~~~~------~~~~~~------------------------------~~~~ll~~~~~~--------g~~~~A~~ 194 (493)
..++.+.... ..|+.. ....+...+... |++++|..
T Consensus 144 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~ 223 (537)
T 3fp2_A 144 KVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD 223 (537)
T ss_dssp HHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 8888775421 111111 222222222222 47889999
Q ss_pred HHHHhhcCCCCCcc-------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 195 LFKVFRGKFKADVI-------SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 195 ~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
+|+.+....+.+.. ++..+...+...|++++|.+.++++.+.. |+...+..+...+...|++++|.+.+++
T Consensus 224 ~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 301 (537)
T 3fp2_A 224 MYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQK 301 (537)
T ss_dssp HHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHH
T ss_pred HHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99998877665543 46777788889999999999999999864 5578889999999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh
Q 011137 268 MKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS 347 (493)
Q Consensus 268 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 347 (493)
+.+.... +..++..+...+...|++++|++.|+++.+... .+...+..+...+...|++++|...++++.+... .+.
T Consensus 302 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~ 378 (537)
T 3fp2_A 302 AVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP-TLP 378 (537)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCT
T ss_pred HhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCh
Confidence 9887543 788999999999999999999999999988643 3567899999999999999999999999988743 356
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhcCC
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDDE-----CEPNVQTYNILIRYFCDA----------GEIERGLELFEKMGSGV 412 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~ 412 (493)
..+..+...+...|++++|...++++.+.. .......+..+...+... |++++|...|+++.+..
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 788899999999999999999999987642 112233355566777777 99999999999998852
Q ss_pred CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 413 CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 413 ~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
+.+...+..+...+...|++++ |.+.+++..+.
T Consensus 459 -p~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~ 491 (537)
T 3fp2_A 459 -PRSEQAKIGLAQLKLQMEKIDE---AIELFEDSAIL 491 (537)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhccHHH---HHHHHHHHHHh
Confidence 3467889999999999999999 99999999985
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-20 Score=169.72 Aligned_cols=292 Identities=11% Similarity=0.047 Sum_probs=189.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+++|+++.+.. +.+...+..++.++...|++++|..+++++....+.+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 44455556666666677777777666666543 33444555566666666777777777666665555566666667777
Q ss_pred HHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 011137 217 WCLVK-RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 217 ~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 295 (493)
+...| ++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.+.... +...+..+...|...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHH
Confidence 77777 677777777776655432 4556666777777777777777777776665332 44555556777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCChhhHHHHHHHHHhcCCHHHHH
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG--------YMPNSTTYNVVIRGLCHTGEMERAL 367 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~a~ 367 (493)
|.+.++++.+... .+...+..+...+...|++++|...++++.+.. ...+...+..+..++...|++++|.
T Consensus 178 A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 7777777766532 355667777777777777777777777666531 1223456777777777788888888
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-hccCCcc
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM-FVRKKSD 434 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~-~~~~~~~ 434 (493)
..++++.+.. +.+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+..++ ...|+.+
T Consensus 257 ~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 257 DYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 8887777653 3456677778888888888888888888777642 23566666666666 3444443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-19 Score=166.87 Aligned_cols=294 Identities=12% Similarity=-0.006 Sum_probs=250.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.++..+..+...+...|++++|..+++++.+..+ .+...+..++..+...|++++|...++++.+.. +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 45677888899999999999999999999987653 456677778888999999999999999998764 4567888999
Q ss_pred HHHHHccC-CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 180 LDLLCKEK-KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 180 l~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
...+...| ++++|...|++.....+.+...|..+...+...|++++|.+.++++.+.... +...+..+...+...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 99999999 9999999999998877778889999999999999999999999999876544 456777799999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG--------VLPSVATYNAMIQVLCKKDSVEN 330 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~~~~~~ 330 (493)
++|.+.++++.+... .+..++..+...+...|++++|...++++.+.. .+....++..+...|...|++++
T Consensus 176 ~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 999999999998754 478899999999999999999999999987631 13346789999999999999999
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH-HhcCCHH
Q 011137 331 AILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYF-CDAGEIE 399 (493)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 399 (493)
|...+++..+.... +...+..+..++...|++++|...++++.+.. +.+...+..+..++ ...|+.+
T Consensus 255 A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 255 ALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 99999999876433 67788999999999999999999999998864 44778888888877 4556543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.8e-17 Score=159.84 Aligned_cols=352 Identities=11% Similarity=0.072 Sum_probs=259.9
Q ss_pred CHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCH
Q 011137 102 SPSSFDHAIDLAAR----LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS----AGKADRAVKIFLSMHEHGCRQSL 173 (493)
Q Consensus 102 ~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 173 (493)
++..+..+...+.. .+++++|...|++..+.| +...+..+...|.. .+++++|++.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 66777777777777 788888888888877764 56777777777877 788888888888887754 55
Q ss_pred HHHHHHHHHHHc----cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHH
Q 011137 174 NSFNTILDLLCK----EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL----VKRTNKALEVLKEMVDRGLNPNLTTY 245 (493)
Q Consensus 174 ~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~ 245 (493)
..+..|...|.. .+++++|...|++.... .+..++..+...|.. .++.++|+++|++..+.| +...+
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~ 186 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC 186 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 666677777776 67888888888776543 256677777777776 678888888888887764 56777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 246 NIVLKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV----VGEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 246 ~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
..+...|.. .++.++|.++|++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 777777777 778888888888877764 45666677777765 678888888888877653 4556666
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-----CCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 011137 318 MIQVLCK----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT-----GEMERALEFVGRMKDDECEPNVQTYNIL 388 (493)
Q Consensus 318 li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l 388 (493)
+...|.. .++.++|...|+...+.| +...+..+...|... ++.++|..++++..+.+ +...+..+
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~l 334 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANL 334 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHH
Confidence 7677766 778888888888877664 455666677777766 78888888888887764 45667777
Q ss_pred HHHHHhcC---CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc----cCCcccHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 389 IRYFCDAG---EIERGLELFEKMGSGVCLPNLDTYNILISSMFV----RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRV 461 (493)
Q Consensus 389 ~~~~~~~g---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 461 (493)
...|...| ++++|.+.|++..+.| +...+..+...|.. .++.++ |...+++..+.| +...+..+
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~---A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQ---AAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---HHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHH---HHHHHHHHHhCC---CHHHHHHH
Confidence 77777655 6788888888887753 66777777777776 566666 888888888765 46667777
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcC
Q 011137 462 LNGLLL----IGNQGLAKEILRLQSRCG 485 (493)
Q Consensus 462 ~~~~~~----~g~~~~a~~~~~~~~~~g 485 (493)
...|.. .++.++|.+.++...+.|
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 777777 788888888888777765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=9.6e-20 Score=170.50 Aligned_cols=256 Identities=10% Similarity=-0.003 Sum_probs=123.6
Q ss_pred cCCHHHHHH-HHHHHHhCCCC-C--CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 151 AGKADRAVK-IFLSMHEHGCR-Q--SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 151 ~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
.|++++|++ .+++....... | +...+..+...+...|++++|...|+++....+.+..+|..+...+...|++++|
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 117 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLA 117 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHH
Confidence 355555555 55544332110 1 2334555555666666666666666665555555555666666666666666666
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---------------HHHHHhccC
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT---------------IVHGFGVVG 291 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------li~~~~~~g 291 (493)
.+.|+++.+.... +..++..+..++...|++++|.+.++++...... +...+.. .+..+...|
T Consensus 118 ~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 118 ISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 6666666554322 4555666666666666666666666666554322 1111110 111222445
Q ss_pred CHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 011137 292 EIKRARNVFDGMVNGGVLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFV 370 (493)
Q Consensus 292 ~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 370 (493)
++++|...|+++.+..... +..++..+...|...|++++|...++++.+... .+...+..+...+...|++++|...+
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 274 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAY 274 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555554432111 244455555555555555555555555544321 13344555555555555555555555
Q ss_pred HHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 371 GRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 371 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+++.+.. +.+...+..+...|.+.|++++|...|+++.+
T Consensus 275 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 275 RRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5554432 23344555555555555555555555554443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-19 Score=168.45 Aligned_cols=311 Identities=8% Similarity=-0.042 Sum_probs=231.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH-HHHHhhcCCCC----CcchHHHHHHHHHhcCChhH
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN-LFKVFRGKFKA----DVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~-~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~ 225 (493)
.+.++.+...++.+.+.+ ++ ++...|++++|.. .|++.....+. +...+..+...+...|++++
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 82 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD--AE---------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPN 82 (368)
T ss_dssp -------------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHH
T ss_pred cccHHHHHHHHHHHHcCC--ch---------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHH
Confidence 344555555666655432 21 2344578899988 77765443222 35678899999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 226 ALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 226 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
|...|+++.+.... +..++..+..++...|++++|.+.++++.+... .+..++..+...|...|++++|.+.|+++.+
T Consensus 83 A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 160 (368)
T 1fch_A 83 AVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLR 160 (368)
T ss_dssp HHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999987544 778899999999999999999999999998754 3788999999999999999999999999998
Q ss_pred CCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 306 GGVLPSVATYNA---------------MIQVLCKKDSVENAILVFEEMVGKGYMP-NSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 306 ~~~~~~~~~~~~---------------li~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
.... +...+.. .+..+...|++++|...++++.+..... +..++..+...+...|++++|...
T Consensus 161 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~ 239 (368)
T 1fch_A 161 YTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDC 239 (368)
T ss_dssp TSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6432 2222221 2334448999999999999998864322 478899999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
++++.... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++ |...++++.+.
T Consensus 240 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~al~~ 314 (368)
T 1fch_A 240 FTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHRE---AVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH---HHHHHHHHHHH
T ss_pred HHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHh
Confidence 99998864 4568899999999999999999999999998752 3468899999999999999999 99999988864
Q ss_pred CCC---C-------CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011137 450 GFM---P-------RKFTFNRVLNGLLLIGNQGLAKEILRL 480 (493)
Q Consensus 450 g~~---p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 480 (493)
.-. | ...+|..+..++...|+.++|..++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 211 1 168899999999999999999988763
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-16 Score=154.95 Aligned_cols=339 Identities=10% Similarity=0.035 Sum_probs=289.7
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH----c
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAAR----LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVS----A 151 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 151 (493)
..+..+|++.|+.+.... ++..+..+...+.. .+++++|...|++....| +...+..+...|.. .
T Consensus 56 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~ 128 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVK 128 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC
T ss_pred CcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC
Confidence 356789999999887653 67889999999999 999999999999998875 67888888889988 8
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh----cCCh
Q 011137 152 GKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK----EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL----VKRT 223 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 223 (493)
+++++|+..|++..+.| +...+..+..+|.. .++.++|.+.|++..+. .+..++..+...|.. .++.
T Consensus 129 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~ 203 (490)
T 2xm6_A 129 VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERND 203 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCH
Confidence 89999999999998865 56778888888887 78999999999987654 377889999999988 8999
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV----VGEIKR 295 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 295 (493)
++|.++|++..+.| +...+..+...|.. .+++++|.+++++..+.+ +...+..+...|.. .++.++
T Consensus 204 ~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~ 277 (490)
T 2xm6_A 204 AISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLK 277 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHH
Confidence 99999999999875 56788888888886 789999999999998874 55677778888877 899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHH
Q 011137 296 ARNVFDGMVNGGVLPSVATYNAMIQVLCKK-----DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG---EMERAL 367 (493)
Q Consensus 296 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~ 367 (493)
|++.|++..+.| +...+..+...|... ++.++|...+++..+.| +...+..+...|...| +.++|.
T Consensus 278 A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~ 351 (490)
T 2xm6_A 278 ALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAV 351 (490)
T ss_dssp HHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHH
Confidence 999999998764 566778888888887 89999999999999875 4567777888887766 789999
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc----cCCcccHHHH
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV----RKKSDDLLVA 439 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~A 439 (493)
++|++..+.+ +...+..|...|.. .+++++|...|++..+.| +...+..+...|.. .++.++ |
T Consensus 352 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~---A 422 (490)
T 2xm6_A 352 EWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQ---A 422 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---H
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHH---H
Confidence 9999999874 67888999999998 899999999999999864 67788888888887 677777 9
Q ss_pred HHHHHHHHHCCC
Q 011137 440 GKLLIEMVDRGF 451 (493)
Q Consensus 440 ~~~~~~m~~~g~ 451 (493)
...|++..+.|.
T Consensus 423 ~~~~~~A~~~~~ 434 (490)
T 2xm6_A 423 WAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHCCC
Confidence 999999998763
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-19 Score=168.70 Aligned_cols=269 Identities=8% Similarity=-0.053 Sum_probs=209.8
Q ss_pred CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 205 ADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284 (493)
Q Consensus 205 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 284 (493)
.+...|..+...+.+.|++++|.++|+++.+.... +..++..+..++.+.|++++|++.|+++.+... .+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 34566888888888999999999999988876543 677888888999999999999999998887643 3678888889
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CChhhHHHHH
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVL---------PSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-PNSTTYNVVI 354 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li 354 (493)
.+|...|++++|+..|+++.+.... .....+..+...+...|++++|...++++.+.... .+...+..+.
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 9999999999999999888764211 01223344577888999999999999999887432 2577888999
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcc
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 434 (493)
..+...|++++|+..++++.+.. +.+..+|..+...|...|++++|...|+++.+.. +.+..+|..+..+|...|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998864 5578899999999999999999999999998852 335888999999999999999
Q ss_pred cHHHHHHHHHHHHHCC---CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 011137 435 DLLVAGKLLIEMVDRG---FM--------PRKFTFNRVLNGLLLIGNQGLAKEILRL 480 (493)
Q Consensus 435 ~~~~A~~~~~~m~~~g---~~--------p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 480 (493)
+ |...++++.+.. .. .+...|..+..++...|+.+.+.++.+.
T Consensus 299 ~---A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 E---AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp H---HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred H---HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9 889999887631 01 1357888999999999999999887754
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.2e-18 Score=161.06 Aligned_cols=276 Identities=10% Similarity=-0.018 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
...|..+...+.+.|++++|...|+++.+..+ .+..++..+...|...|++++|+..|+++.+.. +.+..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 34466666666666666666666666665532 355666666666666666666666666666543 3345566666666
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
|...|++++|...|+++....+.+...+..+. .....+..+...+...|++++|.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~g~~~~A~ 197 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKK-------------------------GSPGLTRRMSKSPVDSSVLEGVK 197 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC--------------------------------------------CCHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhc-------------------------cchHHHHHHHHHHhhhhhHHHHH
Confidence 66666666666666655433222222221110 00112222344444444444444
Q ss_pred HHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 263 RFFLEMKKRKCE-IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 263 ~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+.++++.+.... .+..++..+...|...|++++|++.|+++.+.. +.+..+|..+..+|...|++++|...++++.+.
T Consensus 198 ~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 198 ELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp HHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 444444443211 134444445555555555555555555544432 123444555555555555555555555555443
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 342 GYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-----------EPNVQTYNILIRYFCDAGEIERGLELFEK 407 (493)
Q Consensus 342 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 407 (493)
.. .+...+..+..+|...|++++|...++++.+... ..+..+|..+..++...|+.+.+..+.++
T Consensus 277 ~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 277 QP-GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp CT-TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 21 1344455555555555555555555555543210 01245566666666666666666665544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.82 E-value=5.4e-18 Score=155.70 Aligned_cols=280 Identities=6% Similarity=-0.043 Sum_probs=160.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...+......+...|++++|..+++++.+..+ .+..++..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 334566777788888888888888888877643 467778888888888888888888888887754 456777778888
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH-HH-HHHhcCCHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV-LK-GYFRAGQIE 259 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-~~-~~~~~g~~~ 259 (493)
++...|++++|...++++....+.+...+..+.... |+......+ .. .+...|+++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 155 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYR 155 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHH
Confidence 888888888888888877765555554444441100 000001111 11 133444555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 260 EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339 (493)
Q Consensus 260 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 339 (493)
+|.+.++++.+.... +..++..+...|...|++++|.+.++++.+.. +.+..++..+...+...|++++|...++++.
T Consensus 156 ~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 156 ECRTLLHAALEMNPN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555554444222 44445555555555555555555555554432 1234455555555555555555555555555
Q ss_pred hCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 340 GKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP-----------NVQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 340 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
+... .+...+..+..++...|++++|.+.++++.+..... +...|..+..++.+.|++++|..++++.
T Consensus 234 ~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 234 DINP-GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HcCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4321 134455555556666666666666666555432110 3456666666666666666666666544
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-18 Score=155.69 Aligned_cols=277 Identities=10% Similarity=0.026 Sum_probs=183.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|+.+|+++.+.. +.+...+..+..++...|++++|...++++....+.+..++..+...+...
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence 3444455555555555555555555432 234445555555555555555555555554444344444455555555555
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHhccCCHHHHHH
Q 011137 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTI-VH-GFGVVGEIKRARN 298 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~ 298 (493)
|++++|.+.++++.+.... +...+..+... .++......+ .. .+...|++++|.+
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 5555555555555443211 11111111000 0011111112 22 4788999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 011137 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 378 (493)
.++++.+... .+...+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++.+..
T Consensus 160 ~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~- 236 (327)
T 3cv0_A 160 LLHAALEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDIN- 236 (327)
T ss_dssp HHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 9999988643 3788899999999999999999999999987643 367789999999999999999999999998864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCC-----------CHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 379 EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLP-----------NLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
+.+...+..+...|.+.|++++|.+.++++.+..... +...|..+..++...|+.++ |..++++.+
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~l 313 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL---VELTYAQNV 313 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHH---HHHHTTCCS
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHH---HHHHHHHHH
Confidence 4578899999999999999999999999987742111 47789999999999999999 877776543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.81 E-value=5.1e-16 Score=152.52 Aligned_cols=392 Identities=10% Similarity=0.049 Sum_probs=280.1
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHH-HHcCCHHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERY-VSAGKADRAV 158 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~ 158 (493)
.++...|..+|+.+.... |.+...|...+..+.+.|++++|..+|+++.... |+...|...+... ...|+.+.|.
T Consensus 25 ~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~~~~~~~~~~~a~ 100 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSYVRETKGKLPSYK 100 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHHHHHHTTTSTTHH
T ss_pred hCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHccchhhHH
Confidence 356788999999887643 5688899999999999999999999999998865 5777777777533 3457766665
Q ss_pred H----HHHHHHh-CCCC-CCHHHHHHHHHHHHc---------cCCHHHHHHHHHHhhcCCCCCc--chHHHHHHHHH---
Q 011137 159 K----IFLSMHE-HGCR-QSLNSFNTILDLLCK---------EKKVEKAYNLFKVFRGKFKADV--ISYNVIANGWC--- 218 (493)
Q Consensus 159 ~----~~~~~~~-~~~~-~~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~--- 218 (493)
+ +|+.... .|.. .+...|...+....+ .|+++.|..+|++... .|.+. ..|........
T Consensus 101 ~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 101 EKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chhhhHHHHHHHHHHHHHhhc
Confidence 4 6776654 2433 356778777776654 6889999999998876 33221 23433332211
Q ss_pred ----------hcCChhHHHHHHHHH------HhCC---CCCC--------HHHHHHHHHHHHhc----CCH----HHHHH
Q 011137 219 ----------LVKRTNKALEVLKEM------VDRG---LNPN--------LTTYNIVLKGYFRA----GQI----EEAWR 263 (493)
Q Consensus 219 ----------~~~~~~~A~~~~~~m------~~~g---~~p~--------~~~~~~l~~~~~~~----g~~----~~a~~ 263 (493)
..+++..|..++.++ .+.. +.|+ ...|...+...... ++. +.+..
T Consensus 180 ~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~ 259 (530)
T 2ooe_A 180 IHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMF 259 (530)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHH
Confidence 234566676666653 2221 2333 23455444333221 222 36778
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 264 FFLEMKKRKCEIDVVTYTTIVHGFGV-------VGEIK-------RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVE 329 (493)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 329 (493)
+|++..... +.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|+++
T Consensus 260 ~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~ 338 (530)
T 2ooe_A 260 AYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYE 338 (530)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHH
Confidence 888888763 3478888888888875 78876 89999999986323346888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHH
Q 011137 330 NAILVFEEMVGKGYMPN--STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRY-FCDAGEIERGLELFE 406 (493)
Q Consensus 330 ~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~ 406 (493)
+|..+|+++.+. .|+ ...|...+..+.+.|++++|..+|++..+.. +.+...|...+.. +...|+.++|..+|+
T Consensus 339 ~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e 415 (530)
T 2ooe_A 339 KVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFE 415 (530)
T ss_dssp HHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHH
Confidence 999999999986 343 2478888888888999999999999998763 2233344333222 346899999999999
Q ss_pred HHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 407 KMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG-FMPR--KFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 407 ~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
+..+. .+.+...|..++..+...|+.++ |..+|++.+..+ ..|+ ...|...+......|+.+.+..+.+.+.+
T Consensus 416 ~al~~-~p~~~~~~~~~~~~~~~~g~~~~---Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 416 LGLKK-YGDIPEYVLAYIDYLSHLNEDNN---TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHH-HTTCHHHHHHHHHHHTTTTCHHH---HHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHH-CCCCHHHHHHHHHHHHhCCCHhh---HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 98875 23368899999999999999988 999999999863 2332 45788888888889999999998887765
Q ss_pred c
Q 011137 484 C 484 (493)
Q Consensus 484 ~ 484 (493)
.
T Consensus 492 ~ 492 (530)
T 2ooe_A 492 A 492 (530)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-16 Score=150.51 Aligned_cols=368 Identities=9% Similarity=-0.070 Sum_probs=253.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC--------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL--------SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH---- 167 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 167 (493)
......||.+..++...|++++|++.|++..+. ..+....+|..+...|...|++++|...+++..+.
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334678999999999999999999999886542 12234678999999999999999999999887642
Q ss_pred C---CCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH---HhcCChhHHHHHHHHHHhCCCC
Q 011137 168 G---CRQSLNSFNTILDLLCK--EKKVEKAYNLFKVFRGKFKADVISYNVIANGW---CLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 168 ~---~~~~~~~~~~ll~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
. ......++.....++.. .+++++|...|++.....|.+...+..+...+ ...++.++|++.+++..+....
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 1 11234566665555554 45799999999998876666777777666654 4467888999999998876443
Q ss_pred CCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 240 PNLTTYNIVLKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATY 315 (493)
Q Consensus 240 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 315 (493)
+..++..+...+.. .|+.++|.+.+++...... .+..++..+...|...|++++|++.|++..+... .+..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHH
Confidence 55666666655554 4678899999999888744 3788899999999999999999999999988533 356667
Q ss_pred HHHHHHHHhc-------------------CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 316 NAMIQVLCKK-------------------DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 316 ~~li~~~~~~-------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..+..+|... +..+.|...++...+... .+...+..+...+...|++++|+..|++..+.
T Consensus 285 ~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 7666665432 235678888887776543 25567888999999999999999999999887
Q ss_pred CCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCC
Q 011137 377 ECEPNVQ--TYNILIR-YFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP 453 (493)
Q Consensus 377 ~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p 453 (493)
...+... .+..+.. .+...|+.++|+..|++..+. .|+.......+ +. +.+++++.++.. ..
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~~~---------~~---l~~~~~~~l~~~-p~ 428 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEKMK---------DK---LQKIAKMRLSKN-GA 428 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHHHH---------HH---HHHHHHHHHHHC-C-
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHHHH---------HH---HHHHHHHHHHhC-CC
Confidence 4333221 2333332 235789999999999999884 45543332222 12 445566665542 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q 011137 454 RKFTFNRVLNGLLLIGNQGLAKEILRLQSRCGR 486 (493)
Q Consensus 454 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 486 (493)
+..+|..+...+...|++++|.+.+++..+.|.
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC--------------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 577889999999999999999999999888763
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.5e-17 Score=146.32 Aligned_cols=252 Identities=13% Similarity=0.128 Sum_probs=149.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
+.....|+++.|+..++.+....+.........+.++|...|+++.|+..++. ..+|+..++..+...+...|+.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 34455677777777666654432211123445566677777777777665433 12445556666666677777777
Q ss_pred HHHHHHHHhhcC--CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 191 KAYNLFKVFRGK--FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 191 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+|++.++++... .|.+...+..+...+...|++++|++.+++ ..+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777665432 244455566666667777777777776665 235566666667777777777777777776
Q ss_pred HHCCCCCCHHH---HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 011137 269 KKRKCEIDVVT---YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMP 345 (493)
Q Consensus 269 ~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 345 (493)
.+.. |+... ...++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...+++..+....
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~- 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG- 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 6653 22211 112223334446677777777776665 3345666666666677777777777777666655322
Q ss_pred ChhhHHHHHHHHHhcCCHHH-HHHHHHHhhhC
Q 011137 346 NSTTYNVVIRGLCHTGEMER-ALEFVGRMKDD 376 (493)
Q Consensus 346 ~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~ 376 (493)
+..++..++..+...|+.++ +.++++++.+.
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 45566666666666666654 45666666654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-18 Score=158.20 Aligned_cols=282 Identities=9% Similarity=0.068 Sum_probs=133.4
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.+.+.|.++++.+ +++.+|..+..++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..
T Consensus 17 ~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 17 GNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3457888998877 23459999999999999999999999653 5777999999999999999999998
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP 240 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 240 (493)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ---------------------------CHHHHTTTTT------CC----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 8777764 3557788899999999999999887774 367789999999999999999999999977
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ....-...++.
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~ 215 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN 215 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHH
Confidence 37899999999999999999999988 278999999999999999999966655432 23444557889
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC------CHHHHHHHHHHHH
Q 011137 321 VLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD-ECEP------NVQTYNILIRYFC 393 (493)
Q Consensus 321 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~ 393 (493)
.|.+.|++++|..+++...... .-....|+-+.-+|++- ++++..+.++...+. +++| +...|..+...|.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988664 33566777777777764 344444444333322 3333 4556888999999
Q ss_pred hcCCHHHHHHHH
Q 011137 394 DAGEIERGLELF 405 (493)
Q Consensus 394 ~~g~~~~a~~~~ 405 (493)
..++++.|....
T Consensus 294 ~~~e~d~A~~tm 305 (449)
T 1b89_A 294 KYEEYDNAIITM 305 (449)
T ss_dssp HTTCHHHHHHHH
T ss_pred hhchHHHHHHHH
Confidence 999999887643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=157.28 Aligned_cols=280 Identities=11% Similarity=0.117 Sum_probs=135.4
Q ss_pred HhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHH
Q 011137 114 ARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAY 193 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~ 193 (493)
.+.|+.++|.++++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+...|++++|+
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 46688999999999982 3459999999999999999999999652 56778999999999999999999
Q ss_pred HHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011137 194 NLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273 (493)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 273 (493)
.+++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|...|..+
T Consensus 82 ~yl~~ark~-~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 82 KYLQMARKK-ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHHHh-CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 988877664 4567889999999999999999998885 367789999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011137 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVV 353 (493)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (493)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.-...+
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~l 213 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 213 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHH
Confidence 47999999999999999999999998 27899999999999999999996655442 2344446678
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-CCCC------CHHHHHHHHHH
Q 011137 354 IRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG-VCLP------NLDTYNILISS 426 (493)
Q Consensus 354 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p------~~~~~~~li~~ 426 (493)
+..|.+.|.+++|..+++...... +-....|+-|..+|++- ++++.++.++..... +++| +...|..++-.
T Consensus 214 v~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 214 INYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999776 66788899888888764 334444444333222 2333 46789999999
Q ss_pred HhccCCccc
Q 011137 427 MFVRKKSDD 435 (493)
Q Consensus 427 ~~~~~~~~~ 435 (493)
|.+.++++.
T Consensus 292 y~~~~e~d~ 300 (449)
T 1b89_A 292 YDKYEEYDN 300 (449)
T ss_dssp HHHTTCHHH
T ss_pred HHhhchHHH
Confidence 999999998
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.9e-17 Score=145.56 Aligned_cols=249 Identities=13% Similarity=0.111 Sum_probs=122.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQS--LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
-....|+++.|+..++...... |+ ......+..+|...|+++.|+..++. ..+|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 3444566666666655543321 22 22334455566666666666543322 23444455555566666666666
Q ss_pred HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
+|++.++++...+..| +...+..+..++...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6666666665544333 233444455556666666666666554 234555555555555555555555555555
Q ss_pred HHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 011137 304 VNGGVLPSVATY---NAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380 (493)
Q Consensus 304 ~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 380 (493)
.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++.+.. +-
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 5432 221111 111122223345555555555554441 2244444555555555555555555555544432 22
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHhc
Q 011137 381 NVQTYNILIRYFCDAGEIER-GLELFEKMGS 410 (493)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 410 (493)
+..++..++..+...|+.++ +.++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 44445555555555554433 3344444444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.7e-14 Score=145.28 Aligned_cols=361 Identities=13% Similarity=0.150 Sum_probs=239.4
Q ss_pred CCCHHHHHHHHHHHh--hChHHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHH
Q 011137 66 HWTPQLVDQIIKRLW--NHALKALHFFNILSYHPT-YAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFA 142 (493)
Q Consensus 66 ~~~~~~~~~~l~~~~--~~~~~A~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 142 (493)
..+|..++-+.+.+- +.+..|+++++.+...+. +..+....+.++....+. +..+..+..+++... + ..
T Consensus 982 ~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~ 1053 (1630)
T 1xi4_A 982 TQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---AP 1053 (1630)
T ss_pred ccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HH
Confidence 456666666666543 446777777777764433 334556666666666666 455555555555421 1 23
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR 222 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 222 (493)
.+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++...|+
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCC
Confidence 36667777888888888888752 12222233332 5677888888777552 56788888888888888
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDG 302 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 302 (493)
+++|++.|.+. -|...|..++.++.+.|++++|.+++....+... +....+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH--
Confidence 88888888664 2677788888888888888888888887776542 3333335888888888877543332
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 011137 303 MVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382 (493)
Q Consensus 303 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (493)
+ .++...|..+...|...|++++|..+|... ..|..+..++.+.|++++|.+.+++.. +.
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~ 1250 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------ST 1250 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CH
Confidence 2 245666777888888888888888888874 378888888888888888888888763 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRK-FTFNRV 461 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~l 461 (493)
.+|..+..+|...|++..|......+. .+...+..++..|...|.+++ |+.+++..+.. .+.. ..|+.+
T Consensus 1251 ~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feE---AI~LlE~aL~L--eraH~gmftEL 1320 (1630)
T 1xi4_A 1251 RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEE---LITMLEAALGL--ERAHMGMFTEL 1320 (1630)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHH---HHHHHHHHhcc--ChhHhHHHHHH
Confidence 778888888888888888877665432 356667788888888888888 88888777643 3333 334334
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Q 011137 462 LNGLLLIGNQGLAKEILRLQSRCGRLP 488 (493)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~~g~~~ 488 (493)
...+.+ -+.++..+.++.+...+-.|
T Consensus 1321 aiLyaK-y~peklmEhlk~f~~rini~ 1346 (1630)
T 1xi4_A 1321 AILYSK-FKPQKMREHLELFWSRVNIP 1346 (1630)
T ss_pred HHHHHh-CCHHHHHHHHHHHHHhcccc
Confidence 433333 34444444444444444333
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=171.27 Aligned_cols=116 Identities=16% Similarity=0.136 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 011137 312 VATYNAMIQVLCKKDSVENAILVFEEMVG---KGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNIL 388 (493)
Q Consensus 312 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 388 (493)
..+|+++|++||+.|++++|..+|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44677777777777777777777766553 366777777777777777777777777777777777777777777777
Q ss_pred HHHHHhcCC-HHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 389 IRYFCDAGE-IERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 389 ~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
|.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 777777766 356677777777777777777777666543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-18 Score=170.47 Aligned_cols=115 Identities=18% Similarity=0.228 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhc----CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRG----KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 173 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (493)
..+||++|++||+.|++++|.++|+.|.+ +..||+.+||+||.+|++.|++++|.++|++|.+.|+.||.+||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34667777777777777777776665542 35666666666666666666666666666666666666666666666
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 249 LKGYFRAGQ-IEEAWRFFLEMKKRKCEIDVVTYTTIVHGF 287 (493)
Q Consensus 249 ~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 287 (493)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 666666665 356666666666666666666666665443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.3e-14 Score=138.80 Aligned_cols=371 Identities=6% Similarity=-0.016 Sum_probs=262.8
Q ss_pred CHHHHHHHHHHH--hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChHHHHH----HHHHHhh-CCCC-CCH
Q 011137 68 TPQLVDQIIKRL--WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLA-ARLRDYRTVWT----LVHRMKS-LSLG-PTQ 138 (493)
Q Consensus 68 ~~~~~~~~l~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~-~~~~~~~~a~~----~~~~~~~-~~~~-~~~ 138 (493)
++..-...+... .++.+.|..+|+.+.... |+...|...+... ...|+.+.|.+ +|+.... .|.. .+.
T Consensus 45 ~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~ 121 (530)
T 2ooe_A 45 SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSY 121 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccH
Confidence 444444444433 357789999999987653 4788888888644 45677777665 7776654 2433 467
Q ss_pred HHHHHHHHHHHH---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-------------HccCCHHHHHHHH
Q 011137 139 KTFAIIAERYVS---------AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLL-------------CKEKKVEKAYNLF 196 (493)
Q Consensus 139 ~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~-------------~~~g~~~~A~~~~ 196 (493)
..|...+....+ .|++++|..+|++..+.........|....... .+.+++..|..++
T Consensus 122 ~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~ 201 (530)
T 2ooe_A 122 QIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVA 201 (530)
T ss_dssp HHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHH
Confidence 788888877655 789999999999998832111123443332211 1345677777776
Q ss_pred HHh------hcC----CCCC--------cchHHHHHHHHHhc----CCh----hHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 197 KVF------RGK----FKAD--------VISYNVIANGWCLV----KRT----NKALEVLKEMVDRGLNPNLTTYNIVLK 250 (493)
Q Consensus 197 ~~~------~~~----~~~~--------~~~~~~l~~~~~~~----~~~----~~A~~~~~~m~~~g~~p~~~~~~~l~~ 250 (493)
+.+ ... .+|+ ...|...+...... ++. ..+..+|++....... +...|...+.
T Consensus 202 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~-~~~~w~~~~~ 280 (530)
T 2ooe_A 202 KEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH-HPDIWYEAAQ 280 (530)
T ss_dssp HHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 652 121 2333 13555555433222 232 3778899998875333 6778888888
Q ss_pred HHHh-------cCCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHH
Q 011137 251 GYFR-------AGQIE-------EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS--VAT 314 (493)
Q Consensus 251 ~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~ 314 (493)
.+.+ .|+++ +|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++.+. .|+ ...
T Consensus 281 ~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~ 358 (530)
T 2ooe_A 281 YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLV 358 (530)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHH
T ss_pred HHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHH
Confidence 8775 79987 89999999987323446889999999999999999999999999985 343 358
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 011137 315 YNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG-LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFC 393 (493)
Q Consensus 315 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 393 (493)
|...+..+.+.|++++|..+|++..+.... +...|...... +...|+.++|..+|+...+.. +.+...|..++..+.
T Consensus 359 ~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 359 YIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 999999999999999999999999986322 23333332222 336899999999999998763 446889999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCC-CC--CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 394 DAGEIERGLELFEKMGSGVC-LP--NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 394 ~~g~~~~a~~~~~~~~~~~~-~p--~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
+.|+.++|..+|++....+. .| ....|...+......|+.+. +.++..++.+.
T Consensus 437 ~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~---~~~~~~r~~~~ 492 (530)
T 2ooe_A 437 HLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLAS---ILKVEKRRFTA 492 (530)
T ss_dssp TTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHH---HHHHHHHHHHH
T ss_pred hCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHH
Confidence 99999999999999988632 23 25588888888888899888 88888888764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=130.61 Aligned_cols=199 Identities=12% Similarity=0.047 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
|+++..+..+...+.+.|++++|...|++..+..+ .+...+..+...+.+.|++++|+..|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 34556666666677777777777777777666543 456666666777777777777777777666553 3455566666
Q ss_pred HHHHHcc-----------CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 180 LDLLCKE-----------KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 180 l~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (493)
..++... |++++|+..|++..+..|.+...|..+...+...|++++|++.|++..+.. .+...+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 6666666 555555555555554444455555555555555555555555555555544 345555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
..++...|++++|+..+++..+.... +...+..+...+...|++++|+..|++.
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55555555555555555555554322 4445555555555555555555555443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-14 Score=139.14 Aligned_cols=365 Identities=10% Similarity=-0.001 Sum_probs=245.2
Q ss_pred HHHHHHhhChHHHHHHHHHhhc-------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhC-----C--CCCCHH
Q 011137 74 QIIKRLWNHALKALHFFNILSY-------HPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSL-----S--LGPTQK 139 (493)
Q Consensus 74 ~~l~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~ 139 (493)
..+.....+.++|++.|+.... ....+....+|+.+..+|...|++++|...+++.... + ......
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 4455566788889988877632 1122345778999999999999999999999887542 1 112456
Q ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHccCCHHHHHHHHHHhhcCCCCCcchHHHHH
Q 011137 140 TFAIIAERYVSA--GKADRAVKIFLSMHEHGCRQSLNSFNTILDL---LCKEKKVEKAYNLFKVFRGKFKADVISYNVIA 214 (493)
Q Consensus 140 ~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 214 (493)
++.....++... +++++|++.|++..+.. +.+...+..+..+ +...++.++|++.+++.....+.+..++..+.
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~ 216 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLA 216 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 777666666554 47999999999998764 3455666555554 44567888899998887766666777777776
Q ss_pred HHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011137 215 NGWCL----VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 215 ~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (493)
..+.. .|++++|.+++++....... +..++..+...+...|++++|...+++..+.... +..++..+..+|...
T Consensus 217 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~ 294 (472)
T 4g1t_A 217 LKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAK 294 (472)
T ss_dssp HHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence 65554 46788999999998876544 6778899999999999999999999999887443 677777776665432
Q ss_pred -------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh--h
Q 011137 291 -------------------GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST--T 349 (493)
Q Consensus 291 -------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~ 349 (493)
+..+.|...|++..+... .+..++..+...|...|++++|...|++..+....+... .
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~ 373 (472)
T 4g1t_A 295 VFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLL 373 (472)
T ss_dssp HHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHH
Confidence 235678888888776533 355678889999999999999999999998875433221 2
Q ss_pred HHHHHH-HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 350 YNVVIR-GLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 350 ~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
+..+.. .....|+.++|+..|.+..+. .|+..... +....+.+++++..+. -+.+..+|..+..+|.
T Consensus 374 ~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~~~l~~~~~~~l~~-~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 374 HLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMKDKLQKIAKMRLSK-NGADSEALHVLAFLQE 441 (472)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHHHHHHHHHHHHHHH-CC-CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 222222 235789999999999999886 34432221 2234445556655553 2346789999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHCC-CCCCHHH
Q 011137 429 VRKKSDDLLVAGKLLIEMVDRG-FMPRKFT 457 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~ 457 (493)
..|++++ |++.|++.++.| ..|+..+
T Consensus 442 ~~g~~~~---A~~~y~kALe~~~~~p~a~~ 468 (472)
T 4g1t_A 442 LNEKMQQ---ADEDSERGLESGSLIPSASS 468 (472)
T ss_dssp HHHHCC------------------------
T ss_pred HcCCHHH---HHHHHHHHHhcCCCCCcHhh
Confidence 9999999 999999999764 2344433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-13 Score=137.49 Aligned_cols=290 Identities=11% Similarity=0.116 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
..+|..+..++...|++++|++.|.+. .|...|..++.++.+.|++++|.++|....+.. ++....+.++.+|
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~-~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA-RESYVETELIFAL 1177 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc-ccccccHHHHHHH
Confidence 445555555555555555555555332 234444455555555555555555554443322 2222222355555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 297 (493)
++.+++++...+. + .++...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.
T Consensus 1178 AKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AI 1241 (1630)
T 1xi4_A 1178 AKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAV 1241 (1630)
T ss_pred HhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHH
Confidence 5555544322221 1 123344444555555555555555555543 24555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 298 NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
+.+++. .+..+|..+-.+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++......
T Consensus 1242 EaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1242 DGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 555544 2445555555555555555555544432 12245556677777777788888888877776554
Q ss_pred CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHhcCCCCC------CHHHHHHHHHHHhccCCcccHHHHHH--------
Q 011137 378 CEPNVQTYNILIRYFCDA--GEIERGLELFEKMGSGVCLP------NLDTYNILISSMFVRKKSDDLLVAGK-------- 441 (493)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~li~~~~~~~~~~~~~~A~~-------- 441 (493)
+-+...|+-|...|++. ++..++.+.|..-.. +++ +...|..++-.|.+.|+++. |..
T Consensus 1311 -raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dn---A~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1311 -RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDN---AIITMMNHPTD 1384 (1630)
T ss_pred -hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHH---HHHHHHhccHh
Confidence 33455666666666543 344444444443222 222 45667778888887777777 441
Q ss_pred -----HHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 011137 442 -----LLIEMVDRGFMPRKFTFNRVLNGLLLIG 469 (493)
Q Consensus 442 -----~~~~m~~~g~~p~~~~~~~l~~~~~~~g 469 (493)
.|.+.+.+ ..|...|...+.-|...+
T Consensus 1385 a~~~~~Fk~~i~k--v~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1385 AWKEGQFKDIITK--VANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred hhhhHHHHHHhcc--cccHHHHHHHHHHHHhhC
Confidence 22222222 345666666666665555
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-15 Score=130.82 Aligned_cols=156 Identities=10% Similarity=0.112 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011137 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVL 322 (493)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~ 322 (493)
.++..+...+...|++++|.+.++++.+.. ++. ..+...|++++|...++++..... .+...+..+...+
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHH
Confidence 344444444555555555555555444432 121 223344455555555555554311 1233445555555
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 323 CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGL 402 (493)
Q Consensus 323 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 402 (493)
...|++++|...++++.+.... +...+..+..++...|++++|...++.+.+.. +.+...|..+...+.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 5555555555555555544221 34455555555556666666666666555542 334555556666666666666666
Q ss_pred HHHHHHhc
Q 011137 403 ELFEKMGS 410 (493)
Q Consensus 403 ~~~~~~~~ 410 (493)
+.+++..+
T Consensus 228 ~~~~~a~~ 235 (258)
T 3uq3_A 228 ETLDAART 235 (258)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.1e-15 Score=129.39 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
++...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++.....|.+...+..+..
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~ 81 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE 81 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 345556666666666666666666666666543 3455666666666666666666666666665555555566666666
Q ss_pred HHHhc-----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 216 GWCLV-----------KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIV 284 (493)
Q Consensus 216 ~~~~~-----------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li 284 (493)
.+... |++++|+..+++..+..+. +...+..+..++...|++++|+..+++..+.. .+...+..+.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 66666 5555555555555544322 34455555555555555555555555555554 3555555555
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
.+|...|++++|+..|++..+... .+...+..+...+...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 555555555555555555554321 23445555555555555555555555443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=6.6e-15 Score=129.96 Aligned_cols=223 Identities=12% Similarity=0.052 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC-------cchHHH
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD-------VISYNV 212 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~ 212 (493)
.+..+...+...|++++|+..|+++.+.. .+...+..+..++...|++++|...+++.....+.+ ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444455555555555555544443 344444445555555555555555554433221111 344555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 011137 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292 (493)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 292 (493)
+...+...|++++|.+.|+++.+.. |+. ..+.+.|++++|.+.++.+..... .+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHhcC
Confidence 5555555555555555555555432 221 234444556666666666555422 244555556666666666
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 293 IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGR 372 (493)
Q Consensus 293 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 372 (493)
+++|+..|+++.+... .+..++..+...|...|++++|...++...+... .+...+..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666666666655422 2455666666666666666666666666655432 2355566666666666666666666666
Q ss_pred hhhC
Q 011137 373 MKDD 376 (493)
Q Consensus 373 ~~~~ 376 (493)
+.+.
T Consensus 233 a~~~ 236 (258)
T 3uq3_A 233 ARTK 236 (258)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-14 Score=138.56 Aligned_cols=376 Identities=10% Similarity=0.024 Sum_probs=246.3
Q ss_pred HHhhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC--
Q 011137 78 RLWNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDY---RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG-- 152 (493)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 152 (493)
.-..+.+.|++.|+.+.... ++..+..+...+...|++ ++|...|++.... +...+..+...+...+
T Consensus 14 ~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~ 85 (452)
T 3e4b_A 14 LKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGA 85 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----CCTGGGTCC--------------------------------CHHHHHHHHHTC--C
T ss_pred HhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCC
Confidence 33467789999998886543 445666677777778888 8999999988754 5556666666555555
Q ss_pred ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH---HHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 153 ---KADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA---YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 153 ---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
++++|+..|++..+.|. ...+..|...|...+..+.+ .+.+..... ..+...+..+...|...+.++++
T Consensus 86 ~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~--~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 86 TEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQA--AGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp CHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHH--HTCTTHHHHHHHHHHHHTCGGGG
T ss_pred CCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcccC
Confidence 78999999999998763 23677777888776654443 333433322 12567888889999988866655
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHH
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAG---QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV----GEIKRARNV 299 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~ 299 (493)
......+.+.-...+...+..+...|.+.| +.++|++.|++..+.|.. +...+..|...|... +++++|++.
T Consensus 161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~ 239 (452)
T 3e4b_A 161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQAL 239 (452)
T ss_dssp HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 555333332211223348888999999999 999999999999998754 666556777777655 799999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-----CHHHHHHHHH
Q 011137 300 FDGMVNGGVLPSVATYNAMIQV-L--CKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG-----EMERALEFVG 371 (493)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~ 371 (493)
|++.. . -+...+..+... | ...++.++|...|++..+.| +...+..+...|. .| ++++|+.+|+
T Consensus 240 ~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 240 LEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 99987 3 356667777776 4 56899999999999999886 6677777777776 55 9999999999
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc-cCCcccHHHHHHHHHHH
Q 011137 372 RMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV-RKKSDDLLVAGKLLIEM 446 (493)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~~~~A~~~~~~m 446 (493)
+.. .| +...+..|...|.. ..++++|...|++..+.| +......|...|.. .|-..+..+|..+++..
T Consensus 312 ~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 384 (452)
T 3e4b_A 312 KAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA 384 (452)
T ss_dssp TTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred HHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 988 44 67788888888876 349999999999999876 34455566666653 12223344499999999
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 447 VDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 447 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
.+.|. ++.......+......++..+|.++.+...+
T Consensus 385 ~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 385 KAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 98873 3333333333333334566777777765444
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-13 Score=120.15 Aligned_cols=224 Identities=8% Similarity=0.005 Sum_probs=143.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYT 281 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 281 (493)
+..++..+...+...|++++|++.|++..+.+ +..++..+...+.. .+++++|.+.|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44455566666666666666666666666522 34555566666666 666666666666666654 555666
Q ss_pred HHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHH
Q 011137 282 TIVHGFGV----VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCK----KDSVENAILVFEEMVGKGYMPNSTTYNVV 353 (493)
Q Consensus 282 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 353 (493)
.+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 66666666 666677776666666653 55566666666666 667777777776666654 44555566
Q ss_pred HHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Q 011137 354 IRGLCH----TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSGVCLPNLDTYNILIS 425 (493)
Q Consensus 354 i~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 425 (493)
...|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666665 667777777777776653 45566667777776 777777777777776653 3556666666
Q ss_pred HHhc----cCCcccHHHHHHHHHHHHHCC
Q 011137 426 SMFV----RKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 426 ~~~~----~~~~~~~~~A~~~~~~m~~~g 450 (493)
.|.. .++.++ |.+.+++..+.|
T Consensus 227 ~~~~g~~~~~~~~~---A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQ---AIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTT---HHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHH---HHHHHHHHHHcC
Confidence 6666 667777 777777776653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-14 Score=133.45 Aligned_cols=218 Identities=10% Similarity=0.028 Sum_probs=127.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK-ADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
+...|+.+..++.+.|++++|+..+++.....+ -+..+|..+..++...|+ +++|+..|+++.+.. +.+...|+.+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 345666666666677777777777777666543 356666666666666775 777777777666653 34556666666
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR-AGQIE 259 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~ 259 (493)
.++...|++++|+..|++.....+.+..+|..+..++...|++++|+..++++++.... +...|+.+..++.+ .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 66666677777766666666555556666666666666666666666666666665443 55666666666666 44435
Q ss_pred HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 011137 260 EA-----WRFFLEMKKRKCEIDVVTYTTIVHGFGVVG--EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK 325 (493)
Q Consensus 260 ~a-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 325 (493)
+| +..+++....... +...|..+...+...| ++++|++.+.++ +. .+.+...+..+..+|.+.
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 55 3445555444322 4445555555555544 345555555444 21 222334444444444443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.3e-14 Score=127.66 Aligned_cols=229 Identities=12% Similarity=0.065 Sum_probs=101.5
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcC
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP--NLTTYNIVLKGYFRAG 256 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g 256 (493)
....+...|++++|...|++.....+.+...+..+...+...|++++|++.+++..+.+..+ ....|..+...+...|
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 33344444444444444444443333344444444444444444444444444444421111 1122444444444445
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFE 336 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 336 (493)
++++|++.+++..+.... +..++..+...|...|++++|++.|++..+.. +.+...+..+...+...+++++|...++
T Consensus 89 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 166 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV 166 (272)
T ss_dssp CHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555444443222 33444445555555555555555555444431 1233344444412222335555555555
Q ss_pred HHHhCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 337 EMVGKGYMPNSTTYNVVIRGLCHTGE---MERALEFVGRMKDDE-CEPN------VQTYNILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 337 ~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~ 406 (493)
++.+.... +...+..+..++...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.+.|+
T Consensus 167 ~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 167 KVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp HHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 55443211 23344444444444444 444555554444320 0111 1345555566666666666666666
Q ss_pred HHhc
Q 011137 407 KMGS 410 (493)
Q Consensus 407 ~~~~ 410 (493)
++.+
T Consensus 246 ~al~ 249 (272)
T 3u4t_A 246 NILA 249 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6655
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.4e-14 Score=127.53 Aligned_cols=244 Identities=11% Similarity=0.040 Sum_probs=148.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcc----hHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI----SYNVIA 214 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~ 214 (493)
..+......+...|++++|+..|+++.+.. +.+...+..+..++...|++++|...+++... .+++.. +|..+.
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYG 81 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHH
Confidence 344555666677777777777777776643 33444666666777777777777777776655 222332 266777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 011137 215 NGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294 (493)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 294 (493)
..+...|++++|++.|++..+.... +..++..+...+...|++++|.+.+++..+.. +.+...+..+...+...++++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~ 159 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYV 159 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777777665433 45667777777777777777777777766652 235556666662333334777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCC-CCCC------hhhHHHHHHHHHhcCCHH
Q 011137 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS---VENAILVFEEMVGKG-YMPN------STTYNVVIRGLCHTGEME 364 (493)
Q Consensus 295 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~~~~~~~~~ 364 (493)
+|.+.|+++.+... .+...+..+..++...|+ +++|...+++..+.. ..|+ ...|..+...|...|+++
T Consensus 160 ~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 160 KADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 77777777766422 235566666666666666 666777776665441 1122 135556666667777777
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHH
Q 011137 365 RALEFVGRMKDDECEPNVQTYNIL 388 (493)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~~l 388 (493)
+|.+.++++.+.. +-+...+..+
T Consensus 239 ~A~~~~~~al~~~-p~~~~a~~~l 261 (272)
T 3u4t_A 239 KADAAWKNILALD-PTNKKAIDGL 261 (272)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccHHHHHHHh
Confidence 7777777776653 3334444333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.9e-13 Score=121.79 Aligned_cols=222 Identities=12% Similarity=0.047 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL----VKRTNKALEVLKEMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 173 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (493)
...+..+...+...|++++|...|++... +.+..++..+...|.. .+++++|++.|++..+.+ +...+..+
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 80 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 80 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHH
Confidence 33444444445555555555555544433 2233445555555555 555555555555555543 44555555
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 249 LKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV----VGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 249 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
...|.. .+++++|++.+++..+.+ +...+..+...|.. .+++++|++.|++..+.+ +...+..+..
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 154 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 154 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHH
Confidence 555555 566666666666655543 45555555566655 666666666666666543 4445555555
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 011137 321 VLCK----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH----TGEMERALEFVGRMKDDECEPNVQTYNILIRYF 392 (493)
Q Consensus 321 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 392 (493)
.|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|+..+++..+.+ +...+..+...|
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~ 228 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 5555 666666666666666553 34555556666666 666777777776666653 255566666666
Q ss_pred Hh----cCCHHHHHHHHHHHhcC
Q 011137 393 CD----AGEIERGLELFEKMGSG 411 (493)
Q Consensus 393 ~~----~g~~~~a~~~~~~~~~~ 411 (493)
.. .+++++|.+.|++..+.
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHc
Confidence 66 66777777777666664
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-14 Score=131.46 Aligned_cols=250 Identities=10% Similarity=0.076 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC-HHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK-VEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
..+|..+...+...|++++|++.++++++.. +.+..+|+.+..++...|+ +++|+..|++.....+.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567778888889999999999999999865 5578889999999999996 9999999999888778888999999999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV-VGEIKR 295 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~ 295 (493)
+...|++++|+..|+++++.... +...|..+..++.+.|++++|+..++++++.... +...|+.+..++.. .|..++
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchH
Confidence 99999999999999999987655 7889999999999999999999999999998654 78899999999988 666577
Q ss_pred H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-------
Q 011137 296 A-----RNVFDGMVNGGVLPSVATYNAMIQVLCKKD--SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG------- 361 (493)
Q Consensus 296 A-----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~------- 361 (493)
| ++.|++.+.... -+...|..+..++...| ++++|.+.+.++ +. ...+...+..+..+|.+.|
T Consensus 254 A~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccch
Confidence 7 588888887533 36778888888898888 689999999888 33 2346678888888888864
Q ss_pred --CHHHHHHHHHHh-hhCCCCCCHHHHHHHHHHHHh
Q 011137 362 --EMERALEFVGRM-KDDECEPNVQTYNILIRYFCD 394 (493)
Q Consensus 362 --~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 394 (493)
..++|+++++++ .+.. +.....|..+...+..
T Consensus 331 ~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence 258999999999 6553 4456677777776654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.7e-14 Score=138.09 Aligned_cols=352 Identities=12% Similarity=0.052 Sum_probs=236.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA---DRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.+...+.+.|++++|.++|++..+.| +...+..+...|...|+. ++|++.|++..+. +...+..+..++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 35677788999999999999998776 344555566667778888 8999999998864 5566677777555
Q ss_pred ccC-----CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 185 KEK-----KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN---KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 185 ~~g-----~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
..+ +.++|...|++..... +...+..|...|...+..+ ++.+.+......| +...+..+...|...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQG 155 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHT
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCC
Confidence 555 7889999998876543 4457888888888766544 4555555555544 3456677888888888
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHH
Q 011137 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG---EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK----DSVE 329 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~----~~~~ 329 (493)
.++++......+.+.-...++..+..|...|...| +.++|++.|++..+.|. ++...+..+...|... ++.+
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHH
Confidence 55544444333322212224448888999999999 99999999999999865 3566556777777665 7999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-----CHHHH
Q 011137 330 NAILVFEEMVGKGYMPNSTTYNVVIRG-L--CHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG-----EIERG 401 (493)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~a 401 (493)
+|...|+... .| +...+..+... + ...+++++|+.+|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999988 33 55566666666 3 46899999999999999876 6778888888887 55 99999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHH
Q 011137 402 LELFEKMGSGVCLPNLDTYNILISSMFVR-KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL----IGNQGLAKE 476 (493)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~ 476 (493)
.+.|++.. . -+...+..|...|... |-..+..+|.++|++..+.|. ++ ....|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~-~~--A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ-NS--ADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC-TT--HHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh-HH--HHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999988 4 3677788888777652 212233349999999998773 33 34445555543 458999999
Q ss_pred HHHHHHhcCCC
Q 011137 477 ILRLQSRCGRL 487 (493)
Q Consensus 477 ~~~~~~~~g~~ 487 (493)
+++...+.|..
T Consensus 380 ~~~~A~~~g~~ 390 (452)
T 3e4b_A 380 FSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHTTCCH
T ss_pred HHHHHHHCCCH
Confidence 99999888764
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.7e-15 Score=131.37 Aligned_cols=221 Identities=11% Similarity=-0.044 Sum_probs=128.1
Q ss_pred cCChHHHHHHHHHHhhCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011137 116 LRDYRTVWTLVHRMKSLSLG---PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 192 (493)
.|++++|...++++.+.... .+..++..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 46677777777777665321 134566667777777777777777777776653 34566677777777777777777
Q ss_pred HHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011137 193 YNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 272 (493)
...|++.....+.+..++..+...+...|++++|.+.++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 777776665555566667777777777777777777777766542 333333333344455566666666665555542
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP---SVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
. ++...+. ++..+...++.++|.+.+++..+..... +..++..+...|...|++++|...++++.+.
T Consensus 175 ~-~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 244 (275)
T 1xnf_A 175 D-KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 244 (275)
T ss_dssp C-CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred C-cchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 2 2222232 4555555555666666665554321100 1234444555555555555555555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.2e-14 Score=122.24 Aligned_cols=200 Identities=8% Similarity=-0.002 Sum_probs=146.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
+..|..+...+...|++++|...++++..... .+..++..+...+...|++++|.+.++++.+.. +.+...+..+..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 45677777888888889988888888877643 467788888888888888888888888887654 3466777777788
Q ss_pred HHccCCHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRG--KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
+...|++++|...++++.. ..+.+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 8888888888888877766 44445566777777777777777777777777665432 45667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
|...++++.+... .+...+..+...+...|+.++|.+.++++.+.
T Consensus 194 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 194 ARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777766533 35666666777777777777777777776654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=7.5e-14 Score=122.80 Aligned_cols=201 Identities=12% Similarity=0.050 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.+++.....+.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3456666677777777777777777776643 345666677777777777777777777766655555666666777777
Q ss_pred HhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 296 (493)
...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHH
Confidence 77777777777777766522233 344556666666666777777777666665532 2455666666666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 297 RNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
...++++.+... .+...+..+...+...|+.++|...++.+.+.
T Consensus 195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666666655422 34555555666666666666666666666554
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-13 Score=118.66 Aligned_cols=196 Identities=9% Similarity=-0.019 Sum_probs=75.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|++.++.+.+.. +.+...+..+..++...|++++|...+++.....+.+..++..+...+...
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~ 89 (225)
T 2vq2_A 11 KTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGR 89 (225)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence 3333333444444444444444333321 122333333344444444444444444433332233333344444444444
Q ss_pred -CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 011137 221 -KRTNKALEVLKEMVDRGLNPN-LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARN 298 (493)
Q Consensus 221 -~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 298 (493)
|++++|.+.++++.+.+..|+ ...+..+..++...|++++|...++++.+.... +...+..+...+...|++++|.+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444433111111 233334444444444444444444444333211 23334444444444444444444
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
.++++.+.....+...+..+...+...|+.++|..+++.+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 169 YFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp HHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 4444433211023333333333334444444444444443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-13 Score=118.92 Aligned_cols=204 Identities=13% Similarity=0.041 Sum_probs=178.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.++..|..+...+...|++++|...++++..... .+...+..+...+...|++++|.+.++++.+.. +.+..++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 82 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHH
Confidence 34677899999999999999999999999988653 568899999999999999999999999998764 4577889999
Q ss_pred HHHHHcc-CCHHHHHHHHHHhhc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011137 180 LDLLCKE-KKVEKAYNLFKVFRG--KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG 256 (493)
Q Consensus 180 l~~~~~~-g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g 256 (493)
..++... |++++|...++++.. ..+.+...+..+...+...|++++|.+.++++.+.... +...+..+..++.+.|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcC
Confidence 9999999 999999999999887 34445678999999999999999999999999876543 5788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 257 QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999988754247788888889999999999999999998764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-14 Score=125.87 Aligned_cols=201 Identities=10% Similarity=0.080 Sum_probs=132.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
.+..|..+...+...|++++|...++++.+... .+..++..+...+...|++++|+..++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 556677777778888888888888888877543 467777888888888888888888888877653 346677777777
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 261 (493)
++...|++++|...++++....+.+...+..+...+...|++++|.+.++++.+.... +...+..+...+.+.|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence 8888888888888887776666666777777777777788888888877777665332 566677777777777777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 262 WRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
.+.++++.+... .+..++..+..+|...|++++|.+.++++.+.
T Consensus 179 ~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 179 LSQFAAVTEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 777777766532 25666677777777777777777777776664
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-15 Score=132.84 Aligned_cols=59 Identities=12% Similarity=-0.102 Sum_probs=22.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 234 (493)
+..+..++...|++++|...|++.....+.+..+|..+...+...|++++|.+.|+++.
T Consensus 46 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al 104 (275)
T 1xnf_A 46 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104 (275)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 33333333333444444433333333323333333333333333333333333333333
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-14 Score=124.69 Aligned_cols=121 Identities=17% Similarity=0.058 Sum_probs=40.9
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
..+...|++++|...|++.....+.+...+..+...+...|++++|++.++++.+.... +...+..+...+...|++++
T Consensus 31 ~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 109 (243)
T 2q7f_A 31 GRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGNVYVVKEMYKE 109 (243)
T ss_dssp -----------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHHHHHHhccHHH
Confidence 33333333443333333333333333333333333333444444444444433332211 23333333333444444444
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
|.+.++++.+... .+...+..+...+...|++++|...++++
T Consensus 110 A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 151 (243)
T 2q7f_A 110 AKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRA 151 (243)
T ss_dssp HHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4444443333321 12333333333333444444444444333
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.5e-14 Score=133.61 Aligned_cols=304 Identities=9% Similarity=-0.016 Sum_probs=164.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCC-CC
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT----QKTFAIIAERYVSAGKADRAVKIFLSMHEH----GCR-QS 172 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~ 172 (493)
....+......+...|++++|...|++....+. .+ ..++..+...+...|++++|...+++.... +.. ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 444555555666666666666666666655432 12 234555566666666666666666654421 100 11
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011137 173 LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252 (493)
Q Consensus 173 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 252 (493)
..++..+...+...|++++|...+++.....+.... ......++..+...+
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----------------------------~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND-----------------------------KVGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-----------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-----------------------------ccchHHHHHHHHHHH
Confidence 234444455555555555555555443321000000 000122444444555
Q ss_pred HhcCC--------------------HHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 253 FRAGQ--------------------IEEAWRFFLEMKKR----K-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 253 ~~~g~--------------------~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
...|+ +++|.+.+++.... + ......++..+...|...|++++|.+.+++..+..
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 55555 55555555443321 1 01113345556666666666666666666654320
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 308 V-LPS----VATYNAMIQVLCKKDSVENAILVFEEMVGK----GYMP-NSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 308 ~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
. .++ ..++..+...|...|++++|...+++..+. +..+ ...++..+...+...|++++|...+++..+..
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 011 225666677777777777777777766532 1110 13466677777888888888888887776531
Q ss_pred C-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCC-CCHHHHHHHHHHHhccCCccc
Q 011137 378 C-EPN----VQTYNILIRYFCDAGEIERGLELFEKMGSG----VCL-PNLDTYNILISSMFVRKKSDD 435 (493)
Q Consensus 378 ~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-p~~~~~~~li~~~~~~~~~~~ 435 (493)
. ..+ ..++..+...|...|++++|.+.+++..+. +.. ....++..+...+...|+...
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 0 111 456778888888889999988888876553 111 124556667777777666543
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.2e-14 Score=134.24 Aligned_cols=279 Identities=10% Similarity=0.003 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQ----KTFAIIAERYVSAGKADRAVKIFLSMHEH----G-CRQSL 173 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~ 173 (493)
...+..+...+...|++++|...|++..+.+. .+. .++..+...|...|++++|+..+++..+. + .+...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 34455566677777888888888877776543 222 45666777777777777777777766542 1 01223
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCcchHHHHHHHHHhcCC----------hhHHHHHHHHHHhCC
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGK------FKADVISYNVIANGWCLVKR----------TNKALEVLKEMVDRG 237 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~m~~~g 237 (493)
.++..+...|...|++++|...+++.... .+....++..+...|...|+ .++|...
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~-------- 198 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA-------- 198 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH--------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH--------
Confidence 44555556666666666666665544321 01112234444444444444 0000000
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC
Q 011137 238 LNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----K-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-PS 311 (493)
Q Consensus 238 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 311 (493)
+++|.+.+++..+. + ......++..+...|...|++++|++.+++..+.... .+
T Consensus 199 --------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 199 --------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred --------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence 44444444443321 0 0112235555566666666666666666665432100 01
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----C-
Q 011137 312 ----VATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-----PNSTTYNVVIRGLCHTGEMERALEFVGRMKDD----E- 377 (493)
Q Consensus 312 ----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~- 377 (493)
..++..+...|...|++++|...+++..+.... ....++..+...+...|++++|...+++.... +
T Consensus 259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 338 (411)
T 4a1s_A 259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD 338 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence 125566666777777777777777665543100 11345666777777778888888777776543 1
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 378 CEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 378 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
......++..+...|...|++++|.+.+++..+
T Consensus 339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 011134667777888888888888888887766
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.5e-14 Score=135.37 Aligned_cols=289 Identities=10% Similarity=0.041 Sum_probs=175.0
Q ss_pred HHhhChHHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHH
Q 011137 78 RLWNHALKALHFFNILSYHPTYAHS----PSSFDHAIDLAARLRDYRTVWTLVHRMKSL----SLGP-TQKTFAIIAERY 148 (493)
Q Consensus 78 ~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 148 (493)
....+.+.|+.+|+.+.... +.+ ..+|..+...+...|++++|...+++.... +..+ ...++..+...+
T Consensus 20 ~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 20 CKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34567899999999886543 223 357888999999999999999999987543 2111 245788889999
Q ss_pred HHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHccCC--------------------HHHHHHHHHHhhcCC
Q 011137 149 VSAGKADRAVKIFLSMHEHGC-RQS----LNSFNTILDLLCKEKK--------------------VEKAYNLFKVFRGKF 203 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~--------------------~~~A~~~~~~~~~~~ 203 (493)
...|++++|+..+++..+... ..+ ..++..+...+...|+ +++|...+++....
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~- 176 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL- 176 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH-
Confidence 999999999999998875311 011 3356666666776776 55555555443211
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCH
Q 011137 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-----EIDV 277 (493)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~ 277 (493)
+. ..+..+ ...++..+...+...|++++|...+++..+... ....
T Consensus 177 --------------------------~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 227 (406)
T 3sf4_A 177 --------------------------VT---ALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAER 227 (406)
T ss_dssp --------------------------HH---HTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HH---hccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 00 001000 123445555555555666666655555443210 0012
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----h
Q 011137 278 VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-PS----VATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-PN----S 347 (493)
Q Consensus 278 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~ 347 (493)
.++..+...|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+.... .+ .
T Consensus 228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 307 (406)
T 3sf4_A 228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 307 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 25556666666666666666666665432100 01 345666777777777777777777766543100 11 4
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDD----EC-EPNVQTYNILIRYFCDAGEI 398 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~ 398 (493)
.++..+...|...|++++|...+++..+. +. .....++..+...+...|+.
T Consensus 308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 46667777888888888888888876543 11 11234555666666666654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.2e-14 Score=134.21 Aligned_cols=265 Identities=11% Similarity=0.061 Sum_probs=161.0
Q ss_pred HhhChHHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhC----C-CCCCHHHHHHHHHHHH
Q 011137 79 LWNHALKALHFFNILSYHPTYAHSP----SSFDHAIDLAARLRDYRTVWTLVHRMKSL----S-LGPTQKTFAIIAERYV 149 (493)
Q Consensus 79 ~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~ 149 (493)
...+.+.|+..|+.+.... +.+. ..|..+...+...|++++|...+++.... + ......++..+...|.
T Consensus 60 ~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 3467899999999886643 2343 57889999999999999999999997653 1 1123467888999999
Q ss_pred HcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHccCC-----------------HHHHHHHHHHhhcCC----
Q 011137 150 SAGKADRAVKIFLSMHEH----G-CRQSLNSFNTILDLLCKEKK-----------------VEKAYNLFKVFRGKF---- 203 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~g~-----------------~~~A~~~~~~~~~~~---- 203 (493)
..|++++|+..+++..+. + .+....++..+..+|...|+ +++|...+++.....
T Consensus 138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999988753 1 12234577888888999999 777777766543210
Q ss_pred --CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 204 --KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280 (493)
Q Consensus 204 --~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 280 (493)
+....++..+...+...|++++|++.+++..+.... .+. .....++
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~ 266 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR-------------------------------AAERRAN 266 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc-------------------------------HHHHHHH
Confidence 011124444445555555555555555444322100 000 0001244
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC----C-CCChhhH
Q 011137 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVL-----PSVATYNAMIQVLCKKDSVENAILVFEEMVGKG----Y-MPNSTTY 350 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~ 350 (493)
..+...|...|++++|.+.|++..+.... ....++..+...|...|++++|...+++..+.. . .....++
T Consensus 267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 346 (411)
T 4a1s_A 267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC 346 (411)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Confidence 45555555555555555555554432100 013445556666666666666666666554421 0 0112356
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 351 NVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 351 ~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..+...|...|++++|...+++..+.
T Consensus 347 ~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 347 WSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 66677777777777777777776654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=127.00 Aligned_cols=275 Identities=8% Similarity=0.017 Sum_probs=145.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CCCHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT----QKTFAIIAERYVSAGKADRAVKIFLSMHEH----GC-RQSLNS 175 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~ 175 (493)
.+......+...|++++|...++++.+... .+ ...+..+...+...|++++|++.+++.... +. +....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGT-EDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 344455666777777777777777766532 22 345666777777777777777777665432 11 112344
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCC--CC----cchHHHHHHHHHhcCC--------------------hhHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFK--AD----VISYNVIANGWCLVKR--------------------TNKALEV 229 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~ 229 (493)
+..+...+...|++++|...+++.....+ .+ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 55566666666666666666655432111 01 1245555555555555 5555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--
Q 011137 230 LKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-- 306 (493)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-- 306 (493)
+++..... ...+ ......++..+...+...|++++|.+.+++..+.
T Consensus 166 ~~~a~~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 166 YEENLSLV-------------------------------TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-------------------------------HhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 54432210 0000 0011223444444455555555555555444321
Q ss_pred --CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--
Q 011137 307 --GV-LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYM-PN----STTYNVVIRGLCHTGEMERALEFVGRMKDD-- 376 (493)
Q Consensus 307 --~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-- 376 (493)
+. .....++..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...++++...
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 00 001224555555666666666666666554432100 01 345556666677777777777777666543
Q ss_pred --C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 377 --E-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 377 --~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
+ ......++..+...|.+.|++++|...+++..+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 1 0111345667777777788888888887777663
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=127.18 Aligned_cols=274 Identities=11% Similarity=0.069 Sum_probs=172.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCcchH
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQS----LNSFNTILDLLCKEKKVEKAYNLFKVFRGK------FKADVISY 210 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~ 210 (493)
+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|...+++.... .+....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3444556667777777777777776643 222 245556666666667777766666554321 01112334
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGL-NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
..+...+...|++++|.+.+++..+... ..+. .....++..+...|..
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~ 135 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYHA 135 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCc-------------------------------hHHHHHHHHHHHHHHH
Confidence 4444455555555555555444432100 0000 0012244445555555
Q ss_pred cCC--------------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---
Q 011137 290 VGE--------------------IKRARNVFDGMVNG----GV-LPSVATYNAMIQVLCKKDSVENAILVFEEMVGK--- 341 (493)
Q Consensus 290 ~g~--------------------~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 341 (493)
.|+ +++|.+.+++.... +. .....++..+...+...|++++|...+++..+.
T Consensus 136 ~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 136 KGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 555 66666665554321 11 112447788889999999999999999887643
Q ss_pred -CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhcCC--
Q 011137 342 -GY-MPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC-EPN----VQTYNILIRYFCDAGEIERGLELFEKMGSGV-- 412 (493)
Q Consensus 342 -~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 412 (493)
+. ......+..+...+...|++++|...+++...... ..+ ..++..+...|...|++++|...+++..+..
T Consensus 216 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 295 (338)
T 3ro2_A 216 FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE 295 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence 11 11234788888899999999999999998875410 111 5678889999999999999999999886531
Q ss_pred --CC-CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHC
Q 011137 413 --CL-PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDR 449 (493)
Q Consensus 413 --~~-p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~ 449 (493)
.. ....++..+...+...|++++ |...+++..+.
T Consensus 296 ~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~a~~~ 332 (338)
T 3ro2_A 296 LKDRIGEGRACWSLGNAYTALGNHDQ---AMHFAEKHLEI 332 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHH---HHHHHHHHHHC
T ss_pred cCCcHHHHHHHHHHHHHHHHcCChHH---HHHHHHHHHHH
Confidence 11 124578889999999999999 99999998875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.1e-11 Score=112.50 Aligned_cols=219 Identities=11% Similarity=0.064 Sum_probs=108.3
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVS-------AGKA-------DRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555666655542 2355555555555442 3543 5566666665552112344455555555555
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVI-SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF-RAGQIEEAWR 263 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~a~~ 263 (493)
.|++++|..+|++.....+.+.. .|..++..+.+.|++++|.++|++..+.... +...|...+.... ..|+.++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666555543333333 5555555555555566666666555544321 2233322222211 2455555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 264 FFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG-VLP--SVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
+|+...+... .+...|..++..+.+.|++++|..+|++..... ..| ....|..++..+.+.|+.+.|..+++++.+
T Consensus 191 ~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~ 269 (308)
T 2ond_A 191 IFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555544422 244555555555555555555555555555531 222 233455555555555555555555555544
Q ss_pred C
Q 011137 341 K 341 (493)
Q Consensus 341 ~ 341 (493)
.
T Consensus 270 ~ 270 (308)
T 2ond_A 270 A 270 (308)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-12 Score=107.77 Aligned_cols=166 Identities=13% Similarity=0.141 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+..+|..+...|...|++++|++.|++..+.. +.+..++..+..+|.+.|++++|...++......+.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 44455555555555555555555555555443 33444555555555555555555555555544444444455555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRA 296 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 296 (493)
+...++++.|.+.+.+....... +...+..+..++.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555443322 3445555555555555555555555555554322 445555555555555555555
Q ss_pred HHHHHHHHH
Q 011137 297 RNVFDGMVN 305 (493)
Q Consensus 297 ~~~~~~~~~ 305 (493)
++.|++.++
T Consensus 161 ~~~~~~al~ 169 (184)
T 3vtx_A 161 VKYFKKALE 169 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.4e-12 Score=122.45 Aligned_cols=294 Identities=11% Similarity=0.066 Sum_probs=152.8
Q ss_pred HHhcCChHHHHHHHHHHhhC--CCCCCHH--HHHHHHHH--HHHcCCHHHHH-----------HHHHHHHhCCCCCCHHH
Q 011137 113 AARLRDYRTVWTLVHRMKSL--SLGPTQK--TFAIIAER--YVSAGKADRAV-----------KIFLSMHEHGCRQSLNS 175 (493)
Q Consensus 113 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~~ 175 (493)
+.+.+++++|..+++++.+. ....+.. .|..++.. ....+.++.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 34577888888888887553 2223333 22333221 11223333333 4555443321 11111
Q ss_pred ------HHHHHHHHHccCCHHHHHHHHHHhhcC---CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC--C---
Q 011137 176 ------FNTILDLLCKEKKVEKAYNLFKVFRGK---FKA---DVISYNVIANGWCLVKRTNKALEVLKEMVDRG--L--- 238 (493)
Q Consensus 176 ------~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~--- 238 (493)
+......+...|++++|...|++.... .+. ...++..+...|...|++++|+..+++..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 112444566677777777777765442 111 22456667777777777777777777665321 0
Q ss_pred C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CC
Q 011137 239 N-PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-----EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-----GG 307 (493)
Q Consensus 239 ~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~ 307 (493)
. ....+++.+..+|...|++++|.+.+++..+... .....++..+...|...|++++|++.|++..+ ..
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 0 0124566666677777777777777666554311 00123556666666666777777666666654 21
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCC
Q 011137 308 VLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK----GYMPNSTTYNVVIRGLCHTGE---MERALEFVGRMKDDECEP 380 (493)
Q Consensus 308 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~ 380 (493)
.+....++..+...|.+.|++++|...+++..+. +-......+..+...+...|+ +++|+.++++... .+.
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~ 337 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YAD 337 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHH
Confidence 1223445666666666666666666666655432 111111223445555555555 5555555554411 111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 381 NVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
....+..+...|...|++++|...+++..+
T Consensus 338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 233455566666666666666666665543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.52 E-value=8.1e-12 Score=113.32 Aligned_cols=219 Identities=10% Similarity=0.021 Sum_probs=179.0
Q ss_pred HHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011137 84 LKALHFFNILSYHPTYAHSPSSFDHAIDLAAR-------LRDY-------RTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149 (493)
Q Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (493)
..|+..|+.+.... |.++..|...+..+.. .|++ ++|..+|++....-.+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 45777777765532 5688899998888764 5886 899999999998422356779999999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH-hcCChhHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLN-SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC-LVKRTNKAL 227 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~ 227 (493)
..|++++|.++|+++.+.. +.+.. +|..++..+.+.|++++|..+|++..+..+.+...|...+.... ..|++++|.
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~ 189 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAF 189 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999853 22344 89999999999999999999999988776666666655444432 379999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK-CEI--DVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
++|++..+.... +...|..++..+.+.|++++|..+|++..... .+| ....|..++..+.+.|+.+.|..+++++.
T Consensus 190 ~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 190 KIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999876433 67889999999999999999999999999963 343 46789999999999999999999999998
Q ss_pred HC
Q 011137 305 NG 306 (493)
Q Consensus 305 ~~ 306 (493)
+.
T Consensus 269 ~~ 270 (308)
T 2ond_A 269 TA 270 (308)
T ss_dssp HH
T ss_pred HH
Confidence 75
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-12 Score=126.53 Aligned_cols=221 Identities=8% Similarity=-0.092 Sum_probs=107.1
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH-HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 011137 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV-EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
++++++.++...... +.+...+..+..++...|++ ++|+..|++..+..+.+..+|..+...|...|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455555555444322 23445555555555555555 5555555555444444445555555555555555555555555
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 011137 233 MVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312 (493)
Q Consensus 233 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 312 (493)
..+.. |+...+..+...+...+.-. ...+.|++++|++.|++..+... .+.
T Consensus 163 al~~~--p~~~~~~~lg~~~~~~~~~~--------------------------~~~~~g~~~~A~~~~~~al~~~p-~~~ 213 (474)
T 4abn_A 163 ALTHC--KNKVSLQNLSMVLRQLQTDS--------------------------GDEHSRHVMDSVRQAKLAVQMDV-LDG 213 (474)
T ss_dssp HHTTC--CCHHHHHHHHHHHTTCCCSC--------------------------HHHHHHHHHHHHHHHHHHHHHCT-TCH
T ss_pred HHhhC--CCHHHHHHHHHHHHHhccCC--------------------------hhhhhhhHHHHHHHHHHHHHhCC-CCH
Confidence 55432 33444444555554440000 00000444445554444444321 134
Q ss_pred HHHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 011137 313 ATYNAMIQVLCKK--------DSVENAILVFEEMVGKGYM--PNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382 (493)
Q Consensus 313 ~~~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (493)
..|..+..+|... |++++|...|++..+.... -+...|..+..+|...|++++|+..|+++.+.. +-+.
T Consensus 214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~ 292 (474)
T 4abn_A 214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWP 292 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 4444444455444 5555555555555543210 144555555555555666666666666555542 2344
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 011137 383 QTYNILIRYFCDAGEIERGLELF 405 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~ 405 (493)
..+..+...+...|++++|.+.+
T Consensus 293 ~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 293 EPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555555555556665555544
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-12 Score=121.66 Aligned_cols=167 Identities=13% Similarity=0.006 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC-CCCHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYM-P----NSTTYNVVIRGLCHTGEMERALEFVGRMKDD----EC-EPNVQ 383 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~ 383 (493)
+++.+...|...|++++|...+++..+.... . ...++..+..+|...|++++|...+++..+. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 3444444444444554444444443322000 0 0124444555555555555555555555441 11 22344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHH
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGSG----VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTF 458 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~ 458 (493)
++..+...|.+.|++++|...+++..+. +-+.....+..+...+...|+.+...+|+.++++. +..|+ ...+
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 5555666666666666666666555432 00111222444555555555532222255555554 22333 3455
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 459 NRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 459 ~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
..+...|...|++++|.++++...+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5566666777777777777665544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.5e-13 Score=126.84 Aligned_cols=215 Identities=8% Similarity=-0.010 Sum_probs=134.8
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 011137 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKA-DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFK 197 (493)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~ 197 (493)
++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555554432 24566666666666666776 77777776666543 3345666666666666777777777666
Q ss_pred HhhcCCCCCcchHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 011137 198 VFRGKFKADVISYNVIANGWCLV---------KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA--------GQIEE 260 (493)
Q Consensus 198 ~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~--------g~~~~ 260 (493)
+..... |+...+..+...+... |++++|++.|++..+.... +...|..+..+|... |++++
T Consensus 162 ~al~~~-p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC-KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC-CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC-CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 665543 3356666666666666 6777777777776655433 456666666666666 66777
Q ss_pred HHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 261 AWRFFLEMKKRKCE--IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 261 a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
|++.|++..+.... .+...|..+..+|...|++++|++.|++..+... .+...+..+..++...|++++|...+..+
T Consensus 240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77777776665320 3566677777777777777777777777666422 24556666666677777777766655433
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.50 E-value=5.4e-12 Score=105.00 Aligned_cols=168 Identities=11% Similarity=0.111 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
.++..|..+...+.+.|++++|...|++..+..+ -+..++..+..+|...|++++|+..+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 3678999999999999999999999999988754 578899999999999999999999999998764 45677888888
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
..+...++++.|...+++.....+.+...+..+...+.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence 99999999999999999988777778899999999999999999999999999987544 77889999999999999999
Q ss_pred HHHHHHHHHHC
Q 011137 261 AWRFFLEMKKR 271 (493)
Q Consensus 261 a~~~~~~~~~~ 271 (493)
|++.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999999886
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-10 Score=112.59 Aligned_cols=218 Identities=7% Similarity=-0.016 Sum_probs=128.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 261 AWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR-NVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMV 339 (493)
Q Consensus 261 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 339 (493)
+..+|++.... .+.....|...+..+...|+.++|. ++|++.... ++.+...|...+...-+.|+++.|..+|+.+.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44556655554 3335666666666666667766775 777777653 33355556666666667777777777777666
Q ss_pred hCC---------CCCC------------hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-CC
Q 011137 340 GKG---------YMPN------------STTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDA-GE 397 (493)
Q Consensus 340 ~~~---------~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 397 (493)
+.. ..|+ ...|...+....+.|+.+.|..+|.++.+.........|...+..-.+. ++
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCC
Confidence 531 0121 2245555666666677777777777776641112233333333333333 34
Q ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 011137 398 IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMP--RKFTFNRVLNGLLLIGNQGLAK 475 (493)
Q Consensus 398 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~ 475 (493)
.+.|.++|+...+. ++-+...|...+......|+.+. |..+|++.+.....+ ....|...+.--.+.|+.+.+.
T Consensus 486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~---AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~ 561 (679)
T 4e6h_A 486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQ---VKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVR 561 (679)
T ss_dssp CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHH---HHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 67777777777664 33455566666666666666666 777777777653211 2445666666666677777777
Q ss_pred HHHHHHHhc
Q 011137 476 EILRLQSRC 484 (493)
Q Consensus 476 ~~~~~~~~~ 484 (493)
++.+++.+.
T Consensus 562 ~v~~R~~~~ 570 (679)
T 4e6h_A 562 TLEKRFFEK 570 (679)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777666654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=3.1e-13 Score=122.75 Aligned_cols=244 Identities=13% Similarity=0.063 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--------
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEH-------GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-------- 202 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------- 202 (493)
..++..+...+...|++++|+..++++.+. ..+....++..+..+|...|++++|...+++....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 456666777777777777777777776642 12223445566666666666666666666554321
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 282 (493)
.+....++..+...+...|++++|.+.++++.+.... ......+.....+..
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~----------------------------~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREK----------------------------VLGKDHPDVAKQLNN 158 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH----------------------------HHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH----------------------------hcCCCChHHHHHHHH
Confidence 1112234445555555555555555555554432000 000000112233444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCChh
Q 011137 283 IVHGFGVVGEIKRARNVFDGMVNG------GVLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGK-------GYMPNST 348 (493)
Q Consensus 283 li~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~ 348 (493)
+...+...|++++|+++|+++.+. +..| ...++..+...|...|++++|...++++.+. ...+...
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 444444445555554444444332 0011 1224444555555555555555555554431 0111111
Q ss_pred -------hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 349 -------TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 349 -------~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.+..+...+...+.+.++...+....... +....++..+...|.+.|++++|.+.|++..+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 11112222233344444555555554432 33455677777777777777777777776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-13 Score=120.79 Aligned_cols=247 Identities=13% Similarity=0.058 Sum_probs=123.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDR-------GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR------K 272 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~ 272 (493)
+..++..+...+...|++++|..+++++.+. .......++..+...+...|++++|...++++... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3445666666677777777777777666542 11223345556666666666666666666655443 1
Q ss_pred -CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHH
Q 011137 273 -CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYN 351 (493)
Q Consensus 273 -~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 351 (493)
.+....++..+...|...|++++|.+.|+++.+.. ..............+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~----------------------------~~~~~~~~~~~~~~~~ 157 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR----------------------------EKVLGKDHPDVAKQLN 157 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH----------------------------HHHHCTTCHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH----------------------------HHhcCCCChHHHHHHH
Confidence 11123444555555555555555555555544320 0000000011223344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC-------CCCC--
Q 011137 352 VVIRGLCHTGEMERALEFVGRMKDD------E-CEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG-------VCLP-- 415 (493)
Q Consensus 352 ~li~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~p-- 415 (493)
.+...+...|++++|+.+++++.+. + .+....++..+...|...|++++|.+.++++.+. ...+
T Consensus 158 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 237 (311)
T 3nf1_A 158 NLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDEN 237 (311)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcch
Confidence 4555555555555555555555442 1 1112345556666666666666666666666542 0011
Q ss_pred -----CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 416 -----NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 416 -----~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
....+..+...+...+.+.+ +...+.+..... ..+..++..+..+|...|++++|.++++...+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~---a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 238 KPIWMHAEEREECKGKQKDGTSFGE---YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CCHHHHHHHHHHC-------CCSCC---CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHH---HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11223333344445566666 667777766531 233667888888999999999999999877653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.45 E-value=5e-11 Score=111.33 Aligned_cols=264 Identities=11% Similarity=0.043 Sum_probs=144.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHccCCHHHHHHHHHHhhcCCC--CC----cchHHHHHHH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSL----NSFNTILDLLCKEKKVEKAYNLFKVFRGKFK--AD----VISYNVIANG 216 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~~----~~~~~~l~~~ 216 (493)
.+...|++++|...+++........+. ..++.+...+...|++++|...+++.....+ .+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 344455555555555554443211111 1233444445555555555555544332100 01 1124455556
Q ss_pred HHhcCChhHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDR----GLN--P-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE----IDVVTYTTIVH 285 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~li~ 285 (493)
+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++....... ....++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 66666666666666665431 111 2 2234555666677777777777777766553221 12345666667
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhHHHHHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNGGVLPS-VATYN-----AMIQVLCKKDSVENAILVFEEMVGKGYMPN---STTYNVVIRG 356 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 356 (493)
.+...|++++|...+++.......++ ...+. ..+..+...|++++|...+++.......+. ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 77777777777777777654211111 11111 223346677888888888777665432111 2235566677
Q ss_pred HHhcCCHHHHHHHHHHhhhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 357 LCHTGEMERALEFVGRMKDD----ECEPNV-QTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+...|++++|...++..... +..++. ..+..+..++...|+.++|...+++...
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 77888888888888776543 211122 3566677778888888888888877765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-11 Score=115.57 Aligned_cols=232 Identities=8% Similarity=-0.038 Sum_probs=144.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC--C---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC--C---CC-CHHHHH
Q 011137 248 VLKGYFRAGQIEEAWRFFLEMKKRKC--E---IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG--V---LP-SVATYN 316 (493)
Q Consensus 248 l~~~~~~~g~~~~a~~~~~~~~~~~~--~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~---~~-~~~~~~ 316 (493)
....+...|++++|...+++..+... . ....++..+...|...|+++.|...+++..+.. . .+ ...+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445566777777777776655311 1 123456666667777777777777776655420 0 00 134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhh-----CCCCCCHHHHH
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGK----GYM-PNSTTYNVVIRGLCHTGEMERALEFVGRMKD-----DECEPNVQTYN 386 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 386 (493)
.+...|...|++++|...+++..+. +.. ....++..+..+|...|++++|...+++... .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 6777777777777777777766542 111 1124566677777888888888888887776 32 22366777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 011137 387 ILIRYFCDAGEIERGLELFEKMGSGV----CLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRV 461 (493)
Q Consensus 387 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l 461 (493)
.+...|.+.|++++|...+++..+.. -+.....+..+...+...++.+...+|+..+++ .+..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHH
Confidence 88888888888888888888776531 111233455555566666663333336666665 222333 3455667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh
Q 011137 462 LNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 462 ~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
...|...|++++|.+.++...+
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7788889999998888876654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.4e-11 Score=111.91 Aligned_cols=226 Identities=11% Similarity=0.085 Sum_probs=107.8
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCC--C----CcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CC-CC-CHHHHHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFK--A----DVISYNVIANGWCLVKRTNKALEVLKEMVDR----GL-NP-NLTTYNIV 248 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~p-~~~~~~~l 248 (493)
..+...|++++|...|++.....+ + ...++..+...|...|++++|...+++..+. +- .+ ...+++.+
T Consensus 109 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 109 MYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 344556666666666665543211 1 1234555666666666666666666655431 00 10 12345555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKR----KCE-IDVVTYTTIVHGFGVVGEIKRARNVFDGMVN-----GGVLPSVATYNAM 318 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l 318 (493)
..+|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|++.|++..+ .... ...++..+
T Consensus 189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~l 267 (378)
T 3q15_A 189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGL 267 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHH
Confidence 66666666666666666555442 100 1123445555555666666666666655544 2211 24445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKGY----MPNSTTYNVVIRGLCHTGE---MERALEFVGRMKDDECEPNVQTYNILIRY 391 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 391 (493)
...|.+.|++++|...+++..+... ......+..+...+...++ +.+|+..++.... .+.....+..+...
T Consensus 268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~~ 345 (378)
T 3q15_A 268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHHH
Confidence 5555566666666665555543211 1111223333333444444 4444444443211 01112334455555
Q ss_pred HHhcCCHHHHHHHHHHHh
Q 011137 392 FCDAGEIERGLELFEKMG 409 (493)
Q Consensus 392 ~~~~g~~~~a~~~~~~~~ 409 (493)
|...|++++|...|++..
T Consensus 346 y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH
Confidence 555555555555555543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-10 Score=108.94 Aligned_cols=271 Identities=10% Similarity=0.026 Sum_probs=188.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHH
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQK----TFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQS----LNSF 176 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~ 176 (493)
+......+...|++++|...+++........+.. ++..+...+...|++++|...+++...... ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444556677899999999999877654333332 456667778889999999999988764211 112 2335
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcC----CC---C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--C--CHHH
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGK----FK---A-DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--P--NLTT 244 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~----~~---~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~ 244 (493)
..+...+...|++++|...+++.... .. | ....+..+...+...|++++|...+++....... + ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777888899999999998876432 11 1 2345677888889999999999999988753221 1 2356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHhccCCHHHHHHHHHHHHHCCCCCC---HHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID--VVTYT----TIVHGFGVVGEIKRARNVFDGMVNGGVLPS---VATY 315 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~----~li~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~ 315 (493)
+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......++ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 77888889999999999999998865421111 11111 233457789999999999988765432211 2346
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 316 NAMIQVLCKKDSVENAILVFEEMVGK----GYMPNS-TTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 316 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..+...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++....
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 67788889999999999999887543 222222 25666677888999999999999888753
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.40 E-value=3.4e-11 Score=99.97 Aligned_cols=25 Identities=16% Similarity=0.247 Sum_probs=9.4
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
.+..+...+...|++++|.+.++++
T Consensus 78 ~~~~~a~~~~~~~~~~~A~~~~~~~ 102 (186)
T 3as5_A 78 VATVLGLTYVQVQKYDLAVPLLIKV 102 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3333333333333333333333333
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.1e-11 Score=98.85 Aligned_cols=166 Identities=13% Similarity=0.071 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDL 182 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 182 (493)
...|..+...+...|++++|...++++..... .+..++..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 45677888889999999999999999887643 578889999999999999999999999998764 4577888899999
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
+...|++++|.+.+++.....+.+...+..+...+...|++++|.+.++++.+.... +...+..+...+...|++++|.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988777777888888899999999999999999988876433 5677888888888888888888
Q ss_pred HHHHHHHHC
Q 011137 263 RFFLEMKKR 271 (493)
Q Consensus 263 ~~~~~~~~~ 271 (493)
+.++++.+.
T Consensus 165 ~~~~~~~~~ 173 (186)
T 3as5_A 165 PHFKKANEL 173 (186)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 888887664
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.2e-11 Score=122.08 Aligned_cols=164 Identities=14% Similarity=0.104 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
..+++.+...|.+.|++++|++.|++..+.. +.+...|+.+..+|.+.|++++|+..|++..+..+.+..+|+.+..++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3455555555555555555555555555442 234455555555555555555555555555444444455555555555
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 297 (493)
.+.|++++|++.|++..+.... +..+|..+..+|.+.|++++|++.|++..+.... +...+..+..+|...|++++|.
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHH
Confidence 5555555555555555544322 3445555555555555555555555555544322 3445555555555555555555
Q ss_pred HHHHHHH
Q 011137 298 NVFDGMV 304 (493)
Q Consensus 298 ~~~~~~~ 304 (493)
+.++++.
T Consensus 166 ~~~~kal 172 (723)
T 4gyw_A 166 ERMKKLV 172 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=6.1e-09 Score=103.26 Aligned_cols=392 Identities=10% Similarity=0.037 Sum_probs=265.7
Q ss_pred HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Q 011137 85 KALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK---ADRAVKIF 161 (493)
Q Consensus 85 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 161 (493)
..-.+-+.+...| .|..+|..++..+.+.++++.+..+|+.+... .+.+...|...+..-.+.|+ ++.+.++|
T Consensus 51 ~i~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 51 VIGKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp HHHHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 3334555556654 59999999999999999999999999999987 45788899999999888898 99999999
Q ss_pred HHHHhCC-CCCCHHHHHHHHHHHHccCCH--------HHHHHHHHHhhcC--C--CCCcchHHHHHHHHH---------h
Q 011137 162 LSMHEHG-CRQSLNSFNTILDLLCKEKKV--------EKAYNLFKVFRGK--F--KADVISYNVIANGWC---------L 219 (493)
Q Consensus 162 ~~~~~~~-~~~~~~~~~~ll~~~~~~g~~--------~~A~~~~~~~~~~--~--~~~~~~~~~l~~~~~---------~ 219 (493)
++..... .+|++..|...+....+.++. +...++|+..... . +.+...|...+.... .
T Consensus 127 eRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ee 206 (679)
T 4e6h_A 127 ARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE 206 (679)
T ss_dssp HHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHH
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHH
Confidence 9998753 138888998888766665543 3344677765432 2 224467887776544 2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------------CHHHHHHHHHHHHHC--CC----C------
Q 011137 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG-------------QIEEAWRFFLEMKKR--KC----E------ 274 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-------------~~~~a~~~~~~~~~~--~~----~------ 274 (493)
.++++.+.++|++++......-..+|......-...+ +++.|...+.++... ++ +
T Consensus 207 q~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~ 286 (679)
T 4e6h_A 207 QQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQA 286 (679)
T ss_dssp HHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTC
T ss_pred HhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccc
Confidence 3457888999999985322212234433222221111 123344444443221 11 1
Q ss_pred -----C-----C---HHHHHHHHHHHhccC-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-H
Q 011137 275 -----I-----D---VVTYTTIVHGFGVVG-------EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI-L 333 (493)
Q Consensus 275 -----~-----~---~~~~~~li~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~ 333 (493)
| + ...|...+..--..+ ..+.+..+|++.+.. ++.....|...+..+...|+.++|. .
T Consensus 287 ~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~ 365 (679)
T 4e6h_A 287 TESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITK 365 (679)
T ss_dssp CTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHH
T ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHH
Confidence 0 0 134555554433322 134566788888775 3447788888888888899999997 9
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC---------CCC------------CHHHHHHHHHHH
Q 011137 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE---------CEP------------NVQTYNILIRYF 392 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~ 392 (493)
+|+..... ++.+...|...+....+.|+++.|.++|+.+.... -.| ...+|...+...
T Consensus 366 il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~e 444 (679)
T 4e6h_A 366 YLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTM 444 (679)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHH
Confidence 99999875 33455567778888889999999999999988631 013 234688888888
Q ss_pred HhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-CCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 011137 393 CDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVR-KKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQ 471 (493)
Q Consensus 393 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 471 (493)
.+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+. |.++|+..++. +.-+...+...+.-....|+.
T Consensus 445 rR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~---Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~ 520 (679)
T 4e6h_A 445 KRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKT---ACKVLELGLKY-FATDGEYINKYLDFLIYVNEE 520 (679)
T ss_dssp HHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHH---HHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHH---HHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCH
Confidence 88999999999999998751111233443333222233 44677 99999999986 344566777888888889999
Q ss_pred HHHHHHHHHHHhcCC
Q 011137 472 GLAKEILRLQSRCGR 486 (493)
Q Consensus 472 ~~a~~~~~~~~~~g~ 486 (493)
+.|+.+|+...+...
T Consensus 521 ~~AR~lferal~~~~ 535 (679)
T 4e6h_A 521 SQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999998887643
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-11 Score=122.18 Aligned_cols=169 Identities=8% Similarity=-0.021 Sum_probs=152.5
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
|.++.+|+.+..++.+.|++++|...|++..+... -+..++..+...|.+.|++++|++.|++..+.. +.+...|+.+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 44678999999999999999999999999988753 468899999999999999999999999999865 4568899999
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE 259 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 259 (493)
..+|.+.|++++|++.|++..+..+.+..+|+.+...|.+.|++++|++.|++..+.... +...+..+..++...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHH
Confidence 999999999999999999988777778899999999999999999999999999987544 6788999999999999999
Q ss_pred HHHHHHHHHHHC
Q 011137 260 EAWRFFLEMKKR 271 (493)
Q Consensus 260 ~a~~~~~~~~~~ 271 (493)
+|.+.++++.+.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999888764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.9e-10 Score=98.05 Aligned_cols=206 Identities=11% Similarity=0.011 Sum_probs=159.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 101 HSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 101 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
.++..|......+.+.|++++|...|++.......++...+..+..++...|++++|++.|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 46788999999999999999999999999887655778888889999999999999999999999864 44667888999
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCc-------chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADV-------ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN---LTTYNIVLK 250 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~l~~ 250 (493)
.++...|++++|...|++.....+.+. ..|..+...+...|++++|++.|++..+. .|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999887666666 56888889999999999999999999875 444 456777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011137 251 GYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAM 318 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 318 (493)
++...| ...++++...+.. +...|.... ....+.+++|+..|++..+... -+..+...+
T Consensus 162 ~~~~~~-----~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p-~~~~~~~~l 220 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLSP-NRTEIKQMQ 220 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred HHHHHH-----HHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC-CCHHHHHHH
Confidence 776544 3445555554322 344444333 3345678999999999988532 234444433
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-10 Score=97.72 Aligned_cols=197 Identities=13% Similarity=0.020 Sum_probs=155.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
.++..+......+...|++++|+..|++..+...+++...+..+..++...|++++|+..|++.....+.+..+|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 46788888999999999999999999999987633677788789999999999999999999988877778889999999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNL-------TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHG 286 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~ 286 (493)
.+...|++++|++.+++..+.... +. ..|..+...+...|++++|++.+++..+.. +. +...+..+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHHHHH
Confidence 999999999999999999876443 44 457888889999999999999999998863 22 35677777777
Q ss_pred HhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 011137 287 FGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKG 342 (493)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 342 (493)
|...| ...++++...+. .+...|.... ....+.+++|...+++..+..
T Consensus 163 ~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 163 FYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 75544 344555544322 2344444333 334567899999999998863
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.5e-11 Score=107.39 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--------
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEH------G-CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK-------- 202 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-------- 202 (493)
..++..+...|...|++++|+..++++.+. + .+....++..+..+|...|++++|...|++....
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 344555555555556666665555555432 1 1122334555555666666666666665544322
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR------GLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---- 271 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 271 (493)
.+....++..+...+...|++++|.+.++++.+. +..| ...++..+..++...|++++|...++++.+.
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~ 202 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK 202 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 1222345666666666666666666666666543 1112 2345666666677777777777777666543
Q ss_pred ---CCCC-CHHHHHHHHHHHhccCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 272 ---KCEI-DVVTYTTIVHGFGVVGE------IKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 272 ---~~~~-~~~~~~~li~~~~~~g~------~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
...+ ....+..+...+...+. +..+...++..... .+....++..+...|...|++++|..++++..+
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 0111 12222222222222221 22222222221111 111234566777777778888888887777654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-10 Score=101.66 Aligned_cols=69 Identities=23% Similarity=0.133 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 011137 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNPN-LTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~ 262 (493)
++++|...|++. ...|...|++++|.+.|++..+. |-.++ ..+|+.+..+|.+.|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 366666665544 33455667777777776665432 21111 345666666666666666666
Q ss_pred HHHHHHHH
Q 011137 263 RFFLEMKK 270 (493)
Q Consensus 263 ~~~~~~~~ 270 (493)
..+++..+
T Consensus 98 ~~~~~Al~ 105 (292)
T 1qqe_A 98 DSLENAIQ 105 (292)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=8.2e-11 Score=104.91 Aligned_cols=225 Identities=13% Similarity=0.047 Sum_probs=155.9
Q ss_pred cCCHHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC--------CCCCcchHHHHHH
Q 011137 151 AGKADRAVKIFLSMHE-------HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK--------FKADVISYNVIAN 215 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~ 215 (493)
.|++++|+..+++..+ ...+....++..+..++...|++++|...+++.... .+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4555555555555443 222334667888999999999999999999876532 2334567899999
Q ss_pred HHHhcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDR------GLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR------K-CEIDVVTYT 281 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~ 281 (493)
.|...|++++|.+.+++..+. ...| ...++..+...+...|++++|...++++.+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 999999999999999998754 1112 3567888999999999999999999998775 1 222456788
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCCHHHH------HHHHHHHHhCCCCCCh
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNG-------GVLP-SVATYNAMIQVLCKKDSVENA------ILVFEEMVGKGYMPNS 347 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~li~~~~~~~~~~~a------~~~~~~~~~~~~~~~~ 347 (493)
.+...|...|++++|.+.++++.+. ...+ ....|..+...+...+....+ ...++.... ......
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHH
Confidence 8999999999999999999998753 1112 223344444444333332222 222222111 112234
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 348 TTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 348 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
..+..+...|...|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888999999999999999999998754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.22 E-value=3.9e-09 Score=93.01 Aligned_cols=58 Identities=10% Similarity=0.083 Sum_probs=22.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKRKC-EIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
.+..++...|++++|++++.+....+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444444444444444444333321 1123333333444444444444444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-09 Score=95.84 Aligned_cols=212 Identities=9% Similarity=-0.010 Sum_probs=131.1
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT---QKTFAIIAERYVSAGKADRAVKIFLSMHEHGC--RQSLN 174 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~ 174 (493)
+.++..+-.....+.+.|++++|...|+.+....+ .+ ..++..+..+|...|++++|+..|+.+.+... +....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 90 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGR-THEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ 90 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCS-CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-CCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence 34667777778888888999999999998887643 23 67788888888889999999999988887521 12244
Q ss_pred HHHHHHHHHHc--------cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 011137 175 SFNTILDLLCK--------EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYN 246 (493)
Q Consensus 175 ~~~~ll~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 246 (493)
.+..+..++.. .|++++|...|+++....|.+......+.... .+... -...+.
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~--------------~~~~~----~~~~~~ 152 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIR--------------ELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHH--------------HHHHH----HHHHHH
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHH--------------HHHHH----HHHHHH
Confidence 56677777777 88888888888887766555555443321111 00000 011234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhcc----------CCHHHHHHHHHHHHHCCCCCC--H
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKRKCEI--DVVTYTTIVHGFGVV----------GEIKRARNVFDGMVNGGVLPS--V 312 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~A~~~~~~~~~~~~~~~--~ 312 (493)
.+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|...|+++.+...... .
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 232 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLR 232 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHH
Confidence 55666667777777777777766653221 234555666666544 667777777777766422111 1
Q ss_pred HHHHHHHHHHHhcCCHHH
Q 011137 313 ATYNAMIQVLCKKDSVEN 330 (493)
Q Consensus 313 ~~~~~li~~~~~~~~~~~ 330 (493)
.+...+-..+.+.+++++
T Consensus 233 ~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 233 TAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 233444444444444443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=3.4e-10 Score=101.64 Aligned_cols=132 Identities=8% Similarity=-0.058 Sum_probs=70.6
Q ss_pred hHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----
Q 011137 209 SYNVIANGWCLV-KRTNKALEVLKEMVDRGLNP-N----LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDV----- 277 (493)
Q Consensus 209 ~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~p-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----- 277 (493)
+++.+...|... |++++|+..|++..+..... + ..++..+...+.+.|++++|+..+++..+.......
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 455566666664 66666666666654321100 1 234666666667777777777777766665332211
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 011137 278 -VTYTTIVHGFGVVGEIKRARNVFDGMVNGGVL-PS---VATYNAMIQVLC--KKDSVENAILVFEEMVG 340 (493)
Q Consensus 278 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~li~~~~--~~~~~~~a~~~~~~~~~ 340 (493)
..|..+..++...|++++|+..|++..+.... ++ ...+..++.++. ..+++++|+..|+.+..
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 14555666666677777777777666542111 00 112333444443 34556666666655544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.14 E-value=1.8e-08 Score=88.79 Aligned_cols=243 Identities=8% Similarity=0.054 Sum_probs=158.5
Q ss_pred HHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH
Q 011137 111 DLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE 190 (493)
Q Consensus 111 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 190 (493)
+-..-.|++..++.-.. +............+.++|...|+++.. ..-.|....+..+.. |...+
T Consensus 21 kn~fy~G~yq~~i~e~~---~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~--- 84 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIE---KFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK--- 84 (310)
T ss_dssp HHHHTTTCHHHHTHHHH---TSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT---
T ss_pred HHHHHhhHHHHHHHHHH---hcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc---
Confidence 44455788888777333 222223345555667888888887642 112333334443333 33322
Q ss_pred HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 191 KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 191 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
|+..|++.....+++..++..+..++...|++++|++++.+.+..|.. -+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 -a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 -NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp -CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 667777766554556666778888999999999999999998776541 256778888999999999999999999997
Q ss_pred HCCCCC-----CHHHHHHHHHHH--hc--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 270 KRKCEI-----DVVTYTTIVHGF--GV--VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 270 ~~~~~~-----~~~~~~~li~~~--~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
+. .| +..+...|+.++ .. .+++.+|..+|+++.+. .|+..+-..++.++.+.|++++|...++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 75 33 245555566553 22 33788888888888664 24433334444478888888888888886654
Q ss_pred CC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 341 KG---------YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 341 ~~---------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
.- -+-++.++..+|......|+ +|.+++.++.+.
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 20 02255566555555555666 777888888776
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.14 E-value=6e-08 Score=86.34 Aligned_cols=216 Identities=8% Similarity=-0.016 Sum_probs=94.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHhhcCCCCCcchHHHHHHHH----Hhc---CChhHH
Q 011137 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK--KVEKAYNLFKVFRGKFKADVISYNVIANGW----CLV---KRTNKA 226 (493)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~A 226 (493)
+|+++++.++... +.+..+|+.--.++...| +++++++.++.+....|.+..+|+.-...+ ... ++++++
T Consensus 51 ~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~E 129 (306)
T 3dra_A 51 RALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYRE 129 (306)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHH
T ss_pred HHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 4444444444432 223334444444444444 455555555444444444444444433333 222 444555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------HHHHHH
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIE--EAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE------IKRARN 298 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~~~A~~ 298 (493)
+++++++.+...+ +..+|+.-.-++.+.|.++ ++++.++++.+..+. |...|+.-...+...+. ++++++
T Consensus 130 L~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~ 207 (306)
T 3dra_A 130 FDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDEELN 207 (306)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHHHHH
Confidence 5555555544333 4444444444444444444 555555555544332 44444444433333333 455555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 299 VFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN-AILVFEEMVGKG--YMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
.+++++...+ -|...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+..++.+.|+.++|.++++.+.+
T Consensus 208 ~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 208 YVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 5555544422 244555555544444444222 223333333221 012334444444444444455555555554443
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2e-09 Score=91.22 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=33.1
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 253 (493)
+..+|.+.|++++|...|++.....|.+...|..+...+...|++++|+..|++..+..+. +..++..+..+|.
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~ 133 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYY 133 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 4444444444444444444444433444444444444444444444444444444443222 3334444444443
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-09 Score=95.04 Aligned_cols=209 Identities=15% Similarity=0.136 Sum_probs=134.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---cch
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS---LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD---VIS 209 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ 209 (493)
.+...+......+.+.|++++|+..|+.+.+.. +.+ ...+..+..++.+.|++++|...|+++....|.+ ..+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355666677777777888888888888877643 223 5566777777777888888888877776543322 345
Q ss_pred HHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 210 YNVIANGWCL--------VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYT 281 (493)
Q Consensus 210 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 281 (493)
+..+..++.. .|++++|+..|+++.+.... +......+.. +..+... -...+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence 6666777777 77777777777777664322 1111111111 1111100 011246
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCh--
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNGGVLP--SVATYNAMIQVLCKK----------DSVENAILVFEEMVGKGYMPNS-- 347 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------~~~~~a~~~~~~~~~~~~~~~~-- 347 (493)
.+...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|...++.+.+.. |+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~ 230 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPL 230 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChH
Confidence 67889999999999999999998753221 245677788888766 89999999999998863 333
Q ss_pred --hhHHHHHHHHHhcCCHHHH
Q 011137 348 --TTYNVVIRGLCHTGEMERA 366 (493)
Q Consensus 348 --~~~~~li~~~~~~~~~~~a 366 (493)
.....+-..+...++++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 3444455555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.14 E-value=3.1e-09 Score=82.68 Aligned_cols=129 Identities=11% Similarity=0.169 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.|..+...+...|++++|..+++++.+... .+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 345555556666666666666666554432 345555555555666666666666666555443 234445555555555
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
..|++++|.+.++.+....+.+...+..+...+...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 555555555555555444344444555555555555555555555555543
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=3e-09 Score=82.71 Aligned_cols=127 Identities=12% Similarity=0.230 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++....+.+...+..+...+...
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 3444455555555555555555554432 223444444445555555555555555544433333344444444444444
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
|++++|.+.++++.+.... +...+..+...+.+.|++++|.+.++++.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 4444444444444433211 23334444444444444444444444443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.13 E-value=9.2e-10 Score=110.88 Aligned_cols=171 Identities=9% Similarity=-0.052 Sum_probs=79.3
Q ss_pred HhcCChHHHHHHHHHHh--------hCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 114 ARLRDYRTVWTLVHRMK--------SLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 114 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
...|++++|.+.+++.. ... +.+...+..+...+...|++++|++.|+++.+.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 34455555555555544 221 1233444445555555555555555555554432 2334444445555555
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 265 (493)
.|++++|...|++..+..+.+...|..+..++.+.|++++ ++.|++..+.+.. +...|..+..++.+.|++++|++.|
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 5555555555555444444444455555555555555555 5555555443322 3344444555555555555555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
+++.+.+.. +...+..+..++..
T Consensus 558 ~~al~l~P~-~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 558 DEVPPTSRH-FTTARLTSAVTLLS 580 (681)
T ss_dssp HTSCTTSTT-HHHHHHHHHHHTC-
T ss_pred HhhcccCcc-cHHHHHHHHHHHHc
Confidence 544443211 23344444444433
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.10 E-value=6.9e-08 Score=85.94 Aligned_cols=220 Identities=10% Similarity=0.043 Sum_probs=153.8
Q ss_pred CCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----Hhc---CC
Q 011137 187 KKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK--RTNKALEVLKEMVDRGLNPNLTTYNIVLKGY----FRA---GQ 257 (493)
Q Consensus 187 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~----~~~---g~ 257 (493)
...++|+.+++.+....|.+..+|+.-...+...| ++++++++++.+....++ +..+|+.-...+ .+. ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 34467888888877766667777888888888877 888888888888876555 555665554444 444 67
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HH
Q 011137 258 IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK--RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDS------VE 329 (493)
Q Consensus 258 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~------~~ 329 (493)
+++++.+++.+.+.... +..+|+.-...+.+.|.++ ++++.++++++.+.. |..+|+.-...+.+.++ ++
T Consensus 126 ~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 88888888888877544 7777777777777777777 888888888776543 66777766666666665 77
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHH-HHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011137 330 NAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEME-RALEFVGRMKDDE--CEPNVQTYNILIRYFCDAGEIERGLELFE 406 (493)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 406 (493)
++++.++.++...+. |...|+.+-..+.+.|+.. .+..+...+.+.+ -..+...+..++..|.+.|+.++|.++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 777777777766443 6667777776676666633 3445555554432 13466777777777777788888888887
Q ss_pred HHhc
Q 011137 407 KMGS 410 (493)
Q Consensus 407 ~~~~ 410 (493)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.6e-09 Score=88.44 Aligned_cols=174 Identities=9% Similarity=0.050 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHh
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAI----------------IAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
+..+-.....+.+.|++++|...|++.....+ .+...|.. +..+|...|++++|+..|++..+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI-DRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH-HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444555667788888888888888877542 24456666 88899999999999999999988
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHH
Q 011137 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR--TNKALEVLKEMVDRGLNPNLTT 244 (493)
Q Consensus 167 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~ 244 (493)
.. +.+...+..+..++...|++++|...|++.....|.+..+|..+...|...|+ ...+...++.... ..|....
T Consensus 83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a 159 (208)
T 3urz_A 83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYA 159 (208)
T ss_dssp HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHH
T ss_pred HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHH
Confidence 65 55788899999999999999999999999888777788899999888876654 3445555555432 2333334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTT 282 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 282 (493)
+.....++...|++++|+..|++..+. .|+......
T Consensus 160 ~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~ 195 (208)
T 3urz_A 160 RYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKT 195 (208)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHH
Confidence 445566677788899999999888875 345444333
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.08 E-value=2e-08 Score=86.26 Aligned_cols=188 Identities=7% Similarity=-0.039 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGP--TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL---NSF 176 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~ 176 (493)
++..+..+...+.+.|++++|...|+++....+.. ....+..+..+|.+.|++++|+..|+++.+.. +.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 44566667777888899999999999988754321 14677888888999999999999999888653 1122 134
Q ss_pred HHHHHHHHc------------------cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 177 NTILDLLCK------------------EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 177 ~~ll~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
..+..++.. .|+.++|...|+++....|.+..++........ +...+
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~----- 146 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH-----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH-----
Confidence 444444443 567777888887777766655555433221110 00010
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCC
Q 011137 239 NPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID--VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGV 308 (493)
Q Consensus 239 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 308 (493)
......+...+.+.|++++|+..|+++.+...... ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01223567788889999999999999887643211 35678888999999999999999998887643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.7e-09 Score=107.49 Aligned_cols=186 Identities=9% Similarity=-0.000 Sum_probs=149.2
Q ss_pred HhcCChhHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 011137 218 CLVKRTNKALEVLKEMV--------DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV 289 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~--------~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 289 (493)
...|++++|++.+++.. +... .+...+..+..++...|++++|++.++++.+.... +...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence 77899999999999998 4332 25678888999999999999999999999887544 78899999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
.|++++|++.|++..+... .+...|..+..+|.+.|++++ ...|++..+.+.. +...|..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P-~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFP-GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999999988643 367788899999999999999 9999999886433 667888999999999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHh
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGE--------IERGLELFEKMG 409 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~ 409 (493)
|+++.+.. +-+...+..+..++...|+ +++|.+.+..+.
T Consensus 557 ~~~al~l~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 557 LDEVPPTS-RHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHTSCTTS-TTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHhhcccC-cccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 99998763 3346677778887766554 555555555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.7e-08 Score=83.59 Aligned_cols=176 Identities=10% Similarity=0.044 Sum_probs=119.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHH
Q 011137 225 KALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG----EIKRARNVF 300 (493)
Q Consensus 225 ~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----~~~~A~~~~ 300 (493)
+|++.|++..+.| +...+..+...|...+++++|+++|++..+.| +...+..|...|.. + ++++|++.|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4566666666654 56667777777777777777777777777664 55666667777766 5 777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHHHHHHHHH
Q 011137 301 DGMVNGGVLPSVATYNAMIQVLCK----KDSVENAILVFEEMVGKGYM-PNSTTYNVVIRGLCH----TGEMERALEFVG 371 (493)
Q Consensus 301 ~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~ 371 (493)
++..+.| +...+..|...|.. .+++++|...|++..+.|.. .+...+..|...|.. .+++++|+.+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776653 55666667777766 67777788877777776431 015566667777766 667788888888
Q ss_pred HhhhCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHhcCC
Q 011137 372 RMKDDECEPNVQTYNILIRYFCDA-G-----EIERGLELFEKMGSGV 412 (493)
Q Consensus 372 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 412 (493)
+..+. ..+...+..|...|... | ++++|...|++..+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77765 22444566666666543 2 7778887777777654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=2.5e-08 Score=85.61 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=127.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcc---hHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCR-Q-SLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVI---SYN 211 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~ 211 (493)
+...+..+...+...|++++|+..|+++.+.... + ....+..+..++.+.|++++|+..|+++....|.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 4556677778889999999999999999875311 1 1356778889999999999999999998876555543 455
Q ss_pred HHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 011137 212 VIANGWCL------------------VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC 273 (493)
Q Consensus 212 ~l~~~~~~------------------~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 273 (493)
.+..++.. .|++++|...|+++.+..+. +...+...... ..+...+
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence 55555544 45666666666666654322 11111111000 0000000
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 011137 274 EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS--VATYNAMIQVLCKKDSVENAILVFEEMVGKGY 343 (493)
Q Consensus 274 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 343 (493)
......+...|.+.|++++|+..|+++++...... ...+..+..+|.+.|+.++|...++.+...+.
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01123567789999999999999999988532211 25688899999999999999999999988743
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1e-09 Score=87.54 Aligned_cols=107 Identities=8% Similarity=-0.076 Sum_probs=42.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFF 265 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 265 (493)
.|++++|+..++......+.+...+..+...|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|+..|
T Consensus 10 ~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 10 KADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHH
Confidence 334444444444333322223333334444444444444444444444433222 3334444444444444444444444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 294 (493)
++..+.... +..++..+...|.+.|+.+
T Consensus 89 ~~al~~~p~-~~~~~~~la~~~~~~~~~~ 116 (150)
T 4ga2_A 89 RRSVELNPT-QKDLVLKIAELLCKNDVTD 116 (150)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHHCSSS
T ss_pred HHHHHhCCC-CHHHHHHHHHHHHHcCChH
Confidence 444433221 3333444444444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4e-09 Score=86.70 Aligned_cols=54 Identities=4% Similarity=0.039 Sum_probs=21.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSM 164 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 164 (493)
...+.+.|++++|...+++..+..+ .+...+..+...+...|++++|+..++.+
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a 66 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATI 66 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 3334444444444444444333221 23333444444444444444444444443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=7.6e-09 Score=92.45 Aligned_cols=165 Identities=11% Similarity=0.036 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++.+.|++++|...++++....+............
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 44455556666666666666666666666543 33455666666666666666666666665544333222222222233
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHH
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-DVVTYTTIVHGFGVVGEIKR 295 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~ 295 (493)
+...++.++|.+.+++....... +...+..+...+...|++++|...+.++.+..... +...+..++..+...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 44555555566666665554332 45555566666666666666666666665543221 14455555555655565555
Q ss_pred HHHHHHHH
Q 011137 296 ARNVFDGM 303 (493)
Q Consensus 296 A~~~~~~~ 303 (493)
|...|++.
T Consensus 274 a~~~~r~a 281 (287)
T 3qou_A 274 LASXYRRQ 281 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.4e-10 Score=88.03 Aligned_cols=140 Identities=12% Similarity=0.033 Sum_probs=73.4
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHH
Q 011137 149 VSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALE 228 (493)
Q Consensus 149 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 228 (493)
...|++++|+..++...... +.+...+..+..+|.+.|++++|++.|++.....|.+..+|..+..+|...|++++|+.
T Consensus 8 ~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 8 RSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp CCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHH
Confidence 34455555555555554321 11223344455556666666666666665555445555566666666666666666666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHhccC
Q 011137 229 VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRF-FLEMKKRKCEIDVVTYTTIVHGFGVVG 291 (493)
Q Consensus 229 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~li~~~~~~g 291 (493)
.|++..+.... +..++..+...+.+.|+.+++.+. +++..+..+. +..+|......+...|
T Consensus 87 ~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 66666554332 445555566666666665544433 3555544222 4455555444444444
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.4e-09 Score=87.16 Aligned_cols=61 Identities=7% Similarity=0.060 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP-SVATYNAMIQVLCKKDSVENAILVFEE 337 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~ 337 (493)
...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++
T Consensus 108 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~ 169 (176)
T 2r5s_A 108 FELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR 169 (176)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3444444444444444444444444444432211 123344444444444444444444443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.1e-07 Score=80.76 Aligned_cols=128 Identities=14% Similarity=0.071 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhCCCCCCHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG----KADRAVKIFLSMHEHGCRQSLNSFN 177 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~ 177 (493)
++..+..+...+...+++++|...|++..+.| +...+..+...|.. + ++++|++.|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 44555555555555555555555555555443 34444444444444 3 5555555555554432 334444
Q ss_pred HHHHHHHc----cCCHHHHHHHHHHhhcCCCC--CcchHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 011137 178 TILDLLCK----EKKVEKAYNLFKVFRGKFKA--DVISYNVIANGWCL----VKRTNKALEVLKEMVDR 236 (493)
Q Consensus 178 ~ll~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~ 236 (493)
.|..+|.. .+++++|..+|++.....+. +..++..|...|.. .+++++|+++|++..+.
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 44444444 44555555555544432211 13444444444444 44445555555544443
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-08 Score=100.06 Aligned_cols=163 Identities=6% Similarity=-0.105 Sum_probs=121.2
Q ss_pred cCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Q 011137 116 LRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNL 195 (493)
Q Consensus 116 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~ 195 (493)
.|++++|...+++..+... .+...+..+...+...|++++|++.|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999999877643 467889999999999999999999999998764 45678888999999999999999999
Q ss_pred HHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCC
Q 011137 196 FKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA---GQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 196 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 272 (493)
+++..+..+.+...+..+...+.+.|++++|.+.+++..+.... +...+..+..++... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99887777777889999999999999999999999999876543 677888899999999 99999999999988875
Q ss_pred CCCCHHHHHH
Q 011137 273 CEIDVVTYTT 282 (493)
Q Consensus 273 ~~~~~~~~~~ 282 (493)
.. +...+..
T Consensus 159 p~-~~~~~~~ 167 (568)
T 2vsy_A 159 VG-AVEPFAF 167 (568)
T ss_dssp CC-CSCHHHH
T ss_pred Cc-ccChHHH
Confidence 43 3334433
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.3e-08 Score=90.88 Aligned_cols=167 Identities=11% Similarity=0.026 Sum_probs=112.2
Q ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHH-HHHH
Q 011137 170 RQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTT-YNIV 248 (493)
Q Consensus 170 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~-~~~l 248 (493)
+.+...+..+...+...|++++|...|++.....|.+...+..+...+...|++++|...++++.... |+... ....
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 34445566667777778888888888887776666677777788888888888888888887776543 33332 2222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLP-SVATYNAMIQVLCKKDS 327 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~ 327 (493)
...+...++.++|...+++....... +...+..+...+...|++++|++.|.++.+..... +...+..++..|...|+
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~ 270 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT 270 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence 33355666677777777777766433 66777777777777777777777777777643221 24567777777777777
Q ss_pred HHHHHHHHHHHH
Q 011137 328 VENAILVFEEMV 339 (493)
Q Consensus 328 ~~~a~~~~~~~~ 339 (493)
.++|...+++..
T Consensus 271 ~~~a~~~~r~al 282 (287)
T 3qou_A 271 GDALASXYRRQL 282 (287)
T ss_dssp TCHHHHHHHHHH
T ss_pred CCcHHHHHHHHH
Confidence 777777666543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.6e-08 Score=99.94 Aligned_cols=155 Identities=10% Similarity=0.005 Sum_probs=123.0
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
.+.++|+..|+.+.... +.+...|..+...+.+.|++++|...+++..+... .+..++..+...|...|++++|++.
T Consensus 3 g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45678899998876543 45788999999999999999999999999988753 5688999999999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhCC
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV---KRTNKALEVLKEMVDRG 237 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g 237 (493)
+++..+.. +.+...+..+..+|.+.|++++|.+.|++..+..+.+...+..+...+... |+.++|.+.+++..+.+
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 99998864 456788999999999999999999999998877777888999999999999 99999999999998775
Q ss_pred CC
Q 011137 238 LN 239 (493)
Q Consensus 238 ~~ 239 (493)
..
T Consensus 159 p~ 160 (568)
T 2vsy_A 159 VG 160 (568)
T ss_dssp CC
T ss_pred Cc
Confidence 44
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-06 Score=82.42 Aligned_cols=204 Identities=7% Similarity=-0.034 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEM 338 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 338 (493)
+.+..+|+++... .+.+...|...+..+.+.|+.+.|..+|++.... +.+...|.. |....+.++. ++.+
T Consensus 196 ~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l 265 (493)
T 2uy1_A 196 SRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDL 265 (493)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHH
Confidence 4566788887775 3446778888888888888899999999988876 233322221 2221111111 2222
Q ss_pred HhC---------CCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHH
Q 011137 339 VGK---------GYMP---NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG-EIERGLELF 405 (493)
Q Consensus 339 ~~~---------~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~ 405 (493)
.+. +..+ ....|...+....+.++.+.|..+|+++ ... ..+...|...+..-...+ +.+.|..+|
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 266 KRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp HHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 111 0001 1234555666666677889999999888 321 234455543333222333 688999999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 406 EKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 406 ~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
+...+. .+-+...|...++.....|+.+. |..+|+.+. -....|...+.--...|+.+.+..+++...+
T Consensus 344 e~al~~-~~~~~~~~~~yid~e~~~~~~~~---aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 344 SSGLLK-HPDSTLLKEEFFLFLLRIGDEEN---ARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHH-CTTCHHHHHHHHHHHHHHTCHHH---HHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHH-CCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888775 22235556667776667777777 888888862 2467777777766777998888888875553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=8.9e-07 Score=79.66 Aligned_cols=149 Identities=9% Similarity=0.000 Sum_probs=86.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG-KADRAVKIFLSMHEHGCRQSLNSFNTILDLL 183 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 183 (493)
.++.+-....+.+..++|+++++.+...++ -+..+|+.--..+...| .+++++++++.+.... +.+..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 344443444444555677777777776653 35566666666666666 4777777777777653 44556666665555
Q ss_pred Hcc-C-CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 184 CKE-K-KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN--------KALEVLKEMVDRGLNPNLTTYNIVLKGYF 253 (493)
Q Consensus 184 ~~~-g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 253 (493)
... + +.++++.+++.+....+.|..+|+.-...+.+.|.++ ++++.++++.+..+. |...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 554 5 6666777777766666666666666555555544444 455555555444333 4444444444444
Q ss_pred hcC
Q 011137 254 RAG 256 (493)
Q Consensus 254 ~~g 256 (493)
+.+
T Consensus 213 ~l~ 215 (349)
T 3q7a_A 213 SRP 215 (349)
T ss_dssp TST
T ss_pred hcc
Confidence 433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.92 E-value=3e-08 Score=89.60 Aligned_cols=227 Identities=9% Similarity=0.020 Sum_probs=150.3
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
..|++++|.+++++..+.. +.. .+...++++.|...|... ...|...|++++|...
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHH
Confidence 3578889999998887532 111 011157888888877654 4567788999999999
Q ss_pred HHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHH
Q 011137 230 LKEMVDR----GLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KCE-IDVVTYTTIVHGFGVVGEIKRARNV 299 (493)
Q Consensus 230 ~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~ 299 (493)
|.+..+. |-.. -..+|+.+..+|.+.|++++|+..+++..+. |-. .-..++..+...|.. |++++|++.
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8887643 2111 1357888888999999999999999887653 111 114567778888888 999999999
Q ss_pred HHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCCHHHHHHH
Q 011137 300 FDGMVNGGVLP-----SVATYNAMIQVLCKKDSVENAILVFEEMVGK----GYMPN-STTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 300 ~~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
|++..+..... ...++..+...|.+.|++++|+..|++..+. +..+. ...+..+..++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 98876531110 1356777888888899999999988887753 11111 12455566667777889999988
Q ss_pred HHHhhhCCC--CCC--HHHHHHHHHHHHhcCCHHHHHH
Q 011137 370 VGRMKDDEC--EPN--VQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 370 ~~~~~~~~~--~~~--~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
|++.. ... ... ......++.++ ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 88887 421 111 12344455544 4566655555
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.4e-06 Score=78.44 Aligned_cols=171 Identities=6% Similarity=-0.033 Sum_probs=127.0
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 011137 82 HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLR-DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA-G-KADRAV 158 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~ 158 (493)
....|+++++.+.... |.+..+|+.--.++...| ++++++.+++.+....+ -+..+|+.-...+... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhcCCChHHHH
Confidence 3467888888876544 457778888888888888 58899999999887754 5777888777777766 6 788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHH--------HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC-------h
Q 011137 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVE--------KAYNLFKVFRGKFKADVISYNVIANGWCLVKR-------T 223 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~ 223 (493)
++++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++.+..+.|..+|+.....+.+.++ +
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~ 224 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSL 224 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHH
Confidence 8888888764 557777877666666656555 78888888877777788888888888877776 5
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 257 (493)
+++++.+++++...+. |...|+.+-..+.+.|+
T Consensus 225 ~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 225 QDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 7777777777766544 66677666666655554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.87 E-value=4.7e-06 Score=80.13 Aligned_cols=355 Identities=7% Similarity=-0.018 Sum_probs=219.4
Q ss_pred HHHHHHHHHHh-hChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhC-CC-CCCHHHHHHHH
Q 011137 70 QLVDQIIKRLW-NHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRD-YRTVWTLVHRMKSL-SL-GPTQKTFAIIA 145 (493)
Q Consensus 70 ~~~~~~l~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~ 145 (493)
.++...+..+. ...+.+..+|+..... .|+...|...+....+.++ .+....+|+..... |. ..+...|...+
T Consensus 16 ~vyer~l~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 34445555554 5678899999887764 3599999999998888774 35567778876653 43 34778888888
Q ss_pred HHHH----HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc-------------cCCHHHHHHHHHHhhcCCC-CCc
Q 011137 146 ERYV----SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK-------------EKKVEKAYNLFKVFRGKFK-ADV 207 (493)
Q Consensus 146 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~A~~~~~~~~~~~~-~~~ 207 (493)
..+. ..++.+.+..+|++.+......-...|......-.. .+.+..|..+++.+....+ .+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 346788999999999874221112233322221111 1123334444443332111 133
Q ss_pred chHHHHHHHHHhcC--C-----hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 011137 208 ISYNVIANGWCLVK--R-----TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTY 280 (493)
Q Consensus 208 ~~~~~l~~~~~~~~--~-----~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 280 (493)
..|...+..-...+ - .+.+..+|+++..... .+...|...+..+.+.|+.++|..++++.... +.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 35655554432211 1 3456778998887543 35778888888889999999999999999987 3344333
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011137 281 TTIVHGFGVVGEIKRARNVFDGMVNGG---------VLP---SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (493)
...... ...+ +. ++.+.+.- ..+ ....|...+..+.+.++.+.|..+|+.. ... ..+..
T Consensus 250 ~~y~~~-~e~~---~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~ 320 (493)
T 2uy1_A 250 LYYGLV-MDEE---AV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPH 320 (493)
T ss_dssp HHHHHH-TTCT---HH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHH
T ss_pred HHHHhh-cchh---HH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChH
Confidence 322211 1111 11 22222110 001 1245666677777788899999999999 321 22344
Q ss_pred hHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 011137 349 TYNVVIRGLCH-TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSM 427 (493)
Q Consensus 349 ~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 427 (493)
.|......-.. .++.+.|..+|+...+.- +-+...+...++...+.|+.+.|..+|+.+.+ ....|...+.-=
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE 394 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYE 394 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 44332222222 346999999999998752 33455667778888899999999999999842 577888888766
Q ss_pred hccCCcccHHHHHHHHHHHHH
Q 011137 428 FVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~ 448 (493)
...|+.+. +.++++++.+
T Consensus 395 ~~~G~~~~---~r~v~~~~~~ 412 (493)
T 2uy1_A 395 FMVGSMEL---FRELVDQKMD 412 (493)
T ss_dssp HHHSCHHH---HHHHHHHHHH
T ss_pred HHCCCHHH---HHHHHHHHHH
Confidence 77788887 7777777663
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.9e-08 Score=87.21 Aligned_cols=226 Identities=8% Similarity=-0.033 Sum_probs=143.1
Q ss_pred hcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHH
Q 011137 115 RLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYN 194 (493)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~ 194 (493)
..|++++|.+++++..+... .+ .+...++++.|...|.+. ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~-~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLK-TS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHC-CC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHcc-cc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 35788899999988765321 11 011146677777766654 345666777777777
Q ss_pred HHHHhhcC---CC---CCcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 011137 195 LFKVFRGK---FK---ADVISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNP-NLTTYNIVLKGYFRAGQIEEAWR 263 (493)
Q Consensus 195 ~~~~~~~~---~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~ 263 (493)
.|.+.... .. .-..+|+.+...|...|++++|+..|++..+. |-.. -..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 77654321 10 01236777778888888888888888876532 1111 13567778888877 99999988
Q ss_pred HHHHHHHCCCCC-----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 011137 264 FFLEMKKRKCEI-----DVVTYTTIVHGFGVVGEIKRARNVFDGMVNG----GVLPS-VATYNAMIQVLCKKDSVENAIL 333 (493)
Q Consensus 264 ~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~~~~~~a~~ 333 (493)
.+++........ ...++..+...|...|++++|+..|++..+. +..+. ...+..+..++...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 888876542110 1457778888899999999999999988653 11111 2256666777778899999999
Q ss_pred HHHHHHhCCCCC-Ch---hhHHHHHHHHHhcCCHHHHHH
Q 011137 334 VFEEMVGKGYMP-NS---TTYNVVIRGLCHTGEMERALE 368 (493)
Q Consensus 334 ~~~~~~~~~~~~-~~---~~~~~li~~~~~~~~~~~a~~ 368 (493)
.|++.. ..... +. .....++.++ ..|+.+.+..
T Consensus 217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 999888 42111 11 1233444444 4566655554
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7e-07 Score=79.95 Aligned_cols=159 Identities=14% Similarity=0.099 Sum_probs=72.0
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcc------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVI------SYNVIANGWCLVKRTNKALEVLKEMVDRGLN-PN----LTTYNIV 248 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~l 248 (493)
+..+...|++++|...++......+.+.. .+..+...+...|++++|+..+++..+.... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 34455556666666665555443221111 1223444444455556666655555542111 11 1245555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-HHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKKR-----KCE-IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG----GVLPS-VATYNA 317 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~ 317 (493)
..+|...|++++|...++++.+. +.. ....++..+...|.+.|++++|++.+++..+. +..+. ..+|..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 55555556666655555555421 000 11224444555555555555555555544321 11111 334444
Q ss_pred HHHHHHhcC-CHHHHHHHHHHH
Q 011137 318 MIQVLCKKD-SVENAILVFEEM 338 (493)
Q Consensus 318 li~~~~~~~-~~~~a~~~~~~~ 338 (493)
+..+|.+.| ++++|...+++.
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHH
Confidence 455555555 235555544443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-07 Score=77.86 Aligned_cols=129 Identities=16% Similarity=0.056 Sum_probs=100.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.+..+...+...|++++|...|++.. .++..++..+...|...|++++|++.|++..+.. +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556667778888888888888763 4577888888888888888888888888887754 456777888888888
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADV----------------ISYNVIANGWCLVKRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 238 (493)
..|++++|...|++.....+.+. ..+..+..++...|++++|.+.|++..+...
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 88888888888888776555444 6777888888888888888888888876543
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.82 E-value=3.7e-07 Score=77.31 Aligned_cols=128 Identities=12% Similarity=-0.036 Sum_probs=95.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|+..|++.. .++...+..+..++...|++++|...|++.....+.+...|..+..++...
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~ 84 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQT 84 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence 4455667777888888888887763 456778888888888888888888888877666666777788888888888
Q ss_pred CChhHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011137 221 KRTNKALEVLKEMVDRGLN--------------P-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~--------------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 272 (493)
|++++|++.|++..+.... | ....+..+..++.+.|++++|.+.++...+..
T Consensus 85 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 85 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred ccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888765322 1 12566777777778888888888887777664
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.78 E-value=2.4e-07 Score=74.83 Aligned_cols=127 Identities=12% Similarity=-0.040 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
.+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++.....+.+...|..+...+..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 34444455555555555555555555432 23444555555555555555555555555444444444555555555555
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHH
Q 011137 220 VKRTNKALEVLKEMVDRGLNPNLTTYN--IVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~~g~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
.|++++|.+.+++..+.... +...+. ..+..+.+.|++++|++.+...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555543222 222222 2222244445555555555443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.76 E-value=9.3e-07 Score=79.15 Aligned_cols=162 Identities=9% Similarity=-0.012 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC--C----cchHH
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQS-----LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--D----VISYN 211 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~ 211 (493)
..+..+...|++++|.+.+.+..+...... ...+..+...+...|++++|...+++....... + ..+|+
T Consensus 80 ~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 2qfc_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 344445555555555555555444321100 011233444455555666666665554322111 1 22555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CC-CCHHHH
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVD---R-GLNP--NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK----CE-IDVVTY 280 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~---~-g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~ 280 (493)
.+...|...|++++|+..+++..+ . +..+ ...++..+..+|.+.|++++|...+++..+.. .. .-..+|
T Consensus 160 ~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~ 239 (293)
T 2qfc_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 666666666666666666665541 1 1111 11355666666666666666666666554321 00 014556
Q ss_pred HHHHHHHhccCCHHHH-HHHHHHHH
Q 011137 281 TTIVHGFGVVGEIKRA-RNVFDGMV 304 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A-~~~~~~~~ 304 (493)
..+..+|.+.|++++| ...+++..
T Consensus 240 ~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6666666666666666 55555543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=71.31 Aligned_cols=94 Identities=11% Similarity=0.048 Sum_probs=41.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+......|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.....+.+...|..+..++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3334444444444444444444444332 233444444444444444444444444444333333444444444444444
Q ss_pred CChhHHHHHHHHHHh
Q 011137 221 KRTNKALEVLKEMVD 235 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~ 235 (493)
|++++|++.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-06 Score=77.49 Aligned_cols=91 Identities=13% Similarity=0.160 Sum_probs=43.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHH
Q 011137 214 ANGWCLVKRTNKALEVLKEMVDRGL-NPNL----TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCE-ID----VVTYTTI 283 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l 283 (493)
+..+...|++++|.+++++..+... .|+. ..+..+...+...|++++|+..++++...... .+ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 4455566666666666666654321 1111 11223444444455555565555555543111 11 1234555
Q ss_pred HHHHhccCCHHHHHHHHHHHH
Q 011137 284 VHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 284 i~~~~~~g~~~~A~~~~~~~~ 304 (493)
...|...|++++|+..|+++.
T Consensus 162 g~~y~~~g~~~~A~~~~~~al 182 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 555555555555555555544
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-07 Score=71.23 Aligned_cols=95 Identities=11% Similarity=-0.004 Sum_probs=44.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
+......|.+.|++++|++.|++..+..|.+..+|..+..++.+.|++++|++.+++.++.+.. +...|..+..++...
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHC
Confidence 3344444455555555555554444434444444444555555555555555555544443222 334444444444444
Q ss_pred CCHHHHHHHHHHHHHC
Q 011137 256 GQIEEAWRFFLEMKKR 271 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~ 271 (493)
|++++|++.|++..+.
T Consensus 95 ~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 95 REWSKAQRAYEDALQV 110 (126)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 4444444444444443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=7.6e-08 Score=85.61 Aligned_cols=195 Identities=12% Similarity=0.005 Sum_probs=116.9
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (493)
+...+..+...+...|++++|+..|++..+.... +...|..+..++.+.|++++|.+.+++..+.... +...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 4456667777777778888888888777765433 5677777778888888888888888877776433 6677777788
Q ss_pred HHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER 365 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 365 (493)
+|...|++++|+..|++..+.+.. +...+...+....+. .++.. +..........+......+.. + ..|+.++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTR-L-IAAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence 888888888888888777653110 000111111111111 11111 112222223334444333332 2 2688888
Q ss_pred HHHHHHHhhhCCCCCC-HHHHHHHHHHHHhc-CCHHHHHHHHHHHhcC
Q 011137 366 ALEFVGRMKDDECEPN-VQTYNILIRYFCDA-GEIERGLELFEKMGSG 411 (493)
Q Consensus 366 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 411 (493)
|++.++...+. .|+ ......+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 98888888765 344 33444444445444 6688899999887653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.74 E-value=3.1e-07 Score=74.19 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=46.6
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
+..+...+...|++++|...|++.....+.+..++..+...+...|++++|.+.+++..+.... +...+..+..++...
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~ 94 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMAL 94 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHh
Confidence 3444444555555555555555544443444445555555555555555555555555443221 334444444555555
Q ss_pred CCHHHHHHHHHHHHHC
Q 011137 256 GQIEEAWRFFLEMKKR 271 (493)
Q Consensus 256 g~~~~a~~~~~~~~~~ 271 (493)
|++++|.+.++++.+.
T Consensus 95 ~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 95 GKFRAALRDYETVVKV 110 (166)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh
Confidence 5555555555554443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.9e-08 Score=86.87 Aligned_cols=98 Identities=9% Similarity=-0.038 Sum_probs=67.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...+++.....+.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44556666667777777777777777776643 34566677777777777777777777777666656666677777777
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 011137 217 WCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~ 235 (493)
+...|++++|+..|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.72 E-value=4.8e-07 Score=68.87 Aligned_cols=94 Identities=11% Similarity=0.192 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
.+..+...+...|++++|++.++++.+.. +.+...+..+..++...|++++|...++++....+.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 33334444444444444444444443321 22333344444444444444444444444333333333344444444444
Q ss_pred cCChhHHHHHHHHHH
Q 011137 220 VKRTNKALEVLKEMV 234 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~ 234 (493)
.|++++|...++++.
T Consensus 90 ~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 90 QGDYDEAIEYYQKAL 104 (125)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHH
Confidence 444444444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=79.44 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=43.1
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC
Q 011137 208 ISYNVIANGWCLVKRTNKALEVLKEMVD----RGLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KCE--ID 276 (493)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~ 276 (493)
.++..+...+...|++++|...+++..+ .+..+ ...++..+...+...|++++|.+.+++..+. +.. ..
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444445555555555555544432 11111 1234444555555555555555555544332 101 11
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
...+..+...+...|++++|...+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 2334444455555555555555555443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.5e-07 Score=76.79 Aligned_cols=188 Identities=9% Similarity=-0.116 Sum_probs=88.3
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhh------------CCCC-----
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHA-------IDLAARLRDYRTVWTLVHRMKS------------LSLG----- 135 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~------------~~~~----- 135 (493)
..+...|.+.|..+.... |-....|.-+ ..++.+.++..++...+..-.. .|.-
T Consensus 19 ~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 19 PMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred CCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 345566666666664432 3355566655 3455555444444444444332 1100
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC--cchH
Q 011137 136 ---PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD--VISY 210 (493)
Q Consensus 136 ---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~ 210 (493)
.-..........+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.......+. ...+
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~ 174 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG 174 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence 001223334445555566666666665554432 222233334445555566666655555332211110 1244
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPN--LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
..+..++...|++++|++.|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5555555555555555555555543222132 223444455555555555555555555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=1.8e-06 Score=77.28 Aligned_cols=165 Identities=15% Similarity=0.086 Sum_probs=103.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc------chHHHHHHHHHhcCChhHHHHHHHHHHhCCC---CCC--HH
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV------ISYNVIANGWCLVKRTNKALEVLKEMVDRGL---NPN--LT 243 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~ 243 (493)
.+...+..+...|++++|.+.++......+... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 444455667777888888777766554332222 2234455666777788888888777764321 111 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCC-CC--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC----CCCCC-H
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKK---RKC-EI--DVVTYTTIVHGFGVVGEIKRARNVFDGMVNG----GVLPS-V 312 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~-~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~ 312 (493)
+++.+...|...|++++|...+++..+ ... .+ ...++..+...|...|++++|+..+++..+. +.... .
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 677777788888888888888877662 211 11 1246777777788888888888887776542 11111 4
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 011137 313 ATYNAMIQVLCKKDSVENA-ILVFEEMV 339 (493)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a-~~~~~~~~ 339 (493)
.+|..+..+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5677777777888888777 66566554
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-07 Score=73.73 Aligned_cols=98 Identities=10% Similarity=-0.038 Sum_probs=58.3
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVH 285 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 285 (493)
+...+..+...+.+.|++++|+..|++.....+. +...|..+..++...|++++|+..|++..+.... +...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHH
Confidence 4445556666666666666666666666654333 4555666666666666666666666666655332 4555556666
Q ss_pred HHhccCCHHHHHHHHHHHHH
Q 011137 286 GFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~ 305 (493)
+|...|++++|+..|++..+
T Consensus 113 ~~~~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666655
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-07 Score=69.78 Aligned_cols=119 Identities=9% Similarity=-0.060 Sum_probs=73.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.+...|..+...+.+.|++++|...+++...... .+..++..+...+...|++++|++.+++..+.. +.+...+..+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l 90 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRK 90 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHH
Confidence 34556666677777777777777777777666532 356666666666777777777777776666543 3345566666
Q ss_pred HHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
..++...|++++|...|++.....+.+...+..+...+...
T Consensus 91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence 66666666666666666665544444445555555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.68 E-value=2.2e-07 Score=80.79 Aligned_cols=188 Identities=8% Similarity=-0.075 Sum_probs=106.2
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHccCCHHHHHHHHHHhhcCCC------CC----------
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTI-------LDLLCKEKKVEKAYNLFKVFRGKFK------AD---------- 206 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------l~~~~~~g~~~~A~~~~~~~~~~~~------~~---------- 206 (493)
..++.+.|.+.|.++.+.. +.....|+.+ ...+.+.++..+++..+..-.+..+ -+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4677777888887777654 3445666655 3334444444444443333222100 00
Q ss_pred -----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 011137 207 -----VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEID--VVT 279 (493)
Q Consensus 207 -----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~ 279 (493)
...+..+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .+. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 1123345566667777777777777766543 333244455556777777777777776443321 111 235
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNGGVLPS--VATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56666677777777777777777664322132 234455556666777777777777777665
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-07 Score=73.90 Aligned_cols=100 Identities=13% Similarity=0.075 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+.+.|++++|+..|+.+.... +.+...|..+..+|...|++++|+..|++.....|.+...|..+..+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 34566667777777888888888888777654 45677777777788888888888888877776666677777788888
Q ss_pred HHhcCChhHHHHHHHHHHhCC
Q 011137 217 WCLVKRTNKALEVLKEMVDRG 237 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g 237 (493)
|...|++++|.+.|++..+..
T Consensus 114 ~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 114 QLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 888888888888888777653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=78.89 Aligned_cols=131 Identities=8% Similarity=-0.036 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhc------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC--C
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRG------KFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR----GLNP--N 241 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p--~ 241 (493)
.++..+...+...|++++|...+++... ..+....++..+...+...|++++|.+.+++..+. +-.+ .
T Consensus 27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 106 (203)
T 3gw4_A 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA 106 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 3444444444444444444444443322 11112234555555555566666665555554332 1111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 242 LTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KCE-IDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 242 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
...+..+...+...|++++|...+++.... +.. ....++..+...+...|++++|.+.+++..
T Consensus 107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 234556666666667777776666665432 110 012234555666666666666666666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5.7e-07 Score=68.42 Aligned_cols=95 Identities=12% Similarity=0.260 Sum_probs=45.3
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (493)
.|..+...+...|++++|.+.++++.+.... +..++..+...+...|++++|...++++.+... .+..++..+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 88 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHH
Confidence 3444444444455555555555444433211 334444445555555555555555555444322 23444445555555
Q ss_pred ccCCHHHHHHHHHHHHH
Q 011137 289 VVGEIKRARNVFDGMVN 305 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~ 305 (493)
..|++++|...|+++.+
T Consensus 89 ~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 55555555555555544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.68 E-value=3.6e-07 Score=70.59 Aligned_cols=116 Identities=10% Similarity=0.015 Sum_probs=65.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++.....+.+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 34556666666666666666666666666543 33455566666666666666666666665555444455556666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011137 217 WCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254 (493)
Q Consensus 217 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 254 (493)
+...|++++|.+.|++..+.... +...+..+..++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHH
Confidence 66666666666666665543221 23344444444443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.5e-07 Score=69.70 Aligned_cols=94 Identities=11% Similarity=0.002 Sum_probs=38.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
+..+...+...|++++|+..+++..... +.+...+..+..++...|++++|...++......+.+...+..+...+...
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSL 93 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHh
Confidence 3333344444444444444444443321 223333444444444444444444444443333333333444444444444
Q ss_pred CChhHHHHHHHHHHh
Q 011137 221 KRTNKALEVLKEMVD 235 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~ 235 (493)
|++++|.+.+++..+
T Consensus 94 ~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 94 NKHVEAVAYYKKALE 108 (131)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 444444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.5e-07 Score=77.25 Aligned_cols=118 Identities=7% Similarity=0.098 Sum_probs=50.3
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCH--HHHH
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG-YFRAGQI--EEAW 262 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~--~~a~ 262 (493)
.|++++|...++......+.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344444444444433333334444444444444444444444444444433221 33344444444 3344444 4444
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
..++++.+.... +...+..+...|...|++++|...|+++.+
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 444444443221 334444444444444555555555544444
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=9.4e-07 Score=67.83 Aligned_cols=120 Identities=9% Similarity=-0.008 Sum_probs=102.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...+..+...+...|+++.|...+++...... .+...+..+...+...|++++|++.++...+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 456788888999999999999999999887643 578889999999999999999999999998764 456788889999
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (493)
++...|++++|...|++.....+.+...+..+..++...|++
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999988776666778888888888877764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-07 Score=72.85 Aligned_cols=98 Identities=9% Similarity=-0.129 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+...|++++|+..|+...... +.+...|..+..++...|++++|+..|++.....|.+...+..+..+|
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445555666666666666666666666543 345556666666666666666666666666555555566666666666
Q ss_pred HhcCChhHHHHHHHHHHhC
Q 011137 218 CLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~ 236 (493)
...|++++|.+.|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-05 Score=69.43 Aligned_cols=92 Identities=10% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC--CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC-hhHHHHHHH
Q 011137 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK--KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR-TNKALEVLK 231 (493)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~ 231 (493)
++++.+++.+.... +.+..+|+.-.-++...| ++++++.+++.+.+..+.|..+|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 34444444444332 233344444443343333 24444444444444444444444444444444444 244444444
Q ss_pred HHHhCCCCCCHHHHHHH
Q 011137 232 EMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 232 ~m~~~g~~p~~~~~~~l 248 (493)
++++..+. |...|+..
T Consensus 170 ~~I~~~p~-N~SAW~~R 185 (331)
T 3dss_A 170 SLITRNFS-NYSSWHYR 185 (331)
T ss_dssp HHHHHCSC-CHHHHHHH
T ss_pred HHHHHCCC-CHHHHHHH
Confidence 44443332 33344333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-07 Score=74.01 Aligned_cols=94 Identities=10% Similarity=-0.108 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (493)
.+..+...+...|++++|+..|++....... +...|..+..++...|++++|+..|++....... +...+..+..+|.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence 3334444444444444444444444433222 3334444444444444444444444444433221 3333344444444
Q ss_pred ccCCHHHHHHHHHHHH
Q 011137 289 VVGEIKRARNVFDGMV 304 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~ 304 (493)
..|++++|++.|++..
T Consensus 101 ~~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQ 116 (148)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 4444444444444433
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.4e-07 Score=75.07 Aligned_cols=119 Identities=6% Similarity=0.088 Sum_probs=59.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH-HHhcCCh--hHHH
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG-WCLVKRT--NKAL 227 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~A~ 227 (493)
.|++++|+..++...+.. +.+...|..+..+|...|++++|...|++.....+.+...+..+... +...|++ ++|.
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 344555555555544432 23444555555555555555555555555444333444455555555 4455555 5555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
..++++.+.... +...+..+..++...|++++|...++++.+.
T Consensus 102 ~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 555555544322 3445555555555556666666655555554
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.3e-05 Score=69.17 Aligned_cols=183 Identities=8% Similarity=0.014 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR--TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ-IEEAWRFF 265 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 265 (493)
+++++.+++.+....|.+..+|+.-...+...++ +++++++++++.+.... |..+|+.-.-++...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4566677766666666677777776666666663 67777777777766544 66666666666666666 46777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc------
Q 011137 266 LEMKKRKCEIDVVTYTTIVHGFGVV--------------GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKK------ 325 (493)
Q Consensus 266 ~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~------ 325 (493)
+.+.+..+. |...|+.....+.+. +.++++++.+++.+...+ -|..+|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCcccc
Confidence 777766544 666666655554443 346677777777766533 3566666554444443
Q ss_pred -----CCHHHHHHHHHHHHhCCCCCCh-hhHHHHHH---HHHhcCCHHHHHHHHHHhhhC
Q 011137 326 -----DSVENAILVFEEMVGKGYMPNS-TTYNVVIR---GLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 326 -----~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~---~~~~~~~~~~a~~~~~~~~~~ 376 (493)
+.++++++.++++.+.. ||. ..+..++. +....|..+++..++.++++.
T Consensus 247 ~~~~~~~l~~el~~~~elle~~--pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELE--PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhC--cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 34677777777777653 332 22222211 112356677788888888765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.58 E-value=1.2e-06 Score=80.00 Aligned_cols=124 Identities=11% Similarity=-0.051 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQS--------------LNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
+...+..+...|.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..|++....
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777778888888888888887776531111 244555555555555555555555555444
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEA 261 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 261 (493)
.+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+.+++
T Consensus 226 ~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 226 DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555555555555555443222 334444455555555555444
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-06 Score=79.71 Aligned_cols=132 Identities=8% Similarity=-0.027 Sum_probs=115.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC--------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT--------------QKTFAIIAERYVSAGKADRAVKIFLSMHEH 167 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 167 (493)
+...|..+...+.+.|++++|...|++......... ..+|..+..+|.+.|++++|+..+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788889999999999999999999988754332 589999999999999999999999999987
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH-HHHHHHHH
Q 011137 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA-LEVLKEMV 234 (493)
Q Consensus 168 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~m~ 234 (493)
. +.+...|..+..+|...|++++|...|++.....+.+..++..+..++.+.|+.++| .+.++.|.
T Consensus 226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 567889999999999999999999999998887777888999999999999999988 45666664
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-07 Score=78.80 Aligned_cols=123 Identities=11% Similarity=0.017 Sum_probs=66.9
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 011137 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPN---------------LTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK 272 (493)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 272 (493)
..+..+...+...|++++|+..|++..+....-. ...+..+..++.+.|++++|+..++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455555566666666666666666654322100 2455556666666666666666666666553
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 273 CEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAI 332 (493)
Q Consensus 273 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 332 (493)
. .+...+..+..+|...|++++|++.|++..+... .+...+..+..++...++.+++.
T Consensus 119 p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC--
T ss_pred c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2455566666666666666666666666655321 23445555555555544444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.5e-06 Score=63.21 Aligned_cols=92 Identities=14% Similarity=0.050 Sum_probs=36.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC
Q 011137 142 AIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221 (493)
Q Consensus 142 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (493)
..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++.....+.+...+..+..++...|
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 333334444444444444444443321 1233333334444444444444444444333332333333444444444444
Q ss_pred ChhHHHHHHHHHH
Q 011137 222 RTNKALEVLKEMV 234 (493)
Q Consensus 222 ~~~~A~~~~~~m~ 234 (493)
++++|.+.+++..
T Consensus 87 ~~~~A~~~~~~~~ 99 (118)
T 1elw_A 87 RFEEAKRTYEEGL 99 (118)
T ss_dssp CHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.5e-06 Score=66.46 Aligned_cols=95 Identities=19% Similarity=0.107 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
.+......+...|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++.....+.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34444455555555555555555555432 23445555555555555555555555555544444444555555555555
Q ss_pred cCChhHHHHHHHHHHh
Q 011137 220 VKRTNKALEVLKEMVD 235 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~ 235 (493)
.|++++|.+.|++..+
T Consensus 85 ~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 85 VKEYASALETLDAART 100 (126)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHH
Confidence 5555555555555543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-07 Score=79.04 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----------------HHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSL----------------NSFNTILDLLCKEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----------------~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 201 (493)
...+..+...+...|++++|+..|++..+... .+. .++..+..++...|++++|+..++....
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~ 116 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 116 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455566667777777777777777665321 111 3444444444555555555555544444
Q ss_pred CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 202 KFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 202 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
..+.+..++..+..++...|++++|.+.|++..+
T Consensus 117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 117 IDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 3333444444444444445555555554444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-06 Score=66.43 Aligned_cols=94 Identities=9% Similarity=0.017 Sum_probs=45.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA 255 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 255 (493)
+..+...+.+.|++++|...|++.....+.+...|..+..++.+.|++++|+..+++..+.... +...|..+..++...
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHH
Confidence 3444444455555555555555444443444444555555555555555555555554443222 334444444445555
Q ss_pred CCHHHHHHHHHHHHH
Q 011137 256 GQIEEAWRFFLEMKK 270 (493)
Q Consensus 256 g~~~~a~~~~~~~~~ 270 (493)
|++++|...+++..+
T Consensus 86 ~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 86 KEYASALETLDAART 100 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHH
Confidence 555555555444444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.48 E-value=6.4e-06 Score=61.70 Aligned_cols=113 Identities=8% Similarity=-0.041 Sum_probs=94.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
.+..+..+...+...|++++|...++....... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP-HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 356788888999999999999999999987653 478889999999999999999999999998764 456788899999
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
++...|++++|...++......+.+...+..+...
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 99999999999999999887666666666555443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.44 E-value=1.3e-05 Score=75.98 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=27.9
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcc-----------------hHHHHHHHHHhcCChhHHHHHHHHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVI-----------------SYNVIANGWCLVKRTNKALEVLKEMV 234 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~~~~A~~~~~~m~ 234 (493)
..+.+.|++++|++.|..+.+..+.... ++..++..|...|++++|.+.+..+.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~ 82 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHST 82 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455667777777776665543222211 23445555555555555555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.8e-06 Score=67.70 Aligned_cols=95 Identities=8% Similarity=-0.080 Sum_probs=52.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.+..+...+.+.|++++|...|+......+ .+...|..+..+|...|++++|+..|+...... +.+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 344444555555666666666665555432 345555555555666666666666666555543 334445555555555
Q ss_pred ccCCHHHHHHHHHHhhc
Q 011137 185 KEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~ 201 (493)
..|++++|...|+....
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 56666666655555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-06 Score=66.17 Aligned_cols=96 Identities=14% Similarity=-0.078 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
..+..+...+...|++++|+..|+.+.... +.+...|..+..++...|++++|...|++.....|.+...+..+..++.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 344445555666666666666666665543 3455556666666666666666666666655554555556666666666
Q ss_pred hcCChhHHHHHHHHHHh
Q 011137 219 LVKRTNKALEVLKEMVD 235 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~ 235 (493)
..|++++|.+.|++..+
T Consensus 98 ~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARA 114 (142)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666666554
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.41 E-value=2.1e-06 Score=63.79 Aligned_cols=95 Identities=12% Similarity=0.014 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHH
Q 011137 104 SSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQ--SLNSFNTILD 181 (493)
Q Consensus 104 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~ 181 (493)
..|..+...+.+.|++++|...+++..+... .+...+..+...+...|++++|++.+++..+.. +. +...+..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 3344444444444444444444444433321 233344444444444444444444444444322 11 2333444444
Q ss_pred HHHcc-CCHHHHHHHHHHhh
Q 011137 182 LLCKE-KKVEKAYNLFKVFR 200 (493)
Q Consensus 182 ~~~~~-g~~~~A~~~~~~~~ 200 (493)
++... |++++|.+.++...
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~ 104 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAK 104 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHG
T ss_pred HHHHHhCCHHHHHHHHHHHh
Confidence 44444 44444444444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.40 E-value=5.1e-06 Score=63.65 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=25.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
..+...+.+.|++++|++.|++.++..+. +...|..+..+|.+.|++++|++.+++..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 33444444444444444444444433222 33344444444444444444444444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.40 E-value=4.8e-06 Score=61.76 Aligned_cols=101 Identities=8% Similarity=0.030 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCC--CcchHHHHH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKA--DVISYNVIA 214 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 214 (493)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...|++.....+. +...+..+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45567778888999999999999999998764 456788899999999999999999999998877777 788999999
Q ss_pred HHHHhc-CChhHHHHHHHHHHhCCC
Q 011137 215 NGWCLV-KRTNKALEVLKEMVDRGL 238 (493)
Q Consensus 215 ~~~~~~-~~~~~A~~~~~~m~~~g~ 238 (493)
..+... |++++|.+.+++......
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHhCCHHHHHHHHHHHhhccc
Confidence 999999 999999999999987654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.39 E-value=5e-06 Score=67.01 Aligned_cols=96 Identities=6% Similarity=-0.035 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
..+..+...+...|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++.....+.+...|..+..+|.
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344444444445555555555555444432 2234444445555555555555555554444433444444555555555
Q ss_pred hcCChhHHHHHHHHHHh
Q 011137 219 LVKRTNKALEVLKEMVD 235 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~ 235 (493)
..|++++|.+.|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 55555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-05 Score=63.06 Aligned_cols=28 Identities=7% Similarity=0.096 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
..+..+...+...|++++|++.|++..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~ 56 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG 56 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344444444444444444444444443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=6.6e-06 Score=63.83 Aligned_cols=95 Identities=9% Similarity=-0.043 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+...|++++|+..|+...... +.+...+..+..++...|++++|...++......+.+...|..+..++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 87 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 87 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3344444444444444444444444444332 223334444444444444444444444443333333334444444444
Q ss_pred HhcCChhHHHHHHHHH
Q 011137 218 CLVKRTNKALEVLKEM 233 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m 233 (493)
...|++++|...|++.
T Consensus 88 ~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 88 LEMESYDEAIANLQRA 103 (137)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4444444444444443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.38 E-value=4.6e-06 Score=63.89 Aligned_cols=95 Identities=14% Similarity=0.120 Sum_probs=45.8
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCC----HHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGL--NPN----LTTYNIVL 249 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~----~~~~~~l~ 249 (493)
+..+...+.+.|++++|+..|++.....|.+..+|+.+..+|.+.|++++|++.+++.++... .++ ..+|..+.
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 334444455555555555555544443444444555555555555555555555555443211 001 12344455
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 011137 250 KGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 250 ~~~~~~g~~~~a~~~~~~~~~ 270 (493)
.++...|++++|++.|++...
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHh
Confidence 555555555555555555544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.36 E-value=8.9e-06 Score=65.51 Aligned_cols=107 Identities=8% Similarity=-0.011 Sum_probs=93.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
+...|..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|+..|++..+.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 567788899999999999999999999988753 578899999999999999999999999999875 456888999999
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchH
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISY 210 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 210 (493)
+|...|++++|...|++.....+.+...|
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 116 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDA 116 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHH
Confidence 99999999999999998876655555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.36 E-value=6.2e-06 Score=63.98 Aligned_cols=101 Identities=11% Similarity=-0.023 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTI 179 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 179 (493)
+.++..|..+...+...|++++|...|+....... .+...+..+..++...|++++|+..++...+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45788999999999999999999999999988754 578899999999999999999999999998865 4578889999
Q ss_pred HHHHHccCCHHHHHHHHHHhhcC
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
..++...|++++|...|++....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999887543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.5e-05 Score=62.52 Aligned_cols=114 Identities=12% Similarity=-0.011 Sum_probs=89.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 011137 100 AHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPT----QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNS 175 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 175 (493)
+.+...+..+...+...|++++|...|++..+.. |+ ...+..+...|...|++++|+..+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3467788888999999999999999999998765 45 6778888888999999999999998888753 446777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANG 216 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 216 (493)
+..+..++...|++++|...|++.....+.+...+..+...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 88888888888899888888888766555555555444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=3.7e-05 Score=72.90 Aligned_cols=196 Identities=9% Similarity=-0.002 Sum_probs=135.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPT----------------QKTFAIIAERYVSAGKADRAVKIFLSMHEHGC-RQS 172 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 172 (493)
.+.+.+.|++++|.+.|..+.+...... ..++..+...|...|++++|.+.+..+...-- .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456778899999999988876543211 23577788899999999999999988764211 111
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHhhcC------CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC--CC--
Q 011137 173 L----NSFNTILDLLCKEKKVEKAYNLFKVFRGK------FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR--GL-- 238 (493)
Q Consensus 173 ~----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~-- 238 (493)
. .+.+.+...+...|+.+.|..+++..... ...-..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 22333444455678899998888765321 1112346788899999999999999999887542 11
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 239 NP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR----KCEID--VVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 239 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
.+ ....+..++..|...|++++|..++++.... +.++. ...+..+...+...|++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 2357888889999999999999999887653 11111 34566777788888999999888877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.32 E-value=4.4e-06 Score=64.02 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC-------cchHHHH
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD-------VISYNVI 213 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~l 213 (493)
+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++......+.+ ..++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444332 2233344444444444444444444444333221111 3334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 011137 214 ANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 214 ~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
...+...|++++|.+.|++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444445555555555544444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.7e-06 Score=63.23 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=8.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHH
Q 011137 210 YNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
+..+..++...|++++|+..+++
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~ 110 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRA 110 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333333333333333333
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.29 E-value=4.6e-06 Score=63.24 Aligned_cols=93 Identities=4% Similarity=-0.106 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV 290 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 290 (493)
..+...+.+.|++++|+..|++..+.... +...|..+..++...|++++|+..+++..+.... +...+..+..+|...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence 33444444455555555555554443222 3444444444555555555555555554444222 344444455555555
Q ss_pred CCHHHHHHHHHHHHH
Q 011137 291 GEIKRARNVFDGMVN 305 (493)
Q Consensus 291 g~~~~A~~~~~~~~~ 305 (493)
|++++|+..|++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 99 HNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555554443
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.28 E-value=4.2e-06 Score=64.11 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=46.1
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CC----HHHHHHH
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN--PN----LTTYNIV 248 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p~----~~~~~~l 248 (493)
.+..+...+...|++++|...|++.....+.+...+..+...+...|++++|...+++..+.... ++ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 34444555555555555555555544443444445555555555555555555555554432110 11 3344444
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
..++...|++++|.+.++.+.+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 4444444555555555444444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.23 E-value=3e-05 Score=59.27 Aligned_cols=20 Identities=15% Similarity=0.132 Sum_probs=7.4
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 011137 249 LKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 249 ~~~~~~~g~~~~a~~~~~~~ 268 (493)
..++...|++++|...++.+
T Consensus 83 a~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 33333333333333333333
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.22 E-value=3.9e-05 Score=58.61 Aligned_cols=91 Identities=15% Similarity=0.161 Sum_probs=45.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC---cchHHHHHHHHH
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSL---NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD---VISYNVIANGWC 218 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~ 218 (493)
...+...|++++|+..|+.+.+.. +.+. ..+..+..++...|++++|...|+.+....+.+ ..++..+..++.
T Consensus 9 a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 9 AFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344445555555555555554432 1111 244445555555555555555555544433333 334555555555
Q ss_pred hcCChhHHHHHHHHHHhC
Q 011137 219 LVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~ 236 (493)
..|++++|...|+++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555543
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.20 E-value=7.2e-06 Score=65.48 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=11.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+..+...+...|++++|.+.+++.
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344444444445555554444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.18 E-value=9.6e-06 Score=64.74 Aligned_cols=131 Identities=12% Similarity=0.032 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcCCC--C----Ccc
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCR-QS----LNSFNTILDLLCKEKKVEKAYNLFKVFRGKFK--A----DVI 208 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--~----~~~ 208 (493)
++..+...+...|++++|+..+++..+.... .+ ..++..+...+...|++++|...+++.....+ . ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3444555555555566555555554432100 11 12455556666666666666666655432110 0 133
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDR----GLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
.+..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 5666777777777888777777776532 1111 123455666667777777777777766544
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.17 E-value=3.2e-05 Score=73.77 Aligned_cols=88 Identities=13% Similarity=-0.017 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 253 (493)
..|..+..+|.+.|++++|+..+++.....+.+..+|..+..+|...|++++|+..|++..+.... +...+..+..++.
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 455555555555666666666555555444445555555666666666666666666665554322 3344555555555
Q ss_pred hcCCHHHHH
Q 011137 254 RAGQIEEAW 262 (493)
Q Consensus 254 ~~g~~~~a~ 262 (493)
+.++.+++.
T Consensus 397 ~~~~~~~a~ 405 (457)
T 1kt0_A 397 KAKEHNERD 405 (457)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.1e-05 Score=72.57 Aligned_cols=138 Identities=9% Similarity=-0.011 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
..+..+...+.+.|++++|++.|++..+.- +... .....+ ......+.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~~----------~~~~~~-------~~~~~~~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGSR----------AAAEDA-------DGAKLQPVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHH----------HHSCHH-------HHGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcCc----------cccChH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888888888888888776520 0000 000000 000111113344555555555
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 011137 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRAR 297 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 297 (493)
+.|++++|++.+++..+.... +...|..+..+|...|++++|++.+++..+.... +...+..+...+...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~-~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555544322 3445555555555555555555555555544222 4444455555555555444443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.15 E-value=2.2e-05 Score=74.97 Aligned_cols=96 Identities=11% Similarity=0.050 Sum_probs=74.6
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286 (493)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 286 (493)
..+|..+..+|.+.|++++|+..+++.++.... +...|..+..+|...|++++|+..|+++.+.... +...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 467888889999999999999999998876544 6788888999999999999999999998887433 66778888888
Q ss_pred HhccCCHHHHHH-HHHHHH
Q 011137 287 FGVVGEIKRARN-VFDGMV 304 (493)
Q Consensus 287 ~~~~g~~~~A~~-~~~~~~ 304 (493)
+.+.++.+++.+ .+..|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 888888877664 445443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.7e-06 Score=79.93 Aligned_cols=118 Identities=12% Similarity=-0.047 Sum_probs=71.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHH
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKA 226 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 226 (493)
.+.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..+++..+..+.+..+|..+..+|...|++++|
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 3445667777777777666543 344666666777777777777777777766665555666677777777777777777
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 011137 227 LEVLKEMVDRGLNPNLTTYNIVLKG--YFRAGQIEEAWRFFL 266 (493)
Q Consensus 227 ~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 266 (493)
++.|++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 7777776654322 22344444444 666677777777766
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.13 E-value=5.1e-06 Score=79.70 Aligned_cols=121 Identities=14% Similarity=0.037 Sum_probs=88.9
Q ss_pred HHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 011137 179 ILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQI 258 (493)
Q Consensus 179 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 258 (493)
+...+.+.|++++|.+.|++..+..+.+..+|..+..+|.+.|++++|++.+++..+.... +..++..+..+|.+.|++
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCH
Confidence 3445667888888888888877766667788888888888888888888888888876543 667788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCCHHHHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHG--FGVVGEIKRARNVFD 301 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 301 (493)
++|.+.+++..+.... +...+..+..+ +.+.|++++|++.++
T Consensus 91 ~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 8888888888776432 34455555555 777788888888887
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.11 E-value=3.6e-06 Score=63.41 Aligned_cols=84 Identities=13% Similarity=0.080 Sum_probs=37.5
Q ss_pred CCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHH
Q 011137 152 GKADRAVKIFLSMHEHG--CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 152 g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
|++++|+..|++..+.+ -+.+...+..+..+|...|++++|...|++.....|.+..++..+..++...|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 44444444444444432 1222334444444455555555555555444444444444444455555555555555555
Q ss_pred HHHHHh
Q 011137 230 LKEMVD 235 (493)
Q Consensus 230 ~~~m~~ 235 (493)
+++...
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00011 Score=71.93 Aligned_cols=172 Identities=6% Similarity=0.005 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC--C
Q 011137 155 DRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK----------VEKAYNLFKVFRGKFKADVISYNVIANGWCLVK--R 222 (493)
Q Consensus 155 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~ 222 (493)
++|++.++.+.... +.+..+|+.--.++...|+ +++++..++.+....+.+..+|+.-...+.+.+ +
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccccc
Confidence 45566666666543 3344555555444444444 666666666666655666666666666666666 5
Q ss_pred hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------
Q 011137 223 TNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAG-QIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV----------- 290 (493)
Q Consensus 223 ~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~----------- 290 (493)
++++++.++++.+.... +..+|+.-..++.+.| .++++++.++++.+..+. +...|+.....+.+.
T Consensus 125 ~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccccc
Confidence 57777777777665544 5666666666666666 666677776666665443 566666655554442
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 291 ---GEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVEN 330 (493)
Q Consensus 291 ---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 330 (493)
+.++++++.+++.+.... -|...|..+-..+.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 456888888888877533 367778777777776666433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.10 E-value=2.4e-05 Score=72.21 Aligned_cols=92 Identities=11% Similarity=-0.005 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQ 320 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~ 320 (493)
+...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|...|++++|++.|++..+... .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 4578889999999999999999999999987543 788999999999999999999999999988633 36777888888
Q ss_pred HHHhcCCHHHHHHH
Q 011137 321 VLCKKDSVENAILV 334 (493)
Q Consensus 321 ~~~~~~~~~~a~~~ 334 (493)
++...++.+++.+.
T Consensus 350 ~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 350 VKQKIKAQKDKEKA 363 (370)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888777653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00026 Score=69.18 Aligned_cols=172 Identities=8% Similarity=0.005 Sum_probs=122.1
Q ss_pred hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC-
Q 011137 119 YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGK----------ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK- 187 (493)
Q Consensus 119 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g- 187 (493)
.++|++.++.+...++ -+..+|+.--..+...|+ ++++++.++.+.+.. +.+..+|+.-.-++.+.|
T Consensus 45 ~eeal~~~~~~l~~nP-~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHCc-hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 3466777777666543 345566665555555555 778888888777654 456677777777777777
Q ss_pred -CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------
Q 011137 188 -KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK-RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRA---------- 255 (493)
Q Consensus 188 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~---------- 255 (493)
+++++++.++++.+..+.+..+|+.-...+.+.| .++++++.++++++..+. |..+|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 6688888888877777777778887777777777 778888888888776655 677777766666553
Q ss_pred ----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 011137 256 ----GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIK 294 (493)
Q Consensus 256 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 294 (493)
+.++++++.+++....... +...|..+-..+.+.++.+
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~ 243 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHD 243 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCS
T ss_pred cccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCcc
Confidence 4578888999888877544 7788888887777776643
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.08 E-value=5.8e-06 Score=62.25 Aligned_cols=91 Identities=8% Similarity=-0.031 Sum_probs=59.9
Q ss_pred hcCChHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHH
Q 011137 115 RLRDYRTVWTLVHRMKSLS--LGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKA 192 (493)
Q Consensus 115 ~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A 192 (493)
..|++++|...|++..+.+ -+.+..++..+..+|...|++++|+..|++..+.. +.+...+..+..++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 3567777777777777654 12345567777777778888888888888777654 44566777777778888888888
Q ss_pred HHHHHHhhcCCCCC
Q 011137 193 YNLFKVFRGKFKAD 206 (493)
Q Consensus 193 ~~~~~~~~~~~~~~ 206 (493)
...|++.....+.+
T Consensus 81 ~~~~~~al~~~p~~ 94 (117)
T 3k9i_A 81 VELLLKIIAETSDD 94 (117)
T ss_dssp HHHHHHHHHHHCCC
T ss_pred HHHHHHHHHhCCCc
Confidence 88777765543333
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.3e-05 Score=61.27 Aligned_cols=97 Identities=8% Similarity=0.020 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhC-------C----------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEH-------G----------CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~----------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
.+......+.+.|++++|+..|.+.... + .+.+...|..+..+|.+.|++++|+..++.....
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4444555556666666666666655542 0 0112234555555555555555555555555444
Q ss_pred CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 203 FKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
.+.+..+|..+..+|...|++++|...|++..+.
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4445555555555555555555555555555543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.99 E-value=5e-05 Score=60.88 Aligned_cols=62 Identities=15% Similarity=0.104 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 243 TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 243 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
..|..+..+|.+.|++++|+..++...+... .+...|..+..+|...|++++|...|++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKREE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 4455555555556666666666555555432 2455555555666666666666666665555
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.95 E-value=3.2e-05 Score=70.53 Aligned_cols=147 Identities=6% Similarity=-0.075 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLC 184 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 184 (493)
.+..+...+.+.|++++|...|++..... |+... +...|+.+++...+. ...|..+..+|.
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 35555566666777777777777765542 22221 111222222221110 125666777777
Q ss_pred ccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 011137 185 KEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKG-YFRAGQIEEAWR 263 (493)
Q Consensus 185 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~ 263 (493)
+.|++++|+..+++.....+.+..+|..+..+|...|++++|...|++..+.... +...+..+... ....+..+++.+
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777766655666677777777777777777777777777654322 33344444444 223455666677
Q ss_pred HHHHHHHC
Q 011137 264 FFLEMKKR 271 (493)
Q Consensus 264 ~~~~~~~~ 271 (493)
.|..+...
T Consensus 321 ~~~~~l~~ 328 (338)
T 2if4_A 321 MYKGIFKG 328 (338)
T ss_dssp --------
T ss_pred HHHHhhCC
Confidence 77776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00012 Score=57.28 Aligned_cols=94 Identities=14% Similarity=0.001 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-C-----CH-----HHHHHHHHHHHccCCHHHHHHHHHHhhcC------
Q 011137 140 TFAIIAERYVSAGKADRAVKIFLSMHEHGCR-Q-----SL-----NSFNTILDLLCKEKKVEKAYNLFKVFRGK------ 202 (493)
Q Consensus 140 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-----~~-----~~~~~ll~~~~~~g~~~~A~~~~~~~~~~------ 202 (493)
.+......+...|++++|+..|++..+.... | +. ..|..+..++.+.|++++|+..+++....
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555566667777777777766653211 0 11 14444455555555555555544443332
Q ss_pred -CCCCcchH----HHHHHHHHhcCChhHHHHHHHHH
Q 011137 203 -FKADVISY----NVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 203 -~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
.|.+...| .....++...|++++|+..|++.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 23333344 44444444444444444444444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00019 Score=55.67 Aligned_cols=109 Identities=8% Similarity=-0.005 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHHHHH
Q 011137 292 EIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCH----TGEMERAL 367 (493)
Q Consensus 292 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~ 367 (493)
++++|++.|++..+.|. ++.. +...|...+.+++|...|++..+.| +...+..+...|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 34445555555444431 1111 3334444444444555555544442 33444444444444 44555555
Q ss_pred HHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcC
Q 011137 368 EFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSG 411 (493)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 411 (493)
++|++..+.| +...+..|...|.. .+++++|.+.|++..+.
T Consensus 82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5555555443 34444455555554 45555555555555544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=71.83 Aligned_cols=149 Identities=13% Similarity=0.021 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHH
Q 011137 138 QKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGW 217 (493)
Q Consensus 138 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 217 (493)
...+..+...+.+.|++++|+..|++..... |+.. .+...|+.+++...+. ...|..+..+|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~---------~~~~~nla~~~ 240 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK---------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH---------THHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH---------HHHHHHHHHHH
Confidence 3456667777888889999999988877642 3322 1233444444443221 23788999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHH
Q 011137 218 CLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG-FGVVGEIKRA 296 (493)
Q Consensus 218 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A 296 (493)
.+.|++++|+..+++..+.... +...|..+..+|...|++++|...|++..+.... +...+..+... ....+..+.+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876543 6789999999999999999999999999876433 55566666655 3445677888
Q ss_pred HHHHHHHHHC
Q 011137 297 RNVFDGMVNG 306 (493)
Q Consensus 297 ~~~~~~~~~~ 306 (493)
...|..|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 9999988764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00011 Score=57.55 Aligned_cols=61 Identities=10% Similarity=-0.008 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 244 TYNIVLKGYFRAGQIEEAWRFFLEMKKR-------KCEIDVVTY----TTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 244 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~----~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
.|..+..++.+.|++++|+..+++.++. ... +...| .....++...|++++|+..|++.++
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 4445555555555555555555554443 221 33444 5555556666666666666665543
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0002 Score=55.45 Aligned_cols=111 Identities=10% Similarity=0.092 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 011137 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERG 401 (493)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 401 (493)
+++++|...|++..+.| .++.. +...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 35566666666666655 22222 4444555555666666666666654 45555566666655 5666666
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhc----cCCcccHHHHHHHHHHHHHCC
Q 011137 402 LELFEKMGSGVCLPNLDTYNILISSMFV----RKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~li~~~~~----~~~~~~~~~A~~~~~~m~~~g 450 (493)
.+.|++..+.| +...+..|...|.. .++.++ |.+++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~---A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQ---AVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH---HHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHH---HHHHHHHHHHCC
Confidence 66666666543 44555555555554 344444 666666665554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.80 E-value=1.8e-05 Score=58.65 Aligned_cols=60 Identities=8% Similarity=0.022 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
.|..+...+.+.|++++|...|++.....+ .+...+..+..++...|++++|++.+++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 65 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQP-QNPVGYSNKAMALIKLGEYTQAIQMCQQGL 65 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 333344444444444444444444433321 233334444444444444444444444443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.77 E-value=7.3e-05 Score=71.30 Aligned_cols=125 Identities=10% Similarity=-0.025 Sum_probs=81.0
Q ss_pred HHhccCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CC-CCC-hhhHH
Q 011137 286 GFGVVGEIKRARNVFDGMVNG---GVLP----SVATYNAMIQVLCKKDSVENAILVFEEMVGK-----GY-MPN-STTYN 351 (493)
Q Consensus 286 ~~~~~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~ 351 (493)
.+...|++++|+.++++.++. -..+ ...+++.|..+|...|++++|..++++..+- |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345677888888887776542 1111 1346777888888888888888877765532 21 222 35677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 352 VVIRGLCHTGEMERALEFVGRMKDD-----EC--EPNVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 352 ~li~~~~~~~~~~~a~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
.|...|...|++++|+.++++..+. |. +....+.+.+..++...|.+++|+.+|+++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777888888888888887776532 21 11233455666777777788888888877765
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.76 E-value=4e-05 Score=56.64 Aligned_cols=96 Identities=9% Similarity=-0.049 Sum_probs=81.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCC------cchH
Q 011137 137 TQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKAD------VISY 210 (493)
Q Consensus 137 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~ 210 (493)
+...+..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|+..+++.....+.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 46678888999999999999999999998764 5578889999999999999999999999988776656 6678
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
..+..++...|+.+.|.+.++++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHhHhhhHhHHHHh
Confidence 88888888888888877665543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00016 Score=68.95 Aligned_cols=126 Identities=9% Similarity=-0.036 Sum_probs=94.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-----CC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC-----CC-CCC-HHHHH
Q 011137 251 GYFRAGQIEEAWRFFLEMKKR-----KC--EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG-----GV-LPS-VATYN 316 (493)
Q Consensus 251 ~~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~ 316 (493)
.+...|++++|+.++++..+. |. +....+++.|...|...|++++|+.++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356789999999999887654 21 113567889999999999999999999987642 22 122 45788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGK-----GYM-PN-STTYNVVIRGLCHTGEMERALEFVGRMKDD 376 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 376 (493)
.|...|...|++++|+.++++..+- |.. |+ ..+...+-.++...+.+++|+.+|.++.+.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999877642 322 22 334566667788889999999999988763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00024 Score=52.91 Aligned_cols=62 Identities=11% Similarity=0.077 Sum_probs=24.1
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+...+..+...+...|++++|+..|++..+.... +...|..+..++...|++++|...|++.
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3333444444444444444444444444332211 2333333344444444444444444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00037 Score=49.04 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=8.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q 011137 144 IAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
+...+...|++++|+..|++..
T Consensus 15 la~~~~~~~~~~~A~~~~~~a~ 36 (91)
T 1na3_A 15 LGNAYYKQGDYDEAIEYYQKAL 36 (91)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHH
Confidence 3333333444444444443333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00034 Score=49.25 Aligned_cols=61 Identities=8% Similarity=0.153 Sum_probs=29.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
.+..+...+...|++++|...|++.....+.+...+..+...+...|++++|.+.+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444455555555555555544433333444444445555555555555555554444
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00025 Score=52.77 Aligned_cols=78 Identities=6% Similarity=-0.017 Sum_probs=41.0
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011137 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 235 (493)
|++.|++..+.. +.+...+..+..+|...|++++|...|++.....+.+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444432 234445555555555555555555555555444444455555555555566666666665555543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00016 Score=56.59 Aligned_cols=97 Identities=12% Similarity=0.037 Sum_probs=53.7
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH----------HHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV----------EKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
.+.+++|++.++...+.. +.+...|+.+..++...+++ ++|+..|++..+..|.+..+|+.+..+|...
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 344555555555555543 34555555555555555443 3666666655555555555666666666554
Q ss_pred -----------CChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 221 -----------KRTNKALEVLKEMVDRGLNPNLTTYNIVLK 250 (493)
Q Consensus 221 -----------~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 250 (493)
|++++|++.|++..+. .|+...|...+.
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 3667777777776654 344444443333
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00027 Score=55.21 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 259 EEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV-----------GEIKRARNVFDGMVNGGVLPSVATYNA 317 (493)
Q Consensus 259 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~ 317 (493)
++|+..|++.++.... +..+|..+..+|... |++++|++.|++.++ +.|+...|..
T Consensus 63 ~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~ 129 (158)
T 1zu2_A 63 QEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLK 129 (158)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHH
Confidence 3555555555554322 444455555555444 356666666666665 2344444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00081 Score=48.55 Aligned_cols=59 Identities=15% Similarity=0.152 Sum_probs=24.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
.+..+..+|...|++++|+..|++.....+.+...|..+..+|...|++++|.+.|++.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 33344444444444444444444433333333334444444444444444444444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0011 Score=47.88 Aligned_cols=63 Identities=19% Similarity=0.233 Sum_probs=33.4
Q ss_pred CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011137 206 DVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMK 269 (493)
Q Consensus 206 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 269 (493)
+...+..+...|...|++++|++.|++..+.... +...|..+..+|...|++++|.+.+++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555555555544322 33455555555555555555555555544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.024 Score=58.29 Aligned_cols=156 Identities=15% Similarity=0.124 Sum_probs=95.1
Q ss_pred HHHHhcCChhHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 011137 215 NGWCLVKRTNKALE-VLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEI 293 (493)
Q Consensus 215 ~~~~~~~~~~~A~~-~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 293 (493)
......+++++|.+ ++..+ ++......++..+.+.|..++|.++.+. .. .-.......|++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~ 668 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQL 668 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCH
T ss_pred hHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCH
Confidence 33445677777766 44211 1122336677777778888887766531 11 113344567888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 294 KRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 294 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
+.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...|+.+...++.+..
T Consensus 669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 8888775433 3667888888888888888888888877643 344555555567776666665555
Q ss_pred hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 011137 374 KDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMG 409 (493)
Q Consensus 374 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 409 (493)
...| -++.-..+|.+.|++++|.+++.++.
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 5543 12333445566777777777666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.018 Score=51.78 Aligned_cols=64 Identities=13% Similarity=0.009 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 276 DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 276 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 44444444444444455555555555544432 34444444444444455555555555444443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0071 Score=54.41 Aligned_cols=66 Identities=18% Similarity=0.149 Sum_probs=37.4
Q ss_pred CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 204 KADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 204 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++....
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444555555555555566666666666665543 45555555555555666666666666655554
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.055 Score=55.57 Aligned_cols=151 Identities=10% Similarity=0.088 Sum_probs=85.1
Q ss_pred HHhcCChHHHHH-HHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHH
Q 011137 113 AARLRDYRTVWT-LVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEK 191 (493)
Q Consensus 113 ~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 191 (493)
....+++++|.+ ++..+ ++......+++.+.+.|..+.|+++.+. .. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHH
Confidence 345677777765 44221 1123336677777778888877765421 11 11233456788888
Q ss_pred HHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 192 AYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 192 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++.+.....
T Consensus 671 A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 671 ARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 87765443 2566788888888888888888888877642 233444444566666555554444443
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 272 KCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 272 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
|. ++....+|.+.|++++|++++.
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~ 760 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLI 760 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHH
Confidence 21 1222333444555555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0023 Score=45.77 Aligned_cols=14 Identities=14% Similarity=0.359 Sum_probs=5.3
Q ss_pred cCCHHHHHHHHHHH
Q 011137 151 AGKADRAVKIFLSM 164 (493)
Q Consensus 151 ~g~~~~a~~~~~~~ 164 (493)
.|++++|+..|+++
T Consensus 13 ~~~~~~A~~~~~~a 26 (99)
T 2kc7_A 13 QGDIENALQALEEF 26 (99)
T ss_dssp HTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 33333333333333
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0031 Score=59.07 Aligned_cols=87 Identities=11% Similarity=0.021 Sum_probs=57.9
Q ss_pred hcCCHHHHHHHHHHHHhC---CCCC---C-hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-CCC-CHHHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGK---GYMP---N-STTYNVVIRGLCHTGEMERALEFVGRMKDD-----E-CEP-NVQTYNILI 389 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~---~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~ 389 (493)
..|++++|+.++++..+. -+.| + ..+++.+..+|...|++++|+.++++.+.. | -.| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777787777766542 1111 1 356777788888888888888887776542 2 112 234577888
Q ss_pred HHHHhcCCHHHHHHHHHHHhc
Q 011137 390 RYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 390 ~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888888888888877654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0051 Score=57.64 Aligned_cols=92 Identities=11% Similarity=-0.019 Sum_probs=62.2
Q ss_pred HHHHHccCCHHHHHHHHHHhhcC----CCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhC-----C-CCCC-HHH
Q 011137 180 LDLLCKEKKVEKAYNLFKVFRGK----FKAD----VISYNVIANGWCLVKRTNKALEVLKEMVDR-----G-LNPN-LTT 244 (493)
Q Consensus 180 l~~~~~~g~~~~A~~~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g-~~p~-~~~ 244 (493)
+.-+.+.|++++|+.++++.... ..++ ..+++.++..|...|++++|+.++++.... | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 33455677888888887766432 2222 246777888888888888888888876531 2 1222 356
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
++.|...|...|++++|+.++++..+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 788888888888888888888776653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.007 Score=56.72 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=59.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----C-CCC-CHHH
Q 011137 319 IQVLCKKDSVENAILVFEEMVGKG---YMP----NSTTYNVVIRGLCHTGEMERALEFVGRMKDD-----E-CEP-NVQT 384 (493)
Q Consensus 319 i~~~~~~~~~~~a~~~~~~~~~~~---~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~-~~~-~~~~ 384 (493)
+..+.+.|++++|+.++++..+.. +.| ...+++.+..+|...|++++|+.++++++.. | ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556677788888777776431 111 1346677777777788888888777766532 1 111 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777778888888888777776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0026 Score=59.53 Aligned_cols=62 Identities=6% Similarity=-0.033 Sum_probs=28.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh-----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVD-----RGL-NPN-LTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~-~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
+++.|...|...|++++|+.++++... .|. .|+ ..+++.|...|...|++++|+.++++..+
T Consensus 342 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 342 MMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 344444444444444444444444331 111 122 23455555555555555555555554443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.62 E-value=0.13 Score=38.20 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=91.8
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
+.-.|..++..++..+.... .+..-+|-+|--....-+-+-..++++.+.+.+.-+ .+|+.....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis------------~C~NlKrVi 81 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------KCQNLKSVV 81 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------GCSCTHHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH------------hhhcHHHHH
Confidence 44568888888888887763 355566666666666666666777777766544222 234444444
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
..+-.+- -+.......++.+...|+-|+-.+++..+... .++++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus 82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4443332 13445566677777888888888888776443 45567777778888888888888888888877776
Q ss_pred CC
Q 011137 308 VL 309 (493)
Q Consensus 308 ~~ 309 (493)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 53
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.018 Score=40.88 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=45.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQK-TFAIIAERYVSAGKADRAVKIFLSMHEHG 168 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 168 (493)
....+.+.|++++|...+++..+... .+.. .+..+..+|...|++++|++.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 44567778888888888888877643 4566 78888888888888888888888887754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.22 Score=39.42 Aligned_cols=45 Identities=11% Similarity=0.077 Sum_probs=22.2
Q ss_pred HccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 184 CKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 184 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
...|+++.|.++.+.+. +...|..|.......|+++-|.+.|.+.
T Consensus 16 L~lg~l~~A~e~a~~l~-----~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLN-----DSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHTTCHHHHHHHHHHHC-----CHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HhcCCHHHHHHHHHHhC-----CHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 34455555555444431 3444555555555555555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.075 Score=37.32 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 120 RTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 120 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
++|..++++..+..+ .++.+...+...+.+.|++++|+..|+.+.
T Consensus 26 ~~A~~~l~~AL~~dp-~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 26 DEVSLLLEQALQLEP-YNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444444333321 233333333334444444444444444443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.025 Score=39.87 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=17.3
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 011137 190 EKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMV 234 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 234 (493)
++|..++++.....|.++.+...+...+.+.|++++|+..|+++.
T Consensus 26 ~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l 70 (93)
T 3bee_A 26 DEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLL 70 (93)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333333333333333333333333333333444444444444333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.037 Score=42.70 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHHhccCCcccH
Q 011137 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCDAG---EIERGLELFEKMGSGVCLP--NLDTYNILISSMFVRKKSDDL 436 (493)
Q Consensus 362 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~~ 436 (493)
....+.+-|.+....+ .++..+.-.+..++++++ ++++++.++++..+.. .| +...+..+.-+|.+.|++++
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~- 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK- 89 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHH-
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHH-
Confidence 4556677777776665 468888888888888888 6668888888888753 23 35556666677888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHH
Q 011137 437 LVAGKLLIEMVDRGFMPRKFTF 458 (493)
Q Consensus 437 ~~A~~~~~~m~~~g~~p~~~~~ 458 (493)
|.+.++.+++ +.|+..--
T Consensus 90 --A~~y~~~lL~--ieP~n~QA 107 (152)
T 1pc2_A 90 --ALKYVRGLLQ--TEPQNNQA 107 (152)
T ss_dssp --HHHHHHHHHH--HCTTCHHH
T ss_pred --HHHHHHHHHh--cCCCCHHH
Confidence 8888888887 46764433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.18 Score=39.97 Aligned_cols=101 Identities=7% Similarity=0.097 Sum_probs=55.9
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 252 YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENA 331 (493)
Q Consensus 252 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 331 (493)
....|+++.|.++.+++ .+...|..|.+.....|+++-|++.|.+..+ +..+.-.|.-.|+.++.
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34556666666665554 1455666666666666666666666665432 33444445555666555
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 011137 332 ILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRM 373 (493)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~ 373 (493)
..+-+.....| -++....++...|+++++.++|.+.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 55544444432 2344444455566666666666443
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.61 Score=40.26 Aligned_cols=91 Identities=18% Similarity=0.153 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-CCHH
Q 011137 224 NKALEVLKEMVDRGLNPN---LTTYNIVLKGYFRA-----GQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVV-GEIK 294 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 294 (493)
..|...+++.++. .|+ ...|..+...|.+. |+.++|.+.|++..+.+..-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 5566666666654 344 45677777777773 88888888888888765543467777777877774 8888
Q ss_pred HHHHHHHHHHHCCCC--CCHHHHH
Q 011137 295 RARNVFDGMVNGGVL--PSVATYN 316 (493)
Q Consensus 295 ~A~~~~~~~~~~~~~--~~~~~~~ 316 (493)
.+.+.+++.+..... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888888876555 5543333
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.095 Score=45.23 Aligned_cols=85 Identities=16% Similarity=0.154 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCH
Q 011137 293 IKRARNVFDGMVNGGVLPS---VATYNAMIQVLCK-----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHT-GEM 363 (493)
Q Consensus 293 ~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~ 363 (493)
...|...+++.++. .|+ ...|..+...|.+ -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45666666666663 333 4466666666666 367777777777776654322355555666666663 677
Q ss_pred HHHHHHHHHhhhCCCC
Q 011137 364 ERALEFVGRMKDDECE 379 (493)
Q Consensus 364 ~~a~~~~~~~~~~~~~ 379 (493)
+++.+.+++.+.....
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 7777777777665433
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.063 Score=38.67 Aligned_cols=25 Identities=12% Similarity=-0.055 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRM 129 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~ 129 (493)
-+..+...+.+.|++..|...|+..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~A 31 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQA 31 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHH
Confidence 3334444444444444444444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.09 Score=40.53 Aligned_cols=80 Identities=10% Similarity=0.020 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 011137 329 ENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTG---EMERALEFVGRMKDDECEP--NVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
..+.+-|.+....|. ++..+...+..++++.+ +.++++.+++...+.. .| +...+-.|.-+|.+.|++++|++
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555544443 45555555666666666 4556666666666653 23 34455556666677777777777
Q ss_pred HHHHHhc
Q 011137 404 LFEKMGS 410 (493)
Q Consensus 404 ~~~~~~~ 410 (493)
.++.+.+
T Consensus 93 y~~~lL~ 99 (152)
T 1pc2_A 93 YVRGLLQ 99 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 7777766
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.12 Score=37.14 Aligned_cols=78 Identities=6% Similarity=-0.069 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcch
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG------CRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVIS 209 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 209 (493)
.+..-+..+...+...|+++.|...|+...+.- -.....++..+..++.+.|+++.|...+++.....|.+..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 466677788999999999999999999887531 13456788999999999999999999999887655555555
Q ss_pred HHHH
Q 011137 210 YNVI 213 (493)
Q Consensus 210 ~~~l 213 (493)
.+.+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 4443
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.55 E-value=2.5 Score=43.23 Aligned_cols=224 Identities=8% Similarity=0.004 Sum_probs=100.8
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCHHHHH--HHH
Q 011137 216 GWCLVKRTNKALEVLKEMVDRGLNPNL--TTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-------EIDVVTYT--TIV 284 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~--~li 284 (493)
+....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- .+....-. .|.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 344566666666666655432101122 2223333444555555566666655544311 00111112 222
Q ss_pred HHHhccCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhc
Q 011137 285 HGFGVVGEIKRARNVFDGMVNGGVLPSVA--TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIR--GLCHT 360 (493)
Q Consensus 285 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~--~~~~~ 360 (493)
-+|...++ +++.+.+..+..... .... .-..|...+.-.|+-+....++..+.+.. +......+.. ++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 22333343 344444454444211 0111 11122333445666666666666655531 2222222333 33456
Q ss_pred CCHHHHHHHHHHhhhCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHH
Q 011137 361 GEMERALEFVGRMKDDECEPNVQTY--NILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLV 438 (493)
Q Consensus 361 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~ 438 (493)
|+.+.+..+++.+.... .|....- ..+..+|+..|+.....+++..+.+. ...+..-...+.-++...|+.+.
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~--- 612 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTT--- 612 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSS---
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHH---
Confidence 77777777777766532 2222211 23444566677766666677776653 11223322333334444555555
Q ss_pred HHHHHHHHHHC
Q 011137 439 AGKLLIEMVDR 449 (493)
Q Consensus 439 A~~~~~~m~~~ 449 (493)
+.++++.+.+.
T Consensus 613 v~rlv~~L~~~ 623 (963)
T 4ady_A 613 VPRIVQLLSKS 623 (963)
T ss_dssp HHHHTTTGGGC
T ss_pred HHHHHHHHHhc
Confidence 55555555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.52 Score=35.13 Aligned_cols=137 Identities=8% Similarity=0.062 Sum_probs=70.7
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 011137 220 VKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNV 299 (493)
Q Consensus 220 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 299 (493)
.|.+++..++..+..... +..-||.+|--....-+-+-..++++.+-+. .|. ..+|++......
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence 466666666666665431 4445555555544455555555555544332 111 223444444444
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 011137 300 FDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDEC 378 (493)
Q Consensus 300 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 378 (493)
+-.+- .+....+..+..+...|.-++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.++-+.|+
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 43322 1334445555556666666666666666433 2345555666666666666666666666666665553
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.50 E-value=2 Score=43.96 Aligned_cols=243 Identities=11% Similarity=0.041 Sum_probs=139.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-------CCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCH--HHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVDRGL-------NPNLTTYNIVLKGYFRAGQ-IEEAWRFFLEMKKRKCEIDV--VTY 280 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~-------~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~--~~~ 280 (493)
..+.-+....|..+++..++.......- .+....-..+.-++.-.|. -+++.+.+..+...... .. ..-
T Consensus 415 AllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~Aa 493 (963)
T 4ady_A 415 SLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAA 493 (963)
T ss_dssp HHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHH
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHH
Confidence 3444556667776778887777664321 0112222333333433443 24566666666554211 11 122
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhCCCCCChh-hHH---HHH
Q 011137 281 TTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNA--MIQVLCKKDSVENAILVFEEMVGKGYMPNST-TYN---VVI 354 (493)
Q Consensus 281 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~---~li 354 (493)
..|...+...|+-+....++..+.+.. +...... +.-++...|+.+.+..+.+.+... .+.. -|. .+.
T Consensus 494 lALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alg 567 (963)
T 4ady_A 494 LGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIA 567 (963)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHH
T ss_pred HHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHH
Confidence 234445667888888888888877642 3333333 334455788999999998888764 2322 232 334
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcc
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSD 434 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 434 (493)
-+|+..|+.....++++.+.... ..+......+.-++...|+.+.+.++++.+.+.+ .|...--..+.-+....|...
T Consensus 568 lAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~ 645 (963)
T 4ady_A 568 LAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGL 645 (963)
T ss_dssp HHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCC
T ss_pred HHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCc
Confidence 56778889877777999888753 2334444444455556777777778887776653 345444444545555555553
Q ss_pred cHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011137 435 DLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467 (493)
Q Consensus 435 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 467 (493)
. +++..+..+.. .+|..+-...+.++..
T Consensus 646 ~--~aid~L~~L~~---D~d~~Vrq~Ai~ALG~ 673 (963)
T 4ady_A 646 Q--SAIDVLDPLTK---DPVDFVRQAAMIALSM 673 (963)
T ss_dssp H--HHHHHHHHHHT---CSSHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHcc---CCCHHHHHHHHHHHHH
Confidence 2 28888888875 4565554444444444
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.11 Score=38.43 Aligned_cols=82 Identities=12% Similarity=0.007 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhcCCCC-CCHHHHHHHHHHHhccCCcccHHH
Q 011137 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIER---GLELFEKMGSGVCL-PNLDTYNILISSMFVRKKSDDLLV 438 (493)
Q Consensus 363 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~~~~~~~~~ 438 (493)
...+.+-|.+....| .++..+--.+..++.++.+... ++.+++++.+.+.+ -.......|.-++.+.|++++
T Consensus 17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~--- 92 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK--- 92 (126)
T ss_dssp HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH---
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH---
Confidence 334444444443333 2444444455555555444333 55555555543211 122222333344555555555
Q ss_pred HHHHHHHHHH
Q 011137 439 AGKLLIEMVD 448 (493)
Q Consensus 439 A~~~~~~m~~ 448 (493)
|.+.++.+++
T Consensus 93 A~~~~~~lL~ 102 (126)
T 1nzn_A 93 ALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.25 Score=37.64 Aligned_cols=51 Identities=6% Similarity=-0.014 Sum_probs=23.8
Q ss_pred CCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 011137 326 DSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE 377 (493)
Q Consensus 326 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 377 (493)
++.++|.++|+.+++.+-.. ...|....+.-.+.|++..|.+++...+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45555555555554331111 3333333333344555555555555555544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.16 Score=38.69 Aligned_cols=101 Identities=11% Similarity=0.044 Sum_probs=51.8
Q ss_pred CCCHHHHHHHHHHHHhcCCh------HHHHHHHHHHhhCCCCCCH-HHHHHHHHH------HHHcCCHHHHHHHHHHHHh
Q 011137 100 AHSPSSFDHAIDLAARLRDY------RTVWTLVHRMKSLSLGPTQ-KTFAIIAER------YVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 100 ~~~~~~~~~li~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~g~~~~a~~~~~~~~~ 166 (493)
+.|.++|-..+..+.+.|++ ++..++|++.... ++|+. ..|...+.. +...++.++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34777888888887777887 7777777776654 33431 111111111 1223455555555555543
Q ss_pred CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 167 HGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 167 ~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
.. +.=..+|......-.+.|++..|.+++....+.
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~ 123 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVER 123 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc
Confidence 31 111444444444444555555555555544443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.4 Score=35.51 Aligned_cols=82 Identities=11% Similarity=-0.010 Sum_probs=49.4
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHH---HHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMER---ALEFVGRMKDDECEP--NVQTYNILIRYFCDAGEIERG 401 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 401 (493)
....+.+-|......|. ++..+-..+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 33444455554444333 455555556666666665444 777777766653 22 334445566777778888888
Q ss_pred HHHHHHHhc
Q 011137 402 LELFEKMGS 410 (493)
Q Consensus 402 ~~~~~~~~~ 410 (493)
.+.++.+.+
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877777
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.76 E-value=0.44 Score=35.45 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 415 PNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 415 p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
|+..+--.+..++++..+.++..+++.++++..+.+-.-....+..+.-++.+.|++++|+++.+.+.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 4444444444455555444444445555555554321011333334444555555555555555544443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.70 E-value=0.92 Score=34.23 Aligned_cols=67 Identities=6% Similarity=0.022 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 011137 379 EPNVQTYNILIRYFCDAGE---IERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 379 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
.|+..+--.+..++.++.+ ..+++.+++++...+..-.......+.-++.+.|++++ |.++.+.+++
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~---Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM---AKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHH---HHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHH---HHHHHHHHHh
Confidence 4455555555555555543 33455555555553211122333334445555666665 6666666655
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.25 E-value=5.4 Score=37.31 Aligned_cols=50 Identities=14% Similarity=0.168 Sum_probs=33.1
Q ss_pred CChHHHHHHHHHHhhC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 117 RDYRTVWTLVHRMKSL-----SLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 117 ~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 166 (493)
|+++.|++.+-.+.+. ...-.......++..|...|+++...+.+..+.+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 6777777766555432 2333466777788888888888877776665543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.83 E-value=6.2 Score=36.89 Aligned_cols=95 Identities=11% Similarity=0.136 Sum_probs=47.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCCC--HHH
Q 011137 316 NAMIQVLCKKDSVENAILVFEEMVGK--GYMPN---STTYNVVIRGLCHTGEMERALEFVGRMKD----DECEPN--VQT 384 (493)
Q Consensus 316 ~~li~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~ 384 (493)
..|...|...|++.+|..++..+... |.... ...+...++.|...+++..|..++.++.. ....|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 34455555666666666666555422 11111 12344455556666666666666665432 111121 123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+...+..+...+++.+|-..|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 45555555666666666666655543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.62 E-value=2.7e-06 Score=77.77 Aligned_cols=264 Identities=10% Similarity=0.042 Sum_probs=154.3
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYF 253 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 253 (493)
.+|..|..+..+.+++.+|++-|- +. .|+..|..++....+.|.+++-.+++....+..- +...=+.|+-+|+
T Consensus 55 ~VWs~LgkAqL~~~~v~eAIdsyI--kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayA 127 (624)
T 3lvg_A 55 AVWSQLAKAQLQKGMVKEAIDSYI--KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALA 127 (624)
T ss_dssp CCSSSHHHHTTTSSSCTTTTTSSC--CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred cHHHHHHHHHHccCchHHHHHHHH--hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence 455556666666666655553321 11 2455566666666666666666665544443322 2222334566666
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 254 RAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAIL 333 (493)
Q Consensus 254 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~ 333 (493)
+.++..+..+++ ..|+..-...+.+-|...|.++.|.-+|..+. -|..|...+.+.|++..|.+
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGSSTT
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHHHHH
Confidence 666554433332 12344344445555555555555555544322 13344445556666666543
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC
Q 011137 334 VFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC 413 (493)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 413 (493)
.-+ + .-++.||..+-.+|...+++..|.-.--.++-. ++ -...++..|...|.+++-+.+++.-... -
T Consensus 192 aAr---K---Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-E 259 (624)
T 3lvg_A 192 GAR---K---ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-E 259 (624)
T ss_dssp TTT---T---CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-T
T ss_pred HHH---h---cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-C
Confidence 322 2 236789999999999999988776655555432 11 2335778899999999999999988743 2
Q ss_pred CCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 414 LPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 414 ~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
.....+|+.|.-.|.+. ++++ ..+.++..-. ..-.-.+|++|.+.--|.++.-++....
T Consensus 260 rAHmGmFTELaILYsKY-~PeK---lmEHlklf~s------riNipKviracE~ahLW~ElvfLY~~yd 318 (624)
T 3lvg_A 260 RAHMGMFTELAILYSKF-KPQK---MREHLELFWS------RVNIPKVLRAAEQAHLWAELVFLYDKYE 318 (624)
T ss_dssp TCCHHHHHHHHHHHHSS-CTTH---HHHHHTTSSS------SSCCTTTHHHHTTTTCHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHHHhc-CHHH---HHHHHHHHHH------hccHHHHHHHHHHHhhHHHHHHHHhcch
Confidence 36888999999988876 3444 3333333222 2222347889999999999887765443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.51 Score=47.12 Aligned_cols=128 Identities=10% Similarity=-0.032 Sum_probs=80.5
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhC------CCC-CCHH--
Q 011137 106 FDHAIDLAARLRD-YRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG-KADRAVKIFLSMHEH------GCR-QSLN-- 174 (493)
Q Consensus 106 ~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~------~~~-~~~~-- 174 (493)
-..++..+...|+ .+.|..+++++.......+......++..+...+ +--+|.+++.+..+. ..+ .+..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 4455555555666 5789999999988653222222223333332222 223455555444321 111 1111
Q ss_pred --------HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 175 --------SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 175 --------~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
..+.=.+.+...|+++.|+.+-++...-.|.+-.+|..|..+|...|+++.|+-.+.-+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 12222344667899999999998887777778889999999999999999999888876
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.79 E-value=6.5 Score=41.99 Aligned_cols=130 Identities=12% Similarity=0.094 Sum_probs=67.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS----TTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILI 389 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 389 (493)
-|..++..+.+.+.++.+.++-...++....-+. ..|..+..++...|++++|...+-.+..... -......|+
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV 978 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKSCLLDFV 978 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHHHHHHHH
Confidence 3555666666666666666665554433111111 1455666666677777777666666554432 234455555
Q ss_pred HHHHhcCC------------HHHHHHHHHHHhcC--CCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHH
Q 011137 390 RYFCDAGE------------IERGLELFEKMGSG--VCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMV 447 (493)
Q Consensus 390 ~~~~~~g~------------~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~ 447 (493)
..+|..|. .++..+++..-.+. .....+.-|..|-.-+..+|++..+ |.-+++.+.
T Consensus 979 ~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~A--A~vmYe~~~ 1048 (1139)
T 4fhn_B 979 NQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDA--AAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCH--HHHHHHHHH
T ss_pred HHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHH--HHHHHHHHH
Confidence 55554443 33444444322111 0111223456666666778888884 444555544
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=91.62 E-value=1.1 Score=31.24 Aligned_cols=45 Identities=13% Similarity=0.119 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
++.+-+..+-.....|++....+.+++|.+.+++..|+.+|+-++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444455555555555555555555555555555544
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.45 E-value=0.6 Score=42.93 Aligned_cols=69 Identities=9% Similarity=0.082 Sum_probs=37.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-----RKCEIDVVTYT 281 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 281 (493)
.++..+...|++++|...+..+.....- +...|..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445555556666666555555544222 555566666666666666666666555433 25555555443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.26 E-value=1.2 Score=44.46 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=31.5
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKM 408 (493)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 408 (493)
|...|+++.|+++-++..... +-+-.+|..|..+|...|+++.|+-.++-+
T Consensus 347 Ll~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 347 LLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 445566666666666666542 334566666666666666666666666655
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=0.8 Score=42.10 Aligned_cols=69 Identities=7% Similarity=0.024 Sum_probs=44.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhc-----CCCCCCHHH
Q 011137 350 YNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGS-----GVCLPNLDT 419 (493)
Q Consensus 350 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~ 419 (493)
...++.++...|+++++...+..+.... +.+...|..+|.++.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3345556666777777777776666553 45666777777777777777777777766543 266666544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=90.97 E-value=0.00064 Score=62.53 Aligned_cols=88 Identities=10% Similarity=0.083 Sum_probs=49.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
|+..|..+|.++.+.|.+++.++.+...++..- ++..=+.++-+|++.++..+-.+++. .|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 555677777777777777777776666555432 22333456666777766544333221 244444445566
Q ss_pred HHHccCCHHHHHHHHHH
Q 011137 182 LLCKEKKVEKAYNLFKV 198 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~ 198 (493)
-|...|.++.|.-+|..
T Consensus 153 rcf~e~lYeAAKilys~ 169 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNN 169 (624)
T ss_dssp HHHHSCCSTTSSTTGGG
T ss_pred HHHHccCHHHHHHHHHh
Confidence 66666666666555543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=88.87 E-value=3.8 Score=30.43 Aligned_cols=59 Identities=10% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011137 121 TVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 121 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 180 (493)
+..+-+..+....+.|++......+++|.+.+++..|+.+|+-++.. +.+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 44444444445555566666666666666666666666666555532 122333444444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.86 E-value=5.4 Score=29.69 Aligned_cols=47 Identities=4% Similarity=-0.077 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 011137 295 RARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGK 341 (493)
Q Consensus 295 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 341 (493)
+++.+++++.+.+..-....+-.+.-++.+.|++++|.+..+.+.+.
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 34444444444321112233334444445555555555555544443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=88.72 E-value=9.6 Score=40.69 Aligned_cols=147 Identities=10% Similarity=0.019 Sum_probs=100.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CC--------------
Q 011137 317 AMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDD----EC-------------- 378 (493)
Q Consensus 317 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~-------------- 378 (493)
.++..+...+..+.+.++...... ++..--.+..+|...|++++|.++|++.... ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 455556667777766665443322 3444445667788999999999999876321 00
Q ss_pred ----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC----HHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCC
Q 011137 379 ----EPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN----LDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 379 ----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g 450 (493)
..-..-|..++..+.+.|.++.+.++-+...+....-+ ...|..+...+...|++++ |...+-.+.+..
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~---Ay~aL~~~pd~~ 968 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDA---AHVALMVLSTTP 968 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGG---GGHHHHHHHHSS
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHH---HHHHHHhCCCHH
Confidence 11123477888889999999999888877665321112 2368889999999999999 888888887754
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHH
Q 011137 451 FMPRKFTFNRVLNGLLLIGNQGL 473 (493)
Q Consensus 451 ~~p~~~~~~~l~~~~~~~g~~~~ 473 (493)
. -...+..|+..+|+.|..+.
T Consensus 969 ~--r~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 969 L--KKSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp S--CHHHHHHHHHHHHHHCCHHH
T ss_pred H--HHHHHHHHHHHHHhCCChhh
Confidence 3 46778888888887776554
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.03 E-value=5.2 Score=27.99 Aligned_cols=41 Identities=17% Similarity=0.169 Sum_probs=20.2
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILR 479 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 479 (493)
..+-++.+....+.|+..+..+.+++|.+.+++..|.++++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE 69 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILE 69 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33444444444445555555555555555555555555554
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.08 E-value=24 Score=34.53 Aligned_cols=268 Identities=10% Similarity=0.050 Sum_probs=142.6
Q ss_pred HHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 011137 88 HFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEH 167 (493)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 167 (493)
++-..+...++.+.....-+.-+..+.+.+++.....++.. .+.+...-.....+....|+..+|......+-..
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~ 131 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Confidence 44445555666555555556667778888888877765433 2345655566677777888887777766666554
Q ss_pred CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh----c-----------CCCCCcch-HHHHHHHHHhcCChhHHHHHHH
Q 011137 168 GCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR----G-----------KFKADVIS-YNVIANGWCLVKRTNKALEVLK 231 (493)
Q Consensus 168 ~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~----~-----------~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~ 231 (493)
| ......+..++..+.+.|.+.... +..+|. . ..+++... ...++..+. +...+.....
T Consensus 132 ~-~~~p~~c~~l~~~~~~~g~lt~~~-~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~---~p~~~~~~~~ 206 (618)
T 1qsa_A 132 G-KSQPNACDKLFSVWRASGKQDPLA-YLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFAR 206 (618)
T ss_dssp S-SCCCTHHHHHHHHHHHTTCSCHHH-HHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHH
T ss_pred C-CCCcHHHHHHHHHHHHCCCCCHHH-HHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHh---ChHhHHHHHh
Confidence 4 334556777777777666543321 111111 1 11111111 111111111 1122221111
Q ss_pred HHHhCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 232 EMVDRGLNPNLT---TYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVT----YTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 232 ~m~~~g~~p~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
. +.++.. .+...+.-+.+ .+.+.|...+....+... .+... +..+...+...+...++...+....
T Consensus 207 ~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~ 279 (618)
T 1qsa_A 207 T-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAI 279 (618)
T ss_dssp H-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHH
T ss_pred c-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcc
Confidence 1 112222 11122233333 377888888887765432 23222 2233334444553445555666555
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 305 NGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 305 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
... .+.....-.+....+.|+++.|...|..|...... ...-.--+.+++...|+.++|..+|+.+..
T Consensus 280 ~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 280 MRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred ccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 432 33333444444555678899998888887654221 333445566677788888888888888874
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.71 E-value=6 Score=29.39 Aligned_cols=63 Identities=16% Similarity=0.302 Sum_probs=41.8
Q ss_pred CHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 011137 327 SVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIR 390 (493)
Q Consensus 327 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 390 (493)
|.-+..+-++.+....+.|++......+++|-+.+|+..|.++++-++.+- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 444566666667777777777777777777777777777777777776552 233445555544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.45 E-value=7.6 Score=30.20 Aligned_cols=28 Identities=7% Similarity=0.124 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
+.--.+..+|.+.|++++|+.+++.+..
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 4444567777788888888887776643
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.43 E-value=9.3 Score=29.71 Aligned_cols=61 Identities=11% Similarity=0.032 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCCH-------HHHHHHHHHHHccCCHHHHHHHHHHh
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHG-CRQSL-------NSFNTILDLLCKEKKVEKAYNLFKVF 199 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-------~~~~~ll~~~~~~g~~~~A~~~~~~~ 199 (493)
.++..-++.+...|.++.|+-+.+.+.... ..++. .++..+.+++...|++..|...|++.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 344555666777777777777766654321 12331 24455666777777777777777664
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.71 E-value=12 Score=28.20 Aligned_cols=21 Identities=10% Similarity=-0.110 Sum_probs=8.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 011137 320 QVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~ 340 (493)
-++.+.|++++|.+..+.+.+
T Consensus 85 vg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 85 IGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHh
Confidence 334444444444444444433
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.28 E-value=7.6 Score=33.01 Aligned_cols=53 Identities=15% Similarity=0.288 Sum_probs=31.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhh
Q 011137 147 RYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFR 200 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 200 (493)
...+.|+++.+++....-++.. +.|...-..+++.+|-.|+++.|.+-++...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a 58 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSI 58 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445566666666665555543 4555556666666666666666665555443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=82.53 E-value=8.6 Score=26.80 Aligned_cols=77 Identities=9% Similarity=0.046 Sum_probs=47.5
Q ss_pred hChHHHHHHHHHhhcCCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 011137 81 NHALKALHFFNILSYHPTYAHSPSSFDHA--IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAV 158 (493)
Q Consensus 81 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 158 (493)
+..++|..+-+|+...+ + ...-.+ +..+.+.|++++|..+.+.+. .||...|..+.. .+.|..+++.
T Consensus 21 H~HqEA~tIAdwL~~~~----~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKG----E-EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TCHHHHHHHHHHHHHTT----C-HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHhCC----c-HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHH
Confidence 45677888888887654 2 222333 345667777777777665543 466666665544 4566666666
Q ss_pred HHHHHHHhCC
Q 011137 159 KIFLSMHEHG 168 (493)
Q Consensus 159 ~~~~~~~~~~ 168 (493)
..+..+...|
T Consensus 90 ~rL~~la~sg 99 (116)
T 2p58_C 90 SRLNRLARSQ 99 (116)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHHhCC
Confidence 6666665554
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.80 E-value=25 Score=32.61 Aligned_cols=98 Identities=7% Similarity=-0.014 Sum_probs=65.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHH--HH
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDR--GLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR---KCEIDVVT--YT 281 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~--~~ 281 (493)
++..+...|.+.|++++|.+.|.++... +..--...+-.+++.+...+++..+...+.++... +..++... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 5677888888888888888888888753 22333456777888888888988888888876543 22222211 11
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 282 TIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 282 ~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
.-...+...+++..|-..|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1122345668888888888776543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.53 E-value=24 Score=30.02 Aligned_cols=115 Identities=12% Similarity=0.139 Sum_probs=72.6
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHhccCC
Q 011137 355 RGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVC--LPNLDTYNILISSMFVRKK 432 (493)
Q Consensus 355 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~li~~~~~~~~ 432 (493)
....+.|++++|+.....-++.. +-|...=..|++.+|-.|++++|.+-++...+... .|-...|..+|.+=
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE----- 78 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA----- 78 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence 34567888999998888888775 66777788889999999999999888887776421 12233455555421
Q ss_pred cccHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHh
Q 011137 433 SDDLLVAGKLLIEMVDRG-----FMPRKFTFNRVLNGL--LLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 433 ~~~~~~A~~~~~~m~~~g-----~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~ 483 (493)
..=.+...-+ +.....-...++.++ ...|+.++|.++-+.+.+
T Consensus 79 --------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e 128 (273)
T 1zbp_A 79 --------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 128 (273)
T ss_dssp --------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Confidence 1111122111 112233444555544 457999999888876654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=80.91 E-value=33 Score=31.26 Aligned_cols=225 Identities=9% Similarity=0.059 Sum_probs=97.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCC---CCHHHHHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCCHHHHHH--
Q 011137 247 IVLKGYFRAGQIEEAWRFFLEMKKR--KCE---IDVVTYTTIVHGFGVVGEIKRARNVFDGMVNG--GVLPSVATYNA-- 317 (493)
Q Consensus 247 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~-- 317 (493)
.++..|...|++.+|.+++..+.+. ... .-...|..-+..|...+++.++...+...... .+.++......
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 3555566666666666655555442 111 11233444455566666666666666655332 12122221111
Q ss_pred --HHHHHH-hcCCHHHHHHHHHHHHhC-C-C-CC---ChhhHHHHHHHHHhcCCHHHHHHHHH-HhhhCCCCCCHHHHHH
Q 011137 318 --MIQVLC-KKDSVENAILVFEEMVGK-G-Y-MP---NSTTYNVVIRGLCHTGEMERALEFVG-RMKDDECEPNVQTYNI 387 (493)
Q Consensus 318 --li~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~---~~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 387 (493)
-...+. ..+++..|...|-+..+. . . .| +...|.. +.+... ++..+.-.++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlv-L~aLl~-~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYML-LCKIML-GQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHHHHT-TCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHH-HHHHHc-CCHHHHHHHhccccccccCCccHHHHHH
Confidence 112234 566777776666554321 0 0 01 1112222 222222 22222222221 1111112355555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 011137 388 LIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLL 467 (493)
Q Consensus 388 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 467 (493)
++.+| ..+++.+...+++..... +..|......+-..+.. . -...+.++.+ .-...++..+...+.-
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~l~~h~~~L~~~---I-----r~~~L~~i~~---pYsrIsl~~iA~~l~l 328 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKE-LAEDVIVQAHLGTLYDT---M-----LEQNLCRIIE---PYSRVQVAHVAESIQL 328 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTT-TTTSHHHHHHHHHHHHH---H-----HHHHHHHHHT---TCSEEEHHHHHHHHTC
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHH-HhcChHHHHHHHHHHHH---H-----HHHHHHHHhH---hhceeeHHHHHHHHCc
Confidence 66665 456777766666665432 33454422111110000 0 1122222221 1234455555544432
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 011137 468 IGNQGLAKEILRLQSRCGRLP 488 (493)
Q Consensus 468 ~g~~~~a~~~~~~~~~~g~~~ 488 (493)
..++++..+-.|...|...
T Consensus 329 --s~~evE~~L~~lI~dg~I~ 347 (394)
T 3txn_A 329 --PMPQVEKKLSQMILDKKFS 347 (394)
T ss_dssp --CHHHHHHHHHHHHHTTSSC
T ss_pred --CHHHHHHHHHHHHHCCCee
Confidence 5677777777777776654
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.80 E-value=30 Score=30.64 Aligned_cols=111 Identities=12% Similarity=0.058 Sum_probs=57.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHhCCCCCCHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIF----LSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~ll 180 (493)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++- +-..+.+.++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4556666677777777777765442 22334445554443333 3444556667766666666
Q ss_pred HHHHccCCHH--------HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 011137 181 DLLCKEKKVE--------KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230 (493)
Q Consensus 181 ~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 230 (493)
..+.....-+ +|+.+=........-|......+...|.+.+++.+|...|
T Consensus 102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 6665544311 1111111111112224455566666666666666666655
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=80.49 E-value=34 Score=31.17 Aligned_cols=168 Identities=9% Similarity=0.014 Sum_probs=83.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC--CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHH-
Q 011137 212 VIANGWCLVKRTNKALEVLKEMVDR--GLNP---NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK--CEIDVVTYTTI- 283 (493)
Q Consensus 212 ~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l- 283 (493)
.++..|...|++.+|.+++.++.+. .... -...|..-+..|...+++.++...+....... +.+++.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 4667777777777777777776542 1110 12345555667777788888777777665431 22233222211
Q ss_pred ---HHHHh-ccCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCChhhHHH
Q 011137 284 ---VHGFG-VVGEIKRARNVFDGMVNGGVLPS------VATYNAMIQVLCKKDSVENAILVFE-EMVGKGYMPNSTTYNV 352 (493)
Q Consensus 284 ---i~~~~-~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ 352 (493)
...+. ..+++..|...|-+..+.-...+ ...|..+.... .++..+...++. .....-..|....+..
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei~~l~~ 261 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccHHHHHH
Confidence 12244 67788887777766543200111 11232222222 222222222221 1111112344455566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 011137 353 VIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383 (493)
Q Consensus 353 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 383 (493)
++.++ ..+++.+...++...... +..|..
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~~-l~~D~~ 290 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKKE-LAEDVI 290 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTTT-TTTSHH
T ss_pred HHHHH-HhCCHHHHHHHHHHHHHH-HhcChH
Confidence 66654 456777777777665432 344544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=80.02 E-value=30 Score=30.28 Aligned_cols=111 Identities=13% Similarity=0.061 Sum_probs=52.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHhCCCCCCHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI----FLSMHEHGCRQSLNSFNTIL 180 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~~~~ll 180 (493)
.|.++..=|.+.+++++|.+++..- ...+.+.|+...|-++ .+-..+.+.+++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3555555566666666666655442 1223344554444332 33344455666666666666
Q ss_pred HHHHccCCHH--------HHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHH
Q 011137 181 DLLCKEKKVE--------KAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVL 230 (493)
Q Consensus 181 ~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 230 (493)
..+.....-+ .|+.+-........-++.....+...|.+.|++.+|...|
T Consensus 100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 5554432111 1111111111111224455566666666666666665544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 493 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.65 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.3 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.28 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.26 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.25 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.21 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.14 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.74 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.71 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.68 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.64 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.63 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.58 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.54 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.52 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.49 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.43 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.35 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.34 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.22 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.22 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.06 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.98 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.97 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.96 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.89 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.88 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.83 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.82 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.76 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.72 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.64 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.64 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.56 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.18 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.16 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.86 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.82 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.49 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.27 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.27 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.13 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.11 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.62 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.12 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.94 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 91.61 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.52 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.8e-21 Score=181.01 Aligned_cols=376 Identities=11% Similarity=0.029 Sum_probs=307.9
Q ss_pred hhChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 011137 80 WNHALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVK 159 (493)
Q Consensus 80 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 159 (493)
..+.+.|++.++.+.... |.++..+..+..++.+.|++++|...+++..+..+ .+..++..+...|...|++++|+.
T Consensus 12 ~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~~~~A~~ 88 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQLQEAIE 88 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcccccccc
Confidence 356788999998876543 45788899999999999999999999999887653 467889999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011137 160 IFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
.+....+.. +.+..............+....+............................+....+...+.+.......
T Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (388)
T d1w3ba_ 89 HYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN 167 (388)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT
T ss_pred ccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcc
Confidence 999988764 3445555555555666666666666655555445556667777777888888899998888888765433
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011137 240 PNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMI 319 (493)
Q Consensus 240 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li 319 (493)
+...+..+...+...|++++|...+++..+.... +...+..+...+...|++++|+..+++....+. .+...+..+.
T Consensus 168 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 244 (388)
T d1w3ba_ 168 -FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLA 244 (388)
T ss_dssp -CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred -hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHH
Confidence 5678888899999999999999999998886443 678889999999999999999999999887643 3677788889
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 011137 320 QVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIE 399 (493)
Q Consensus 320 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 399 (493)
..+.+.|++++|...|++..+.... +...+..+...+...|++++|++.++...... +.+...+..+...+.+.|+++
T Consensus 245 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 322 (388)
T d1w3ba_ 245 CVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHH
Confidence 9999999999999999999887432 56788889999999999999999999988764 667888999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 011137 400 RGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGN 470 (493)
Q Consensus 400 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 470 (493)
+|++.|++..+.. +-+..++..+..++...|++++ |.+.+++.++. .|+ ...|..+..+|.+.||
T Consensus 323 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 323 EAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQE---ALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHH---HHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 9999999998852 2357788999999999999999 99999999874 665 7788888888888876
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=2.4e-21 Score=180.16 Aligned_cols=363 Identities=11% Similarity=0.079 Sum_probs=307.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC
Q 011137 109 AIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK 188 (493)
Q Consensus 109 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 188 (493)
+...+.+.|++++|.+.++++.+..+ -+..++..+...|.+.|++++|+..|+++.+.. +.+..++..+..+|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence 34567789999999999999987653 578899999999999999999999999998764 5567889999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011137 189 VEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEM 268 (493)
Q Consensus 189 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 268 (493)
+++|...+.......+.+...+..........+....+............. ...............+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHh
Confidence 999999999988776777777777777777788888877777776655443 4455666677777888899998888888
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChh
Q 011137 269 KKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNST 348 (493)
Q Consensus 269 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 348 (493)
..... .+...+..+...+...|++++|...+++..+... -+...+..+...+...|++++|...++.....+. .+..
T Consensus 162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 238 (388)
T d1w3ba_ 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAV 238 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHH
T ss_pred hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHH
Confidence 77643 3678888899999999999999999999887532 3677889999999999999999999999887643 3667
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHh
Q 011137 349 TYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMF 428 (493)
Q Consensus 349 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 428 (493)
.+..+...+.+.|++++|...|+++.+.. +-+..++..+...+...|++++|.+.++..... .+.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHH
Confidence 78888999999999999999999998874 456889999999999999999999999998875 3457888999999999
Q ss_pred ccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q 011137 429 VRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSRC 484 (493)
Q Consensus 429 ~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 484 (493)
..|++++ |++.+++.++. .|+ ..++..+..++...|++++|.+.++...+.
T Consensus 317 ~~~~~~~---A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 317 EQGNIEE---AVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTTCHHH---HHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HCCCHHH---HHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999 99999999874 555 677888999999999999999999988764
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=5.1e-14 Score=126.77 Aligned_cols=243 Identities=10% Similarity=0.020 Sum_probs=144.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCCh
Q 011137 144 IAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRT 223 (493)
Q Consensus 144 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 223 (493)
....+.+.|++++|+..|+++.+.. +.+...|..+..++...|++++|...|++.....|.+...|..++..|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 3445556666666666666666543 334556666666666666666666666665544444555666666666666666
Q ss_pred hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 011137 224 NKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 224 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 303 (493)
++|.+.+++....... ............ ...+.......+..+...+...+|.+.|.+.
T Consensus 104 ~~A~~~~~~~~~~~~~--~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYTPA--YAHLVTPAEEGA-------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTSTT--TGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccc--hHHHHHhhhhhh-------------------hhcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 6666666665543211 100000000000 0000000111122233445566777777776
Q ss_pred HHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 011137 304 VNGGV-LPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNV 382 (493)
Q Consensus 304 ~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 382 (493)
.+... ..+...+..+...+...|++++|...+++....... +...|..+..++...|++++|.+.++++++.. +-+.
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 240 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYI 240 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHh-hccH
Confidence 65322 234566777777788888888888888877765322 56677777888888888888888888877653 3356
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 383 QTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 383 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..|..++.+|.+.|++++|++.|++..+
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888888888888888888887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.65 E-value=6.2e-14 Score=126.21 Aligned_cols=244 Identities=11% Similarity=0.033 Sum_probs=167.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccC
Q 011137 108 HAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEK 187 (493)
Q Consensus 108 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 187 (493)
-....+.+.|++++|...|+++.+..+ -+..+|..+..++...|++++|+..|.+..+.. +.+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDP-KHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 455668899999999999999998764 478899999999999999999999999998764 456788999999999999
Q ss_pred CHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011137 188 KVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLE 267 (493)
Q Consensus 188 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 267 (493)
++++|.+.++......+.....+......... .+.......+..+...+...++.+.+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGG--------------------AGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhhhh--------------------cccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 99999999998776433332221111000000 0000111112223344555666666666
Q ss_pred HHHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 011137 268 MKKRKC-EIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN 346 (493)
Q Consensus 268 ~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 346 (493)
..+... ..+..++..+...+...|++++|+..|++...... -+..+|..+...|...|++++|...+++..+.... +
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~ 239 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-Y 239 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHhhc-c
Confidence 655432 23456667777777777788888877777766432 25667777777777888888888888777765322 4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 011137 347 STTYNVVIRGLCHTGEMERALEFVGRMKD 375 (493)
Q Consensus 347 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 375 (493)
...+..+..+|.+.|++++|+..|++.++
T Consensus 240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 240 IRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56677777778888888888888877765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4.9e-10 Score=99.35 Aligned_cols=197 Identities=9% Similarity=0.059 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011137 103 PSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAG-KADRAVKIFLSMHEHGCRQSLNSFNTILD 181 (493)
Q Consensus 103 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 181 (493)
...|+.+..++.+.+.+++|+.+++.+....+ -+..+|.....++...| ++++|+..++...+.. +.+..+|+.+..
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP-~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~ 120 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC-CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhH
Confidence 55666666677777777888888877777653 45667777777776655 4777777777776654 456677777777
Q ss_pred HHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----
Q 011137 182 LLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ---- 257 (493)
Q Consensus 182 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~---- 257 (493)
++.+.|++++|+..++++.+..+.+..+|..+...+.+.|++++|++.++++++.++. +...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 7777777777777777777666667777777777777777777777777777766444 55666666655555443
Q ss_pred --HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 258 --IEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 258 --~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
+++|++.+....+.... +...|..+...+...| .+++.+.++...
T Consensus 200 ~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~~~-~~~~~~~~~~~~ 246 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRG-LSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTC-GGGCHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHhcC-hHHHHHHHHHHH
Confidence 34555555555554322 4444444444433322 344444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=4.3e-10 Score=99.71 Aligned_cols=183 Identities=6% Similarity=-0.029 Sum_probs=100.3
Q ss_pred ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 011137 82 HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLR-DYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKI 160 (493)
Q Consensus 82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 160 (493)
..++|+..++.+.+.. |.+...|+....++...| ++++|+..++......+ -+..+|..+...+.+.|++++|++.
T Consensus 58 ~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~~~~~l~~~~eAl~~ 134 (315)
T d2h6fa1 58 RSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEF 134 (315)
T ss_dssp CCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHH
T ss_pred chHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhHHHHhhccHHHHHHH
Confidence 3456666666554432 335556666666655544 35666666666555432 3555666666666666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC------hhHHHHHHHHHH
Q 011137 161 FLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR------TNKALEVLKEMV 234 (493)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~A~~~~~~m~ 234 (493)
++++.+.. +.+..+|..+..++.+.|++++|++.++...+..+.+..+|+.+...+.+.+. +++|++.+.+..
T Consensus 135 ~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al 213 (315)
T d2h6fa1 135 IADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 213 (315)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHH
Confidence 66666543 34455666666666666666666666666555555555566655555544443 345555555555
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011137 235 DRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK 270 (493)
Q Consensus 235 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 270 (493)
+..+. +...|+.+...+.. ...+++.+.++...+
T Consensus 214 ~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~ 247 (315)
T d2h6fa1 214 KLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLD 247 (315)
T ss_dssp HHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHH
T ss_pred HhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHH
Confidence 54332 44455544444332 234455555555444
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=6.6e-10 Score=100.46 Aligned_cols=270 Identities=11% Similarity=0.042 Sum_probs=128.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHccCCHHHHHHHHHHhhcC---CCC---CcchH
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQS----LNSFNTILDLLCKEKKVEKAYNLFKVFRGK---FKA---DVISY 210 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~---~~~---~~~~~ 210 (493)
.......+...|++++|++++++..+.....+ ...+..+..++...|++++|...|++.... ... ...++
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 33345556667777777777777665421111 234555566666677777777776654331 110 11234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHh----CCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHH
Q 011137 211 NVIANGWCLVKRTNKALEVLKEMVD----RGLNP---NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRK----CEIDVVT 279 (493)
Q Consensus 211 ~~l~~~~~~~~~~~~A~~~~~~m~~----~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~ 279 (493)
..+...+...|++..+...+.+... .+... ....+..+...+...|+++.+...+....... .......
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 4455556666666666666655432 11111 11233444555556666666666665554431 1112333
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHC--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---hhhH
Q 011137 280 YTTIVHGFGVVGEIKRARNVFDGMVNG--GVLPS----VATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPN---STTY 350 (493)
Q Consensus 280 ~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~ 350 (493)
+..+...+...++...+...+.+.... ..... ...+..+...+...|+.++|...+..........+ ...+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 444444555555555555555544321 00001 11233334444555555555555554443321111 1223
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 351 NVVIRGLCHTGEMERALEFVGRMKDD----ECEPN-VQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 351 ~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
..+..++...|++++|...++.+... +..|+ ...+..+...|.+.|++++|.+.+++..+
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444555555555555555554321 11111 23444455555555555555555555443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.28 E-value=1.1e-09 Score=99.09 Aligned_cols=271 Identities=12% Similarity=0.081 Sum_probs=181.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc-----chHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCC-CHHH
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV-----ISYNVIANGWCLVKRTNKALEVLKEMVDRG----LNP-NLTT 244 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g----~~p-~~~~ 244 (493)
........+...|++++|++++++.....+.+. .++..+...+...|++++|++.+++..+.. ..+ ....
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 334445667788999999999888766544432 356777888888999999999988876431 111 1244
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC----CCCCHH
Q 011137 245 YNIVLKGYFRAGQIEEAWRFFLEMKKR----KCEI---DVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG----VLPSVA 313 (493)
Q Consensus 245 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~ 313 (493)
+..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+....... ......
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 173 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 173 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence 566677788888988888888776542 1111 12345566777888888888888888876532 222234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---CCHHH
Q 011137 314 TYNAMIQVLCKKDSVENAILVFEEMVGK----GYMP--NSTTYNVVIRGLCHTGEMERALEFVGRMKDDECE---PNVQT 384 (493)
Q Consensus 314 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~ 384 (493)
.+..+...+...++...+...+.+.... +..+ ....+......+...|++++|...++........ .....
T Consensus 174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 253 (366)
T d1hz4a_ 174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 253 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence 5556666777888888888887665432 1111 1223455566677788888888888887654222 22445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcC----CCCCC-HHHHHHHHHHHhccCCcccHHHHHHHHHHHHH
Q 011137 385 YNILIRYFCDAGEIERGLELFEKMGSG----VCLPN-LDTYNILISSMFVRKKSDDLLVAGKLLIEMVD 448 (493)
Q Consensus 385 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~ 448 (493)
+..+...+...|++++|...++++... +..|+ ...+..+...|...|++++ |.+.+++.++
T Consensus 254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~l~~Al~ 319 (366)
T d1hz4a_ 254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD---AQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHH
Confidence 666778888888888888888887642 33332 4567777788888888888 8888888775
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=1.4e-09 Score=96.21 Aligned_cols=187 Identities=12% Similarity=0.069 Sum_probs=112.2
Q ss_pred ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 011137 222 RTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFD 301 (493)
Q Consensus 222 ~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 301 (493)
..++|..+|++..+...+-+...|...+....+.|+.+.|..+++.+.+........+|...+..+.+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34566666666665433334455666666666677777777777776665333334456666666667777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CC
Q 011137 302 GMVNGGVLPSVATYNAMIQV-LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDE-CE 379 (493)
Q Consensus 302 ~~~~~~~~~~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~ 379 (493)
++.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...|...+..+...|+.+.|..+|++.+... ..
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~ 236 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP 236 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence 76665332 33333333222 233566777777777766652 2245566666777777777777777777766642 22
Q ss_pred C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhc
Q 011137 380 P--NVQTYNILIRYFCDAGEIERGLELFEKMGS 410 (493)
Q Consensus 380 ~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 410 (493)
| ....|...+..-...|+.+.+.++++++.+
T Consensus 237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 234566666666666777777777776654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.25 E-value=2.3e-09 Score=94.84 Aligned_cols=185 Identities=11% Similarity=0.093 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc-chHHHHHHHHHhcCChhHHHHHHHH
Q 011137 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEVLKE 232 (493)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~ 232 (493)
.++|..+|++..+...+.+...|...+..+.+.|+++.|..+|+.+.+..+.+. ..|...+..+.+.|+.+.|.++|++
T Consensus 80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~ 159 (308)
T d2onda1 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 159 (308)
T ss_dssp HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 355566666655443344445555555666666666666666666554433332 2455666666666666666666666
Q ss_pred HHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC-CCC
Q 011137 233 MVDRGLNPNLTTYNIVLKG-YFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG-VLP 310 (493)
Q Consensus 233 m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~ 310 (493)
+.+.+.. +...|...... +...|+.+.|.++|+.+... .+.+...|...+..+.+.|+++.|+.+|++..+.. ..|
T Consensus 160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~ 237 (308)
T d2onda1 160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 237 (308)
T ss_dssp HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence 6554332 22233222222 22345556666666655554 22245555555555555666666666666555432 121
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011137 311 S--VATYNAMIQVLCKKDSVENAILVFEEMVG 340 (493)
Q Consensus 311 ~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 340 (493)
+ ...|...+..-...|+.+.+..+++++.+
T Consensus 238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1 23455555544555555555555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.21 E-value=7.7e-11 Score=106.03 Aligned_cols=261 Identities=8% Similarity=-0.034 Sum_probs=138.5
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHH----------HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCC-
Q 011137 154 ADRAVKIFLSMHEHGCRQSLNSFNTILDL----------LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKR- 222 (493)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 222 (493)
.++|+++++.+.+.. |.+...|+..-.. +...|++++|+.+++......|.+...|..+..++...++
T Consensus 45 ~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~ 123 (334)
T d1dcea1 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEP 123 (334)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSC
T ss_pred cHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccc
Confidence 356666666665532 2233334332222 1222335566666666655555566666666655555443
Q ss_pred -hhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 011137 223 -TNKALEVLKEMVDRGLNPNLTTY-NIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVF 300 (493)
Q Consensus 223 -~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 300 (493)
+++|...+.++.+.... +...+ ......+...|..++|+..++.+.+.+.. +...|..+...+...|++++|...+
T Consensus 124 ~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 56666666666654332 33333 23345555566667777666666665443 5666666666666666665554444
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC
Q 011137 301 DGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEP 380 (493)
Q Consensus 301 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~ 380 (493)
+...+. .|+ .......+...+..+++...+........ ++...+..+...+...|+.++|...+.+..... +.
T Consensus 202 ~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~ 274 (334)
T d1dcea1 202 RLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPEN-KW 274 (334)
T ss_dssp SSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred HHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-ch
Confidence 333221 000 11122233444555566666665555432 233344455555566666777777766666543 22
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCC-HHHHHHHHHH
Q 011137 381 NVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPN-LDTYNILISS 426 (493)
Q Consensus 381 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~li~~ 426 (493)
+...+..+...+...|++++|.+.++++.+. .|+ ...|..+...
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~ 319 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSK 319 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHH
Confidence 4455666666777777777777777777663 443 3344444433
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=8.7e-10 Score=94.95 Aligned_cols=131 Identities=12% Similarity=-0.046 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH
Q 011137 139 KTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC 218 (493)
Q Consensus 139 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 218 (493)
.++..+..+|.+.|++++|++.|++..+.. +.+..+|+.+..++.+.|++++|+..|++.....|.+..++..+..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 355666677777777777777777777653 4566677777777777777777777777776655556667777777777
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 219 LVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 219 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
..|++++|.+.|++..+.... +......+..++.+.+..+.+..+.......
T Consensus 117 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 168 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 777777777777777665432 3444444444444555544444444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=1.5e-10 Score=104.15 Aligned_cols=275 Identities=7% Similarity=-0.050 Sum_probs=198.0
Q ss_pred HHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHH----------hcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 011137 177 NTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWC----------LVKRTNKALEVLKEMVDRGLNPNLTTYN 246 (493)
Q Consensus 177 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 246 (493)
..++......+..++|+++++......|.+...|+..-..+. ..|++++|+.+++...+..++ +...|.
T Consensus 33 ~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~ 111 (334)
T d1dcea1 33 QAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWH 111 (334)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHH
Confidence 334444444445589999999888766666667765444433 334578999999999877554 677777
Q ss_pred HHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011137 247 IVLKGYFRAG--QIEEAWRFFLEMKKRKCEIDVVTYT-TIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC 323 (493)
Q Consensus 247 ~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~ 323 (493)
.+..++...+ ++++|...++.+.+.... +...+. .....+...+..++|+..++++++.+. -+...|+.+..++.
T Consensus 112 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 112 HRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHH
T ss_pred HhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 7777777765 488999999999887443 455544 455777888999999999999988754 37888999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 011137 324 KKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLE 403 (493)
Q Consensus 324 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 403 (493)
+.|++++|...+....+. .|. ...+...+...+..+++...+....... +++...+..++..+...|+.++|..
T Consensus 190 ~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~ 263 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCK 263 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHH
Confidence 999988876655443332 111 1123334455677778888888887764 4455567777888888999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHH
Q 011137 404 LFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKF-TFNRVLNGLL 466 (493)
Q Consensus 404 ~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~l~~~~~ 466 (493)
.+.+..+.. +.+...|..+..++...|+.++ |++.+++.++. .|+.. .|..+...+.
T Consensus 264 ~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~e---A~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 264 ELQELEPEN-KWCLLTIILLMRALDPLLYEKE---TLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHH---HHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHhhC-chHHHHHHHHHHHHHHCCCHHH---HHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 999998753 2256778888899999999998 99999999984 68644 4455544444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=1.4e-09 Score=93.60 Aligned_cols=196 Identities=11% Similarity=-0.035 Sum_probs=94.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFG 288 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 288 (493)
+|..+...|.+.|++++|++.|++..+.... +..+|..+..++.+.|++++|++.|+++.+.... +..++..+..+|.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence 4455555566666666666666666554333 4555666666666666666666666666555332 4445555666666
Q ss_pred ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH----H
Q 011137 289 VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEM----E 364 (493)
Q Consensus 289 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~ 364 (493)
..|++++|.+.|++..+... .+......+..++.+.+..+.+..+.......... ...+. ++..+...... +
T Consensus 117 ~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE--QWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC--STHHH-HHHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchh--hhhhh-HHHHHHHHHHHHHHHH
Confidence 66666666666666655322 13333333333344444444444444443333111 11111 11111111111 1
Q ss_pred HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 011137 365 RALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSG 411 (493)
Q Consensus 365 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 411 (493)
.+...+....... +-...+|..+...|...|++++|.+.|++....
T Consensus 193 ~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 193 RLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1111111111100 111235566777777777777777777777764
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.74 E-value=5.5e-07 Score=78.28 Aligned_cols=237 Identities=11% Similarity=0.034 Sum_probs=136.4
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011137 157 AVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDR 236 (493)
Q Consensus 157 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 236 (493)
+.+++++..+.+ .+....+. ++. -...+++++|.++|.+ ....|...|++++|.+.|.++.+.
T Consensus 4 ~~~~l~~aek~~-~~~~~~~~-~~~-~~~~~~~~~Aa~~y~~--------------aa~~y~~~~~~~~A~~~y~kA~~~ 66 (290)
T d1qqea_ 4 PVELLKRAEKKG-VPSSGFMK-LFS-GSDSYKFEEAADLCVQ--------------AATIYRLRKELNLAGDSFLKAADY 66 (290)
T ss_dssp HHHHHHHHHHHS-SCCCTHHH-HHS-CCSHHHHHHHHHHHHH--------------HHHHHHHTTCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CcchhHHH-Hhc-CCccccHHHHHHHHHH--------------HHHHHHHCcCHHHHHHHHHHHHHH
Confidence 456666665543 23332222 111 0112346677666554 456788888999999988887642
Q ss_pred ----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHH
Q 011137 237 ----GLNP-NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKC-----EIDVVTYTTIVHGFG-VVGEIKRARNVFDGMVN 305 (493)
Q Consensus 237 ----g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~ 305 (493)
+-.+ -..+|..+..+|.+.|++++|.+.++....... .....++..+...|. ..|++++|++.|++..+
T Consensus 67 ~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~ 146 (290)
T d1qqea_ 67 QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGE 146 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHH
Confidence 1111 235778888888888999988888887655311 111344555566663 45888888888877643
Q ss_pred C----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCh------hhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 011137 306 G----GVLP-SVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNS------TTYNVVIRGLCHTGEMERALEFVGRMK 374 (493)
Q Consensus 306 ~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~~~ 374 (493)
. +..+ -..++..+...+...|++++|...|+++......... ..+...+..+...|+++.|...+++..
T Consensus 147 l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 1 1111 1235666777788888888888888777665222111 112333445556777888887777776
Q ss_pred hCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHhc
Q 011137 375 DDECE-PN---VQTYNILIRYFCD--AGEIERGLELFEKMGS 410 (493)
Q Consensus 375 ~~~~~-~~---~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~ 410 (493)
+.... ++ ......++.++.. .+.+++|+..|+++.+
T Consensus 227 ~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 227 SEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR 268 (290)
T ss_dssp CC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 55211 11 2234455555543 2346666666665544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.71 E-value=6.1e-07 Score=72.46 Aligned_cols=120 Identities=13% Similarity=0.070 Sum_probs=59.7
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
+...|+++.|++.|+.+ .+++..+|..+..+|...|++++|++.|++.++.... +...|..+..++.+.|++++|.
T Consensus 15 ~~~~~d~~~Al~~~~~i---~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 15 AADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHTTCHHHHHHHHHTS---SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHCCCHHHHHHHHHhc---CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHH
Confidence 44455555555554432 2234444555555555555555555555555544332 3445555555555555555555
Q ss_pred HHHHHHHHCCCC--------------C-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHC
Q 011137 263 RFFLEMKKRKCE--------------I-DVVTYTTIVHGFGVVGEIKRARNVFDGMVNG 306 (493)
Q Consensus 263 ~~~~~~~~~~~~--------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 306 (493)
+.|++....... . ...++..+..++.+.|++++|.+.|+...+.
T Consensus 91 ~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 91 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 555554432100 0 0233444555566666666666666665554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=8e-07 Score=71.73 Aligned_cols=125 Identities=16% Similarity=0.055 Sum_probs=84.8
Q ss_pred HHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCH
Q 011137 110 IDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKV 189 (493)
Q Consensus 110 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 189 (493)
...+...|+++.|++.|+++ .+++..+|..+..+|...|++++|++.|++.++.+ +.....|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 34456778888888877654 23567777778888888888888888888887765 45667777788888888888
Q ss_pred HHHHHHHHHhhcCCCCC----------------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 011137 190 EKAYNLFKVFRGKFKAD----------------VISYNVIANGWCLVKRTNKALEVLKEMVDRGLN 239 (493)
Q Consensus 190 ~~A~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 239 (493)
++|...|++.....+.+ ..++..+..++.+.|++++|.+.+....+....
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 88887777654321111 123445566666777777777777666655443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=5.1e-07 Score=78.51 Aligned_cols=61 Identities=10% Similarity=0.015 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 105 SFDHAIDLAARLRDYRTVWTLVHRMKSL----SLGP-TQKTFAIIAERYVSAGKADRAVKIFLSMH 165 (493)
Q Consensus 105 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 165 (493)
.|......|...|++++|.+.|.+.... +-.+ -..+|..+..+|.+.|++++|++.++...
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~ 104 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAI 104 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhh
Confidence 3555566677777777777777765442 1111 12456666666777777777766666554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.64 E-value=7.3e-05 Score=63.40 Aligned_cols=224 Identities=8% Similarity=-0.001 Sum_probs=133.1
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 011137 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR----AGQIEEAWRFFLEMKKRKCEIDVVTYTT 282 (493)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 282 (493)
+..+..|...+...+++++|+++|++..+.| +...+..|...|.. ..+...|...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 3445556666666677777777777776655 44555555555554 446677777777666654 2233333
Q ss_pred HHHHHh----ccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCChhhHHHHH
Q 011137 283 IVHGFG----VVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLC----KKDSVENAILVFEEMVGKGYMPNSTTYNVVI 354 (493)
Q Consensus 283 li~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 354 (493)
+...+. ...+.+.|...++...+.|. ......+...+. .......+...+......+ +...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhh
Confidence 333332 24566777777777766543 222222322222 2344566666666655542 455566666
Q ss_pred HHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Q 011137 355 RGLCH----TGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSGVCLPNLDTYNILISS 426 (493)
Q Consensus 355 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 426 (493)
..+.. ..+...+..+++...+.| +......+...|.. ..++++|...|++..+.| ++..+..|...
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 66654 455667777777777654 55555566666654 457888888888887765 45566666666
Q ss_pred Hhc----cCCcccHHHHHHHHHHHHHCCC
Q 011137 427 MFV----RKKSDDLLVAGKLLIEMVDRGF 451 (493)
Q Consensus 427 ~~~----~~~~~~~~~A~~~~~~m~~~g~ 451 (493)
|.. ..+.++ |.++|++..+.|.
T Consensus 224 y~~G~g~~~n~~~---A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 224 QYNGEGVTRNEKQ---AIENFKKGCKLGA 249 (265)
T ss_dssp HHTTSSSSCCSTT---HHHHHHHHHHHTC
T ss_pred HHcCCCCccCHHH---HHHHHHHHHHCcC
Confidence 654 235666 8888888877663
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=7.2e-07 Score=65.42 Aligned_cols=90 Identities=14% Similarity=0.072 Sum_probs=45.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhH
Q 011137 146 ERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNK 225 (493)
Q Consensus 146 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 225 (493)
..+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++......+.+...|..+..++...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence 34444555555555555554432 33444455555555555555555555555444444444555555555555555555
Q ss_pred HHHHHHHHHhC
Q 011137 226 ALEVLKEMVDR 236 (493)
Q Consensus 226 A~~~~~~m~~~ 236 (493)
|+..|++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=9.5e-07 Score=64.74 Aligned_cols=90 Identities=16% Similarity=0.016 Sum_probs=45.8
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
..+.+.|++++|+..|++.....|.+...|..+..+|.+.|++++|+..+++..+.+.. +...|..+..++...|++++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHH
Confidence 34444555555555555554444444555555555555555555555555555544332 44445555555555555555
Q ss_pred HHHHHHHHHHC
Q 011137 261 AWRFFLEMKKR 271 (493)
Q Consensus 261 a~~~~~~~~~~ 271 (493)
|+..++...+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 55555555543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.58 E-value=8.8e-07 Score=69.13 Aligned_cols=92 Identities=14% Similarity=0.013 Sum_probs=59.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChh
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTN 224 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 224 (493)
...|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...|++..+..+.+..+|..++.++...|+++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~ 95 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 95 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHH
Confidence 445666677777777776666654 4456666666666666777777777666666555556666666666666677777
Q ss_pred HHHHHHHHHHhCC
Q 011137 225 KALEVLKEMVDRG 237 (493)
Q Consensus 225 ~A~~~~~~m~~~g 237 (493)
+|...+++.....
T Consensus 96 eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 96 AALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcC
Confidence 7766666666543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=1.1e-06 Score=68.45 Aligned_cols=90 Identities=14% Similarity=0.098 Sum_probs=52.5
Q ss_pred HHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 011137 181 DLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEE 260 (493)
Q Consensus 181 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 260 (493)
..|.+.|++++|+..|++.....|.+...|..+..+|...|++++|+..|++.++.... +..+|..++.++...|++++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCHHH
Confidence 44555666666666666555555555556666666666666666666666666554332 44555556666666666666
Q ss_pred HHHHHHHHHHC
Q 011137 261 AWRFFLEMKKR 271 (493)
Q Consensus 261 a~~~~~~~~~~ 271 (493)
|...+++....
T Consensus 97 A~~~~~~a~~~ 107 (159)
T d1a17a_ 97 ALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 66666665554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=9e-07 Score=72.15 Aligned_cols=99 Identities=10% Similarity=-0.012 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHH
Q 011137 136 PTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIAN 215 (493)
Q Consensus 136 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 215 (493)
|+...+......|.+.|++++|+..|++..... +.+...|+.+..+|.+.|++++|+..|+......|.+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 455555566666666666666666666666543 4455666666666666666666666666666555555556666666
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 011137 216 GWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~ 235 (493)
+|...|++++|+..|++..+
T Consensus 81 ~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 66666666666666666543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.49 E-value=0.00024 Score=60.07 Aligned_cols=230 Identities=9% Similarity=0.014 Sum_probs=164.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 011137 241 NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGV----VGEIKRARNVFDGMVNGGVLPSVATYN 316 (493)
Q Consensus 241 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~ 316 (493)
|+..+..+...+.+.+++++|+++|++..+.| +...+..|...|.. ..+...|...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45567778888889999999999999998876 56667677777765 668999999999988864 334444
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 011137 317 AMIQVLCK----KDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLC----HTGEMERALEFVGRMKDDECEPNVQTYNIL 388 (493)
Q Consensus 317 ~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 388 (493)
.+...+.. ..+.+.|...++...+.|.. .....+...+. .......+...+......+ +...+..|
T Consensus 75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L 148 (265)
T d1ouva_ 75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 148 (265)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred ccccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhh
Confidence 45444443 56788999999998887632 23333333333 2456777888888877643 66778888
Q ss_pred HHHHHh----cCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhc-cCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 011137 389 IRYFCD----AGEIERGLELFEKMGSGVCLPNLDTYNILISSMFV-RKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLN 463 (493)
Q Consensus 389 ~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~-~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 463 (493)
...|.. ..+...+...++...+.| +......+...|.. .|-..+..+|+.+|.+..+.| +...+..|..
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~ 222 (265)
T d1ouva_ 149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 222 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence 888875 457888888888888764 66666666665554 222233444999999999987 4566666666
Q ss_pred HHHH----cCCHHHHHHHHHHHHhcCCCC
Q 011137 464 GLLL----IGNQGLAKEILRLQSRCGRLP 488 (493)
Q Consensus 464 ~~~~----~g~~~~a~~~~~~~~~~g~~~ 488 (493)
.|.. ..+.++|.+++++..+.|..+
T Consensus 223 ~y~~G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 223 MQYNGEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence 6654 347899999999998888643
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.43 E-value=1.4e-06 Score=71.04 Aligned_cols=97 Identities=10% Similarity=-0.041 Sum_probs=50.2
Q ss_pred cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 011137 207 VISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHG 286 (493)
Q Consensus 207 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 286 (493)
...+......+.+.|++++|+..|++.++..+. +...|..+..+|.+.|++++|+..|+...+.... +..+|..+..+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg~~ 81 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 333444445555555555555555555544322 4445555555555555555555555555544222 44455555555
Q ss_pred HhccCCHHHHHHHHHHHHH
Q 011137 287 FGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~~ 305 (493)
|...|++++|+..|++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.35 E-value=1.7e-06 Score=62.74 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=34.0
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
+.+.|++++|+..|++..+.. +.+...|..+..++.+.|++++|+..|++.....|.+..+|..+...|...|++++|+
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~~~~A~ 104 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAAL 104 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCCHHHHH
Confidence 333444444444444443332 2233344444444444444444444444433333333344444444444444444444
Q ss_pred HHHHH
Q 011137 228 EVLKE 232 (493)
Q Consensus 228 ~~~~~ 232 (493)
+.+++
T Consensus 105 ~~l~~ 109 (112)
T d1hxia_ 105 ASLRA 109 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.35 E-value=0.00064 Score=58.87 Aligned_cols=131 Identities=11% Similarity=0.076 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhc
Q 011137 141 FAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLV 220 (493)
Q Consensus 141 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 220 (493)
...+...|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+...+.+.
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~-----~~~~~k~~~~~l~~~ 82 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFACVDG 82 (336)
T ss_dssp ------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT-----CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC-----CHHHHHHHHHHHHhC
Confidence 33444455555555555555543321 3344455555555555555544332 344555555555544
Q ss_pred CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 011137 221 KRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVG 291 (493)
Q Consensus 221 ~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 291 (493)
....-| .+.......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 83 ~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 83 KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 443222 1112222234444445555555666666666666555432 2234455555555555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.34 E-value=2.4e-06 Score=61.91 Aligned_cols=88 Identities=5% Similarity=-0.088 Sum_probs=42.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 011137 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGE 292 (493)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 292 (493)
+...+.+.|++++|+..|++....... +..+|..+..++.+.|++++|+..+++..+.... +..++..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCC
Confidence 344444455555555555555443322 3444555555555555555555555554444222 44444445555555555
Q ss_pred HHHHHHHHHH
Q 011137 293 IKRARNVFDG 302 (493)
Q Consensus 293 ~~~A~~~~~~ 302 (493)
+++|++.+++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=3.4e-06 Score=61.94 Aligned_cols=20 Identities=25% Similarity=0.109 Sum_probs=8.0
Q ss_pred HHHHcCCHHHHHHHHHHHHh
Q 011137 147 RYVSAGKADRAVKIFLSMHE 166 (493)
Q Consensus 147 ~~~~~g~~~~a~~~~~~~~~ 166 (493)
.+...+++++|.+.|+....
T Consensus 8 ~~~~~~~l~~Ae~~Y~~aL~ 27 (122)
T d1nzna_ 8 ELVSVEDLLKFEKKFQSEKA 27 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHh
Confidence 33333444444444444333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=3.8e-06 Score=61.67 Aligned_cols=99 Identities=14% Similarity=0.080 Sum_probs=51.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhcCCCCCC-HHHHHHHHHHH
Q 011137 352 VVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGE---IERGLELFEKMGSGVCLPN-LDTYNILISSM 427 (493)
Q Consensus 352 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~ 427 (493)
.++..+...+++++|.+.|+.....+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34445555555666666666555543 3455555555555554332 3345555655555322222 22445555555
Q ss_pred hccCCcccHHHHHHHHHHHHHCCCCCCHH
Q 011137 428 FVRKKSDDLLVAGKLLIEMVDRGFMPRKF 456 (493)
Q Consensus 428 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 456 (493)
...|++++ |.+.|+++++ +.|+..
T Consensus 83 ~~~g~~~~---A~~~~~~aL~--~~P~~~ 106 (122)
T d1nzna_ 83 YRLKEYEK---ALKYVRGLLQ--TEPQNN 106 (122)
T ss_dssp HHTTCHHH---HHHHHHHHHH--HCTTCH
T ss_pred HHHhhhHH---HHHHHHHHHH--hCcCCH
Confidence 56666655 5566666555 245433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=3.6e-05 Score=60.30 Aligned_cols=61 Identities=13% Similarity=-0.002 Sum_probs=31.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
|+.+..+|.+.|++++|+..+++.++..+. +..++..+..++...|++++|+..|+...+.
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 444455555555555555555555544322 4445555555555555555555555555544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=6.2e-05 Score=58.89 Aligned_cols=77 Identities=9% Similarity=-0.120 Sum_probs=50.6
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGY 252 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 252 (493)
+|+.+..+|.+.|++++|+..++......|.++.+|..+..+|...|++++|+..|++..+..+. +......+..+.
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~ 140 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence 45566667777777777777777766655667777777777777777777777777777665332 444444443333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=1.1e-06 Score=82.61 Aligned_cols=113 Identities=8% Similarity=-0.076 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 011137 277 VVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRG 356 (493)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 356 (493)
...+..+...+.+.|+.+.|...++...... ...++..+...+...|++++|...|++..+.... +...|+.+...
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~ 195 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAIL 195 (497)
T ss_dssp -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHH
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHH
Confidence 3444555555556666666655555443311 1234555556666666666666666666655322 44566666666
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 011137 357 LCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCD 394 (493)
Q Consensus 357 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 394 (493)
+...|+..+|...|.+.+... +|...++..|...+.+
T Consensus 196 ~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 196 ASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence 666666666666666666553 4455556666555543
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=0.0032 Score=54.32 Aligned_cols=129 Identities=13% Similarity=0.145 Sum_probs=76.3
Q ss_pred HHHHHHHHhh--ChHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 011137 72 VDQIIKRLWN--HALKALHFFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYV 149 (493)
Q Consensus 72 ~~~~l~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 149 (493)
+..|...+.. .++.|..++..+. -|..++..+.+.++++.|.+++.+. -+..+|..+...+.
T Consensus 17 ~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~ 80 (336)
T d1b89a_ 17 IQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACV 80 (336)
T ss_dssp ------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHH
Confidence 3344444432 2356666665432 3677777777788888777766543 25667777777777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcC
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVK 221 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 221 (493)
+......+. +.......+......++..|-..|.+++...+++........+...++.++..|++.+
T Consensus 81 ~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 81 DGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred hCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC
Confidence 766654432 2222223455555667777777888888887777665544556667777777777754
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=1.9e-06 Score=80.91 Aligned_cols=137 Identities=10% Similarity=-0.037 Sum_probs=81.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 011137 290 VGEIKRARNVFDGMVNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEF 369 (493)
Q Consensus 290 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 369 (493)
.+.++.|+..+....+.. .++...+..+...+.+.|+.++|...+....... ...++..+...+...|++++|...
T Consensus 99 ~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~ 174 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESY 174 (497)
T ss_dssp HHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHH
Confidence 344555555554443322 2345567778888889999999988877665431 234677788889999999999999
Q ss_pred HHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCC
Q 011137 370 VGRMKDDECEPNVQTYNILIRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKK 432 (493)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~ 432 (493)
|+++.+.. +-+...|+.|...+...|+..+|...|.+.... .+|-..++..|...+.+..+
T Consensus 175 y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~~~~~~~~~ 235 (497)
T d1ya0a1 175 YRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSKALE 235 (497)
T ss_dssp HHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHhhh
Confidence 99999874 556789999999999999999999999999886 34678888888887765443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.98 E-value=5.6e-05 Score=59.11 Aligned_cols=62 Identities=10% Similarity=-0.010 Sum_probs=28.9
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
.|..+..++.+.|++++|+..+++.++.... +..+|..+..++.+.|++++|++.|+...+.
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3444444444444555554444444443322 3344444444444555555555555444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.97 E-value=0.00015 Score=55.39 Aligned_cols=62 Identities=16% Similarity=0.073 Sum_probs=31.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 209 SYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 209 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
+|+.+..+|.+.|++++|++.+++.++..+. +..+|..+..++...|++++|...|+...+.
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3444455555555555555555555443322 4445555555555555555555555555544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.96 E-value=6e-05 Score=55.72 Aligned_cols=91 Identities=15% Similarity=0.146 Sum_probs=40.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C-----HHHHHHHHHH
Q 011137 213 IANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEI-D-----VVTYTTIVHG 286 (493)
Q Consensus 213 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-----~~~~~~li~~ 286 (493)
+...+.+.|++++|++.|++.++.+.. +...+..+..+|.+.|++++|++.++++.+..... . ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555444322 34444445555555555555555555444321100 0 1233334444
Q ss_pred HhccCCHHHHHHHHHHHH
Q 011137 287 FGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 287 ~~~~g~~~~A~~~~~~~~ 304 (493)
+...+++++|++.|++..
T Consensus 89 ~~~~~~~~~A~~~~~kal 106 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSL 106 (128)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 444445555555554443
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=4.8e-05 Score=56.31 Aligned_cols=92 Identities=11% Similarity=0.109 Sum_probs=46.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCc-------chHHHHHH
Q 011137 143 IIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADV-------ISYNVIAN 215 (493)
Q Consensus 143 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~ 215 (493)
.+...+...|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|+..+++.....+.+. .+|..+..
T Consensus 9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~ 87 (128)
T d1elra_ 9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence 34445555566666666665555543 33455555555556666666666555555433211111 13334444
Q ss_pred HHHhcCChhHHHHHHHHHHh
Q 011137 216 GWCLVKRTNKALEVLKEMVD 235 (493)
Q Consensus 216 ~~~~~~~~~~A~~~~~~m~~ 235 (493)
.+...+++++|++.|++...
T Consensus 88 ~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 88 SYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHh
Confidence 45555555555555555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.89 E-value=0.00012 Score=57.16 Aligned_cols=61 Identities=13% Similarity=0.036 Sum_probs=28.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 011137 210 YNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR 271 (493)
Q Consensus 210 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 271 (493)
|+.+..+|.+.|++++|+..+++..+.... +..+|..+..++...|++++|...|+.+.+.
T Consensus 67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 67 FLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 333444444444455554444444443222 3444444444555555555555555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.88 E-value=0.00029 Score=53.80 Aligned_cols=74 Identities=18% Similarity=0.003 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 011137 174 NSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIV 248 (493)
Q Consensus 174 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 248 (493)
.+|+.+..+|.+.|++++|++.++......|.+..+|..+..++...|++++|+..|++..+..+. +..+...+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 356667778888888888888888777666777778888888888888888888888888765433 34444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.83 E-value=0.00015 Score=57.03 Aligned_cols=58 Identities=7% Similarity=0.064 Sum_probs=28.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 011137 176 FNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEM 233 (493)
Q Consensus 176 ~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 233 (493)
+..+...+.+.|++++|+..++++....|.+...|..++.++...|+.++|++.|+++
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3344444444555555555544444444444444555555555555555555444443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.82 E-value=0.00011 Score=57.26 Aligned_cols=131 Identities=12% Similarity=0.020 Sum_probs=83.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHc
Q 011137 106 FDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCK 185 (493)
Q Consensus 106 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 185 (493)
+......+.+.|+++.|+..|.+..+. .............. .. .+.....+..+..++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~-------~~-~~~~~~~~~nla~~~~~ 89 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA-------KL-QPVALSCVLNIGACKLK 89 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG-------GG-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH-------Hh-ChhhHHHHHHHHHHHHh
Confidence 344455667788888888888776531 00000111111110 00 02244567777788888
Q ss_pred cCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011137 186 EKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQ 257 (493)
Q Consensus 186 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 257 (493)
.|++++|+..++...+..|.+..+|..+..++...|++++|++.|++..+.... +......+..+..+...
T Consensus 90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~-n~~~~~~l~~~~~~l~~ 160 (169)
T d1ihga1 90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE-DKAIQAELLKVKQKIKA 160 (169)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 888888888888888777778888888888888888888888888888876433 55555555555444333
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.81 E-value=0.00046 Score=53.55 Aligned_cols=81 Identities=12% Similarity=0.007 Sum_probs=55.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011137 175 SFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFR 254 (493)
Q Consensus 175 ~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 254 (493)
+|+.+..+|.+.|++++|+..++......|.+..+|..+..++...|++++|...|+++.+..+. +......+..+..+
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 45566777777888888888887777666777777888888888888888888888887765432 44444444444444
Q ss_pred cC
Q 011137 255 AG 256 (493)
Q Consensus 255 ~g 256 (493)
.+
T Consensus 145 ~~ 146 (168)
T d1kt1a1 145 AK 146 (168)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.76 E-value=0.00065 Score=53.14 Aligned_cols=71 Identities=8% Similarity=0.095 Sum_probs=42.0
Q ss_pred chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 011137 208 ISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKK-----RKCEIDVVT 279 (493)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 279 (493)
..+..+...+.+.|++++|+..++++.+.... +...|..++.++.+.|+.++|++.|+++.+ .|+.|...+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 34555666666666666666666666655433 556666666666666666666666665533 355555443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.72 E-value=2.2e-05 Score=66.17 Aligned_cols=50 Identities=14% Similarity=0.284 Sum_probs=24.1
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhc
Q 011137 151 AGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRG 201 (493)
Q Consensus 151 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 201 (493)
.|++++|+..+++.++.. +.+...+..+...|+..|++++|...|+...+
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555555555544432 33444445555555555555555555544443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.64 E-value=0.0001 Score=55.73 Aligned_cols=69 Identities=7% Similarity=-0.086 Sum_probs=33.1
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCC----------HHHHHHHHHHhhcCCCCCcchHHHHHHHHHh
Q 011137 150 SAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKK----------VEKAYNLFKVFRGKFKADVISYNVIANGWCL 219 (493)
Q Consensus 150 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 219 (493)
+.+.+++|++.|+...+.. |.+..++..+..++...++ +++|+..|++..+..|.+..+|..+..+|..
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3444556666666555543 4445555555555543322 3344444444444344444455555444443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.64 E-value=3.9e-05 Score=64.59 Aligned_cols=122 Identities=10% Similarity=-0.077 Sum_probs=69.1
Q ss_pred HHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 011137 183 LCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKALEVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAW 262 (493)
Q Consensus 183 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 262 (493)
..+.|++++|+..+++..+..|.|...+..+...++..|++++|.+.++...+.... +...+..+...+...+..+++.
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~ 84 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA 84 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence 345678888888887777777777788888888888888888888888887765322 2334433433333222222221
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 011137 263 RFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVN 305 (493)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 305 (493)
.-.......+.+++...+......+...|+.++|.+.++++.+
T Consensus 85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 1111100111122233333444556666777777777766655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.56 E-value=0.00021 Score=53.97 Aligned_cols=76 Identities=11% Similarity=0.094 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccC
Q 011137 363 MERALEFVGRMKDDECEPNVQTYNILIRYFCDAG-----------EIERGLELFEKMGSGVCLPNLDTYNILISSMFVRK 431 (493)
Q Consensus 363 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 431 (493)
+++|+..|+++++.. +-+..+|..+..+|...| .+++|.+.|++..+ +.|+...|..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~--l~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc--cCCCHHHHHHHHHHH----
Confidence 345666666665543 334556666666555443 24566666666665 345544444444333
Q ss_pred CcccHHHHHHHHHHHHHCC
Q 011137 432 KSDDLLVAGKLLIEMVDRG 450 (493)
Q Consensus 432 ~~~~~~~A~~~~~~m~~~g 450 (493)
.. |.+++.+..+.|
T Consensus 130 --~k---a~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 --AK---APQLHAEAYKQG 143 (145)
T ss_dssp --HT---HHHHHHHHHHSS
T ss_pred --HH---HHHHHHHHHHHh
Confidence 12 555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.18 E-value=0.0031 Score=47.94 Aligned_cols=90 Identities=10% Similarity=0.024 Sum_probs=48.8
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC--
Q 011137 215 NGWCLVKRTNKALEVLKEMVDRGLN-P----------NLTTYNIVLKGYFRAGQIEEAWRFFLEMKKR-----KCEID-- 276 (493)
Q Consensus 215 ~~~~~~~~~~~A~~~~~~m~~~g~~-p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-- 276 (493)
..+...|++++|+..|++.++.... | ....|+.+..+|.+.|++++|.+.+++..+. ...++
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556666666666666532110 1 1245666677777777777777666665542 01111
Q ss_pred ---HHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 011137 277 ---VVTYTTIVHGFGVVGEIKRARNVFDGMV 304 (493)
Q Consensus 277 ---~~~~~~li~~~~~~g~~~~A~~~~~~~~ 304 (493)
...+..+..+|...|++++|+..|++..
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1234445566666666666666666554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.16 E-value=0.0011 Score=50.52 Aligned_cols=54 Identities=17% Similarity=0.107 Sum_probs=27.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCC-CCC----------HHHHHHHHHHHHccCCHHHHHHHHHH
Q 011137 145 AERYVSAGKADRAVKIFLSMHEHGC-RQS----------LNSFNTILDLLCKEKKVEKAYNLFKV 198 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----------~~~~~~ll~~~~~~g~~~~A~~~~~~ 198 (493)
...+...|++++|++.|++.++... .|+ ...|+.+..+|...|++++|...+++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~ 80 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADK 80 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence 3345556677777777766654210 011 23445555555555555555554443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.86 E-value=0.0021 Score=44.05 Aligned_cols=19 Identities=0% Similarity=-0.202 Sum_probs=7.4
Q ss_pred HHHHHHcCCHHHHHHHHHH
Q 011137 145 AERYVSAGKADRAVKIFLS 163 (493)
Q Consensus 145 ~~~~~~~g~~~~a~~~~~~ 163 (493)
...+.+.|++++|+..|++
T Consensus 12 G~~~~~~g~y~~A~~~~~~ 30 (95)
T d1tjca_ 12 GKVAYTEADYYHTELWMEQ 30 (95)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 3333333444444333333
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.0043 Score=42.40 Aligned_cols=66 Identities=11% Similarity=-0.005 Sum_probs=37.3
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhCC-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Q 011137 102 SPSSFDHAIDLAARLRDYRTVWTLVHRMKSLS-----LGPT-QKTFAIIAERYVSAGKADRAVKIFLSMHEH 167 (493)
Q Consensus 102 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 167 (493)
+++.+-.+...+.+.|+++.|...|++..+.. ..++ ..++..+..++.+.|++++|+..++++++.
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 44445556666666666666666666654321 1111 345556666666666666666666666554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.49 E-value=0.053 Score=39.35 Aligned_cols=47 Identities=13% Similarity=0.101 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhcC
Q 011137 362 EMERALEFVGRMKDDECEPNVQTYNILIRYFCD----AGEIERGLELFEKMGSG 411 (493)
Q Consensus 362 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 411 (493)
+.++|.++|++..+.| ++.....|...|.. ..+.++|.++|++..+.
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 3444555555544443 22333333333332 23444455555444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.27 E-value=0.05 Score=39.51 Aligned_cols=45 Identities=11% Similarity=-0.006 Sum_probs=21.1
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCC
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLL----IGNQGLAKEILRLQSRCGR 486 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~ 486 (493)
|+++|++..+.| +......|...|.. ..+.++|.+++++..+.|.
T Consensus 78 A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 78 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence 555555555544 22233333333333 2355555555555555554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.27 E-value=0.097 Score=36.53 Aligned_cols=141 Identities=11% Similarity=0.133 Sum_probs=91.2
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 011137 322 LCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQTYNILIRYFCDAGEIERG 401 (493)
Q Consensus 322 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 401 (493)
+.-.|.+++..+++.+.... .+..-||.+|.-....-+-+...+.++.+-+. .| ...++++...
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHH
Confidence 34456777777777666654 24556666666555555555555555544322 11 0123444444
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 402 LELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 402 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
...+-.+-. +...++..++.+...|+-+. -.++.+++.+.+ +|+......+..+|.+.|...++.+++...
T Consensus 76 v~C~~~~n~-----~se~vdlALd~lv~~~kkd~---Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 76 VECGVINNT-----LNEHVNKALDILVIQGKRDK---LEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp HHHHHHTTC-----CCHHHHHHHHHHHHTTCHHH---HHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcc-----hHHHHHHHHHHHHHhccHHH---HHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 444433322 44556667778888888887 667888877754 888899999999999999999999999998
Q ss_pred HhcCCC
Q 011137 482 SRCGRL 487 (493)
Q Consensus 482 ~~~g~~ 487 (493)
-+.|..
T Consensus 147 Ce~G~K 152 (161)
T d1wy6a1 147 CKKGEK 152 (161)
T ss_dssp HHTTCH
T ss_pred HHHhHH
Confidence 888864
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.44 Score=42.70 Aligned_cols=351 Identities=10% Similarity=-0.001 Sum_probs=181.5
Q ss_pred HHHHhhcCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 011137 89 FFNILSYHPTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSAGKADRAVKIFLSMHEHG 168 (493)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 168 (493)
+-..+...|+.|.....-...+..+.+.++++.....+. ..+.+...-.....+....|+.+.|...+..+-..|
T Consensus 58 i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~ 132 (450)
T d1qsaa1 58 VTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (450)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence 334455555544444445555677788888776554331 223456555567777788888888887777665544
Q ss_pred CCCCHHHHHHHHHHHHccCCH------------------HHHHHHHHHhhcCCCCCc-chHHHHHHHHHhcCChhHHHHH
Q 011137 169 CRQSLNSFNTILDLLCKEKKV------------------EKAYNLFKVFRGKFKADV-ISYNVIANGWCLVKRTNKALEV 229 (493)
Q Consensus 169 ~~~~~~~~~~ll~~~~~~g~~------------------~~A~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~ 229 (493)
......+..+...+.+.|.+ ..|..+...+ +++. ......+..... ...+...
T Consensus 133 -~~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l----~~~~~~~~~a~~~l~~~---p~~~~~~ 204 (450)
T d1qsaa1 133 -KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQM----PADYQTIASAIISLANN---PNTVLTF 204 (450)
T ss_dssp -SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTC----CGGGHHHHHHHHHHHHC---GGGHHHH
T ss_pred -CCCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhC----ChhHHHHHHHHHHHHhC---hHhHHHH
Confidence 22334445555544444433 3332222211 1111 122222222211 1111111
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHhccCCHHHHHHHHHHH
Q 011137 230 LKEMVDRGLNPNLTTYNIVLKGYFR--AGQIEEAWRFFLEMKKRKCEIDVVTYTT----IVHGFGVVGEIKRARNVFDGM 303 (493)
Q Consensus 230 ~~~m~~~g~~p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~~~~~ 303 (493)
. ... ..+......+..++.+ ..+.+.+..++......... +..-+.. +.......+..+.+...+...
T Consensus 205 ~---~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~ 278 (450)
T d1qsaa1 205 A---RTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA 278 (450)
T ss_dssp H---HHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred H---hcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhh
Confidence 1 111 1122222223333322 24677777777776654322 2222222 222334456667777777766
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH
Q 011137 304 VNGGVLPSVATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPNVQ 383 (493)
Q Consensus 304 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 383 (493)
...+. +.......+......+++..+...+..|.... .....-.--+.+++...|+.+.|...|..+... ++
T Consensus 279 ~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~-- 350 (450)
T d1qsaa1 279 IMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG-- 350 (450)
T ss_dssp HHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--
T ss_pred ccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--
Confidence 66533 34444445555566778888888777765431 123344455667777888888888888877642 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhcCCCC--CC-HHH---HHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCCHHH
Q 011137 384 TYNILIRYFCDAGEIERGLELFEKMGSGVCL--PN-LDT---YNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPRKFT 457 (493)
Q Consensus 384 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~-~~~---~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 457 (493)
|..++.+- +.|..- .+.....+ +. ... -..-+..+...|+..+ |...|..+.+. .+...
T Consensus 351 -fYG~LAa~-~Lg~~~-------~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~---A~~e~~~l~~~---~~~~~ 415 (450)
T d1qsaa1 351 -FYPMVAAQ-RIGEEY-------ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNT---ARSEWANLVKS---KSKTE 415 (450)
T ss_dssp -HHHHHHHH-HTTCCC-------CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHH---HHHHHHHHHTT---CCHHH
T ss_pred -hHHHHHHH-HcCCCC-------CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchH---HHHHHHHHHhC---CCHHH
Confidence 22222221 122100 00000000 00 000 1122445667788888 88888888764 35566
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q 011137 458 FNRVLNGLLLIGNQGLAKEILRLQ 481 (493)
Q Consensus 458 ~~~l~~~~~~~g~~~~a~~~~~~~ 481 (493)
...+.....+.|.++.|+......
T Consensus 416 ~~~la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 416 QAQLARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCChhHHHHHHHHH
Confidence 677788888999999998776554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.11 E-value=0.31 Score=33.96 Aligned_cols=141 Identities=16% Similarity=0.162 Sum_probs=86.7
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHhcCChhHHH
Q 011137 148 YVSAGKADRAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCLVKRTNKAL 227 (493)
Q Consensus 148 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 227 (493)
+.-.|..++..+++.+.... .+..-||-++--....-+-+...++++.+.+.+..+ .+++.....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls------------~C~Nlk~vv 76 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD------------KCQNLKSVV 76 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG------------GCSCTHHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch------------hhhcHHHHH
Confidence 44567788888888877763 355566666666666666666777777666543222 223333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCC
Q 011137 228 EVLKEMVDRGLNPNLTTYNIVLKGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGG 307 (493)
Q Consensus 228 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 307 (493)
..+-.+- -+...+...++...+.|+-+.-.++++.+.+. -.+++...-.+..+|.+.|+..++-+++.+.-+.|
T Consensus 77 ~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 77 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 3332221 13345556667777777777777777776663 45566667777777777777777777777777666
Q ss_pred CC
Q 011137 308 VL 309 (493)
Q Consensus 308 ~~ 309 (493)
.+
T Consensus 151 ~K 152 (161)
T d1wy6a1 151 EK 152 (161)
T ss_dssp CH
T ss_pred HH
Confidence 53
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.62 E-value=0.11 Score=36.48 Aligned_cols=67 Identities=12% Similarity=0.130 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 011137 416 NLDTYNILISSMFVRKKSDDLLVAGKLLIEMVDRGFMPR-KFTFNRVLNGLLLIGNQGLAKEILRLQSR 483 (493)
Q Consensus 416 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 483 (493)
...+--....++++..+.++..+++.++++..+.+ ..+ ...+..|.-+|.+.|++++|.++++.+.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444444444444444444444555555544321 112 23333444445555555555555554444
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.12 E-value=3.6 Score=36.31 Aligned_cols=316 Identities=7% Similarity=-0.025 Sum_probs=176.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHc------------------CCHHHHH
Q 011137 97 PTYAHSPSSFDHAIDLAARLRDYRTVWTLVHRMKSLSLGPTQKTFAIIAERYVSA------------------GKADRAV 158 (493)
Q Consensus 97 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------------g~~~~a~ 158 (493)
+..+.+...-+....+....|+...|...+..+-..|. ..+..+..+...+... |+...|.
T Consensus 96 ~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~ 174 (450)
T d1qsaa1 96 PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVT 174 (450)
T ss_dssp CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHH
Confidence 34456777777888889999999998888877765543 2223333344443333 3333333
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcCCCCCcchHHHHHHHHHh--cCChhHHHHHHHHHHhC
Q 011137 159 KIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGKFKADVISYNVIANGWCL--VKRTNKALEVLKEMVDR 236 (493)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~m~~~ 236 (493)
.+...+. ..........+.....- ..+...... .+.+......+..++.+ ..+.+.|..++......
T Consensus 175 ~l~~~l~----~~~~~~~~a~~~l~~~p---~~~~~~~~~----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~ 243 (450)
T d1qsaa1 175 VLAGQMP----ADYQTIASAIISLANNP---NTVLTFART----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQA 243 (450)
T ss_dssp HHHHTCC----GGGHHHHHHHHHHHHCG---GGHHHHHHH----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHhhCC----hhHHHHHHHHHHHHhCh---HhHHHHHhc----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhc
Confidence 3332211 11122233333333222 222211111 22233333333333333 35788899888887654
Q ss_pred CCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCCCCCH
Q 011137 237 GLNPNLTTYNIVL----KGYFRAGQIEEAWRFFLEMKKRKCEIDVVTYTTIVHGFGVVGEIKRARNVFDGMVNGGVLPSV 312 (493)
Q Consensus 237 g~~p~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 312 (493)
... +...+..+- ......+..+.+..++......+. +.....-.+......+++..+...++.|... ..-..
T Consensus 244 ~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~ 319 (450)
T d1qsaa1 244 QQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKD 319 (450)
T ss_dssp TTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSH
T ss_pred ccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHH
Confidence 322 222222222 223345677888888888776643 4444455566667789999999999887543 22234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HH---HHHHH
Q 011137 313 ATYNAMIQVLCKKDSVENAILVFEEMVGKGYMPNSTTYNVVIRGLCHTGEMERALEFVGRMKDDECEPN-VQ---TYNIL 388 (493)
Q Consensus 313 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~---~~~~l 388 (493)
.-.--+..++...|+.++|...|...... ++ |..++.+ .+.|..-. +-. ......+. .. .-..-
T Consensus 320 r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~---fYG~LAa-~~Lg~~~~---~~~--~~~~~~~~~~~~~~~~~~r 387 (450)
T d1qsaa1 320 EWRYWQADLLLERGREAEAKEILHQLMQQ---RG---FYPMVAA-QRIGEEYE---LKI--DKAPQNVDSALTQGPEMAR 387 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS---HHHHHHH-HHTTCCCC---CCC--CCCCSCCCCHHHHSHHHHH
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC---hHHHHHH-HHcCCCCC---CCc--CCCCccHHHhhhcChHHHH
Confidence 44566788899999999999999988753 33 4444332 22332100 000 00000001 00 01123
Q ss_pred HHHHHhcCCHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCcccHHHHHHHHHHH
Q 011137 389 IRYFCDAGEIERGLELFEKMGSGVCLPNLDTYNILISSMFVRKKSDDLLVAGKLLIEM 446 (493)
Q Consensus 389 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~~~A~~~~~~m 446 (493)
+..+...|....|...|..+.+. .+......+.....+.|.++. |+......
T Consensus 388 a~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~---aI~a~~~~ 439 (450)
T d1qsaa1 388 VRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDL---SVQATIAG 439 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHH---HHHHHHHT
T ss_pred HHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhH---HHHHHHHH
Confidence 55667889999999999888764 355566677777778888888 66555544
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.94 E-value=0.88 Score=31.75 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 154 ADRAVKIFLSMHEHGCRQS-LNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 154 ~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
.++++.+++++.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus 54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 345555555555432 111 233334444555555555555555555443
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.61 E-value=0.98 Score=29.68 Aligned_cols=47 Identities=11% Similarity=0.055 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHhhcC
Q 011137 156 RAVKIFLSMHEHGCRQSLNSFNTILDLLCKEKKVEKAYNLFKVFRGK 202 (493)
Q Consensus 156 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~ 202 (493)
++.+-++.+...+..|++.+..+.+.+|-+.+++..|.++|+.++.+
T Consensus 24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K 70 (105)
T d1v54e_ 24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 70 (105)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33344444444444455555555555555555555555555544433
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.52 E-value=1.8 Score=28.36 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=25.0
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 011137 439 AGKLLIEMVDRGFMPRKFTFNRVLNGLLLIGNQGLAKEILRLQS 482 (493)
Q Consensus 439 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 482 (493)
+.+-++.+....+.|+.....+.++||.+.+|+..|.++++..+
T Consensus 25 ~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK 68 (105)
T d1v54e_ 25 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 68 (105)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 44445555555556666666666666666666666666665443
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