Citrus Sinensis ID: 011197
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 491 | 2.2.26 [Sep-21-2011] | |||||||
| O48593 | 567 | Asparagine--tRNA ligase, | yes | no | 0.991 | 0.858 | 0.820 | 0.0 | |
| Q6MEC9 | 467 | Asparagine--tRNA ligase O | yes | no | 0.947 | 0.995 | 0.593 | 1e-166 | |
| A3DBI2 | 464 | Asparagine--tRNA ligase O | yes | no | 0.942 | 0.997 | 0.559 | 1e-156 | |
| Q8DG51 | 462 | Asparagine--tRNA ligase O | yes | no | 0.914 | 0.971 | 0.594 | 1e-155 | |
| Q74E08 | 461 | Asparagine--tRNA ligase O | yes | no | 0.934 | 0.995 | 0.553 | 1e-154 | |
| P52276 | 462 | Asparagine--tRNA ligase O | N/A | no | 0.902 | 0.958 | 0.583 | 1e-154 | |
| Q899M9 | 463 | Asparagine--tRNA ligase O | yes | no | 0.940 | 0.997 | 0.539 | 1e-153 | |
| P58692 | 463 | Asparagine--tRNA ligase O | yes | no | 0.916 | 0.971 | 0.578 | 1e-153 | |
| A0PY64 | 463 | Asparagine--tRNA ligase O | yes | no | 0.908 | 0.963 | 0.559 | 1e-153 | |
| A5HZE1 | 463 | Asparagine--tRNA ligase O | yes | no | 0.902 | 0.956 | 0.554 | 1e-153 |
| >sp|O48593|SYNO_ARATH Asparagine--tRNA ligase, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SYNO PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/491 (82%), Positives = 445/491 (90%), Gaps = 4/491 (0%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ V+Y
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYV----VKY 376
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD 360
+LDNCKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG D
Sbjct: 377 VLDNCKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLD 436
Query: 361 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 420
LQSEHERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQ
Sbjct: 437 LQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQ 496
Query: 421 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 480
REERLE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD I
Sbjct: 497 REERLEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVI 556
Query: 481 PFPRTPGSVEF 491
PFPRTP S EF
Sbjct: 557 PFPRTPASAEF 567
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Arabidopsis thaliana (taxid: 3702) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2 |
| >sp|Q6MEC9|SYN_PARUW Asparagine--tRNA ligase OS=Protochlamydia amoebophila (strain UWE25) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 585 bits (1508), Expect = e-166, Method: Compositional matrix adjust.
Identities = 286/482 (59%), Positives = 354/482 (73%), Gaps = 17/482 (3%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
+ KI ++G E +G I + GWVRT+R Q + TFIE+NDGS LSN Q + T D
Sbjct: 2 RTKIKSLRGTTPEVRALIGHDITLKGWVRTVRNQKTFTFIEINDGSTLSNFQIIATPDIA 61
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKRVSRE 129
GYDQ+ + L +TG S+ G +V S G +Q +E++ I ++GK DP Y +QKKR + E
Sbjct: 62 GYDQLINQL-STGVSVSAIGTIVESPGKEQNLEMQATAITIIGKCDPEVYLLQKKRHTFE 120
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR+ AHLRPRTNT GAV RVRNALA+ATH+FFQ+ GF++I +PIIT SDCEGAG+ F V
Sbjct: 121 FLRSIAHLRPRTNTIGAVTRVRNALAFATHQFFQKRGFLYIHTPIITGSDCEGAGKMFQV 180
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL A +P +G +D++QDFF KP +LTVSGQLN E YA ALS+VYTF
Sbjct: 181 TTL--DQNNPARTP--------EGRVDYTQDFFGKPTYLTVSGQLNGEIYACALSDVYTF 230
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDM 309
GPTFRAENSNTSRHLAEFWMIEPE+AFADL D+M CA YL+ ++Y+LDNC+EDM
Sbjct: 231 GPTFRAENSNTSRHLAEFWMIEPEMAFADLNDNMDCAEDYLKYI----LKYVLDNCQEDM 286
Query: 310 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 369
+FFN + +I RL V F + SYT A+ +L KA KKFE+ VKWG DLQSEHER+L
Sbjct: 287 EFFNKHVATDLISRLEHVINTSFERASYTYAVRILEKADKKFEYPVKWGLDLQSEHERFL 346
Query: 370 TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 429
EE FG PVI++DYPK+IKAFYMR N+D +TVAAMD+LVP++GE+IGGSQREERL LE
Sbjct: 347 AEEFFGK-PVILTDYPKDIKAFYMRTNEDNKTVAAMDVLVPKVGEIIGGSQREERLSVLE 405
Query: 430 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489
+L E L + YWWYL+LR +GSVPH+GFG GFERLVQF TG+ENIRD IPFPR PG
Sbjct: 406 SKLKEFNLPAEEYWWYLELRKFGSVPHSGFGAGFERLVQFTTGMENIRDVIPFPRHPGKA 465
Query: 490 EF 491
+F
Sbjct: 466 DF 467
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Protochlamydia amoebophila (strain UWE25) (taxid: 264201) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A3DBI2|SYN_CLOTH Asparagine--tRNA ligase OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 550 bits (1418), Expect = e-156, Method: Compositional matrix adjust.
Identities = 269/481 (55%), Positives = 341/481 (70%), Gaps = 18/481 (3%)
Query: 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMT-SDAE 70
+K VK D VG IVVAGWVRT+R + FIE+NDGS N+Q V +
Sbjct: 1 MKTTLVKSLYRNTKDYVGKEIVVAGWVRTVRDSKAFGFIELNDGSFFKNLQIVFEEKNLP 60
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF 130
+ ++ ++ G++I G +V + G+KQ ELK KI + G S P YP+QKKR S E+
Sbjct: 61 NFKEIAK--LSVGSAIIAHGELVETPGAKQPFELKATKIEIEGASTPDYPLQKKRHSFEY 118
Query: 131 LRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT 190
LRT AHLRPRTNTF AV RVR+ LAYA HKFFQE GF+++ +PIIT SD EGAG+ F VT
Sbjct: 119 LRTIAHLRPRTNTFSAVFRVRSLLAYAIHKFFQERGFVYVHTPIITGSDAEGAGQMFKVT 178
Query: 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFG 250
TL ++ P+ +DG +D+S+DFF++ LTVSGQL ETY+ A N+YTFG
Sbjct: 179 TL----------DINNPPRKEDGTVDFSKDFFDRETNLTVSGQLEGETYSMAFRNIYTFG 228
Query: 251 PTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMD 310
PTFRAENSNT+RH AEFWM+EPE+AFADL+DDM A L+ + Y L+N E+M+
Sbjct: 229 PTFRAENSNTARHAAEFWMVEPEIAFADLEDDMELAEDMLKYI----INYCLENAPEEME 284
Query: 311 FFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT 370
FFN +I+ ++DRL+ + DF ++YT+AI++L KA +KFE+ VKWG DLQ+EHERYLT
Sbjct: 285 FFNNFIDNTLLDRLNNIVSSDFAHVTYTEAIDILSKADQKFEYPVKWGNDLQTEHERYLT 344
Query: 371 EEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEG 430
E+ F PV V+DYPK+IKAFYMR NDD +TVAAMD+LVP +GE+IGGSQREERL+YLE
Sbjct: 345 EKVFKK-PVFVTDYPKDIKAFYMRLNDDNKTVAAMDLLVPGVGEIIGGSQREERLDYLEN 403
Query: 431 RLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
R+ EL L + YWWYLDLR YGS HAGFGLGFER + + TG+ NIRD IPFPRT S E
Sbjct: 404 RMKELGLKMEDYWWYLDLRRYGSTRHAGFGLGFERAIMYITGMSNIRDVIPFPRTVHSAE 463
Query: 491 F 491
F
Sbjct: 464 F 464
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Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q8DG51|SYN_THEEB Asparagine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 547 bits (1410), Expect = e-155, Method: Compositional matrix adjust.
Identities = 277/466 (59%), Positives = 330/466 (70%), Gaps = 17/466 (3%)
Query: 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86
+VG I V GWVRT R TF+ +NDGS L+ +Q V+ + L TTGA+
Sbjct: 13 QVGDRITVKGWVRTKRELKECTFVNLNDGSTLAGLQVVIPNTVAAATPTMKDL-TTGAAA 71
Query: 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFG 145
G +V S G Q +EL +I L G +DP +YP+QKKR S EFLRT AHLRPRTNT G
Sbjct: 72 EFTGELVRSPGKNQAIELHAEEIHLWGTADPETYPLQKKRHSFEFLRTIAHLRPRTNTLG 131
Query: 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205
AV RVRNA A A H+FFQE GF+W+ +PIITASDCEGAGE F VTTL +
Sbjct: 132 AVMRVRNACATAIHQFFQERGFLWVHTPIITASDCEGAGELFTVTTL----------DLT 181
Query: 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265
PKT +G ID+SQDFF + A+LTVSGQL AE ATA +NVYTFGPTFRAENSNTSRHLA
Sbjct: 182 QPPKTPEGKIDFSQDFFGRRAYLTVSGQLEAEIMATAFTNVYTFGPTFRAENSNTSRHLA 241
Query: 266 EFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLS 325
EFWM+EPE+AF DL+ DM A A+LQ RY+LD+C EDM FF I+ ++
Sbjct: 242 EFWMVEPEMAFCDLRGDMELAEAFLQFV----FRYVLDHCPEDMAFFQERIDHSVMATAE 297
Query: 326 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 385
+A + F LSY++AI++L K+ + FEF V WG DLQSEHERYL EE + PVIV DYP
Sbjct: 298 QMATQPFAHLSYSEAIQVLEKSGRAFEFPVAWGLDLQSEHERYLAEE-YCQRPVIVYDYP 356
Query: 386 KEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWY 445
IKAFYMR NDDG+TVAAMD+L P+IGE+IGGSQREER + L+ R+ L+ YWWY
Sbjct: 357 AAIKAFYMRLNDDGKTVAAMDILAPKIGEIIGGSQREERFDVLQERIVTQGLDPAPYWWY 416
Query: 446 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
LDLR YGSVPHAGFGLGFERLVQF TG++NIRD IPFPRTPG+ EF
Sbjct: 417 LDLRRYGSVPHAGFGLGFERLVQFMTGMDNIRDVIPFPRTPGNAEF 462
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Thermosynechococcus elongatus (strain BP-1) (taxid: 197221) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q74E08|SYN_GEOSL Asparagine--tRNA ligase OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 545 bits (1404), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/482 (55%), Positives = 341/482 (70%), Gaps = 23/482 (4%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++++I ++ G G + ++V GWVRT R V F+ VNDGSCL+++Q V
Sbjct: 3 ERIRIREILAGTPAGTE-----VIVKGWVRTSRVGKGVAFLAVNDGSCLASLQVVAEPGL 57
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
Y +++ I TGA++ ++G V S + Q VEL K+V+VG +D YP+QKKR + E
Sbjct: 58 ANYHELRG--IGTGAAVAVRGIVAESPAAGQAVELHATKVVVVGGADEQYPLQKKRHTFE 115
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
+LRT AHLRPR+NTFGAV RVR++LA A H+FF E GF+++ +PIIT SDCEGAGE F V
Sbjct: 116 YLRTIAHLRPRSNTFGAVFRVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRV 175
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL PS+ P DG +D+SQDFF A LTVSGQL E +A A S++YTF
Sbjct: 176 TTLDPSA-----------PPMADGAVDFSQDFFAAQAGLTVSGQLEGELFAQAFSDIYTF 224
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDM 309
GPTFRAENSNT RH AEFWMIEPE+AFADL+DD A A + + Y C R++LDNC EDM
Sbjct: 225 GPTFRAENSNTPRHAAEFWMIEPEMAFADLRDDAALAEDFFR-YLC---RHVLDNCAEDM 280
Query: 310 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 369
FFN +++G++ R+ VA F + Y AIE L +A FE+ V+WG DLQ+EHERYL
Sbjct: 281 AFFNEHVDRGLLARVEQVAGSSFAMMEYGVAIEHLKRAAVPFEYPVEWGLDLQTEHERYL 340
Query: 370 TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 429
TE+ GG PV V +YP+EIKAFYMR+NDDGRTVAAMD+LVP++GE+IGGSQREER + LE
Sbjct: 341 TEQVVGG-PVFVVNYPQEIKAFYMRRNDDGRTVAAMDLLVPKVGEIIGGSQREERYDLLE 399
Query: 430 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489
R+ E + +S WWYLD R +GS PHAGFGLGFERL+ + TG+ENIRD IPFPRTP
Sbjct: 400 SRMREGGIAPESLWWYLDSRRWGSTPHAGFGLGFERLIMYLTGMENIRDVIPFPRTPRHA 459
Query: 490 EF 491
EF
Sbjct: 460 EF 461
|
Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) (taxid: 243231) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P52276|SYN_SYNY3 Asparagine--tRNA ligase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=asnS PE=3 SV=2 | Back alignment and function description |
|---|
Score = 543 bits (1400), Expect = e-154, Method: Compositional matrix adjust.
Identities = 269/461 (58%), Positives = 334/461 (72%), Gaps = 18/461 (3%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
++V GW+RT R +F+EVNDGS L+N+Q V+ YD++ S L TGA++ ++G
Sbjct: 19 VMVQGWLRTKRTLKDFSFVEVNDGSSLANLQVVLDGSLADYDRLLSQL-QTGAALVVEGK 77
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV 150
+ PS G Q+VELK K+ L+G +DP SYP+QKKR S EFLRT HLRPRTNT GAV RV
Sbjct: 78 LAPSPGKGQRVELKATKLELLGGADPGSYPLQKKRHSFEFLRTIGHLRPRTNTIGAVMRV 137
Query: 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKT 210
RNA A A H+FFQE GF+W+ +PIITASDCEGAG+ F VTTL + +PK
Sbjct: 138 RNACATAIHQFFQERGFLWVHTPIITASDCEGAGDLFKVTTL----------DLQRVPKN 187
Query: 211 KDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMI 270
+G ID+SQDFF K A+LTVSGQL AE A A NVYTFGPTFRAENSNTSRHLAEFWM+
Sbjct: 188 GEG-IDYSQDFFGKQAYLTVSGQLEAEVMALAFQNVYTFGPTFRAENSNTSRHLAEFWMV 246
Query: 271 EPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAER 330
EPE+AF DL+ D A +L+ +++L+ C EDM+FF+ I+ ++ +
Sbjct: 247 EPEMAFCDLEGDRQWAEEFLKYI----FKFVLEKCPEDMEFFDQRIDNTVLATADNIINN 302
Query: 331 DFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKA 390
+F L+Y++AI+LL KA +KFE+ V WG DLQSEHERYL E F P IV+DYPK+IKA
Sbjct: 303 EFAWLTYSEAIKLLEKADQKFEYPVAWGVDLQSEHERYLAETVFKR-PTIVTDYPKDIKA 361
Query: 391 FYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRH 450
FYMR NDDG+TVAAMD+L P+IGE+IGGSQREERL+ L R+ E + + WWYLDLR
Sbjct: 362 FYMRLNDDGKTVAAMDILAPKIGEIIGGSQREERLDILTQRMQEQGVPEEDLWWYLDLRR 421
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
YGSVPHAGFGLGFER+VQF TG+ NIRD IPFPRTP + EF
Sbjct: 422 YGSVPHAGFGLGFERIVQFMTGMANIRDVIPFPRTPMNAEF 462
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|Q899M9|SYN_CLOTE Asparagine--tRNA ligase OS=Clostridium tetani (strain Massachusetts / E88) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 260/482 (53%), Positives = 349/482 (72%), Gaps = 20/482 (4%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
KK+ I + P + +++ IVVAGW+RT R + FIE+NDGS N+Q ++ ++
Sbjct: 2 KKISIKQLYREPEKFINK---DIVVAGWIRTERTSKNFGFIELNDGSFFKNLQIIIDTNL 58
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
+ +D+V + +SI ++G +V + +KQ E++ +K+ + G S YP+QKKR S E
Sbjct: 59 DNFDKVSK--LPISSSIVVEGKLVATPSAKQPFEVQASKVTVEGTSLQDYPLQKKRHSFE 116
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR+ AHLRPR+NTF AV R+R+ AYA HKFFQE F+++ +PIITASDCEGAGE F V
Sbjct: 117 FLRSIAHLRPRSNTFSAVFRIRSLAAYAVHKFFQEKNFVYVHTPIITASDCEGAGEMFRV 176
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL ++ IPK +G ID+SQDFF+K A LTVSGQL+AE+YA A NVYTF
Sbjct: 177 TTL----------DLNNIPKNDEGKIDFSQDFFDKDAKLTVSGQLSAESYALAFGNVYTF 226
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDM 309
GPTFRAENSNT+RH +EFWMIEPE+AFADL D M A ++ + Y+L+N E+M
Sbjct: 227 GPTFRAENSNTARHASEFWMIEPEMAFADLTDYMDVAEEMVKYI----INYVLENAPEEM 282
Query: 310 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 369
+FFN++I+K + RL V +F +++YT+A++LL K+ +KF++ V+WG DLQ+EHERY+
Sbjct: 283 NFFNSFIDKDLFKRLDNVVNSEFKRITYTEAVDLLQKSGEKFQYPVEWGIDLQTEHERYI 342
Query: 370 TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 429
TE+ FG PV V+DYPK+IKAFYMR N+D +TVAA D+LVP +GE+IGGSQREERL+ LE
Sbjct: 343 TEKIFGK-PVFVTDYPKDIKAFYMRLNEDNKTVAAADLLVPGVGEIIGGSQREERLDVLE 401
Query: 430 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489
R+ E LN YWWYL+LR YGS H+GFGLGFER++ + TG+ NIRD IPFPRTPGS
Sbjct: 402 ERMKEFDLNEKDYWWYLELRKYGSAKHSGFGLGFERILMYMTGISNIRDVIPFPRTPGSA 461
Query: 490 EF 491
EF
Sbjct: 462 EF 463
|
Clostridium tetani (strain Massachusetts / E88) (taxid: 212717) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|P58692|SYN_NOSS1 Asparagine--tRNA ligase OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 543 bits (1398), Expect = e-153, Method: Compositional matrix adjust.
Identities = 274/474 (57%), Positives = 334/474 (70%), Gaps = 24/474 (5%)
Query: 19 GGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSG 78
G P+E L VV GWVRT R FIEVNDGS L N+Q V+ D Y +
Sbjct: 13 GQPDESL-------VVQGWVRTKRELKGFAFIEVNDGSSLGNLQVVINQDLPDYAVIVKQ 65
Query: 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHL 137
L TGAS+ + G +V SQG Q++ELK + + G++DP +YP+QKKR S EFLRT HL
Sbjct: 66 L-NTGASVEVNGVLVASQGKGQRIELKAEAVKVYGEADPETYPLQKKRHSFEFLRTIGHL 124
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
R RTN+FGAV RVRNA + A H+FFQE GF+W+ +PIITASDCEGAGE F VT+L
Sbjct: 125 RSRTNSFGAVFRVRNACSAAIHQFFQERGFLWVHTPIITASDCEGAGELFSVTSL----- 179
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN 257
+ IP+T++ ID+SQDFF KP +LTVSGQL AE A A SNVYTFGPTFRAEN
Sbjct: 180 -----DLKQIPRTENQGIDYSQDFFAKPTYLTVSGQLEAEVMAMAFSNVYTFGPTFRAEN 234
Query: 258 SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIE 317
SNTSRHLAEFWM+EPE+AF DL+ DM A A+L+ ++L+ C EDM+FFN I+
Sbjct: 235 SNTSRHLAEFWMVEPEMAFCDLEGDMDLAEAFLKHI----FNHVLEKCPEDMEFFNQRID 290
Query: 318 KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGC 377
++ + F +L+YTDAI+LL KA KFE+ V WG DLQSEHERYL E+ F
Sbjct: 291 NTVLATAENIINNQFERLTYTDAIKLLEKADVKFEYPVSWGLDLQSEHERYLAEQLFKK- 349
Query: 378 PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKL 437
PVIV+DYP +IKAFYMR +DD +TV AMD+L P+IGE+IGGSQREERL+ LE R+ +
Sbjct: 350 PVIVTDYPAQIKAFYMRLSDDEKTVRAMDVLAPKIGEIIGGSQREERLDVLERRVLAQGM 409
Query: 438 NRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
+ WWYLDLR YG+VPHAGFGLGFERLVQF TG+ NIRD IPFPRTP + EF
Sbjct: 410 QPEDLWWYLDLRRYGTVPHAGFGLGFERLVQFITGMGNIRDVIPFPRTPQNAEF 463
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A0PY64|SYN_CLONN Asparagine--tRNA ligase OS=Clostridium novyi (strain NT) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 542 bits (1396), Expect = e-153, Method: Compositional matrix adjust.
Identities = 259/463 (55%), Positives = 338/463 (73%), Gaps = 17/463 (3%)
Query: 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88
G + ++GW+RTLRA + FIEVNDGS N+Q V ++ E + ++ I++ SI +
Sbjct: 18 GKEVKISGWIRTLRASNKFGFIEVNDGSFFKNIQVVFGAELENFKEISKYAISS--SISV 75
Query: 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+G VV ++G+KQ E+ K+VL GKSD YP+QKKR + E+LR+ AHLRPR+N F AV
Sbjct: 76 EGEVVITEGAKQPFEIHAKKVVLEGKSDADYPLQKKRHTFEYLRSIAHLRPRSNAFSAVF 135
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVR+ AYA HKFFQ+ GF+++ +PIIT SDCEGAGE F VTTL E+P P
Sbjct: 136 RVRSLAAYAIHKFFQDQGFVYVHTPIITGSDCEGAGEMFRVTTL------DMENP----P 185
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
K + G +D+ +DFF K A LTVSGQL AE YA A NVYTFGPTFRAENSNT+RH +EFW
Sbjct: 186 KDEKGNVDYKEDFFGKQANLTVSGQLEAEIYALAFRNVYTFGPTFRAENSNTARHASEFW 245
Query: 269 MIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 328
MIEPE+AFA+LKD M A ++ + Y+ +N E+M+FFN +I+KG+++RL V
Sbjct: 246 MIEPEMAFAELKDYMDVAEQMVKYI----INYVRENAPEEMEFFNKFIDKGLLERLDNVV 301
Query: 329 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 388
DF ++SYT+A+E+L K+ +FE+ V+WG DLQ+EHERYLTE+ + PV V+DYPK+I
Sbjct: 302 NSDFARISYTEAVEILQKSGAEFEYPVEWGIDLQTEHERYLTEQIYKK-PVFVTDYPKDI 360
Query: 389 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDL 448
KAFYMR NDD +TVAA D+LVP IGE+IGGSQREERL+ LE R+ EL L ++ YWWYL+L
Sbjct: 361 KAFYMRMNDDNKTVAAADLLVPGIGEIIGGSQREERLDILEARMAELGLEKEDYWWYLEL 420
Query: 449 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
R YG HAG+GLGFER++ + TG+ NIRD IPFPRTPG EF
Sbjct: 421 RKYGETKHAGYGLGFERMIMYLTGMGNIRDVIPFPRTPGVSEF 463
|
Clostridium novyi (strain NT) (taxid: 386415) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
| >sp|A5HZE1|SYN_CLOBH Asparagine--tRNA ligase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=asnS PE=3 SV=1 | Back alignment and function description |
|---|
Score = 541 bits (1394), Expect = e-153, Method: Compositional matrix adjust.
Identities = 255/460 (55%), Positives = 340/460 (73%), Gaps = 17/460 (3%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ + GWVRT+R + F+EVNDGS N+Q ++ S E + ++ I+T S+ ++G
Sbjct: 21 VKINGWVRTVRDSKNFAFVEVNDGSFFKNVQVILESSLENFKELCKMPIST--SVEVEGI 78
Query: 92 VVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVR 151
V P+ +KQ E+K +I + GKS YP+QKKR + E+LRT AHLRPR+N F AV RVR
Sbjct: 79 VQPTPNAKQPFEIKATRISIEGKSSTDYPLQKKRHTFEYLRTIAHLRPRSNAFSAVFRVR 138
Query: 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTK 211
+ AYA HKFFQE GF++ ++PIIT SDCEGAGE F +TT+ ++ IPKT+
Sbjct: 139 SLAAYAVHKFFQERGFVYTNTPIITGSDCEGAGEMFQLTTM----------DLNNIPKTE 188
Query: 212 DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 271
+G ID+S+DFF PA LTVSGQL+AET+A A NVYTFGPTFRAENSNT+RH +EFWMIE
Sbjct: 189 EGKIDFSKDFFGSPANLTVSGQLSAETFALAFRNVYTFGPTFRAENSNTARHASEFWMIE 248
Query: 272 PELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERD 331
PE+AFA+L D + A ++ + Y+++N E+M FFN++++KG+ DRL V D
Sbjct: 249 PEMAFAELTDYLDNAEDMVKFV----INYVMENAPEEMAFFNSFVDKGLFDRLDNVVNSD 304
Query: 332 FVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAF 391
F +++YT+A+ELL K+ KF++ V+WG DLQ+EHERYLTE+ F PV V+DYPK+IKAF
Sbjct: 305 FKRITYTEAVELLQKSGVKFDYEVEWGIDLQTEHERYLTEQIFKK-PVFVTDYPKDIKAF 363
Query: 392 YMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHY 451
YMR NDDG+TVAA D+LVP +GE+IGGSQREERL+ LE R++EL LN++ YWWYL+LR Y
Sbjct: 364 YMRLNDDGKTVAAADLLVPGVGEIIGGSQREERLDVLEKRMEELNLNKEDYWWYLELRKY 423
Query: 452 GSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
G H+G+GLGFER++ + TG+ NIRD IPFPRTPGS EF
Sbjct: 424 GETKHSGYGLGFERILMYITGMTNIRDVIPFPRTPGSAEF 463
|
Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) (taxid: 441771) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 2 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 491 | ||||||
| 224093120 | 578 | predicted protein [Populus trichocarpa] | 0.991 | 0.842 | 0.877 | 0.0 | |
| 224133182 | 574 | predicted protein [Populus trichocarpa] | 0.991 | 0.848 | 0.865 | 0.0 | |
| 359495974 | 584 | PREDICTED: asparaginyl-tRNA synthetase, | 0.989 | 0.832 | 0.859 | 0.0 | |
| 449458950 | 562 | PREDICTED: asparagine--tRNA ligase, chlo | 0.989 | 0.864 | 0.820 | 0.0 | |
| 15236037 | 567 | asparaginyl-tRNA synthetase [Arabidopsis | 0.991 | 0.858 | 0.820 | 0.0 | |
| 2664210 | 566 | asparaginyl-tRNA synthetase [Arabidopsis | 0.991 | 0.860 | 0.820 | 0.0 | |
| 297804454 | 567 | hypothetical protein ARALYDRAFT_914989 [ | 0.991 | 0.858 | 0.820 | 0.0 | |
| 356514300 | 551 | PREDICTED: asparaginyl-tRNA synthetase, | 0.983 | 0.876 | 0.815 | 0.0 | |
| 356565357 | 550 | PREDICTED: asparaginyl-tRNA synthetase, | 0.983 | 0.878 | 0.815 | 0.0 | |
| 357476849 | 565 | Asparaginyl-tRNA synthetase [Medicago tr | 0.979 | 0.851 | 0.793 | 0.0 |
| >gi|224093120|ref|XP_002309798.1| predicted protein [Populus trichocarpa] gi|222852701|gb|EEE90248.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2350), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/491 (87%), Positives = 462/491 (94%), Gaps = 4/491 (0%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFRKKLKI D+KGGP+EGLDRVG IVV GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 92 VGNRVGEFRKKLKIADIKGGPDEGLDRVGKTIVVMGWVRTLRVQSSVTFIEVNDGSCLSN 151
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
MQCVM +AEGYDQV+SGLITTGASI +QG VV SQGSKQKVELKVNKIVLVGKSDPSYP
Sbjct: 152 MQCVMGLEAEGYDQVESGLITTGASILVQGTVVESQGSKQKVELKVNKIVLVGKSDPSYP 211
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 212 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 271
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIP S+E A SPVD IPKTKDGLIDWSQDFF KPAFLTVSGQLNAETYA
Sbjct: 272 EGAGEQFCVTTLIPGSQEVANSPVDRIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 331
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ V++
Sbjct: 332 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLTDDMACATAYLQYV----VKH 387
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD 360
IL+NCKEDM+FFNTWIEKGIIDRL+ VAE+DFVQL+YTDA+ELL+KAKKKFEF V+WGCD
Sbjct: 388 ILENCKEDMEFFNTWIEKGIIDRLTDVAEKDFVQLTYTDAVELLLKAKKKFEFPVEWGCD 447
Query: 361 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 420
LQSEHERY+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQ
Sbjct: 448 LQSEHERYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQ 507
Query: 421 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 480
REERLEYLE RLDELKLN++S+WWYLDLR YGSVPHAGFGLGFERLVQFATG+ENIRDAI
Sbjct: 508 REERLEYLEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGLENIRDAI 567
Query: 481 PFPRTPGSVEF 491
PFPR PGS EF
Sbjct: 568 PFPRVPGSAEF 578
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224133182|ref|XP_002327980.1| predicted protein [Populus trichocarpa] gi|222837389|gb|EEE75768.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/491 (86%), Positives = 460/491 (93%), Gaps = 4/491 (0%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
+G++VGEFR+KLKI D+KGGP+EGLDRVG I+V GWVRTLR QSSVTFIEVNDGSCLSN
Sbjct: 88 IGNRVGEFRRKLKIADIKGGPDEGLDRVGKTIIVMGWVRTLRVQSSVTFIEVNDGSCLSN 147
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM +AEGYDQV+SGL+TTGASIW+QG VV SQGSKQKVELKV KIV VGKSDPSYP
Sbjct: 148 LQCVMDLEAEGYDQVESGLVTTGASIWMQGTVVKSQGSKQKVELKVIKIVAVGKSDPSYP 207
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDC
Sbjct: 208 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDC 267
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIP S+EAA SPVD IPKTKDGLIDWSQDFF KPAFLTVSGQLNAETYA
Sbjct: 268 EGAGEQFCVTTLIPGSQEAANSPVDGIPKTKDGLIDWSQDFFGKPAFLTVSGQLNAETYA 327
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ VR+
Sbjct: 328 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYV----VRH 383
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD 360
IL+NCKEDM+FFNTWIEKGIIDRLS V E+DFVQL+YTDAIELL+KAKKKFEF ++WGCD
Sbjct: 384 ILENCKEDMEFFNTWIEKGIIDRLSDVVEKDFVQLTYTDAIELLLKAKKKFEFPLEWGCD 443
Query: 361 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 420
LQSEHERY+TEE FGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVPR+GELIGGSQ
Sbjct: 444 LQSEHERYITEEVFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPRVGELIGGSQ 503
Query: 421 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 480
REERLEY+E RLDELKLN++S+WWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAI
Sbjct: 504 REERLEYIEDRLDELKLNKESFWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAI 563
Query: 481 PFPRTPGSVEF 491
PFPR PGS EF
Sbjct: 564 PFPRVPGSAEF 574
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359495974|ref|XP_003635124.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like isoform 2 [Vitis vinifera] gi|297744376|emb|CBI37350.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 865 bits (2236), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/490 (85%), Positives = 456/490 (93%), Gaps = 4/490 (0%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRK+L++VD+KGGP+EGLDR+G + V GWVRTLR QSSV FIEVNDGSCLSNM
Sbjct: 99 GEKVGEFRKRLRVVDIKGGPDEGLDRLGQTLAVKGWVRTLRVQSSVIFIEVNDGSCLSNM 158
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVM SDA+GYDQV+SG ITTGAS+ IQG +V SQGSKQKVELKV KIV VGKSDPS+PI
Sbjct: 159 QCVMNSDADGYDQVESGSITTGASVSIQGTLVASQGSKQKVELKVLKIVTVGKSDPSFPI 218
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+WISSPIITASDCE
Sbjct: 219 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWISSPIITASDCE 278
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIPSSREA +S VDAIPK KDGLIDWSQDFF KPAFLTVSGQLNAETYAT
Sbjct: 279 GAGEQFCVTTLIPSSREATDSTVDAIPKAKDGLIDWSQDFFGKPAFLTVSGQLNAETYAT 338
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYI 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ V YI
Sbjct: 339 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYV----VTYI 394
Query: 302 LDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 361
L+NCKEDM+FFNTWIEKGII+RLS VAE++FVQL+YTDA+ELL++A KKFEF VKWGCDL
Sbjct: 395 LENCKEDMEFFNTWIEKGIINRLSDVAEKNFVQLTYTDAVELLLRANKKFEFPVKWGCDL 454
Query: 362 QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQR 421
QSEHERY+TE AFGGCPVI+ DYPK+IKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQR
Sbjct: 455 QSEHERYITEVAFGGCPVIIRDYPKDIKAFYMRRNDDGKTVAAMDMLVPRVGELIGGSQR 514
Query: 422 EERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 481
EERLEYLE RLD+LKL++DSYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIP
Sbjct: 515 EERLEYLEERLDDLKLSKDSYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIP 574
Query: 482 FPRTPGSVEF 491
FPRTPGS EF
Sbjct: 575 FPRTPGSAEF 584
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449458950|ref|XP_004147209.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] gi|449504980|ref|XP_004162346.1| PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 402/490 (82%), Positives = 449/490 (91%), Gaps = 4/490 (0%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G KVGEFRKKL+I ++KGG +EG+DR+G VV GWVRTLR QSSVTF+EVNDGSC+SNM
Sbjct: 77 GEKVGEFRKKLRISEIKGGRDEGVDRLGQTFVVMGWVRTLRVQSSVTFMEVNDGSCISNM 136
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCV+ S EGYDQV+SGLITTGAS+W++G VV SQGSKQKVELK+ K+++VGKSDPS+P+
Sbjct: 137 QCVIDSTTEGYDQVESGLITTGASVWVEGVVVASQGSKQKVELKLQKVIVVGKSDPSFPV 196
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKK+VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 197 QKKKVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 256
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIPSS E A S V +IPKTK+G IDWSQDFF KPAFLTVSGQLNAETYAT
Sbjct: 257 GAGEQFCVTTLIPSSGEPARSDVGSIPKTKEGFIDWSQDFFGKPAFLTVSGQLNAETYAT 316
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYI 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDM+CATAYLQ VR+I
Sbjct: 317 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMSCATAYLQYV----VRHI 372
Query: 302 LDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 361
L+NCKED+DFFNTWIEKGIIDRL+ + E DFVQL YTDAIELL++A KKFE+ VKWG DL
Sbjct: 373 LENCKEDLDFFNTWIEKGIIDRLTNLVENDFVQLPYTDAIELLLRANKKFEYPVKWGSDL 432
Query: 362 QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQR 421
QSEHERY+TE AFGGCPVI+ DYP++IKAFYMRQNDDG+TVAAMDMLVP+IGELIGGSQR
Sbjct: 433 QSEHERYITEVAFGGCPVIIRDYPRDIKAFYMRQNDDGKTVAAMDMLVPKIGELIGGSQR 492
Query: 422 EERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 481
EERL+YLE RLD+LKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRDAIP
Sbjct: 493 EERLDYLEARLDDLKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDAIP 552
Query: 482 FPRTPGSVEF 491
FPR+PGS EF
Sbjct: 553 FPRSPGSAEF 562
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15236037|ref|NP_193462.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] gi|55584148|sp|O48593.3|SYNO_ARATH RecName: Full=Asparagine--tRNA ligase, chloroplastic/mitochondrial; AltName: Full=Asparaginyl-tRNA synthetase; Short=AsnRS; Flags: Precursor gi|19310458|gb|AAL84964.1| AT4g17300/dl4685w [Arabidopsis thaliana] gi|332658474|gb|AEE83874.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2211), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/491 (82%), Positives = 445/491 (90%), Gaps = 4/491 (0%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 141 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ V+Y
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYV----VKY 376
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD 360
+LDNCKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG D
Sbjct: 377 VLDNCKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLD 436
Query: 361 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 420
LQSEHERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQ
Sbjct: 437 LQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQ 496
Query: 421 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 480
REERLE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD I
Sbjct: 497 REERLEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVI 556
Query: 481 PFPRTPGSVEF 491
PFPRTP S EF
Sbjct: 557 PFPRTPASAEF 567
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2664210|emb|CAA10904.1| asparaginyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/491 (82%), Positives = 445/491 (90%), Gaps = 4/491 (0%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 80 FGSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 139
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYP
Sbjct: 140 LQCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYP 199
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 200 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 259
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 260 EGAGEQFCVTTLIPSSHEYTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 319
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ V+Y
Sbjct: 320 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYV----VKY 375
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD 360
+LDNCKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG D
Sbjct: 376 VLDNCKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLD 435
Query: 361 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 420
LQSEHERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQ
Sbjct: 436 LQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQ 495
Query: 421 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 480
REERLE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD I
Sbjct: 496 REERLEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVI 555
Query: 481 PFPRTPGSVEF 491
PFPRTP S EF
Sbjct: 556 PFPRTPASAEF 566
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297804454|ref|XP_002870111.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] gi|297315947|gb|EFH46370.1| hypothetical protein ARALYDRAFT_914989 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 853 bits (2204), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/491 (82%), Positives = 444/491 (90%), Gaps = 4/491 (0%)
Query: 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSN 60
GSKVGEFRKKLKI +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN
Sbjct: 81 FGSKVGEFRKKLKIAEVKGGADEGLGRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSN 140
Query: 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+QCVM SDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VGK D SYP
Sbjct: 141 LQCVMNSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGKCDSSYP 200
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC 180
IQKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDC
Sbjct: 201 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDC 260
Query: 181 EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYA 240
EGAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYA
Sbjct: 261 EGAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYA 320
Query: 241 TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300
TALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ V+Y
Sbjct: 321 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYV----VKY 376
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD 360
+LDNCKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA +KF+F VKWG D
Sbjct: 377 VLDNCKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEVLLKANRKFDFPVKWGLD 436
Query: 361 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQ 420
LQSEHERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQ
Sbjct: 437 LQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQ 496
Query: 421 REERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAI 480
REERLE LE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD I
Sbjct: 497 REERLEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVI 556
Query: 481 PFPRTPGSVEF 491
PFPRTP S EF
Sbjct: 557 PFPRTPASAEF 567
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514300|ref|XP_003525844.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2195), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/489 (81%), Positives = 443/489 (90%), Gaps = 6/489 (1%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D G +VV GWVRTLR QS VTF+E+NDGSCLSNMQ
Sbjct: 69 NRVQQFRRKLRVSEIKEG--DGADVFGRNLVVQGWVRTLRIQSIVTFLEINDGSCLSNMQ 126
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 127 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 186
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 187 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 246
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA 242
AGEQFCVTTLIPSS E +SPVDAIPKT DGLIDWSQDFF KPAFLTVSGQLN ETYAT+
Sbjct: 247 AGEQFCVTTLIPSSHETTDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATS 306
Query: 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL 302
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ +R++L
Sbjct: 307 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFV----IRHVL 362
Query: 303 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ 362
DNCKEDM+FF+TWI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQ
Sbjct: 363 DNCKEDMEFFDTWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQ 422
Query: 363 SEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQRE 422
SEHERY+TEEAF GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQRE
Sbjct: 423 SEHERYITEEAFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQRE 482
Query: 423 ERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 482
ERLEYLE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRD IPF
Sbjct: 483 ERLEYLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPF 542
Query: 483 PRTPGSVEF 491
PRTPGS EF
Sbjct: 543 PRTPGSAEF 551
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356565357|ref|XP_003550908.1| PREDICTED: asparaginyl-tRNA synthetase, chloroplastic/mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 849 bits (2193), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/489 (81%), Positives = 443/489 (90%), Gaps = 6/489 (1%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
++V +FR+KL++ ++K G +G D +G +VV GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 68 NRVQQFRRKLRVSEIKEG--DGADVLGRNLVVQGWVRTLRIQSSVTFLEINDGSCLSNMQ 125
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ S+AEGYDQV+SGL+TTGAS+W+QG VV SQGSKQKVELKVNKIVL+GKSDPS+PIQ
Sbjct: 126 CVLNSEAEGYDQVESGLVTTGASVWVQGVVVKSQGSKQKVELKVNKIVLIGKSDPSFPIQ 185
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKR SREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 186 KKRASREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 245
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA 242
AGEQFCVTTLIPSS E +SPVDAIPKT DGLIDWSQDFF KPAFLTVSGQLN ETYATA
Sbjct: 246 AGEQFCVTTLIPSSHETNDSPVDAIPKTNDGLIDWSQDFFGKPAFLTVSGQLNGETYATA 305
Query: 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL 302
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ +R++L
Sbjct: 306 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFV----IRHVL 361
Query: 303 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ 362
DNCKEDM+FF+ WI KGIIDRLS VA++D VQ++YT+AI+LL A KKFEF VKWG DLQ
Sbjct: 362 DNCKEDMEFFDAWINKGIIDRLSDVADKDVVQITYTEAIDLLSGANKKFEFPVKWGSDLQ 421
Query: 363 SEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQRE 422
SEHERY+TEE F GCPVI+ DYPK+IKAFYMRQNDDGRTVAAMDMLVP IGELIGGSQRE
Sbjct: 422 SEHERYITEEVFSGCPVIIRDYPKDIKAFYMRQNDDGRTVAAMDMLVPGIGELIGGSQRE 481
Query: 423 ERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 482
ERLEYLE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRD IPF
Sbjct: 482 ERLEYLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGFERLVQFATGMDNIRDVIPF 541
Query: 483 PRTPGSVEF 491
PRTPGS EF
Sbjct: 542 PRTPGSAEF 550
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357476849|ref|XP_003608710.1| Asparaginyl-tRNA synthetase [Medicago truncatula] gi|355509765|gb|AES90907.1| Asparaginyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2174), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 403/508 (79%), Positives = 448/508 (88%), Gaps = 27/508 (5%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
+KV +FRKKLK+ DVK G D +G +V+ GWVRTLR QSSVTF+E+NDGSCLSNMQ
Sbjct: 66 NKVPQFRKKLKVSDVKDGQ---FDSLGNTLVLQGWVRTLRLQSSVTFLEINDGSCLSNMQ 122
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122
CV+ ++ EGYDQV+SGLITTGAS+W+QG VV SQG+KQKVELK+NKIVLVGKSDPS+PIQ
Sbjct: 123 CVLDTEVEGYDQVESGLITTGASVWVQGIVVKSQGTKQKVELKLNKIVLVGKSDPSFPIQ 182
Query: 123 KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG 182
KKRVSREFLRTKAHLR RTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCEG
Sbjct: 183 KKRVSREFLRTKAHLRARTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCEG 242
Query: 183 AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA 242
AGEQFCVTTLIP+S E A+SPVDAIPK D LIDWSQDFF KPAFLTVSGQLNAETYATA
Sbjct: 243 AGEQFCVTTLIPNSHETADSPVDAIPK-NDKLIDWSQDFFGKPAFLTVSGQLNAETYATA 301
Query: 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL 302
LS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ +R+IL
Sbjct: 302 LSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQFV----IRHIL 357
Query: 303 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ 362
DNCKEDM+FFNTWI+KGIIDRLS VAE+D +Q++YT+A++LL +A KKFEF VKWGCDLQ
Sbjct: 358 DNCKEDMEFFNTWIDKGIIDRLSDVAEKDVLQITYTEAVDLLSRANKKFEFPVKWGCDLQ 417
Query: 363 SEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR----------- 411
SEHERY+TEEAFGGCPVI+ DYPK+IKAFYMRQNDDG+TVAAMDMLVP+
Sbjct: 418 SEHERYITEEAFGGCPVIIRDYPKDIKAFYMRQNDDGKTVAAMDMLVPKLGALIVCQCWA 477
Query: 412 --------IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGF 463
IGELIGGSQREERLE+LE RLD+LKLN+D+YWWYLDLR YGSVPHAGFGLGF
Sbjct: 478 GEPRDYITIGELIGGSQREERLEHLEARLDDLKLNKDAYWWYLDLRRYGSVPHAGFGLGF 537
Query: 464 ERLVQFATGVENIRDAIPFPRTPGSVEF 491
ERLVQFATG++NIRD IPFPRTPGS EF
Sbjct: 538 ERLVQFATGMDNIRDVIPFPRTPGSAEF 565
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 491 | ||||||
| TAIR|locus:2130804 | 567 | NS1 [Arabidopsis thaliana (tax | 0.989 | 0.857 | 0.795 | 5.9e-215 | |
| TAIR|locus:2014005 | 571 | SYNC3 [Arabidopsis thaliana (t | 0.568 | 0.488 | 0.586 | 1.8e-129 | |
| TIGR_CMR|SO_2218 | 466 | SO_2218 "asparaginyl-tRNA synt | 0.922 | 0.972 | 0.536 | 5.2e-129 | |
| TAIR|locus:2165001 | 572 | SYNC1 [Arabidopsis thaliana (t | 0.566 | 0.486 | 0.602 | 5.6e-126 | |
| UNIPROTKB|P0A8M0 | 466 | asnS "asparaginyl-tRNA synthet | 0.922 | 0.972 | 0.516 | 2.1e-123 | |
| TIGR_CMR|CPS_2591 | 466 | CPS_2591 "asparaginyl-tRNA syn | 0.904 | 0.952 | 0.514 | 3.1e-122 | |
| TIGR_CMR|GSU_1156 | 461 | GSU_1156 "asparaginyl-tRNA syn | 0.806 | 0.859 | 0.575 | 5.1e-122 | |
| UNIPROTKB|Q9KSF9 | 466 | asnS "Asparagine--tRNA ligase" | 0.904 | 0.952 | 0.520 | 1.2e-120 | |
| TIGR_CMR|VC_1297 | 466 | VC_1297 "asparaginyl-tRNA synt | 0.904 | 0.952 | 0.520 | 1.2e-120 | |
| TIGR_CMR|BA_4802 | 463 | BA_4802 "asparaginyl-tRNA synt | 0.800 | 0.848 | 0.541 | 1.5e-115 |
| TAIR|locus:2130804 NS1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2077 (736.2 bits), Expect = 5.9e-215, P = 5.9e-215
Identities = 390/490 (79%), Positives = 432/490 (88%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
GSKVGEFRKKL+I +VKGG +EGL RVG + + GWVRTLR+QSSVTFIE+NDGSCLSN+
Sbjct: 82 GSKVGEFRKKLRIAEVKGGADEGLSRVGQSLNIMGWVRTLRSQSSVTFIEINDGSCLSNL 141
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMTSDAEGYDQV+SG I TGAS+ +QG +V SQG+KQKVELKV KI++VG+ D SYPI
Sbjct: 142 QCVMTSDAEGYDQVESGSILTGASVSVQGTIVASQGTKQKVELKVEKIIVVGECDSSYPI 201
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRN LAYATHKFFQE+GF+W++SPIITASDCE
Sbjct: 202 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNTLAYATHKFFQESGFVWVASPIITASDCE 261
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIPSS E ++ +DAIPKTK GLIDWSQDFF KPAFLTVSGQLN ETYAT
Sbjct: 262 GAGEQFCVTTLIPSSHENTDTSIDAIPKTKGGLIDWSQDFFGKPAFLTVSGQLNGETYAT 321
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYI 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ V+Y+
Sbjct: 322 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLDDDMACATAYLQYV----VKYV 377
Query: 302 LDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 361
LDNCKEDM+FF+TWIEKGII RLS VAE++F+QL YTDAIE+L+KA KKF+F VKWG DL
Sbjct: 378 LDNCKEDMEFFDTWIEKGIIRRLSDVAEKEFLQLGYTDAIEILLKANKKFDFPVKWGLDL 437
Query: 362 QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQX 421
QSEHERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPRIGELIGGSQ
Sbjct: 438 QSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRIGELIGGSQR 497
Query: 422 XXXXXXXXXXXXXXKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 481
KLN++SYWWYLDLR YGSVPHAGFGLGFERLVQF TG++NIRD IP
Sbjct: 498 EERLEVLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFVTGIDNIRDVIP 557
Query: 482 FPRTPGSVEF 491
FPRTP S EF
Sbjct: 558 FPRTPASAEF 567
|
|
| TAIR|locus:2014005 SYNC3 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 860 (307.8 bits), Expect = 1.8e-129, Sum P(2) = 1.8e-129
Identities = 169/288 (58%), Positives = 210/288 (72%)
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+PK DG ID+S DFF + AFLTVSGQL ETYA ALS+VYTFGPTFRAENS+TSRHLAE
Sbjct: 288 LPKN-DGKIDYSNDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSHTSRHLAE 346
Query: 267 FWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLST 326
FWM+EPE+AFAD+ DDM CA AY++ Y C ++++D C +DM+ + +++G RL+
Sbjct: 347 FWMVEPEIAFADIHDDMNCAEAYVK-YMC---KWLMDKCGDDMELMDKNVDEGCTKRLNM 402
Query: 327 VAERDFVQLSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVS 382
VA+ F +++YT+AIE L KA K F+ V+WG DL SEHERYLTE F P+IV
Sbjct: 403 VAKASFKRVTYTEAIERLEKAVAQGKVVFDNKVEWGIDLASEHERYLTEVEFDQKPIIVY 462
Query: 383 DYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSY 442
+YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ L + Y
Sbjct: 463 NYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKQRIEEMGLPMEPY 522
Query: 443 WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
WYLDLR YG+V H GFGLGFER++QFATG++NIRD IPFPR PG +
Sbjct: 523 EWYLDLRRYGTVKHCGFGLGFERMIQFATGIDNIRDVIPFPRYPGKAD 570
|
|
| TIGR_CMR|SO_2218 SO_2218 "asparaginyl-tRNA synthetase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
Identities = 253/472 (53%), Positives = 321/472 (68%)
Query: 23 EGLDRVGLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+G VG + V GWVRT R +++ ++F+ V DGSC + +Q V+ + E YD L T
Sbjct: 11 KGEHAVGSTVTVRGWVRTRRDSKAGISFLAVYDGSCFNPIQGVVPNSLENYDNEVLKL-T 69
Query: 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVG-KSDP-SYPIQKKRVSREFLRTKAHLRP 139
G S+ + G++V S G+ Q EL+V + + G DP +YP+ KR S E LR AHLRP
Sbjct: 70 AGCSVIVTGDIVESPGAGQAYELQVTAVEVTGWVEDPDTYPMAAKRHSIEHLRELAHLRP 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
RTN GAVARVRN L+ A H+F+ ENGF+W+S+P+ITASDCEGAGE F V+TL
Sbjct: 130 RTNIIGAVARVRNCLSQAIHRFYHENGFVWVSTPLITASDCEGAGEMFRVSTL------- 182
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
++ +P+T DG +D+ +DFF K AFLTVSGQLN ETYA ALS +YTFGPTFRAENSN
Sbjct: 183 ---DMENLPRTSDGKVDYDKDFFGKEAFLTVSGQLNGETYACALSKIYTFGPTFRAENSN 239
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKG 319
TSRHLAEFWM+EPE+AFA L D A L+ Y+ +L +D+ FF ++K
Sbjct: 240 TSRHLAEFWMVEPEVAFATLNDIAGLAEGMLK-YA---FNAVLTERMDDLQFFAQHVDKT 295
Query: 320 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 379
+I+RL + DF Q+ YTDA+E+L K+ ++FEF V WG DL SEHERYL EE F PV
Sbjct: 296 VIERLQSFVSSDFAQVDYTDAVEILQKSGREFEFPVSWGIDLSSEHERYLAEEHFKA-PV 354
Query: 380 IVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNR 439
+V +YPK+IKAFYMR N+DG+TVAAMD+L P IGE+IGGSQ LN+
Sbjct: 355 VVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDMRLEEMDLNK 414
Query: 440 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
+ YWWY DLR YG+VPHAGFGLGFERLV + TGV NIRD IPFPR P + F
Sbjct: 415 EDYWWYRDLRRYGTVPHAGFGLGFERLVSYVTGVSNIRDVIPFPRAPRTANF 466
|
|
| TAIR|locus:2165001 SYNC1 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 5.6e-126, Sum P(2) = 5.6e-126
Identities = 173/287 (60%), Positives = 208/287 (72%)
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+PK KDG ID+S+DFF + AFLTVSGQL ETYA ALSNVYTFGPTFRAENS+TSRHLAE
Sbjct: 291 LPK-KDGNIDYSKDFFGRQAFLTVSGQLQVETYACALSNVYTFGPTFRAENSHTSRHLAE 349
Query: 267 FWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLST 326
FWM+EPE+AFADL+DDM CA AY++ Y C ++L+ C DM+ + G IDRL
Sbjct: 350 FWMVEPEIAFADLEDDMNCAEAYVK-YMC---NWLLEKCYADMELMAKNFDSGCIDRLKL 405
Query: 327 VAERDFVQLSYTDAIELLIKAK---KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD 383
VA F +++YT AIELL +A K+F+ V+WG DL SEHERYLTE F P+IV +
Sbjct: 406 VASTPFGRITYTKAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQK-PLIVYN 464
Query: 384 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYW 443
YPK IKAFYMR NDD +TVAAMD+LVP++GELIGGSQ L + Y
Sbjct: 465 YPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELIGGSQREERYDVIKKRIEEMGLPIEPYE 524
Query: 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
WYLDLR YG+V H GFGLGFER++ FATG++NIRD IPFPR PG +
Sbjct: 525 WYLDLRRYGTVKHCGFGLGFERMILFATGLDNIRDVIPFPRYPGKAD 571
|
|
| UNIPROTKB|P0A8M0 asnS "asparaginyl-tRNA synthetase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 244/472 (51%), Positives = 314/472 (66%)
Query: 23 EGLDRVGLMIVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+G V + V GWVRT R +++ ++F+ V DGSC +Q V+ + Y++ L T
Sbjct: 11 QGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRL-T 69
Query: 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVG-KSDP-SYPIQKKRVSREFLRTKAHLRP 139
TG S+ + G VV S G Q+ E++ +K+ + G DP +YP+ KR S E+LR AHLRP
Sbjct: 70 TGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRP 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
RTN GAVARVR+ LA A H+FF E GF W+S+P+ITASD EGAGE F V+TL
Sbjct: 130 RTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTL------- 182
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
++ +P+ G +D+ +DFF K +FLTVSGQLN ETYA ALS +YTFGPTFRAENSN
Sbjct: 183 ---DLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSN 239
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKG 319
TSRHLAEFWM+EPE+AFA+L D A A L+ + +L+ +DM FF ++K
Sbjct: 240 TSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYV----FKAVLEERADDMKFFAERVDKD 295
Query: 320 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 379
+ RL E DF Q+ YTDA+ +L +KFE V WG DL SEHERYL EE F PV
Sbjct: 296 AVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKA-PV 354
Query: 380 IVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNR 439
+V +YPK+IKAFYMR N+DG+TVAAMD+L P IGE+IGGSQ LN+
Sbjct: 355 VVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNK 414
Query: 440 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
+ YWWY DLR YG+VPH+GFGLGFERL+ + TGV+N+RD IPFPRTP + F
Sbjct: 415 EDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF 466
|
|
| TIGR_CMR|CPS_2591 CPS_2591 "asparaginyl-tRNA synthetase" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1202 (428.2 bits), Expect = 3.1e-122, P = 3.1e-122
Identities = 238/463 (51%), Positives = 313/463 (67%)
Query: 32 IVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
I + GW+RT R +++ ++F+ ++DGSC +Q ++ ++ + Y+ L TTG S+ + G
Sbjct: 20 ITIHGWIRTRRDSKAGISFLALHDGSCFDAIQAIVPNELDNYESDVLKL-TTGCSVKVTG 78
Query: 91 NVVPSQGSKQKVELKVNKIVLVG-KSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+V S G Q E++ ++ ++G DP +YP+ KR S EFLR +AHLRPRTN GAV
Sbjct: 79 ILVESPGKGQAFEIQATEVEVLGFVEDPDTYPMAAKRHSIEFLREQAHLRPRTNIGGAVT 138
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVRN LA A H+F G+ WIS+P+IT SDCEGAGE F V+TL ++ +P
Sbjct: 139 RVRNCLAQAVHRFLHSKGYFWISTPLITGSDCEGAGEMFRVSTL----------DMENLP 188
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
+ +G +D+++DFF K FLTVSGQLN ETY ALS VYTFGPTFRAENSNT+RHLAEFW
Sbjct: 189 RNDEGKVDYNKDFFGKETFLTVSGQLNVETYCNALSKVYTFGPTFRAENSNTTRHLAEFW 248
Query: 269 MIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 328
M+EPE+AFADL D A L+ + +L+ +DM FF ++K ++DRL++V
Sbjct: 249 MVEPEIAFADLSDAADLAEEMLKYV----FKAVLEERPDDMAFFQQRVDKTVLDRLNSVI 304
Query: 329 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 388
DFV+L YTDAI +L KKFE V WG DL SEHERYL EE F G PV++ +YPK+I
Sbjct: 305 NTDFVRLDYTDAITILENCGKKFENQVSWGVDLNSEHERYLAEEHFNG-PVVLQNYPKDI 363
Query: 389 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDL 448
K+FYMR NDDG+TVAAMD+L P IGE+IGGSQ L+ Y WY DL
Sbjct: 364 KSFYMRLNDDGKTVAAMDILAPGIGEIIGGSQREERLDVLDSRLEEMGLDIADYGWYRDL 423
Query: 449 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
R YG+VPH+GFGLGFERLV +ATG++N+RD IPFPRTP + F
Sbjct: 424 RRYGTVPHSGFGLGFERLVAYATGMQNVRDVIPFPRTPNNAAF 466
|
|
| TIGR_CMR|GSU_1156 GSU_1156 "asparaginyl-tRNA synthetase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
Identities = 237/412 (57%), Positives = 293/412 (71%)
Query: 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRP 139
I TGA++ ++G V S + Q VEL K+V+VG +D YP+QKKR + E+LRT AHLRP
Sbjct: 66 IGTGAAVAVRGIVAESPAAGQAVELHATKVVVVGGADEQYPLQKKRHTFEYLRTIAHLRP 125
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
R+NTFGAV RVR++LA A H+FF E GF+++ +PIIT SDCEGAGE F VTTL PS+
Sbjct: 126 RSNTFGAVFRVRSSLAQAVHRFFAERGFLYVHTPIITTSDCEGAGELFRVTTLDPSA--- 182
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
P DG +D+SQDFF A LTVSGQL E +A A S++YTFGPTFRAENSN
Sbjct: 183 --------PPMADGAVDFSQDFFAAQAGLTVSGQLEGELFAQAFSDIYTFGPTFRAENSN 234
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKG 319
T RH AEFWMIEPE+AFADL+DD A A + + Y C R++LDNC EDM FFN +++G
Sbjct: 235 TPRHAAEFWMIEPEMAFADLRDDAALAEDFFR-YLC---RHVLDNCAEDMAFFNEHVDRG 290
Query: 320 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 379
++ R+ VA F + Y AIE L +A FE+ V+WG DLQ+EHERYLTE+ GG PV
Sbjct: 291 LLARVEQVAGSSFAMMEYGVAIEHLKRAAVPFEYPVEWGLDLQTEHERYLTEQVVGG-PV 349
Query: 380 IVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNR 439
V +YP+EIKAFYMR+NDDGRTVAAMD+LVP++GE+IGGSQ +
Sbjct: 350 FVVNYPQEIKAFYMRRNDDGRTVAAMDLLVPKVGEIIGGSQREERYDLLESRMREGGIAP 409
Query: 440 DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
+S WWYLD R +GS PHAGFGLGFERL+ + TG+ENIRD IPFPRTP EF
Sbjct: 410 ESLWWYLDSRRWGSTPHAGFGLGFERLIMYLTGMENIRDVIPFPRTPRHAEF 461
|
|
| UNIPROTKB|Q9KSF9 asnS "Asparagine--tRNA ligase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 241/463 (52%), Positives = 307/463 (66%)
Query: 32 IVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ V GW+RT R +++ ++F+ + DGSC + +Q V+ ++ YD L TTG S+ + G
Sbjct: 20 VTVRGWIRTRRDSKAGISFLAIYDGSCFNPIQAVVPNNLNNYDNEVLKL-TTGCSVEVTG 78
Query: 91 NVVPSQGSKQKVELKVNKIVLVG--KSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+V S S Q EL + + +VG + +YP+ K R S E+LR AHLRPRTN GAVA
Sbjct: 79 KIVESPASGQAFELAASDVKVVGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVA 138
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVRN LA A H+F+ E G+ W+S+P+ITASD EGAGE F V+TL ++ +P
Sbjct: 139 RVRNCLAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTL----------DMENLP 188
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
+T G +D++QDFF K FLTVSGQLNAE YA A+S VYTFGPTFRAENSNTSRHLAEFW
Sbjct: 189 RTDAGKVDYNQDFFGKETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFW 248
Query: 269 MIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 328
M+EPE+AFADL A L+ + +L ++D++FFN I +I RL
Sbjct: 249 MVEPEVAFADLNTVAKLAEDMLKYV----FKAVLAERRDDLEFFNDRINNEVIARLEQFV 304
Query: 329 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 388
E DF Q+ YTDAIE+L K FEF V+WG DL SEHER+L EE F PVIV +YPK+I
Sbjct: 305 ESDFAQVDYTDAIEILKNCGKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDI 363
Query: 389 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDL 448
KAFYMR N+DG+TVAAMD+L P IGE+IGGSQ ++ + WY DL
Sbjct: 364 KAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDL 423
Query: 449 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
R YG+VPHAGFGLGFERLV + TG+ N+RD IPFPRTP S F
Sbjct: 424 RRYGTVPHAGFGLGFERLVSYVTGMGNVRDVIPFPRTPRSASF 466
|
|
| TIGR_CMR|VC_1297 VC_1297 "asparaginyl-tRNA synthetase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 1187 (422.9 bits), Expect = 1.2e-120, P = 1.2e-120
Identities = 241/463 (52%), Positives = 307/463 (66%)
Query: 32 IVVAGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90
+ V GW+RT R +++ ++F+ + DGSC + +Q V+ ++ YD L TTG S+ + G
Sbjct: 20 VTVRGWIRTRRDSKAGISFLAIYDGSCFNPIQAVVPNNLNNYDNEVLKL-TTGCSVEVTG 78
Query: 91 NVVPSQGSKQKVELKVNKIVLVG--KSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVA 148
+V S S Q EL + + +VG + +YP+ K R S E+LR AHLRPRTN GAVA
Sbjct: 79 KIVESPASGQAFELAASDVKVVGWVEDADTYPMAKTRHSIEYLREVAHLRPRTNVIGAVA 138
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
RVRN LA A H+F+ E G+ W+S+P+ITASD EGAGE F V+TL ++ +P
Sbjct: 139 RVRNCLAQAIHRFYHEQGYFWVSAPLITASDAEGAGEMFRVSTL----------DMENLP 188
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
+T G +D++QDFF K FLTVSGQLNAE YA A+S VYTFGPTFRAENSNTSRHLAEFW
Sbjct: 189 RTDAGKVDYNQDFFGKETFLTVSGQLNAEAYACAISKVYTFGPTFRAENSNTSRHLAEFW 248
Query: 269 MIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 328
M+EPE+AFADL A L+ + +L ++D++FFN I +I RL
Sbjct: 249 MVEPEVAFADLNTVAKLAEDMLKYV----FKAVLAERRDDLEFFNDRINNEVIARLEQFV 304
Query: 329 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 388
E DF Q+ YTDAIE+L K FEF V+WG DL SEHER+L EE F PVIV +YPK+I
Sbjct: 305 ESDFAQVDYTDAIEILKNCGKTFEFPVEWGIDLASEHERFLAEEHFKA-PVIVKNYPKDI 363
Query: 389 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYWWYLDL 448
KAFYMR N+DG+TVAAMD+L P IGE+IGGSQ ++ + WY DL
Sbjct: 364 KAFYMRMNEDGKTVAAMDVLAPGIGEIIGGSQREERLDILDARMREFGIDPEHMDWYRDL 423
Query: 449 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
R YG+VPHAGFGLGFERLV + TG+ N+RD IPFPRTP S F
Sbjct: 424 RRYGTVPHAGFGLGFERLVSYVTGMGNVRDVIPFPRTPRSASF 466
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| TIGR_CMR|BA_4802 BA_4802 "asparaginyl-tRNA synthetase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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Score = 1139 (406.0 bits), Expect = 1.5e-115, P = 1.5e-115
Identities = 221/408 (54%), Positives = 291/408 (71%)
Query: 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNT 143
+S+ ++G V+ + G+KQ E+K KI + G SD YP+QKKR + E+LRT AHLRPRTN
Sbjct: 71 SSVKVEGKVIATPGAKQPFEIKAEKIDIEGLSDSDYPLQKKRHTFEYLRTIAHLRPRTNA 130
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESP 203
F A RVR+ A+A H+FFQE GF+ + +PIIT SD EGAGE F VTT
Sbjct: 131 FSATFRVRSIAAFAIHQFFQERGFVHVHTPIITGSDTEGAGEMFRVTT----------QD 180
Query: 204 VDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRH 263
++ +PK +DG +D S+DFF K LTVSGQLNAE YA A +VYTFGPTFRAENSNT+RH
Sbjct: 181 LNNVPKGEDGQVDESKDFFGKETNLTVSGQLNAEAYALAFRDVYTFGPTFRAENSNTTRH 240
Query: 264 LAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDR 323
AEFWM+EPE+AFA+L D M L+ Y+ ++Y+L++ E+M+FFN++++K +++R
Sbjct: 241 AAEFWMVEPEIAFAELGDVMNLTEDMLK-YA---MKYVLEHAPEEMEFFNSFVDKTVLER 296
Query: 324 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD 383
++ V DF +++YT+AI++L ++ F++ V+WG DLQ+EHERYL+EE F PV V+D
Sbjct: 297 MNNVINSDFGRITYTEAIKVLQESGADFKYPVEWGIDLQTEHERYLSEEIFKR-PVFVTD 355
Query: 384 YPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQXXXXXXXXXXXXXXXKLNRDSYW 443
YPK+IKAFYMR NDDG+TVAA D+LVP IGELIGGSQ +N + YW
Sbjct: 356 YPKDIKAFYMRLNDDGKTVAATDLLVPGIGELIGGSQREERMDVLVDRIKELGMNEEDYW 415
Query: 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
WYL+LR YG HAGFGLGFER + + TG+ NIRD IPFPRTPGS EF
Sbjct: 416 WYLELRKYGGTKHAGFGLGFERFLMYITGMANIRDVIPFPRTPGSSEF 463
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| A3D3V7 | SYN_SHEB5 | 6, ., 1, ., 1, ., 2, 2 | 0.5593 | 0.9226 | 0.9721 | yes | no |
| O48593 | SYNO_ARATH | 6, ., 1, ., 1, ., 2, 2 | 0.8207 | 0.9918 | 0.8589 | yes | no |
| B1XKH1 | SYN_SYNP2 | 6, ., 1, ., 1, ., 2, 2 | 0.5509 | 0.9042 | 0.9652 | yes | no |
| P43829 | SYN_HAEIN | 6, ., 1, ., 1, ., 2, 2 | 0.5422 | 0.9409 | 0.9892 | yes | no |
| A1S684 | SYN_SHEAM | 6, ., 1, ., 1, ., 2, 2 | 0.5674 | 0.9083 | 0.9570 | yes | no |
| Q5QZ13 | SYN_IDILO | 6, ., 1, ., 1, ., 2, 2 | 0.5637 | 0.9042 | 0.9527 | yes | no |
| A3QE68 | SYN_SHELP | 6, ., 1, ., 1, ., 2, 2 | 0.5619 | 0.9103 | 0.9592 | yes | no |
| A1RK52 | SYN_SHESW | 6, ., 1, ., 1, ., 2, 2 | 0.5550 | 0.9226 | 0.9721 | yes | no |
| Q24MK1 | SYN_DESHY | 6, ., 1, ., 1, ., 2, 2 | 0.5655 | 0.8981 | 0.9524 | yes | no |
| P52276 | SYN_SYNY3 | 6, ., 1, ., 1, ., 2, 2 | 0.5835 | 0.9022 | 0.9588 | N/A | no |
| A8FVU8 | SYN_SHESH | 6, ., 1, ., 1, ., 2, 2 | 0.5534 | 0.9103 | 0.9592 | yes | no |
| Q97E56 | SYN_CLOAB | 6, ., 1, ., 1, ., 2, 2 | 0.5399 | 0.9083 | 0.9632 | yes | no |
| Q0HUL3 | SYN_SHESR | 6, ., 1, ., 1, ., 2, 2 | 0.5550 | 0.9226 | 0.9721 | yes | no |
| A5G5R2 | SYN_GEOUR | 6, ., 1, ., 1, ., 2, 2 | 0.5677 | 0.9103 | 0.9696 | yes | no |
| A0PY64 | SYN_CLONN | 6, ., 1, ., 1, ., 2, 2 | 0.5593 | 0.9083 | 0.9632 | yes | no |
| Q0HIB6 | SYN_SHESM | 6, ., 1, ., 1, ., 2, 2 | 0.5529 | 0.9226 | 0.9721 | yes | no |
| A7GB01 | SYN_CLOBL | 6, ., 1, ., 1, ., 2, 2 | 0.55 | 0.9022 | 0.9568 | yes | no |
| A3DBI2 | SYN_CLOTH | 6, ., 1, ., 1, ., 2, 2 | 0.5592 | 0.9429 | 0.9978 | yes | no |
| B0JN99 | SYN_MICAN | 6, ., 1, ., 1, ., 2, 2 | 0.5826 | 0.8900 | 0.9625 | yes | no |
| Q3IGU4 | SYN_PSEHT | 6, ., 1, ., 1, ., 2, 2 | 0.5529 | 0.9022 | 0.9526 | yes | no |
| Q72G53 | SYN_DESVH | 6, ., 1, ., 1, ., 2, 2 | 0.5646 | 0.8981 | 0.9566 | yes | no |
| P58692 | SYN_NOSS1 | 6, ., 1, ., 1, ., 2, 2 | 0.5780 | 0.9164 | 0.9719 | yes | no |
| P58693 | SYN_CLOPE | 6, ., 1, ., 1, ., 2, 2 | 0.5488 | 0.9022 | 0.9526 | yes | no |
| A5UF16 | SYN_HAEIG | 6, ., 1, ., 1, ., 2, 2 | 0.5443 | 0.9409 | 0.9892 | yes | no |
| A4Y6E4 | SYN_SHEPC | 6, ., 1, ., 1, ., 2, 2 | 0.5550 | 0.9226 | 0.9721 | yes | no |
| A6WMP4 | SYN_SHEB8 | 6, ., 1, ., 1, ., 2, 2 | 0.5593 | 0.9226 | 0.9721 | yes | no |
| Q9CN06 | SYN_PASMU | 6, ., 1, ., 1, ., 2, 2 | 0.5381 | 0.9409 | 0.9892 | yes | no |
| A1V9B8 | SYN_DESVV | 6, ., 1, ., 1, ., 2, 2 | 0.5670 | 0.9022 | 0.9609 | yes | no |
| Q12MT5 | SYN_SHEDO | 6, ., 1, ., 1, ., 2, 2 | 0.5588 | 0.9124 | 0.9613 | yes | no |
| A5HZE1 | SYN_CLOBH | 6, ., 1, ., 1, ., 2, 2 | 0.5543 | 0.9022 | 0.9568 | yes | no |
| A0KXL6 | SYN_SHESA | 6, ., 1, ., 1, ., 2, 2 | 0.5487 | 0.9226 | 0.9721 | yes | no |
| Q0SQ51 | SYN_CLOPS | 6, ., 1, ., 1, ., 2, 2 | 0.5488 | 0.9022 | 0.9526 | yes | no |
| Q8DG51 | SYN_THEEB | 6, ., 1, ., 1, ., 2, 2 | 0.5944 | 0.9144 | 0.9718 | yes | no |
| Q081Q0 | SYN_SHEFN | 6, ., 1, ., 1, ., 2, 2 | 0.5548 | 0.9185 | 0.9678 | yes | no |
| Q8EEZ1 | SYN_SHEON | 6, ., 1, ., 1, ., 2, 2 | 0.5529 | 0.9226 | 0.9721 | yes | no |
| Q74E08 | SYN_GEOSL | 6, ., 1, ., 1, ., 2, 2 | 0.5539 | 0.9348 | 0.9956 | yes | no |
| Q73P19 | SYN_TREDE | 6, ., 1, ., 1, ., 2, 2 | 0.5617 | 0.9205 | 0.9556 | yes | no |
| Q6MEC9 | SYN_PARUW | 6, ., 1, ., 1, ., 2, 2 | 0.5933 | 0.9470 | 0.9957 | yes | no |
| A7FRK8 | SYN_CLOB1 | 6, ., 1, ., 1, ., 2, 2 | 0.5543 | 0.9022 | 0.9568 | yes | no |
| Q899M9 | SYN_CLOTE | 6, ., 1, ., 1, ., 2, 2 | 0.5394 | 0.9409 | 0.9978 | yes | no |
| A6LPI6 | SYN_CLOB8 | 6, ., 1, ., 1, ., 2, 2 | 0.55 | 0.9022 | 0.9547 | yes | no |
| B0TUU1 | SYN_SHEHH | 6, ., 1, ., 1, ., 2, 2 | 0.5588 | 0.9124 | 0.9613 | yes | no |
| Q0TMF3 | SYN_CLOP1 | 6, ., 1, ., 1, ., 2, 2 | 0.5488 | 0.9022 | 0.9526 | yes | no |
| Q0I2M9 | SYN_HAES1 | 6, ., 1, ., 1, ., 2, 2 | 0.5481 | 0.9124 | 0.9593 | yes | no |
| A5UCB9 | SYN_HAEIE | 6, ., 1, ., 1, ., 2, 2 | 0.5402 | 0.9409 | 0.9892 | yes | no |
| A9KZ30 | SYN_SHEB9 | 6, ., 1, ., 1, ., 2, 2 | 0.5572 | 0.9226 | 0.9721 | yes | no |
| A5N4F7 | SYN_CLOK5 | 6, ., 1, ., 1, ., 2, 2 | 0.5326 | 0.9022 | 0.9568 | yes | no |
| B2UXS0 | SYN_CLOBA | 6, ., 1, ., 1, ., 2, 2 | 0.55 | 0.9022 | 0.9547 | yes | no |
| Q8RH70 | SYN_FUSNN | 6, ., 1, ., 1, ., 2, 2 | 0.5334 | 0.9389 | 1.0 | yes | no |
| B2TI01 | SYN_CLOBB | 6, ., 1, ., 1, ., 2, 2 | 0.55 | 0.9022 | 0.9547 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 6.1.1.22 | 0.979 |
| 3rd Layer | 6.1.1 | 0.983 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | gw1.VII.776.1 | asparaginyl-tRNA synthetase (EC-6.1.1.22) (571 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | fgenesh4_pg.C_LG_VIII001519 | glutamyl-tRNA(Gln) amidotransferase (EC-6.3.5.7) (506 aa) | • | 0.899 | |||||||
 | eugene3.00180130 | hypothetical protein (141 aa) | • | 0.899 | |||||||
 | estExt_fgenesh4_pm.C_LG_X0145 | glutamyl-tRNA(Gln) amidotransferase (529 aa) | • | 0.899 | |||||||
 | gw1.XI.1444.1 | aminoacyl-tRNA ligase (EC-6.1.1.4) (889 aa) | • | • | 0.597 | ||||||
 | eugene3.114390001 | Predicted protein (351 aa) | • | 0.412 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 491 | |||
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 0.0 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 0.0 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 0.0 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 0.0 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 0.0 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 1e-167 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 1e-151 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 1e-142 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 3e-75 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 2e-72 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 2e-50 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 7e-49 | |
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 5e-32 | |
| cd04318 | 82 | cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-termina | 4e-30 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 1e-26 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 3e-23 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 9e-16 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 1e-13 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 2e-12 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 1e-08 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 1e-08 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 3e-08 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 7e-08 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 2e-07 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 7e-07 | |
| cd04323 | 84 | cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-t | 1e-06 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 3e-06 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 1e-05 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 1e-05 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 3e-05 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 5e-05 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 6e-05 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 3e-04 | |
| cd04320 | 102 | cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, a | 9e-04 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 0.003 | |
| cd04319 | 103 | cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-termina | 0.004 |
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 989 bits (2558), Expect = 0.0
Identities = 424/490 (86%), Positives = 451/490 (92%), Gaps = 4/490 (0%)
Query: 2 GSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNM 61
G VGEFRKKL+I DVKGG +EGL RVG + V GWVRTLRAQSSVTFIEVNDGSCLSNM
Sbjct: 80 GEAVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNM 139
Query: 62 QCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121
QCVMT DAEGYDQV+SGLITTGAS+ +QG VV SQG KQKVELKV+KIV+VGKSDPSYPI
Sbjct: 140 QCVMTPDAEGYDQVESGLITTGASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPI 199
Query: 122 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181
QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGF+W+SSPIITASDCE
Sbjct: 200 QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYAT 241
GAGEQFCVTTLIP+S E S VD IPKTKDGLIDWSQDFF KPAFLTVSGQLN ETYAT
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYAT 319
Query: 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYI 301
ALS+VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL DDMACATAYLQ V+YI
Sbjct: 320 ALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYV----VKYI 375
Query: 302 LDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 361
L+NCKEDM+FFNTWIEKGIIDRLS V E++FVQLSYTDAIELL+KAKKKFEF VKWG DL
Sbjct: 376 LENCKEDMEFFNTWIEKGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDL 435
Query: 362 QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQR 421
QSEHERY+TEEAFGG PVI+ DYPKEIKAFYMR+NDDG+TVAAMDMLVPR+GELIGGSQR
Sbjct: 436 QSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVAAMDMLVPRVGELIGGSQR 495
Query: 422 EERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 481
EERLEYLE RLDELKLN++SYWWYLDLR YGSVPHAGFGLGFERLVQFATG++NIRDAIP
Sbjct: 496 EERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIP 555
Query: 482 FPRTPGSVEF 491
FPR PGS EF
Sbjct: 556 FPRVPGSAEF 565
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Length = 565 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 773 bits (1999), Expect = 0.0
Identities = 274/482 (56%), Positives = 339/482 (70%), Gaps = 33/482 (6%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA 69
++ I D+ G VG + V GWVRT R + F+++ DGSC +Q V +
Sbjct: 2 MRVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCFKQLQVVKDNGE 56
Query: 70 EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE 129
E ++++K +TTG+S+ + G VV S + Q EL+ KI ++G+ YPIQKKR S E
Sbjct: 57 EYFEEIKK--LTTGSSVIVTGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIE 114
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPRTN FGAV R+RN LA A H+FF ENGF+W+ +PIITASDCEGAGE F V
Sbjct: 115 FLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRV 174
Query: 190 TTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249
TTL D+S+DFF K A+LTVSGQL AE YA AL VYTF
Sbjct: 175 TTLDL---------------------DFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTF 213
Query: 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDM 309
GPTFRAENSNT RHLAEFWMIEPE+AFADL+D+M A L+ Y V+Y+L+NC +D+
Sbjct: 214 GPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLK-YV---VKYVLENCPDDL 269
Query: 310 DFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 369
+F N ++KG I+RL E F +++YT+AIE+L K+ KKFEF V+WG DL SEHERYL
Sbjct: 270 EFLNRRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYL 329
Query: 370 TEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLE 429
EE F PV V++YPK+IKAFYMR N DG+TVAAMD+L P IGE+IGGSQREERL+ LE
Sbjct: 330 AEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLLAPGIGEIIGGSQREERLDVLE 388
Query: 430 GRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489
R+ EL LN++ YWWYLDLR YGSVPH+GFGLGFERLV + TG++NIRD IPFPRTPG
Sbjct: 389 ARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGRA 448
Query: 490 EF 491
EF
Sbjct: 449 EF 450
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Length = 450 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 620 bits (1600), Expect = 0.0
Identities = 253/465 (54%), Positives = 327/465 (70%), Gaps = 27/465 (5%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + V+GWVRT R+ + F+E+NDGS L +Q V+ + Y +TTG+S+
Sbjct: 15 VGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKSLTTGSSVS 74
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGA 146
+ G VV S G Q VEL+V KI +VG+++P YP+QKK S EFLR AHLR RTNT GA
Sbjct: 75 VTGKVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGA 134
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V RVRNAL+ A H++FQENGF W+S PI+T++DCEGAGE F
Sbjct: 135 VMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEGAGELF------------------- 175
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAE 266
+ G ID+SQDFF K A+LTVSGQL ETYA ALS VYTFGPTFRAE SNTSRHL+E
Sbjct: 176 --RVSTGNIDFSQDFFGKEAYLTVSGQLYLETYALALSKVYTFGPTFRAEKSNTSRHLSE 233
Query: 267 FWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLST 326
FWMIEPE+AFA+L D + A ++ Y ++ +L+NC +++ F +K +I RL
Sbjct: 234 FWMIEPEMAFANLNDLLQLAETLIK-YI---IKAVLENCSQELKFLEKNFDKDLIKRLEN 289
Query: 327 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 386
+ F +++YTDAIE+L ++ K FE+ WG DLQ+EHER+L EE F PV V++YPK
Sbjct: 290 IINNKFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFKP-PVFVTNYPK 348
Query: 387 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYL 446
+IKAFYM+ NDDG+TVAAMD+L P IGE+IGGS+RE+ L+ LE R+ E+ L+ D+ WYL
Sbjct: 349 DIKAFYMKLNDDGKTVAAMDLLAPGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYL 408
Query: 447 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
DLR YGSVPH+GFGLGFERL+ + TG+ENIRDAIPFPRTPG++ F
Sbjct: 409 DLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNINF 453
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 538 bits (1388), Expect = 0.0
Identities = 204/486 (41%), Positives = 274/486 (56%), Gaps = 53/486 (10%)
Query: 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTS 67
K+ I D+K P+ G V V GWV R + F+ + DGS +Q V+
Sbjct: 1 MMKRTYIKDIK--PHVGGQEV----TVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPK 52
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS 127
+ + K+ +T +S+ + G V S + Q EL+V KI ++G++DP YPI KK S
Sbjct: 53 NKVYEELFKAKKLTLESSVVVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHS 112
Query: 128 R-EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
E L HL RT AV ++R+++ A +FF ENGF + +PIITAS EG GE
Sbjct: 113 ELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGGGEL 172
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246
F V D+F+K A+LT S QL E A AL V
Sbjct: 173 FKV------------------------------DYFDKEAYLTQSPQLYKEALAAALERV 202
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK 306
+T GPTFRAE SNT RHL+EFWM++PE+AFADL D M A ++ Y + +L+ C
Sbjct: 203 FTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIK-YL---FKKVLEECA 258
Query: 307 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHE 366
++++F + L F +++Y +AIE+L +K FE V+WG DL +EHE
Sbjct: 259 DELEFLGRDNSE-----LKRPESAPFPRITYKEAIEIL--EEKGFEK-VEWGDDLGTEHE 310
Query: 367 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERL 425
RYL EE F PV V++YPKEIK FYMR + D TVA+ D+L P GE+IGGSQRE
Sbjct: 311 RYLGEEYFKP-PVFVTNYPKEIKPFYMRPDPDNPGTVASFDLLAPGGGEIIGGSQREHDY 369
Query: 426 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
+ L R+ E L+ +SY WYLDLR YG PHAGFGLG ERLV + G++NIR+AIPFPR
Sbjct: 370 DLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPRD 429
Query: 486 PGSVEF 491
PG +
Sbjct: 430 PGRLYP 435
|
Length = 435 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 518 bits (1336), Expect = 0.0
Identities = 265/555 (47%), Positives = 349/555 (62%), Gaps = 80/555 (14%)
Query: 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCV 64
+F ++ I + P+ G G + + GWV+T R Q + F+EVNDGSC +N+Q +
Sbjct: 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVM 87
Query: 65 MTSDAEGYDQVKSGLITTGASIWIQGNV-VP--SQGSKQKVELKVNKIVLVGKSDPS-YP 120
+ D+ YD S L+ TG + + G + VP +G+KQK+EL V K++ VG DP+ YP
Sbjct: 88 V--DSSLYDL--STLVATGTCVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYP 143
Query: 121 IQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPII----- 175
+ K +++ EFLR HLR RTN+ AVAR+RNALA+ATH FFQE+ F++I +PII
Sbjct: 144 LPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHSFFQEHSFLYIHTPIITTSDC 203
Query: 176 -----------------------------TASDCEGA-------GEQFCVTTLIPSSREA 199
T +D E A GE +S+E
Sbjct: 204 EGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEE 263
Query: 200 AESPV--------------------DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY 239
+ V +PK KDG ID+S+DFF + AFLTVSGQL ETY
Sbjct: 264 ITAAVAELKIAKESLAHIEERSKLKPGLPK-KDGKIDYSKDFFGRQAFLTVSGQLQVETY 322
Query: 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVR 299
A ALS+VYTFGPTFRAENS+TSRHLAEFWM+EPE+AFADL+DDM CA AY++ Y C +
Sbjct: 323 ACALSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFADLEDDMNCAEAYVK-YMC---K 378
Query: 300 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA---KKKFEFLVK 356
++LD C +DM+ + G IDRL VA F +++YT+AIELL +A K+F+ V+
Sbjct: 379 WLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAIELLEEAVAKGKEFDNNVE 438
Query: 357 WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELI 416
WG DL SEHERYLTE F P+IV +YPK IKAFYMR NDD +TVAAMD+LVP++GELI
Sbjct: 439 WGIDLASEHERYLTEVLFQK-PLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELI 497
Query: 417 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 476
GGSQREER + ++ R++E+ L + Y WYLDLR YG+V H GFGLGFER++ FATG++NI
Sbjct: 498 GGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNI 557
Query: 477 RDAIPFPRTPGSVEF 491
RD IPFPR PG +
Sbjct: 558 RDVIPFPRYPGKADL 572
|
Length = 572 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 484 bits (1247), Expect = e-167
Identities = 242/515 (46%), Positives = 322/515 (62%), Gaps = 59/515 (11%)
Query: 28 VGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGA 84
+ +I V GW + +R Q F+ +NDGSC N+Q ++ E Y+++ K G+ G
Sbjct: 80 IDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLKCGV---GC 136
Query: 85 SIWIQGNVV--PSQGS------KQKVELKVN-----KIVLVGKS-DPS-YPIQKKRVSRE 129
G ++ P Q K+ VEL + + G++ DP YP+ KK +E
Sbjct: 137 CFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKE 196
Query: 130 FLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCV 189
FLR AHLRPR+ +V R+RNALA ATH FFQ GF++I +P+IT SDCEG GE F V
Sbjct: 197 FLREVAHLRPRSYFISSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTV 256
Query: 190 TTL---------IPSSR-----------------------EAAESPVDAIPKTKDG-LID 216
TTL IP ++ S + P D LID
Sbjct: 257 TTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNANNNNGNSSSSNAVSSPAYPDQYLID 316
Query: 217 WSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276
+ +DFF K AFLTVSGQL+ E +++ +VYTFGPTFRAENS+TSRHLAEFWMIEPE+AF
Sbjct: 317 YKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIEPEIAF 376
Query: 277 ADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLS 336
ADL D+M A +Y++ C + Y+L+N +D+ +F +E G+I RL + + DF +++
Sbjct: 377 ADLYDNMELAESYIKY--C--IGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKIT 432
Query: 337 YTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN 396
YT+ I+LL FE VKWG DLQSEHER++ E+ F PVIV +YPK++KAFYM+ N
Sbjct: 433 YTNVIDLLQPYSDSFEVPVKWGMDLQSEHERFVAEQIFKK-PVIVYNYPKDLKAFYMKLN 491
Query: 397 DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPH 456
+D +TVAAMD+LVP+IGE+IGGSQRE+ LE L+ + E KLN +SYWWY LR +GS PH
Sbjct: 492 EDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKMIKEKKLNMESYWWYRQLRKFGSHPH 551
Query: 457 AGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491
AGFGLGFERL+ TGV+NI+D IPFPR PG EF
Sbjct: 552 AGFGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586
|
Length = 586 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 445 bits (1146), Expect = e-151
Identities = 224/551 (40%), Positives = 324/551 (58%), Gaps = 79/551 (14%)
Query: 3 SKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQ 62
S+V FR K++ GG + R I + ++ SV ++ ++DGSC++++Q
Sbjct: 96 SRVPIFRSIAKVL--SGGGSTYPVREKTEIAIQ---KSAPPPPSVAYLLISDGSCVASLQ 150
Query: 63 CVMTSDAEGYDQVKSGLITTGASIWIQG---NVVPSQGSKQKVELKVNKIVLVGKSDPS- 118
V+ S Q L+ TG I +G +P+QG K +EL+V KI+ +G DP
Sbjct: 151 VVVDSALAPLTQ----LMATGTCILAEGVLKLPLPAQG-KHVIELEVEKILHIGTVDPEK 205
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
YP+ KKR+ + LR +H RPRT T +V RVR+AL +ATH FFQ++GF+++ PIIT +
Sbjct: 206 YPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQVPIITTT 265
Query: 179 DCEGAGEQFCVTTLI----------------------------------------PSSRE 198
D G GE F VTTL+ S+RE
Sbjct: 266 DATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNRE 325
Query: 199 AAESPVDAIPKT-------------------KDGLIDWSQDFFEKPAFLTVSGQLNAETY 239
A + + KT K + +S+DFF +P +LTVSG+L+ E+Y
Sbjct: 326 ALVAAEQDLRKTNQLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESY 385
Query: 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVR 299
A AL NVYTFGP FRA+ +++RHLAE WM+E E+AF++L+D M CA Y + + C +
Sbjct: 386 ACALGNVYTFGPRFRADRIDSARHLAEMWMVEVEMAFSELEDAMNCAEDYFK-FLC---K 441
Query: 300 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKA-KKKFEFLVKWG 358
++L+NC EDM F + I+K I RL + ++SYT+A++LL +A KKFE +WG
Sbjct: 442 WVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETKPEWG 501
Query: 359 CDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGG 418
L +EH YL +E + PVI+ +YPKE+K FY+R NDDG+TVAA D++VP++G +I G
Sbjct: 502 IALTTEHLSYLADEIYKK-PVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITG 560
Query: 419 SQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 478
SQ EER++ L R++EL L R+ Y WYLDLR +G+V H+GF LGFE +V FATG+ ++RD
Sbjct: 561 SQNEERMDILNARIEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRD 620
Query: 479 AIPFPRTPGSV 489
AIPFPR+ G
Sbjct: 621 AIPFPRSWGKA 631
|
Length = 633 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 411 bits (1058), Expect = e-142
Identities = 146/365 (40%), Positives = 199/365 (54%), Gaps = 45/365 (12%)
Query: 125 RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG 184
+ E L HL RT A+ R+R+ + A +F +ENGF + +P IT++D EG
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGA 60
Query: 185 EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244
E F +F KPA+L S QL E AL
Sbjct: 61 ELF------------------------------KVSYFGKPAYLAQSPQLYKEMLIAALE 90
Query: 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQVRYILD 303
VY GP FRAE SNT RHL+EFWM+E E+AF D + M ++ Y + +L+
Sbjct: 91 RVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIK-YI---FKRVLE 146
Query: 304 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 363
C ++++ N ++R F +++Y +AIELL + + E VKWG DL +
Sbjct: 147 RCAKELELVN------QLNRELLKPLEPFPRITYDEAIELLREKGVEEE--VKWGEDLST 198
Query: 364 EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQRE 422
EHER L E G PV V+DYPKEIK FYM+ +DD TV + D+L+P +GE++GGSQR
Sbjct: 199 EHERLLGEIVKGD-PVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRI 257
Query: 423 ERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 482
+ LE R+ E L+ +S+ WYLDLR YG PH GFGLG ERLV + G++NIR+AI F
Sbjct: 258 HDYDELEERIKEHGLDPESFEWYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILF 317
Query: 483 PRTPG 487
PR P
Sbjct: 318 PRDPK 322
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 239 bits (613), Expect = 3e-75
Identities = 104/384 (27%), Positives = 156/384 (40%), Gaps = 62/384 (16%)
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
S E +L R A ++R+ + A +F E GF+ + +PI+T S EG
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSN 245
F L+PS F+ K A+L S QL + A
Sbjct: 61 F----LVPSK------------------------FYAKEAYLPQSPQLYKQLLMVAGFDR 92
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305
V+ P FR E+ T RH EF ++ E++F D +D M ++Y+
Sbjct: 93 VFQIAPCFRDEDLRTDRHPPEFTQLDLEMSFVDYEDVMDLTEDL--------IKYVFKKV 144
Query: 306 KEDMDFFNTW-IEKGIIDRLSTVAER------DFVQLSYTDAIELLIKAKKKFEFLVK-- 356
+ IE R+ T AE D L + ++ + + K EF V
Sbjct: 145 LGKREELELLGIELPEFPRI-TYAEAIERYGSDKPDLRFGLELKDVTEIFKGSEFKVFAE 203
Query: 357 --------WGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDM 407
G E L ++ PV V+D+P FYM +++D D+
Sbjct: 204 AGDVVDKALGALRSELGEENLGDK-DKDNPVFVTDFPLFEHPFYMPKDEDPPGLAERFDL 262
Query: 408 LVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGF 463
++ GE+ GGS R E R +EL L+ + + +YLD YG PH G GLG
Sbjct: 263 VLN-GGEIGGGSIRIHDPEEQRKRFEELGLDPEEAEEKFGFYLDALKYGMPPHGGIGLGL 321
Query: 464 ERLVQFATGVENIRDAIPFPRTPG 487
+RLV TG+E+IR+ I FP+T
Sbjct: 322 DRLVMLLTGLESIREVIAFPKTRK 345
|
Length = 345 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 235 bits (602), Expect = 2e-72
Identities = 136/480 (28%), Positives = 212/480 (44%), Gaps = 95/480 (19%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQ 89
+ +AGWV +R + F+ + D S + +Q V+ E ++ +K + + + +
Sbjct: 19 VTLAGWVHEIRDLGGIAFLILRDRSGI--IQVVVKKKVDEELFETIK--KLKRESVVSVT 74
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL------------ 137
G V + + VE+ +I ++ K++ P+ +S + A L
Sbjct: 75 GTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLD---ISGK---VLAELDTRLDNRFLDLR 128
Query: 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197
RPR A+ ++R+ + A +F ENGF I +P I AS EG E F +
Sbjct: 129 RPRVR---AIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPI-------- 177
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY-----ATALSNVYTFGPT 252
D+FEK A+L S QL Y V+ GP
Sbjct: 178 ----------------------DYFEKEAYLAQSPQL----YKQMMVGAGFERVFEIGPV 211
Query: 253 FRAENSNTSRHLAEFWMIEPELAFADLKDD-MA---CATAYLQLYSCMQVRYILDNCKED 308
FRAE NTSRHL E+ I+ E+ F D +D M Y+ + +NC+++
Sbjct: 212 FRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYM-------YEDVAENCEKE 264
Query: 309 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY 368
++ + V E +++Y +AIE+L + + WG DL +E ER
Sbjct: 265 LELLGIELP---------VPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERL 311
Query: 369 LTEEA---FGGCPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREER 424
L E +G ++DYP E + FY M DD + D+L + E+ G QR R
Sbjct: 312 LGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDDPEISKSFDLLFRGL-EITSGGQRIHR 370
Query: 425 LEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484
+ L + E LN +S+ +YL+ YG PH GFGLG ERL G+ENIR+A+ FPR
Sbjct: 371 YDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIREAVLFPR 430
|
Length = 437 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 177 bits (451), Expect = 2e-50
Identities = 131/464 (28%), Positives = 201/464 (43%), Gaps = 64/464 (13%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGASIWIQG 90
+ GWV +R + F+ + D L +Q + + K + + + ++G
Sbjct: 15 VTFMGWVHEIRDLGGLIFVLLRDREGL--IQITAPAKKVSKNLFKWAKKLNLESVVAVRG 72
Query: 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLR---PRTNTFGAV 147
V + + E+ KI ++ ++ P+ L T+ R R T A+
Sbjct: 73 IVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAI 132
Query: 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207
R+R+ + + +F E GFI + +P + AS EG E F +T
Sbjct: 133 FRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPIT----------------- 175
Query: 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY-ATALSNVYTFGPTFRAENSNTSRHLAE 266
+FE+ AFL S QL + A VY GP FRAE NT RHL E
Sbjct: 176 -------------YFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNE 222
Query: 267 FWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILD---NCKEDMDFFNTWIEKGIIDR 323
I+ E+AF D D M + + VR D C ++ +EK
Sbjct: 223 ATSIDIEMAFEDHHDVM-------DILEELVVRVFEDVPERCAHQLETLEFKLEK----- 270
Query: 324 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD 383
E FV+L+Y +AIE+ + + WG DL +E E+ L EE G ++D
Sbjct: 271 ----PEGKFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEMDG--LYFITD 320
Query: 384 YPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSY 442
+P EI+ FY M D+ + D++ R E+ G+QR + L R+ LN + +
Sbjct: 321 WPTEIRPFYTMPDEDNPEISKSFDLMY-RDLEISSGAQRIHLHDLLVERIKAKGLNPEGF 379
Query: 443 WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486
YL+ YG PHAG+GLG ER V F G++NIR+A+ FPR
Sbjct: 380 KDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPRDR 423
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 7e-49
Identities = 96/346 (27%), Positives = 163/346 (47%), Gaps = 48/346 (13%)
Query: 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206
V +V++++ T +F GF+ + PII+ T P ++ PV
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISP-----------STD--PLMGLGSDLPVKQ 75
Query: 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAEN--SNTSRHL 264
I S DF+ +L S L+ + L ++ P FR E +T RHL
Sbjct: 76 I----------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHL 125
Query: 265 AEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRL 324
EF ++ E+ ADL + M ++ V+ +L+ +++++FF R
Sbjct: 126 YEFTQLDIEIEGADLDEVMDLIEDLIKYL----VKELLEEHEDELEFFG---------RD 172
Query: 325 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDY 384
+R F ++++ +A+E+L + + L + G SE E+ L+E P + D
Sbjct: 173 LPHLKRPFKRITHKEAVEILNEEGCRGIDLEELG----SEGEKSLSEHF--EEPFWIIDI 226
Query: 385 PKEIKAFYMRQNDDGRT--VAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDS 441
PK + FY R+ D R + D+L+P GE + G +RE E + R+ E ++ +
Sbjct: 227 PKGSREFYDRE-DPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVDPEK 285
Query: 442 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487
Y WYL++ G +P AGFG+G ERL ++ G+ +IR+ PFPR PG
Sbjct: 286 YKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPG 331
|
Length = 335 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 128 bits (323), Expect = 5e-32
Identities = 124/506 (24%), Positives = 205/506 (40%), Gaps = 103/506 (20%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI----- 80
+ G +++ G V T+R + F+ + +QCV+ V G++
Sbjct: 78 ELAGSEVLIRGRVHTIRGKGKSAFLVLR--QSGFTVQCVVFVSE---VTVSKGMVKYAKQ 132
Query: 81 -TTGASIWIQGNVV----PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR------- 128
+ + + ++G V P +G+ Q+VE++V KI V K+ + P + +R
Sbjct: 133 LSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEK 192
Query: 129 ------EFLRTKAHLRP-------RTNTFGAVARVRNALAYATHKFFQENGFIWISSPII 175
+ +R R RT A+ R+++ + +F GF+ I +P +
Sbjct: 193 ALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKL 252
Query: 176 TASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLN 235
A EG F L D+ +PA L S QL+
Sbjct: 253 IAGASEGGSAVF---RL---------------------------DYKGQPACLAQSPQLH 282
Query: 236 AETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYS 294
+ V+ GP FRAE+S T RHL EF ++ E M Y +
Sbjct: 283 KQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLE---------MEIKEHYSE--- 330
Query: 295 CMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE----------RDFVQLSYTDAIELL 344
+LD E + + L + E ++L++ + I++L
Sbjct: 331 ------VLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQML 384
Query: 345 IKAKKKFEFLVKWGCDLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MRQNDDGR 400
+A + + L DL +E ER L +E +G I+ YP ++ FY M DD +
Sbjct: 385 KEAGVEVDPL----GDLNTESERKLGQLVKEKYGTDFYILHRYPLAVRPFYTMPCPDDPK 440
Query: 401 TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFG 460
+ D+ + R E+I G+QR E LE R +E ++ + Y+D YG+ PH GFG
Sbjct: 441 YSNSFDVFI-RGEEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAPPHGGFG 499
Query: 461 LGFERLVQFATGVENIRDAIPFPRTP 486
+G ER+V G+ NIR FPR P
Sbjct: 500 VGLERVVMLFCGLNNIRKTSLFPRDP 525
|
Length = 530 |
| >gnl|CDD|239813 cd04318, EcAsnRS_like_N, EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 4e-30
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 2/83 (2%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWVR++R ++FIE+NDGSCL N+Q V+ + + ++ ++TG+SI ++G
Sbjct: 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEIL--KLSTGSSIRVEGV 59
Query: 92 VVPSQGSKQKVELKVNKIVLVGK 114
+V S G+KQ EL+ KI ++G+
Sbjct: 60 LVKSPGAKQPFELQAEKIEVLGE 82
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. S. cerevisiae mtAsnRS can charge E.coli tRNA with asparagines. Mutations in the gene for S. cerevisiae mtAsnRS has been found to induce a "petite" phenotype typical for a mutation in a nuclear gene that results in a non-functioning mitochondrial protein synthesis system. Length = 82 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 74/341 (21%), Positives = 117/341 (34%), Gaps = 79/341 (23%)
Query: 149 RVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIP 208
+VR+ + A F + GF+ + +P++ F V
Sbjct: 2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPF---------------LVKYNA 46
Query: 209 KTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFW 268
D + S F+K L V G L V+ FR E +RH EF
Sbjct: 47 LGLDYYLRISPQLFKK--RLMVGG----------LDRVFEINRNFRNE-DLRARHQPEFT 93
Query: 269 MIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 328
M++ E+AFAD +D + L + R +L F + G
Sbjct: 94 MMDLEMAFADYEDVIELTER---LVRHL-AREVLGVTAVTYGFEL--EDFG--------- 138
Query: 329 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEI 388
F +L+Y +A+E G P+ ++DYP E+
Sbjct: 139 -LPFPRLTYREALERY-------------------------------GQPLFLTDYPAEM 166
Query: 389 KAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWW 444
+ +D +A L E+ GS R + E +N + + +
Sbjct: 167 HSPLASPHDVNPEIADAFDLFINGVEVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEF 226
Query: 445 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
YL YG PH G G+G +RL+ T IR+ I FP+
Sbjct: 227 YLKALEYGLPPHGGLGIGIDRLIMLMTNSPTIREVIAFPKM 267
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 3e-23
Identities = 127/508 (25%), Positives = 206/508 (40%), Gaps = 84/508 (16%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTG 83
+ V +++ V T R + + F+ + DGS + D E D + G I T
Sbjct: 75 ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSDSVQAMAAVEGDVPKEMIDFI--GQIPTE 132
Query: 84 ASIWIQGNVVP-----SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE--------F 130
+ + ++ V + S +ELKV KI V +S + P + SR+
Sbjct: 133 SIVDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVN 192
Query: 131 LRTKAHLR---PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
T+ + R RT GA+ R+++ + +F ++ F I SP I + EG F
Sbjct: 193 FDTRLNSRWMDLRTPASGAIFRLQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVF 252
Query: 188 CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNV 246
+ ++F + A+L S QL + + V
Sbjct: 253 KL------------------------------EYFNRFAYLAQSPQLYKQMVLQGDVPRV 282
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAF-------ADLKDDMAC------ATAYLQLY 293
+ GP FR+ENSNT RHL EF ++ E+ DL + + AT +L
Sbjct: 283 FEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATHTKELK 342
Query: 294 S-CMQVRY---ILDNCKEDMDFFNTW-IEKGIID------RLSTVAERDFVQLSYTDAIE 342
+ C Q + + E M I +G+ R+ + R ++++Y IE
Sbjct: 343 AVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSR-MLRINYMHCIE 401
Query: 343 LLIKAKKKFEFLVKWGCDLQSEHERYL---TEEAFGGCPVIVSDYPKEIKAFY-MRQNDD 398
LL E + D+ + +E+ L +E +G I +P + FY M DD
Sbjct: 402 LL---NTVLEEKMAPTDDINTTNEKLLGKLVKERYGTDFFISDRFPSSARPFYTMECKDD 458
Query: 399 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAG 458
R + DM + R E+ G+QR + L R L ++ Y+D G+ PH G
Sbjct: 459 ERFTNSYDMFI-RGEEISSGAQRIHDPDLLLARAKMLNVDLTPIKEYVDSFRLGAWPHGG 517
Query: 459 FGLGFERLVQFATGVENIRDAIPFPRTP 486
FG+G ER+V G+ N+R A FPR P
Sbjct: 518 FGVGLERVVMLYLGLSNVRLASLFPRDP 545
|
Length = 550 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 9e-16
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ +AGWV + R + FI++ DGS +Q V+ + G ++ + T + + + G
Sbjct: 2 VTLAGWVHSRRDHGGLIFIDLRDGS--GIVQVVVNKEELGEFFEEAEKLRTESVVGVTGT 59
Query: 92 VVPSQG---SKQKVELKVNKIVLVGK 114
VV + ++EL+ ++ ++ K
Sbjct: 60 VVKRPEGNLATGEIELQAEELEVLSK 85
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 1e-13
Identities = 67/266 (25%), Positives = 104/266 (39%), Gaps = 48/266 (18%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVR--YILD 303
V+ G FR E +T H EF M+E A+AD +D M ++ +V +
Sbjct: 251 VFEIGRNFRNEGIDT-THNPEFTMLEFYQAYADYEDLMDLTEELIK-ELAKEVNGTTKVT 308
Query: 304 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD--AIELLIKAKKKFEFLVKWGC-- 359
+++DF + ++D L DF L + D A EL K + E WG
Sbjct: 309 YGGQEIDFSKPFKRITMVDALKEYLGVDFDDL-FDDEEAKELAKKHGIEVEKYGTWGLGH 367
Query: 360 --DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE--- 414
+ E L E P V+D+P EI +++ P + E
Sbjct: 368 LLNELFEE---LVEAKLIQ-PTFVTDHPVEISPL-AKRHRSN----------PGLTERFE 412
Query: 415 -LIGGSQRE------------ERLEYLEGRLDELKLNRDSY----WWYLDLRHYGSVPHA 457
IGG +E ++ E E +++E + D +++ YG P
Sbjct: 413 LFIGG--KEIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPTG 470
Query: 458 GFGLGFERLVQFATGVENIRDAIPFP 483
G G+G +RLV T +IRD I FP
Sbjct: 471 GLGIGIDRLVMLLTNSPSIRDVILFP 496
|
Length = 502 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 105/503 (20%), Positives = 177/503 (35%), Gaps = 99/503 (19%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGL 79
NE L+ + + +AG + R+ TFI + D S +Q + D E + + L
Sbjct: 46 NEELEDKNIEVSIAGRIMARRSMGKATFITLQDES--GQIQLYVNKDDLPEDFYEFDEYL 103
Query: 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS-----DPSYPI--QKKRVSREFLR 132
+ G I + G P + ++ + V ++ ++ K+ D + + Q+ R + +L
Sbjct: 104 LDLGDIIGVTGY--PFKTKTGELSVHVTELQILTKALRPLPDKFHGLTDQETRYRQRYLD 161
Query: 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTL 192
+ R TF VR+ + A +F + GFI + +P++
Sbjct: 162 LIVNPDSR-QTF----LVRSKIIKAIRRFLDDRGFIEVETPMLQV--------------- 201
Query: 193 IPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETY---ATAL------ 243
IP A +P F+T L+ + Y A L
Sbjct: 202 IPGGANA------------------------RP-FITHHNALDMDLYLRIAPELYLKRLI 236
Query: 244 ----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQ-LYSCMQV 298
VY G FR E +T H EF MIE A+AD +D M + L +
Sbjct: 237 VGGFEKVYEIGRNFRNEGVDT-THNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQELLG 295
Query: 299 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 358
+ + ++DF + +++ + + E KK V
Sbjct: 296 TTKITYGELEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVA-E 354
Query: 359 CDLQSEHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR 411
L H + E F P ++ YP EI ++N L
Sbjct: 355 KSLTLGH---ILNELFEQFLEHTLIQPTFITHYPAEISPL-AKRNPSNPEFTDRFELFIA 410
Query: 412 IGELIGG--------SQREERLEYLEGRL---DELKLNRDSYWWYLDLRHYGSVPHAGFG 460
E+ QRE + + + DE + + + L+ YG P G G
Sbjct: 411 GKEIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDEDFVEALE---YGMPPTGGLG 467
Query: 461 LGFERLVQFATGVENIRDAIPFP 483
+G +RLV T ++IRD I FP
Sbjct: 468 IGIDRLVMLLTDSKSIRDVILFP 490
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 4/76 (5%)
Query: 414 ELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 469
EL GGS R E + + L ++ R+ + + L+ YG+ PHAGF LG +RL+
Sbjct: 478 ELGGGSIRIHDPEVQKKVFEILGIDPEEAREKFGFLLEAFKYGTPPHAGFALGLDRLMML 537
Query: 470 ATGVENIRDAIPFPRT 485
TG +NIRD I FP+T
Sbjct: 538 LTGTDNIRDVIAFPKT 553
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 1e-08
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 414 ELIGGSQREERLEYLEGRLDELKLNRDSYW----WYLDLRHYGSVPHAGFGLGFERLVQF 469
EL GGS R + E + L L+ + + L+ YG+ PH G LG +RLV
Sbjct: 203 ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGGIALGLDRLVML 262
Query: 470 ATGVENIRDAIPFPRT 485
TG E+IRD I FP+T
Sbjct: 263 LTGSESIRDVIAFPKT 278
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-08
Identities = 66/270 (24%), Positives = 95/270 (35%), Gaps = 55/270 (20%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL--D 303
VY G FR E + H EF MIE A+AD +DM T L ++ +
Sbjct: 79 VYEIGRNFRNEGIDL-THNPEFTMIEFYEAYADY-NDMMDLTEDLFSGLVKKINGKTKIE 136
Query: 304 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQS 363
+++DF + ++D L DF +L EL K L+K +
Sbjct: 137 YGGKELDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELA----KLLAKLIKEKIEKPR 192
Query: 364 EHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELI 416
+ L ++ F P + D+P EI R + L R I
Sbjct: 193 TLGKLL-DKLFEEFVEPTLIQPTFIIDHPVEISPLAKRHRSNPG-------LTERFELFI 244
Query: 417 GGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDLRHYGS 453
G QRE E + + +DE D ++ YG
Sbjct: 245 CGKEIANAYTELNDPFDQRERFEEQAKQKEAGDDEAMMMDE-----D----FVTALEYGM 295
Query: 454 VPHAGFGLGFERLVQFATGVENIRDAIPFP 483
P G G+G +RLV T +IRD I FP
Sbjct: 296 PPTGGLGIGIDRLVMLLTDSNSIRDVILFP 325
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 7e-08
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
YG+ PH G G +RLV TG E+IRD I FP+T
Sbjct: 522 YGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKT 556
|
Length = 585 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 2e-07
Identities = 68/279 (24%), Positives = 98/279 (35%), Gaps = 77/279 (27%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMAC-----ATAYLQLYSCMQVRY 300
VY G FR E +T RH EF M+E A+AD D M + +V Y
Sbjct: 243 VYEIGRNFRNEGIDT-RHNPEFTMLEFYQAYADYNDMMDLTEELIRHLAQAVLGTTKVTY 301
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD 360
++DF + ++D + DF ++ +A L + + E G
Sbjct: 302 --QG--TEIDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLG-- 355
Query: 361 LQSEHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVPR 411
L E F P ++DYP EI A +++ + P
Sbjct: 356 -------KLINELFEEFVEPKLIQPTFITDYPVEISPLA---KRHRE----------DPG 395
Query: 412 IGE----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYWW 444
+ E IGG QRE +E + +DE D
Sbjct: 396 LTERFELFIGGREIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDE-----D---- 446
Query: 445 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
+L YG P G G+G +RLV T +IRD I FP
Sbjct: 447 FLRALEYGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFP 485
|
Length = 491 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 7e-07
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
YG+ PH G G +RLV G ++IRD I FP+T
Sbjct: 524 YGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKT 558
|
Length = 588 |
| >gnl|CDD|239818 cd04323, AsnRS_cyto_like_N, AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 1e-06
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91
+ V GWV LR+Q + F+ + DG+ +QCV++ L T +S+ + G
Sbjct: 2 VKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKSL-TQESSVEVTGE 58
Query: 92 VVPSQGSKQK---VELKVNKIVLVGK 114
V +KQ EL+V+ + ++G+
Sbjct: 59 VKEDPRAKQAPGGYELQVDYLEIIGE 84
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. AsnRS is immunodominant antigen of the filarial nematode B. malayai and of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 84 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 3e-06
Identities = 65/264 (24%), Positives = 110/264 (41%), Gaps = 40/264 (15%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
+G + +AGWV R + FI++ D S + +Q V DA+ K + +
Sbjct: 14 LGQTVTLAGWVNRRRDLGGLIFIDLRDRSGI--VQVVCDPDADALKLAKG--LRNEDVVQ 69
Query: 88 IQGNVVP-SQGSKQ------KVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTK-AHLRP 139
++G V +G+ ++E+ I L+ KS I +K + E +R K +L
Sbjct: 70 VKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTDAEEEVRLKYRYLDL 129
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
R ++R+ + A F + GF+ I +P++T S EGA + L+PS
Sbjct: 130 RRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGARD-----YLVPSR--- 181
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ K + + S F++ L VSG + Y Y FR E+
Sbjct: 182 -------VHKGEFYALPQSPQLFKQ--LLMVSG---VDRY-------YQIARCFRDEDLR 222
Query: 260 TSRHLAEFWMIEPELAFADLKDDM 283
R EF I+ E++F +D M
Sbjct: 223 ADRQ-PEFTQIDMEMSFMTQEDVM 245
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-05
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 20/130 (15%)
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+R+ + +F E GF + +PI+ P +A P D +P
Sbjct: 1 IRSKIEQKLRRFMAELGFQEVETPIVER---------------EPLLEKAGHEPKDLLP- 44
Query: 210 TKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTS-RHLAEFW 268
+D + +P +L + GP FR E R + EF
Sbjct: 45 VGAEN---EEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFT 101
Query: 269 MIEPELAFAD 278
+E E+ D
Sbjct: 102 QLEGEVFGED 111
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 404 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGF 459
A DM V E+ GGS R R + + L+ + L+ + + L+ G+ PH G
Sbjct: 537 AYDM-VYNGVEIGGGSLRIYRRDVQQKVLEAIGLSPEEAESKFGYLLEALDMGAPPHGGI 595
Query: 460 GLGFERLVQFATGVENIRDAIPFPRT 485
G +RLV G ++IRD I FP+T
Sbjct: 596 AYGLDRLVMLLAGAKSIRDVIAFPKT 621
|
Length = 652 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 15/167 (8%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGAS 85
VG + ++GWV R + FI++ D + +Q V + E ++ +
Sbjct: 14 VGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFV 69
Query: 86 IWIQGNVVP-SQGSKQ------KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTK-AH 136
I + G V +G+ ++E+ +I ++ S + I+ + + E +R K +
Sbjct: 70 IQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDETNASEEIRLKYRY 129
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
L R ++R+ + A F + GF+ I +PI+T S EGA
Sbjct: 130 LDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIETPILTKSTPEGA 176
|
Length = 585 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 5e-05
Identities = 106/500 (21%), Positives = 187/500 (37%), Gaps = 96/500 (19%)
Query: 22 NEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGL 79
N+ L+ + + + VAG + T R +F+ + D + S EG DQ K
Sbjct: 58 NQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARDSLPEGVYNDQFKK-- 115
Query: 80 ITTGASIWIQGNVVPSQGS---KQKVELKVN--KIVLVGKSDPSYPI-------QKKRVS 127
W G+++ ++G+ Q EL ++ ++ L+ K+ P Q+ R
Sbjct: 116 -------WDLGDIIGARGTLFKTQTGELSIHCTELRLLTKALRPLPDKFHGLQDQEVRYR 168
Query: 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQF 187
+ +L A+ + R TF VR+ + A +F GF+ + +P++
Sbjct: 169 QRYLDLIANDKSR-QTF----VVRSKILAAIRQFMVARGFMEVETPMMQ----------- 212
Query: 188 CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNV 246
+IP A+ P T +D +L ++ +L + V
Sbjct: 213 ----VIPGG--ASARPF----ITHHNALDLDM-------YLRIAPELYLKRLVVGGFERV 255
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK 306
+ FR E + RH EF M+E +A+AD D + + + + + +L K
Sbjct: 256 FEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLA----QEVLGTTK 310
Query: 307 -----EDMDF---FNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG 358
DF F + I + E D L DA + L ++ WG
Sbjct: 311 VTYGEHVFDFGKPFEKLTMREAIKKYR--PETDMADLDNFDAAKALAESIG-ITVEKSWG 367
Query: 359 CDLQSEHERYLTE------EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 412
R +TE EA P +++YP E+ R + + + +
Sbjct: 368 LG------RIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPEITDRFEFFIG-- 419
Query: 413 GELIGG-----SQREERLEYLEGRLDELKLNRDSYWWY----LDLRHYGSVPHAGFGLGF 463
G IG + E++ E + +++ D +Y + YG P AG G+G
Sbjct: 420 GREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGI 479
Query: 464 ERLVQFATGVENIRDAIPFP 483
+R++ T IRD I FP
Sbjct: 480 DRMIMLFTNSHTIRDVILFP 499
|
Length = 505 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 75/268 (27%), Positives = 100/268 (37%), Gaps = 50/268 (18%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVR--YILD 303
VY G FR E +T RH EF E A+AD D M + ++ Y +
Sbjct: 300 VYEIGRQFRNEGIST-RHNPEFTTCEFYQAYADYNDMMELTEEMVS-GMVKELTGSYKIK 357
Query: 304 NCKEDMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLIKAKKKFEFLVKWGCDLQ 362
++DF + +I + DF L +A LI A +KF+ C
Sbjct: 358 YHGIEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDV----KCPPP 413
Query: 363 SEHERYLTE--EAFG--GC--PVIVSDYPKEIK--AFYMRQNDD----------GRTVA- 403
R L E E F P V D+P E+ A R GR +A
Sbjct: 414 QTTGRLLNELFEEFLEETLVQPTFVLDHPVEMSPLAKPHRSKPGLTERFELFINGRELAN 473
Query: 404 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNR--DSYWWYLD------LRHYGSVP 455
A L + QRE R E +++K + D LD L YG P
Sbjct: 474 AFSELTDPV------DQRE-RFE------EQVKQHNAGDDEAMALDEDFCTALE-YGLPP 519
Query: 456 HAGFGLGFERLVQFATGVENIRDAIPFP 483
G+GLG +RLV T +IRD I FP
Sbjct: 520 TGGWGLGIDRLVMLLTDSASIRDVIAFP 547
|
Length = 553 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 3e-04
Identities = 45/170 (26%), Positives = 78/170 (45%), Gaps = 23/170 (13%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R + FI++ D + +Q V DAE ++ +S + + I
Sbjct: 16 VGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQ 71
Query: 88 IQGNVVP-SQGSKQK------VELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAH--- 136
+ G V +G+ +E+ +++ ++ KS +PI + E LR K +
Sbjct: 72 VTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEEDVSEELRLK-YRYL 130
Query: 137 -LR-PR-TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
LR P ++R+ + A F +NGF+ I +PI+T S EGA
Sbjct: 131 DLRRPEMQKNL----KLRSKVTSAIRNFLDDNGFLEIETPILTKSTPEGA 176
|
Length = 588 |
| >gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 9e-04
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 15/102 (14%)
Query: 32 IVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTSDAEG-----YDQVKSGLITTGAS 85
+++ V T RAQ + + F+ + +Q V+ + AEG S ++ +
Sbjct: 2 VLIRARVHTSRAQGAKLAFLVLRQQG--YTIQGVLAASAEGVSKQMVKWAGS--LSKESI 57
Query: 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQ 122
+ ++G V + ++Q VEL + KI +V ++ P Q
Sbjct: 58 VDVEGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQ 99
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Length = 102 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 63/271 (23%), Positives = 113/271 (41%), Gaps = 49/271 (18%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R +TF++V D + + + + E + + +
Sbjct: 71 VGSRVTLCGWVDLHRDMGGLTFLDVRDHTGIVQVVTLPDEFPEAHRTANR--LRNEYVVA 128
Query: 88 IQGNVVPSQGSKQ--------KVELKVNKI-VL--VGKSDPSYPI----QKKRVSREFLR 132
++G V S+ + VE+ + +L V KS P + + ++K +E +R
Sbjct: 129 VEG-TVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLP-FLVTTADEQKDSIKEEVR 186
Query: 133 TK-AHLRPRTNTFGAVARVRNALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVT 190
+ L R A R+R+ + ++ ++ +GF+ I +PI++ S EGA +
Sbjct: 187 LRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDY---- 242
Query: 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFG 250
L+PS + A+P+ S F++ L VSG + Y Y
Sbjct: 243 -LVPSRVQPGT--FYALPQ--------SPQLFKQ--MLMVSG---FDRY-------YQIA 279
Query: 251 PTFRAENSNTSRHLAEFWMIEPELAFADLKD 281
FR E+ R EF ++ ELAF L+D
Sbjct: 280 RCFRDEDLRADRQ-PEFTQLDMELAFTPLED 309
|
Length = 652 |
| >gnl|CDD|239814 cd04319, PhAsnRS_like_N, PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Score = 36.3 bits (84), Expect = 0.004
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 8/108 (7%)
Query: 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQ 89
+ +AGWV R FI + D + + +Q V + D E Y + K + +S+ ++
Sbjct: 2 VTLAGWVYRKREVGKKAFIVLRDSTGI--VQAVFSKDLNEEAYREAKK--VGIESSVIVE 57
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHL 137
G V + E+ K+ ++ + +PI + S EFL HL
Sbjct: 58 GAVKADPRAPGGAEVHGEKLEIIQNVEF-FPITED-ASDEFLLDVRHL 103
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Length = 103 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 491 | |||
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 100.0 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 100.0 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.85 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.81 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.79 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.78 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.71 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.7 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.68 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 99.68 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 99.66 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 99.65 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.65 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 99.63 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.63 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 99.59 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.55 | |
| cd00645 | 309 | AsnA Asparagine synthetase (aspartate-ammonia liga | 99.5 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 99.49 | |
| PRK05425 | 327 | asparagine synthetase AsnA; Provisional | 99.49 | |
| PTZ00213 | 348 | asparagine synthetase A; Provisional | 99.47 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.43 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 99.43 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 99.35 | |
| TIGR00669 | 330 | asnA aspartate--ammonia ligase, AsnA-type. The fac | 99.33 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 99.31 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 99.29 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.93 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.9 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 98.78 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.68 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 98.68 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.6 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.37 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 98.36 | |
| KOG2783 | 436 | consensus Phenylalanyl-tRNA synthetase [Translatio | 98.33 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 98.25 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 98.14 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 98.05 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.03 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 97.96 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 97.94 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.86 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.77 | |
| COG2502 | 330 | AsnA Asparagine synthetase A [Amino acid transport | 97.76 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.7 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.67 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.67 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.65 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.63 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.59 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 97.59 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.59 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.58 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.57 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.56 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.54 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 97.53 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.53 | |
| PLN02530 | 487 | histidine-tRNA ligase | 97.51 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.49 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.46 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 97.46 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.44 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.44 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.37 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 97.31 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.24 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.23 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 97.05 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.85 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 96.73 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 96.65 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 96.55 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 96.52 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 96.48 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.23 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 96.07 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 95.94 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 95.7 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 95.64 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 95.64 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 95.43 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 95.33 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 95.09 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 94.85 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 94.52 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 94.33 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 94.25 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 94.17 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 94.16 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 94.15 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 93.95 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 93.78 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 93.73 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 93.73 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 93.48 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 93.12 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 92.47 | |
| cd04479 | 101 | RPA3 RPA3: A subfamily of OB folds similar to huma | 92.39 | |
| PRK15491 | 374 | replication factor A; Provisional | 92.29 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 91.92 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 91.87 | |
| PF08661 | 109 | Rep_fac-A_3: Replication factor A protein 3; Inter | 91.75 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 91.57 | |
| PRK14699 | 484 | replication factor A; Provisional | 91.55 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 90.83 | |
| PRK13902 | 900 | alaS alanyl-tRNA synthetase; Provisional | 90.71 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 90.31 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 89.7 | |
| TIGR03683 | 902 | A-tRNA_syn_arch alanyl-tRNA synthetase. This famil | 89.58 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 89.57 | |
| PRK06461 | 129 | single-stranded DNA-binding protein; Reviewed | 89.42 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 89.27 | |
| PF03100 | 131 | CcmE: CcmE; InterPro: IPR004329 CcmE is the produc | 89.22 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 89.09 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 88.41 | |
| PRK07217 | 311 | replication factor A; Reviewed | 88.26 | |
| COG2024 | 536 | Phenylalanyl-tRNA synthetase alpha subunit (archae | 86.62 | |
| PRK07279 | 1034 | dnaE DNA polymerase III DnaE; Reviewed | 85.47 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 84.77 | |
| PLN02900 | 936 | alanyl-tRNA synthetase | 84.49 | |
| cd04491 | 82 | SoSSB_OBF SoSSB_OBF: A subfamily of OB folds simil | 84.14 | |
| PRK01584 | 594 | alanyl-tRNA synthetase; Provisional | 84.13 | |
| PRK00252 | 865 | alaS alanyl-tRNA synthetase; Reviewed | 83.82 | |
| cd04484 | 82 | polC_OBF polC_OBF: A subfamily of OB folds corresp | 83.43 | |
| COG0013 | 879 | AlaS Alanyl-tRNA synthetase [Translation, ribosoma | 83.37 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 83.0 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 82.99 | |
| KOG3108 | 265 | consensus Single-stranded DNA-binding replication | 82.96 | |
| TIGR00344 | 851 | alaS alanine--tRNA ligase. The model describes ala | 82.55 | |
| PRK12366 | 637 | replication factor A; Reviewed | 82.34 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 81.37 | |
| PRK07211 | 485 | replication factor A; Reviewed | 80.94 | |
| PRK14699 | 484 | replication factor A; Provisional | 80.79 | |
| PRK07218 | 423 | replication factor A; Provisional | 80.74 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 80.58 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 80.57 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 80.48 |
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-113 Score=912.89 Aligned_cols=484 Identities=87% Similarity=1.369 Sum_probs=439.9
Q ss_pred CCCCcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCC
Q 011197 4 KVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (491)
Q Consensus 4 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~g 83 (491)
+.+++..++.|+++...-..+....|++|+|+|||+++|.+|+++|++|+|+++..+||||++++...++.+..+.|+.|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~iR~~g~~~Fi~l~Dgs~~~~lQ~v~~~~~~~~~~l~~~~l~~g 161 (565)
T PLN02603 82 AVGEFRKKLRIADVKGGEDEGLARVGKTLNVMGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTPDAEGYDQVESGLITTG 161 (565)
T ss_pred cccccCCceEhhhcccccccccccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCCEeEEEEEECcHHHHHHHhhcCCCCC
Confidence 35677788999999843222345789999999999999999999999999999866899999877655666543349999
Q ss_pred cEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHh
Q 011197 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163 (491)
Q Consensus 84 d~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~ 163 (491)
|+|.|+|+|++++++++.+||++++++||++|++++|++++.++.+++|.++|||+|++.+++++|+||++++++|+||.
T Consensus 162 s~V~V~G~v~~~~~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~~air~ff~ 241 (565)
T PLN02603 162 ASVLVQGTVVSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 241 (565)
T ss_pred CEEEEEEEEEecCCCCccEEEEEeEEEEEECCCCCCCCcccccchhhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988878899999999999999888999988899999999999999999999999999999999999999
Q ss_pred hCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccC
Q 011197 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATAL 243 (491)
Q Consensus 164 ~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~ 243 (491)
++||+||+||+|++++|||+++.|.||+..+..+|++.+....++++.++..+.+.+||++++||++|||||+|++++|+
T Consensus 242 ~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~~E~~~~~l 321 (565)
T PLN02603 242 ENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGETYATAL 321 (565)
T ss_pred HCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHHHHHHHhcc
Confidence 99999999999999999999999999887655444433333446666666666778999999999999999999999999
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhh
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDR 323 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 323 (491)
+|||+||||||||+++|+|||+||||||+|++|+|++|+|+++|++|++ +++.+++++.+++++.+++.+.++.+.
T Consensus 322 ~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~dl~d~m~~~E~~l~~----~~~~v~~~~~~el~~~~~~~~~~~~~~ 397 (565)
T PLN02603 322 SDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQY----VVKYILENCKEDMEFFNTWIEKGIIDR 397 (565)
T ss_pred cceEEEecceeCCCCCCccccccceeeeeeeecCCHHHHHHHHHHHHHH----HHHHHHcccHhHHHhcCCcccccHHHH
Confidence 9999999999999999999999999999999999999999999999999 999999999999999888877788888
Q ss_pred hhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceE
Q 011197 324 LSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVA 403 (491)
Q Consensus 324 l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~ 403 (491)
+++.++.||++|||+||+++|++.+.+++.+++||.+|+.++|++|.+.+++++||||+|||..++||||+.++|+.+++
T Consensus 398 l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~~~~~PvfVtdyP~~ikpFYm~~~~d~~~v~ 477 (565)
T PLN02603 398 LSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEAFGGRPVIIRDYPKEIKAFYMRENDDGKTVA 477 (565)
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHhccCCCEEEECCccccCccccccCCCCCeeE
Confidence 88888889999999999999998877666668899999999999999877655799999999999999998888888999
Q ss_pred EEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccC
Q 011197 404 AMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483 (491)
Q Consensus 404 ~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FP 483 (491)
+|||++||+|||+||+||+|+++++.++++++|+++++|+|||++++||+|||||||||||||+|++||.+|||||++||
T Consensus 478 ~fDLl~p~~gEl~gGsqRe~r~e~L~~~~~e~g~~~e~y~wYLdl~r~G~pPhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 478 AMDMLVPRVGELIGGSQREERLEYLEARLDELKLNKESYWWYLDLRRYGSVPHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred EEEEEecCceEecCHHHHHhhHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCC
Q 011197 484 RTPGSVEF 491 (491)
Q Consensus 484 r~~~~~~~ 491 (491)
|++|+|.+
T Consensus 558 R~~g~~~~ 565 (565)
T PLN02603 558 RVPGSAEF 565 (565)
T ss_pred CCCCCCCC
Confidence 99999975
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-110 Score=850.80 Aligned_cols=428 Identities=46% Similarity=0.777 Sum_probs=393.3
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V 86 (491)
.+++++|+... ..+++|+|+|||+++|.+|+++||.|||++|+ ||||++++. ..++ ++. |+.||+|
T Consensus 3 ~~~~i~di~~~------~~~~~V~v~GWV~~~R~~g~i~Fi~lrDgsg~--iQ~v~~~~~~~~~~~~-~~~--L~~es~v 71 (435)
T COG0017 3 KRTYIKDIKPH------VGGQEVTVRGWVHNKRDLGKIIFLVLRDGSGF--IQAVVPKNKVYEELFK-AKK--LTLESSV 71 (435)
T ss_pred ceeeHHhhhcc------CCCcEEEEEEEeeeecccCCeEEEEEEcCCcE--EEEEEECCCCcHHHhh-hhc--CCCccEE
Confidence 46788898864 34499999999999999999999999999986 999998642 2344 667 9999999
Q ss_pred EEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC-hhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhC
Q 011197 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS-REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (491)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~-~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (491)
.|+|+|++++.+.|++||++++++|++.+.+++|++++.++ .++++++|||++|++..+++|++||.+++++|+||.++
T Consensus 72 ~V~G~v~~~~~a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~~~~e~lld~rhL~lR~~~~~Av~kirs~i~~a~~eff~~~ 151 (435)
T COG0017 72 VVTGIVKASPKAPQGFELQVEKIEVLGEADPPYPIDKKEHSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYEN 151 (435)
T ss_pred EEEEEEEcCCCCCCCEEEEEEEEEEeeccCCCCCcCcccccCHHHHHhchheeccccchHHHHhHHHHHHHHHHHHHHhC
Confidence 99999999999889999999999999999667999999886 99999999999999999999999999999999999999
Q ss_pred CcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCc
Q 011197 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (491)
Q Consensus 166 ~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~r 245 (491)
||+||+||+|+++++||++++|.+ +||+.++||+||||||+|+++++++|
T Consensus 152 gF~eV~tP~i~~~~~EGg~elF~v------------------------------~yf~~~a~LtqS~QLyke~~~~al~r 201 (435)
T COG0017 152 GFTEVHTPIITASATEGGGELFKV------------------------------DYFDKEAYLTQSPQLYKEALAAALER 201 (435)
T ss_pred CcEEecCceEeccCCCCCceeEEE------------------------------eecCcceEEecCHHHHHHHHHHHhCc
Confidence 999999999999999999999987 78999999999999999988888999
Q ss_pred eEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhh
Q 011197 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLS 325 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 325 (491)
||+|||+||+|+++|+|||+||||+|.||+|++++|+|+++|+||++ +++.+++.|+.+|++++.. . ..+.
T Consensus 202 Vf~igP~FRAE~s~T~RHL~EF~~ld~Emaf~~~~d~m~l~E~~i~~----i~~~v~e~~~~el~~l~~~--~---~~l~ 272 (435)
T COG0017 202 VFTIGPTFRAEKSNTRRHLSEFWMLDPEMAFADLNDVMDLAEELIKY----LFKKVLEECADELEFLGRD--N---SELK 272 (435)
T ss_pred eEEecCceecCCCCCcchhhhHheecceeccCcHHHHHHHHHHHHHH----HHHHHHHHhHHHHHHhhcc--c---hhhc
Confidence 99999999999999999999999999999999999999999999999 9999999999888877531 0 1122
Q ss_pred hhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCC-CceEE
Q 011197 326 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAA 404 (491)
Q Consensus 326 ~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~-~~~~~ 404 (491)
.....||+||||+||+++|++.+.+. +.||+|+.+++|++|.+.+++ .|+||+|||.+++||||+.++|+ +++.+
T Consensus 273 ~~~~~pf~ritY~eAieiL~~~~~e~---~~~GdDl~~e~Er~l~e~~~~-~~vfv~~yP~~~kpFYm~~~~d~p~~~~~ 348 (435)
T COG0017 273 RPESAPFPRITYKEAIEILEEKGFEK---VEWGDDLGTEHERYLGEEYFK-PPVFVTNYPKEIKPFYMRPDPDNPGTVAS 348 (435)
T ss_pred ccccCCccEEEHHHHHHHHHhcCCcc---cCCCCccCCHHHHHHHHHhCC-CcEEEEeCcccccccccccCCCCCCeEEE
Confidence 11146899999999999999877643 789999999999999988775 57999999999999999988766 79999
Q ss_pred EEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCC
Q 011197 405 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484 (491)
Q Consensus 405 fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr 484 (491)
|||++||+|||+|||||+|+++.+.+++++.|++++.|+|||++++||+|||||||||+|||+|++||..||||++||||
T Consensus 349 ~Dll~p~~gEIigGsqRe~~~d~L~~ri~~~gl~~e~~~wYld~~kyG~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR 428 (435)
T COG0017 349 FDLLAPGGGEIIGGSQREHDYDLLVERIKEKGLDPESYEWYLDLRKYGMPPHAGFGLGLERLVMYILGLDNIREAIPFPR 428 (435)
T ss_pred EeeecCCceeeecceeccccHHHHHHHHHHcCCChHHhHHHHHHHHcCCCCCcccccCHHHHHHHHhCCCcceeccccCC
Confidence 99999998999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC
Q 011197 485 TPGSVEF 491 (491)
Q Consensus 485 ~~~~~~~ 491 (491)
+++++.+
T Consensus 429 ~~~r~~p 435 (435)
T COG0017 429 DPGRLYP 435 (435)
T ss_pred CCCCCCC
Confidence 9999864
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-107 Score=860.81 Aligned_cols=474 Identities=50% Similarity=0.896 Sum_probs=407.4
Q ss_pred ceeeccccCCcc------c---CCCCCCcEEEEEEEEeeeecCC--CeEEEEEEcCCCccceEEEEeCCccchhhhhhcC
Q 011197 11 KLKIVDVKGGPN------E---GLDRVGLMIVVAGWVRTLRAQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (491)
Q Consensus 11 ~~~i~~l~~~~~------~---~~~~~~~~V~v~G~V~~~R~~g--kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~ 79 (491)
|+.|..++.... + ..++.|++|+|+|||+++|.+| +++|++|||++|...+|||++++...++.+++
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~~~~~~~l~~-- 131 (586)
T PTZ00425 54 RIRICNVLNVPKSEKEFNDNSRKNKYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQSIENYEKLLK-- 131 (586)
T ss_pred ceeeehhccCccccccccccccccccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCchHHHHHHhc--
Confidence 566777765321 0 2356799999999999999987 49999999999866899999866445666777
Q ss_pred CCCCcEEEEEEEEEecCCC--------ceeEEEEE-----eeEEEEccCC-C-CCCCCccccChhhhccCccccCCChHH
Q 011197 80 ITTGASIWIQGNVVPSQGS--------KQKVELKV-----NKIVLVGKSD-P-SYPIQKKRVSREFLRTKAHLRPRTNTF 144 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~~--------~~~~el~~-----~~i~ils~~~-~-~~P~~~~~~~~~~~r~~~~l~~R~~~~ 144 (491)
|+.|++|.|+|+|+.++.+ .+++||.+ .+++||+++. + .||++++.++.+++|++||||+|++.+
T Consensus 132 l~~gs~v~v~G~v~~~~~~~~n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~~~~e~lr~~rhL~lR~~~~ 211 (586)
T PTZ00425 132 CGVGCCFRFTGKLIISPVQNENKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKNHGKEFLREVAHLRPRSYFI 211 (586)
T ss_pred CCCccEEEEEEEEEcCCccccCcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCccCChhhhhhccceeccCHHH
Confidence 9999999999999986533 35699998 6999999983 3 499998889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcc----cc------------------cC-
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR----EA------------------AE- 201 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~----~~------------------~~- 201 (491)
+++||+||.+..++|+||.++||+||+||+|++++|||+++.|.|++...+.. .+ +.
T Consensus 212 ~avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 291 (586)
T PTZ00425 212 SSVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNA 291 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeeccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999876421100 00 00
Q ss_pred ---------CCCCCCCCCC-CCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCCCccccccccee
Q 011197 202 ---------SPVDAIPKTK-DGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE 271 (491)
Q Consensus 202 ---------~~~~~~~~~~-~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE 271 (491)
+.....++.. ....+.+.+||++++||++|||||+|++++|++|||+||||||||+++|+||+|||||||
T Consensus 292 ~~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE 371 (586)
T PTZ00425 292 NNNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENLCSSMGDVYTFGPTFRAENSHTSRHLAEFWMIE 371 (586)
T ss_pred cccccccccccccccccccccccccccccccCcceEEEcCchHHHHHHHhccCCEEEEeceEeCCCCCCCCCCcccceEE
Confidence 0000111111 112233568999999999999999998899999999999999999999999999999999
Q ss_pred eEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhcccc
Q 011197 272 PELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKF 351 (491)
Q Consensus 272 ~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~ 351 (491)
+||+|+|++++|+++|++|++ +++.+++.+..++.+.+.....++.+.++..++.||++|||+||+++|++.+.++
T Consensus 372 ~E~af~d~~d~m~~~E~li~~----v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~ 447 (586)
T PTZ00425 372 PEIAFADLYDNMELAESYIKY----CIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSF 447 (586)
T ss_pred EEEecCCHHHHHHHHHHHHHH----HHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhc
Confidence 999999999999999999999 9999988888888876543344566777777788999999999999999876544
Q ss_pred ccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHH
Q 011197 352 EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 431 (491)
Q Consensus 352 ~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~ 431 (491)
...+.||.++..++|++|.+.++. +|+||+|||.+++||||+.++|+..+++|||++||+|||+||++|+++++.+.++
T Consensus 448 ~~~~~~G~dL~~e~Er~L~~~~~~-~PvFItdyP~~~kPFY~~~~~d~~~v~~fDLlvpgiGEI~gGsqRe~~~e~L~~~ 526 (586)
T PTZ00425 448 EVPVKWGMDLQSEHERFVAEQIFK-KPVIVYNYPKDLKAFYMKLNEDQKTVAAMDVLVPKIGEVIGGSQREDNLERLDKM 526 (586)
T ss_pred CCCCCcccccchHHHHHHHHHhcC-CcEEEECCccccCccccCcCCCCCeEEEEeEEccCceEEccCCCccccHHHHHHH
Confidence 445789999999999999986555 7999999999999999988877788999999999999999999999999999999
Q ss_pred HHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011197 432 LDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491 (491)
Q Consensus 432 ~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~~ 491 (491)
+++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.|
T Consensus 527 ike~gl~~e~~~wYLd~rryG~pPhgGfGLGiERLvm~ltGl~nIRDvi~FPR~~g~~~~ 586 (586)
T PTZ00425 527 IKEKKLNMESYWWYRQLRKFGSHPHAGFGLGFERLIMLVTGVDNIKDTIPFPRYPGHAEF 586 (586)
T ss_pred HHHcCCChhHHHHHHHHhhCCCCCCceEEEcHHHHHHHHcCCCchheEEECcCCCCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999976
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-106 Score=860.86 Aligned_cols=475 Identities=56% Similarity=0.954 Sum_probs=409.4
Q ss_pred CcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCC--eEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCc
Q 011197 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS--VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gk--l~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd 84 (491)
.|..+++|++++....++..+.|++|+|+|||+++|.+|| ++||+|||+++.+.||||++++.. ...+. |+.|+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~--~~~~~--L~~ES 103 (572)
T PLN02221 28 QFSDRVLIRSILDRPDGGAGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY--DLSTL--VATGT 103 (572)
T ss_pred cccCceEHHHHhccccCChhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh--hHHhc--CCCce
Confidence 4667889999985544456789999999999999999985 899999999954469999986532 22235 99999
Q ss_pred EEEEEEEEEecCC---CceeEEEEEeeEEEEccCCC-CCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHH
Q 011197 85 SIWIQGNVVPSQG---SKQKVELKVNKIVLVGKSDP-SYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (491)
Q Consensus 85 ~V~V~G~v~~~~~---~~~~~el~~~~i~ils~~~~-~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (491)
+|.|+|+|+.++. ..+++||++++++|||+|.. ++|++.+.++.+++|+++|||+|++.++++||+||.+.+++|+
T Consensus 104 ~V~V~G~V~~~~~~~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i~~aiR~ 183 (572)
T PLN02221 104 CVTVDGVLKVPPEGKGTKQKIELSVEKVIDVGTVDPTKYPLPKTKLTLEFLRDVLHLRSRTNSISAVARIRNALAFATHS 183 (572)
T ss_pred EEEEEEEEEeCCccCCCCccEEEEEeEEEEEecCCCCCCCCCCCcCChHHHhhcchhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999998764 34689999999999999974 5999988889999999999999999999999999999999999
Q ss_pred HHhhCCcEEeecceeeccCCCCCCCceeeeecCCCc----------------------------------ccccCC----
Q 011197 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS----------------------------------REAAES---- 202 (491)
Q Consensus 161 ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~----------------------------------~~~~~~---- 202 (491)
||.++||+||+||+|++++|||+++.|.|++..... -|.+.+
T Consensus 184 ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (572)
T PLN02221 184 FFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAAKASKEE 263 (572)
T ss_pred HHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhccccchhh
Confidence 999999999999999999999999999997643100 000000
Q ss_pred ----------------------CC-CCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCC
Q 011197 203 ----------------------PV-DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259 (491)
Q Consensus 203 ----------------------~~-~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~ 259 (491)
.. ...+ ++.+..+.+.+||++++||+||||||||++++|++|||+||||||||+++
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~~~l~rVfeIgP~FRAE~s~ 342 (572)
T PLN02221 264 ITAAVAELKIAKESLAHIEERSKLKPGLP-KKDGKIDYSKDFFGRQAFLTVSGQLQVETYACALSSVYTFGPTFRAENSH 342 (572)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccCCc-ccccccccccccCCCCeeeccCHHHHHHHHHHhcCCeEEEccceecCCCC
Confidence 00 0011 33445556779999999999999999999889999999999999999999
Q ss_pred CCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHH
Q 011197 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 339 (491)
Q Consensus 260 t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~e 339 (491)
|+||||||||||+||+|.|++|+|+++|+||++ +++.+.+.+.+++.++........++.++...+.||+||||.|
T Consensus 343 T~RHL~EFtmlE~Emaf~d~~dvm~l~E~lv~~----i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIty~E 418 (572)
T PLN02221 343 TSRHLAEFWMVEPEIAFADLEDDMNCAEAYVKY----MCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTE 418 (572)
T ss_pred CCcccccccceeeeeecCCHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEEHHH
Confidence 999999999999999999999999999999999 9999988888777665433333344556655678999999999
Q ss_pred HHHHHHHh---ccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEee
Q 011197 340 AIELLIKA---KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELI 416 (491)
Q Consensus 340 a~~~l~~~---~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~ 416 (491)
|+++|++. |.+++..+.||.++..++|++|.+.++. +|+||+|||..++||||+.++++..++|||||++|+|||+
T Consensus 419 Ai~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~~~-~pvfv~dyP~~~~pfy~~~~~d~~~~~~fDLl~~g~~El~ 497 (572)
T PLN02221 419 AIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQ-KPLIVYNYPKGIKAFYMRLNDDEKTVAAMDVLVPKVGELI 497 (572)
T ss_pred HHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHhcC-CcEEEEcCChhhCcccccCCCCCceEEEEEEecCCceEEC
Confidence 99999874 4444445679999999999999886554 8999999999999999877777778899999999999999
Q ss_pred chhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011197 417 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491 (491)
Q Consensus 417 ~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~~ 491 (491)
+|++|+++++.+++++++.|++++.|+|||+|++||+|||||||||||||+||+||.+|||||++|||++++|.+
T Consensus 498 ~g~~R~~r~e~l~~~~~~~g~~~~~~~~yLda~~~G~pPh~G~GlGiERLvm~l~g~~nIRdvi~FPR~~~~~~~ 572 (572)
T PLN02221 498 GGSQREERYDVIKQRIEEMGLPIEPYEWYLDLRRYGTVKHCGFGLGFERMILFATGIDNIRDVIPFPRYPGKADL 572 (572)
T ss_pred CHHHHHHHHHHHHHHHHHcCCChhhhHHHHHHhhCCCCCCceEEEeHHHHHHHHcCCCchheEeecCCCcCcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999964
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-106 Score=860.27 Aligned_cols=477 Identities=45% Similarity=0.826 Sum_probs=417.7
Q ss_pred CCCcccceeeccccCCcccCCCCCCcEEEEEEEEeeee------------------------------------------
Q 011197 5 VGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR------------------------------------------ 42 (491)
Q Consensus 5 ~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R------------------------------------------ 42 (491)
.++|+.|+.++.|+...++|...+|+.|.|.|||++.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (633)
T PLN02532 23 PSKYSNRVVLKTILGRSDGGAGLVGKRVVVGGWVKSAKEVKKEPAPPPPPQSPSSAGDQSPGHKDVRCTEILQSRVPIFR 102 (633)
T ss_pred chhccceeeeeeecccCCCccccccceEEecceehhhHHhhcCCCCCCCCCCCCCCCCCCCCcCCcchhHHHhhhcHHHH
Confidence 46899999999999987788889999999999998743
Q ss_pred ----------------------------cCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEe
Q 011197 43 ----------------------------AQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVP 94 (491)
Q Consensus 43 ----------------------------~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~ 94 (491)
.+|+++||+|||++|..+||||+++....+. .. |+.|++|.|+|+|+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~g~i~FI~LrDGSg~~~lQvVv~~~~~~~~--~~--L~~Es~V~V~G~V~~ 178 (633)
T PLN02532 103 SIAKVLSGGGSTYPVREKTEIAIQKSAPPPPSVAYLLISDGSCVASLQVVVDSALAPLT--QL--MATGTCILAEGVLKL 178 (633)
T ss_pred HHHHHHcCCCCCCCcccccccccccccccCCCcEEEEEECCCCccceEEEEeCCcccHh--hc--CCCceEEEEEEEEEe
Confidence 3348899999999997789999987643332 45 999999999999998
Q ss_pred cCC--CceeEEEEEeeEEEEccCC-CCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEee
Q 011197 95 SQG--SKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWIS 171 (491)
Q Consensus 95 ~~~--~~~~~el~~~~i~ils~~~-~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~ 171 (491)
++. ..+++||.|++++||+++. .+||++++.++.|++|++||||+|++.++++||+||++++++|+||.++||+||+
T Consensus 179 ~~~~~~~g~iEl~v~~i~VLg~a~~~p~Pi~~k~~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~ 258 (633)
T PLN02532 179 PLPAQGKHVIELEVEKILHIGTVDPEKYPLSKKRLPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQ 258 (633)
T ss_pred cCCCCCCCcEEEEeeEEEEEecCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEee
Confidence 843 3678999999999999986 3599998888999999999999999999999999999999999999999999999
Q ss_pred cceeeccCCCCCCCceeeeecCCCcccc---------cCC--------------CC------------------------
Q 011197 172 SPIITASDCEGAGEQFCVTTLIPSSREA---------AES--------------PV------------------------ 204 (491)
Q Consensus 172 TPiL~~~~~eg~~~~F~vt~~~~~~~~~---------~~~--------------~~------------------------ 204 (491)
||+|++++|||+++.|.|++.....+++ +.. .+
T Consensus 259 TPiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (633)
T PLN02532 259 VPIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTN 338 (633)
T ss_pred CCeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhcccccccccccccccccccccccccccccc
Confidence 9999999999999999998754211110 000 00
Q ss_pred ------------CCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCCCcccccccceee
Q 011197 205 ------------DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEP 272 (491)
Q Consensus 205 ------------~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~ 272 (491)
...+.++.++.+++.+||++++||+||||||+|++++|++|||+||||||||+++|+||||||||||+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 339 QLASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred cccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHHHhcCceEEEccceecCCCCCCcccccccceee
Confidence 00112234455678899999999999999999988899999999999999999999999999999999
Q ss_pred EeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhc-ccc
Q 011197 273 ELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKF 351 (491)
Q Consensus 273 e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~-~~~ 351 (491)
|++|.||+|+|+++|+||++ +++.+++++..++++++........+.++..+..||+||||.||+++|++.+ .++
T Consensus 419 Emaf~d~~dvM~l~E~lI~~----v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~ 494 (633)
T PLN02532 419 EMAFSELEDAMNCAEDYFKF----LCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKF 494 (633)
T ss_pred eehhcCHHHHHHHHHHHHHH----HHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCc
Confidence 99999999999999999999 9999999888888877644443445556656778999999999999998763 445
Q ss_pred ccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHH
Q 011197 352 EFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 431 (491)
Q Consensus 352 ~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~ 431 (491)
+...+||.||..++|++|++.+++ .|+||+|||.+++||||+.++|+.++++|||+++|+|||+||++|+|+++.+.++
T Consensus 495 e~~~~~g~dL~~e~Er~L~~~~~~-~PvFVtdyP~~ikPFY~~~~~d~~~v~~FDLlvp~~GEIigGsqRE~r~e~L~~~ 573 (633)
T PLN02532 495 ETKPEWGIALTTEHLSYLADEIYK-KPVIIYNYPKELKPFYVRLNDDGKTVAAFDLVVPKVGTVITGSQNEERMDILNAR 573 (633)
T ss_pred ccccccCCccChHHHHHHHHHHcC-CCEEEECCChhhchhhCCcCCCCCceEEEEEecCCCeEEeeCcEeHHHHHHHHHH
Confidence 556789999999999999987665 8999999999999999988888889999999999989999999999999999999
Q ss_pred HHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 432 LDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 432 ~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
+++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|.
T Consensus 574 ~ke~Gld~e~~ewYLdlrryG~pPHgGfGLG~ERLvm~ltGl~nIRDvi~FPR~~g~~~ 632 (633)
T PLN02532 574 IEELGLPREQYEWYLDLRRHGTVKHSGFSLGFELMVLFATGLPDVRDAIPFPRSWGKAN 632 (633)
T ss_pred HHHcCCChhhHHHHHHHHHcCCCCCeEEEEhHHHHHHHHhCCCchheEeecCCCcCcCC
Confidence 99999999999999999999999999999999999999999999999999999999985
|
|
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-105 Score=842.87 Aligned_cols=447 Identities=57% Similarity=0.956 Sum_probs=398.7
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc--cchhhhhhcCCCCCcEEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~--~~~~~~~~~~L~~gd~V~V~G 90 (491)
+|+++... ..++.|++|+|+|||+++|.+||++|++|||+++.+.||||++++. ..++.++. |+.||+|.|+|
T Consensus 3 ~~~~~~~~---~~~~~g~~v~v~Gwv~~~R~~~~~~F~~lrD~~~~g~iQ~v~~~~~~~~~~~~~~~--l~~gs~V~v~G 77 (453)
T TIGR00457 3 AIKDLLQQ---VYKFVGDEVTVSGWVRTKRSSKKIIFLELNDGSSLGPIQAVINGEDNPYLFQLLKS--LTTGSSVSVTG 77 (453)
T ss_pred cHHHHHhc---chhcCCCEEEEEEEeEEEEcCCCeEEEEEECCCCCccEEEEEeCCcChHHHHHHHc--CCCCcEEEEEE
Confidence 45566542 1246799999999999999999999999999993335999998763 22445666 99999999999
Q ss_pred EEEecCCCceeEEEEEeeEEEEccCC-CCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEE
Q 011197 91 NVVPSQGSKQKVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169 (491)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~ils~~~-~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~E 169 (491)
++++++...+++||.+++++||++|. ..+|++.+.++.++++++||||+|++.++++|++||.|++++|+||.++||+|
T Consensus 78 ~v~~~~~~~~~~El~~~~i~vl~~~~~~~~P~~~~~~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~~~r~~~~~~gf~e 157 (453)
T TIGR00457 78 KVVESPGKGQPVELQVKKIEVVGEAEPDDYPLQKKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTW 157 (453)
T ss_pred EEEcCCCCCCCEEEEEeEEEEEecCCccCCCCCccccChhhHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence 99998766678999999999999997 35999988888999999999999999999999999999999999999999999
Q ss_pred eecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEE
Q 011197 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTF 249 (491)
Q Consensus 170 V~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI 249 (491)
|+||+|++++|||++++|.+.+.+. +.+.+||++++||++|||||||++++|++|||||
T Consensus 158 V~TP~l~~~~~eg~~~~F~v~~~~~---------------------~~~~~~~~~~~yL~~Spql~lq~l~~g~~rVf~i 216 (453)
T TIGR00457 158 VSPPILTSNDCEGAGELFRVSTDGI---------------------DFSQDFFGKEAYLTVSGQLYLETYALALSKVYTF 216 (453)
T ss_pred ecCCeEeecCCCCCCCceEeccccc---------------------ccchhccCCccccccCHHHHHHHHhhcccCceEe
Confidence 9999999999999999998743221 0124699999999999999999888999999999
Q ss_pred ccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhc
Q 011197 250 GPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAE 329 (491)
Q Consensus 250 ~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~ 329 (491)
|||||||+++++||||||||||||++|+|++|+|+++|+++++ +++.+.+.+..+++........++...++++++
T Consensus 217 ~~~FR~E~~~t~rHl~EFt~le~e~~~~~~~dvm~~~E~lv~~----i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 292 (453)
T TIGR00457 217 GPTFRAEKSNTSRHLSEFWMIEPEMAFANLNDLLQLAETLIKY----IIKAVLENCSQELKFLEKNFDKDLIKRLENIIN 292 (453)
T ss_pred eeccccCCCCCCcCcchhccceeeeecCCHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhhccCCchHHHHHHHhcC
Confidence 9999999998899999999999999999999999999999999 999888777766666554444556677778888
Q ss_pred CCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEe
Q 011197 330 RDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLV 409 (491)
Q Consensus 330 ~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~ 409 (491)
.||+++||+||+++|++.+..++....||.+|+.++|++|++.++. +|+||||||.+++|||++.++++.+++||||++
T Consensus 293 ~~~~rit~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~~~-~p~fIt~~P~~~~pfy~~~~~~~~~~~~fDL~~ 371 (453)
T TIGR00457 293 NKFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFLAEEYFK-PPVFVTNYPKDIKAFYMKLNDDGKTVAAMDLLA 371 (453)
T ss_pred CCCceeEHHHHHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHhCC-CCEEEECCCcccChhhcccCCCcCceeeeeecc
Confidence 9999999999999999887655555679999999999999987765 799999999999999987776778999999999
Q ss_pred CCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 410 PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 410 ~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
+|+|||+|||+|+|+++++.+++++.|++++.|+|||++++||+|||||||||||||+||+||.+|||||++|||++++|
T Consensus 372 ~g~gEi~~gsere~~~~~l~~~~~~~g~d~~~~~~Yl~~~~~G~pPhgG~GiGieRlvm~l~g~~~Irdv~~FPr~~~~~ 451 (453)
T TIGR00457 372 PGIGEIIGGSEREDDLDKLENRMKEMGLDTDALNWYLDLRKYGSVPHSGFGLGFERLLAYITGLENIRDAIPFPRTPGNI 451 (453)
T ss_pred CCceEEeehhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred C
Q 011197 490 E 490 (491)
Q Consensus 490 ~ 490 (491)
.
T Consensus 452 ~ 452 (453)
T TIGR00457 452 N 452 (453)
T ss_pred C
Confidence 5
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-105 Score=839.70 Aligned_cols=445 Identities=61% Similarity=1.044 Sum_probs=400.8
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc--cchhhhhhcCCCCCcEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIWI 88 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~--~~~~~~~~~~L~~gd~V~V 88 (491)
+++|+++... ++.|++|+|+|||+++|.+||++|++|||++|. +|+++..+. ..++.++. |+.||+|.|
T Consensus 3 ~~~~~~~~~~-----~~~~~~V~i~G~v~~~R~~g~~~Fi~lrD~~g~--iq~~~~~~~~~~~~~~~~~--l~~~s~v~v 73 (450)
T PRK03932 3 RVSIKDILKG-----KYVGQEVTVRGWVRTKRDSGKIAFLQLRDGSCF--KQLQVVKDNGEEYFEEIKK--LTTGSSVIV 73 (450)
T ss_pred cEEHHHhccc-----ccCCCEEEEEEEEEEEEeCCCeEEEEEECCCCc--EEEEEEcCCChHHHHHHhc--CCCCcEEEE
Confidence 4678888643 478999999999999999999999999999974 888776542 34566777 999999999
Q ss_pred EEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcE
Q 011197 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFI 168 (491)
Q Consensus 89 ~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~ 168 (491)
+|++.+++++.+++||+|++++||++|...+|++.+.++.++++++||||+|++.++++|++||.|++++|+||.++||+
T Consensus 74 ~G~v~~~~~~~~~~el~~~~i~vl~~~~~~~p~~~~~~~~~~~~~~r~l~lR~~~~~~~l~~Rs~i~~~iR~f~~~~gf~ 153 (450)
T PRK03932 74 TGTVVESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSIEFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFV 153 (450)
T ss_pred EEEEEcCCCCCCCEEEEEEEEEEccCCCCCCCCCccccChHHHhhCceeeccCHHHHHHHHHHHHHHHHHHHHHHHCCCE
Confidence 99999998877899999999999999876799998888999999999999999999999999999999999999999999
Q ss_pred EeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEE
Q 011197 169 WISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYT 248 (491)
Q Consensus 169 EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfe 248 (491)
||+||+|++++|||++++|.+.+...+ .+.+||+.++||++|||+|||++++|++||||
T Consensus 154 EV~TP~L~~~~~eg~~~~F~v~~~~~~---------------------~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~ 212 (450)
T PRK03932 154 WVDTPIITASDCEGAGELFRVTTLDLD---------------------FSKDFFGKEAYLTVSGQLYAEAYAMALGKVYT 212 (450)
T ss_pred EecCCceeccCCCCCCCceEeeccccc---------------------ccccccCCCcccccCHHHHHHHHHhccCCeEE
Confidence 999999999999999999987432100 12379999999999999999988899999999
Q ss_pred EccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhh
Q 011197 249 FGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVA 328 (491)
Q Consensus 249 I~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~ 328 (491)
||||||||+++|+||||||||||||++|+|++|+|+++|+||++ +++.+.+.+..++++.+.+.+.+..+.++.++
T Consensus 213 i~~~FR~E~~~t~rHl~EFt~lE~e~~~~~~~~~m~~~e~li~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 288 (450)
T PRK03932 213 FGPTFRAENSNTRRHLAEFWMIEPEMAFADLEDNMDLAEEMLKY----VVKYVLENCPDDLEFLNRRVDKGDIERLENFI 288 (450)
T ss_pred eeeccccCCCCCccccccccccceEEeccCHHHHHHHHHHHHHH----HHHHHHHhhHHHHHHhccccCchHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999 99988887777888877766555556666556
Q ss_pred cCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEE
Q 011197 329 ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDML 408 (491)
Q Consensus 329 ~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~ 408 (491)
+.||+++||.||+++|++.+.+++....||.+++..+|++|.++++. .|+||+|||.+++|||++.++++.+++||||+
T Consensus 289 ~~p~~rity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~-~pvfI~~yP~~~~pfy~~~~~~~~~~~~fdLl 367 (450)
T PRK03932 289 ESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHFK-KPVFVTNYPKDIKAFYMRLNPDGKTVAAMDLL 367 (450)
T ss_pred CCCceEeEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhcC-CcEEEECCCcccCcccCcCCCCCCEEEEEEEE
Confidence 78999999999999999888766655689999999999999885555 79999999999999997666555899999999
Q ss_pred eCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 409 VPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 409 ~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
+||+|||++|++|+++++++.++++++|++++.++||+++++||+|||||||||||||+|++||.+|||||++|||++++
T Consensus 368 ~~g~~El~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~~~~~G~pP~gG~GiGidRL~m~l~g~~nIrdv~~FPr~~~r 447 (450)
T PRK03932 368 APGIGEIIGGSQREERLDVLEARIKELGLNKEDYWWYLDLRRYGSVPHSGFGLGFERLVAYITGLDNIRDVIPFPRTPGR 447 (450)
T ss_pred cCCCceeCCHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCcEeehHHHHHHHHhCCCcHhhhccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 011197 489 VE 490 (491)
Q Consensus 489 ~~ 490 (491)
|.
T Consensus 448 ~~ 449 (450)
T PRK03932 448 AE 449 (450)
T ss_pred CC
Confidence 85
|
|
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-103 Score=771.25 Aligned_cols=428 Identities=59% Similarity=1.001 Sum_probs=405.9
Q ss_pred CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEE
Q 011197 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELK 105 (491)
Q Consensus 26 ~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~ 105 (491)
...|+++.+.|||+++|..|+++|++|.||++.+++|||++++ +.+. +..|++|.|+|.+.-++.+.+++|+.
T Consensus 17 ~~~g~~~~i~GWvKsvr~~~~~~Fl~i~DGs~~~~lQvVv~~~-----~~q~--la~Gt~i~~~g~l~~~~~~~q~iel~ 89 (446)
T KOG0554|consen 17 PRAGDTISIGGWVKSVRKLKKVTFLDINDGSCPSPLQVVVDSE-----QSQL--LATGTCISAEGVLKVSKGAKQQIELN 89 (446)
T ss_pred CCCCCceeecchhhhcccccceEEEEecCCCCCcceEEEechH-----Hhhh--ccccceEEEEeeEEeccchheeeeee
Confidence 5689999999999999999999999999999999999999983 2345 99999999999999987778899999
Q ss_pred EeeEEEEccCCCCCCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCC
Q 011197 106 VNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185 (491)
Q Consensus 106 ~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~ 185 (491)
|+++.+++.++++||++++.++++++|+..|||.|++..++++|+||.+..++++||++++|++|+||+||+++|||+++
T Consensus 90 ~eki~~vG~v~~~ypl~Kk~lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE 169 (446)
T KOG0554|consen 90 AEKIKVVGTVDESYPLQKKKLTPEMLRDKLHLRSRTAKVGAVLRVRSALAFATHSFFQSHDFTYINTPIITTNDCEGAGE 169 (446)
T ss_pred eeEEEEEeecCCCCCCccccCCHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHcCceEecCcEeeccCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCCCcccc
Q 011197 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLA 265 (491)
Q Consensus 186 ~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t~rHl~ 265 (491)
.|.||+.. |.+.+||++|+||++|.|||++.+++++.|||.+||+||+|+++++|||.
T Consensus 170 ~F~vtt~~----------------------d~~~~fFg~p~fLTVSgQLhlE~~a~~LsrvyTfgP~FRAEnS~tsRHLA 227 (446)
T KOG0554|consen 170 VFQVTTLT----------------------DYSKDFFGRPAFLTVSGQLHLEAMACALSRVYTFGPTFRAENSHTSRHLA 227 (446)
T ss_pred eEEEEecC----------------------cccccccCCceEEEEeceehHHHHHhhhcceEeeccceecccCCchhHHh
Confidence 99998754 24579999999999999999999999999999999999999999999999
Q ss_pred cccceeeEeccCC-HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHH
Q 011197 266 EFWMIEPELAFAD-LKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL 344 (491)
Q Consensus 266 EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l 344 (491)
||||+|.|++|++ ++|+|+++|.++++ +++.++++|.+++++..++.....+.+++..+..+|.++||.||+++|
T Consensus 228 EFwMlEaE~AF~~sl~d~m~~~e~~~K~----mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYteAie~L 303 (446)
T KOG0554|consen 228 EFWMLEAELAFAESLDDLMSCAEAYIKH----MIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTEAIELL 303 (446)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHHHHHHH
Confidence 9999999999998 99999999999999 999999999999999888888888889988888899999999999999
Q ss_pred HHhc-cccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcc
Q 011197 345 IKAK-KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREE 423 (491)
Q Consensus 345 ~~~~-~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~ 423 (491)
++.. ..|+.+++||.+|.+++|++|++.+++ .||||+|||..++||||+.++++.++.+|||++||||||+|||+||.
T Consensus 304 ~~a~t~~fk~~~kwG~~l~~ehe~yL~~~~~~-~PVfV~dYP~~iKpFYMr~n~~~~tVaa~DlLVP~vGEliGGSlREe 382 (446)
T KOG0554|consen 304 QKAVTKKFKTPPKWGIDLSTEHEKYLVEECFK-KPVFVTDYPKGIKPFYMRLNDDGKTVAAFDLLVPGVGELIGGSLREE 382 (446)
T ss_pred HHhcccccccCcccccccchhhHHHHHHHhcC-CCEEEEeccccccceEEEecCCCCeeEEEEeecccchhhcCcccchh
Confidence 9987 677888999999999999999998875 99999999999999999999888889999999999999999999998
Q ss_pred cHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011197 424 RLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491 (491)
Q Consensus 424 ~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~~ 491 (491)
| .+++++.|.++++|+||||+++||.+|||||||||||++++++|.+||||||||||.|+.+.+
T Consensus 383 ~----~~~l~e~g~~~~~~eWYldLRryG~vphgGFGlGfER~lq~~tG~~nIkd~IPFpR~~~s~~~ 446 (446)
T KOG0554|consen 383 R----KARLKERGLTREELEWYLDLRRYGSVPHGGFGLGFERMLQYLTGNDNIKDVIPFPRYPGSAEL 446 (446)
T ss_pred h----HHHHHhcCCCccccceehhhhhcCCCCCCcccccHHHHHHHHhCCcchhhceecCCCcccccC
Confidence 8 567788999999999999999999999999999999999999999999999999999999864
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-100 Score=801.51 Aligned_cols=418 Identities=29% Similarity=0.483 Sum_probs=371.3
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V~V~ 89 (491)
.+++|... +.|++|+|+|||+++|.+||++|++|||++| .||||++.+. ..++.++. |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~v~i~G~v~~~R~~g~~~Fi~lrd~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~~s~v~v~ 71 (428)
T TIGR00458 2 YSADIKPE------MDGQEVTFMGWVHEIRDLGGLIFVLLRDREG--LIQITAPAKKVSKNLFKWAKK--LNLESVVAVR 71 (428)
T ss_pred chhhCchh------hCCCEEEEEEEEEEEecCCCcEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhC--CCCCcEEEEE
Confidence 45566543 6789999999999999999999999999996 5999998653 23555666 9999999999
Q ss_pred EEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcccc---ChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCC
Q 011197 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV---SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (491)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~---~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~ 166 (491)
|++++++...+++||.+++++|+|+|..++|++.+.. +.+...++||||+|++.++++|++||.+++++|+||.++|
T Consensus 72 G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~g 151 (428)
T TIGR00458 72 GIVKIKEKAPGGFEIIPTKIEVINEAKEPLPLDPTEKVPAELDTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEG 151 (428)
T ss_pred EEEEecCCCCCcEEEEEeEEEEEecCCCCCCCCccccCCCCHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999887766789999999999999987789876543 4556669999999999999999999999999999999999
Q ss_pred cEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccCCc
Q 011197 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSN 245 (491)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~r 245 (491)
|+||+||+|++++|||+++.|++ +||+.++||++|||+||| ++++|++|
T Consensus 152 f~EV~TP~L~~~~~eg~~~~f~v------------------------------~~~~~~~yL~~Spql~~q~li~~g~~r 201 (428)
T TIGR00458 152 FIEVHTPKLVASATEGGTELFPI------------------------------TYFEREAFLGQSPQLYKQQLMAAGFER 201 (428)
T ss_pred CEEEeCCceecCCCCCCcceeee------------------------------EecCCcEEECcCHHHHHHHHHhcccCc
Confidence 99999999999999999999976 567899999999999997 67899999
Q ss_pred eEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhh
Q 011197 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLS 325 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 325 (491)
|||||||||||+++|+||||||||||||++|+|++|+|+++|+||++ ++..+.++++.++...+.. +
T Consensus 202 Vf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~dlm~~~e~li~~----i~~~~~~~~~~~~~~~~~~--------~- 268 (428)
T TIGR00458 202 VYEIGPIFRAEEHNTHRHLNEATSIDIEMAFEDHHDVMDILEELVVR----VFEDVPERCAHQLETLEFK--------L- 268 (428)
T ss_pred EEEEecccccCCCCCccchheeeEeeeeeccCCHHHHHHHHHHHHHH----HHHHHHhcchhhhhhcccc--------c-
Confidence 99999999999998889999999999999999999999999999999 9998888776555432210 0
Q ss_pred hhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccC-CCCCceEE
Q 011197 326 TVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAA 404 (491)
Q Consensus 326 ~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~ 404 (491)
.....||+|+||.||++++++.|.+ ..||.++...+|++|.+.+ . .|+||+|||++++|||++.+ +++.+++|
T Consensus 269 ~~~~~pf~rity~eA~~~l~~~g~~----~~~~~~l~~~~E~~l~~~~-~-~p~fi~d~P~~~~pfy~~~~~~~p~~~~~ 342 (428)
T TIGR00458 269 EKPEGKFVRLTYDEAIEMANAKGVE----IGWGEDLSTEAEKALGEEM-D-GLYFITDWPTEIRPFYTMPDEDNPEISKS 342 (428)
T ss_pred ccCCCCceEEEHHHHHHHHHHcCCC----CCCccccchHHHHHHHHHh-C-CCEEEEeCchhcCcccccccCCCCCEEEE
Confidence 0124689999999999999988764 4578899999999998754 3 79999999999999997554 45679999
Q ss_pred EEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCC
Q 011197 405 MDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484 (491)
Q Consensus 405 fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr 484 (491)
||||++|+ ||+||++|++++++++++++++|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||
T Consensus 343 fdl~~~g~-Ei~~g~~r~~~~~~l~~~~~~~g~~~~~~~~yl~a~~~G~pP~~G~GiGidRL~m~l~g~~~Irdv~~FPr 421 (428)
T TIGR00458 343 FDLMYRDL-EISSGAQRIHLHDLLVERIKAKGLNPEGFKDYLEAFSYGMPPHAGWGLGAERFVMFLLGLKNIREAVLFPR 421 (428)
T ss_pred EEEEeCCe-EEeeCchhcCCHHHHHHHHHHcCCChHHHHHHHHHHHCCCCCcCceeecHHHHHHHHcCCCchheEEeccC
Confidence 99999995 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011197 485 TPGSVE 490 (491)
Q Consensus 485 ~~~~~~ 490 (491)
+|+++.
T Consensus 422 ~~~r~~ 427 (428)
T TIGR00458 422 DRKRLT 427 (428)
T ss_pred CCCCCC
Confidence 999985
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-100 Score=800.79 Aligned_cols=423 Identities=31% Similarity=0.538 Sum_probs=374.8
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc--cchhhhhhcCCCCCcEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGASIW 87 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~--~~~~~~~~~~L~~gd~V~ 87 (491)
++++|+|+... ..|++|+|+|||+++|.+||++|++|||++| .||+|++++. ..++.++. |+.||+|.
T Consensus 3 ~~~~~~~l~~~------~~g~~V~i~GrV~~~R~~gk~~Fl~LrD~~g--~iQ~v~~~~~~~~~~~~~~~--L~~gs~V~ 72 (437)
T PRK05159 3 KRHLTSELTPE------LDGEEVTLAGWVHEIRDLGGIAFLILRDRSG--IIQVVVKKKVDEELFETIKK--LKRESVVS 72 (437)
T ss_pred ceeEhhhCChh------hCCCEEEEEEEeEeeecCCCeEEEEEEcCCc--EEEEEEeCCccHHHHHHHhC--CCCCcEEE
Confidence 67899999864 6899999999999999999999999999996 4999998763 23455667 99999999
Q ss_pred EEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcc---ccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhh
Q 011197 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK---RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (491)
Q Consensus 88 V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~---~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (491)
|+|++.+++...+++||++++++|||+|..++|+..+ ..+.+.++++||||+|++.++++|++||.+++++|+||.+
T Consensus 73 v~G~v~~~~~~~~~~el~~~~i~vls~a~~~~P~~~~~~~~~~~~~~~~~r~Ldlr~~~~~~~l~~Rs~i~~~iR~ff~~ 152 (437)
T PRK05159 73 VTGTVKANPKAPGGVEVIPEEIEVLNKAEEPLPLDISGKVLAELDTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYE 152 (437)
T ss_pred EEEEEEcCCCCCCCEEEEEeEEEEEeCCCCCCCCCccccccCCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987777899999999999999877887643 2356777899999999999999999999999999999999
Q ss_pred CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccC
Q 011197 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATAL 243 (491)
Q Consensus 165 ~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~ 243 (491)
+||+||+||+|++++++|+++.|++ +||+.++||++|||+||| ++++|+
T Consensus 153 ~gf~EV~TP~L~~~~~eg~~~~f~~------------------------------~~~~~~~~L~~Spql~~q~l~~~g~ 202 (437)
T PRK05159 153 NGFTEIFTPKIVASGTEGGAELFPI------------------------------DYFEKEAYLAQSPQLYKQMMVGAGF 202 (437)
T ss_pred CCCEEEeCCcccccCCCCCcceEeE------------------------------EecCCceEecCCHHHHHHHHHhcCC
Confidence 9999999999999999999999976 678999999999999997 556789
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccCC-HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhh
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIID 322 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 322 (491)
+||||||||||||+++++||||||||||||++|+| ++++|+++|+||++ +++.+.++++.++.+.+..
T Consensus 203 ~rVf~i~~~FR~E~~~t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~----i~~~~~~~~~~~i~~~~~~------- 271 (437)
T PRK05159 203 ERVFEIGPVFRAEEHNTSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRY----MYEDVAENCEKELELLGIE------- 271 (437)
T ss_pred CcEEEEeceeeCCCCCCcccchhhheeeeeeeecccHHHHHHHHHHHHHH----HHHHHHHhhHHHHHhhccC-------
Confidence 99999999999999988899999999999999998 99999999999999 9988877766555443321
Q ss_pred hhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhcccc---ccCccEEEEeCCCCCcccccccCC-C
Q 011197 323 RLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA---FGGCPVIVSDYPKEIKAFYMRQND-D 398 (491)
Q Consensus 323 ~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~---~~~~p~~i~~~P~~~~pf~~~~~~-~ 398 (491)
+ ...+.||+++||.||++++++.|.+ ..||.+++..+|+.|.+.+ +...|+||+|||.+++|||++.++ +
T Consensus 272 -~-~~~~~~f~rit~~eA~~~l~~~~~~----~~~~~~~~~~~e~~l~~~~~~~~~~~p~fi~~~P~~~~pfy~~~~~~~ 345 (437)
T PRK05159 272 -L-PVPETPIPRITYDEAIEILKSKGNE----ISWGDDLDTEGERLLGEYVKEEYGSDFYFITDYPSEKRPFYTMPDEDD 345 (437)
T ss_pred -C-CcCCCCceEeEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHHhhhcCCceEEEecCchhcCcceeeecCCC
Confidence 1 1234689999999999999887754 4578889989998886433 121389999999999999986654 4
Q ss_pred CCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccc
Q 011197 399 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRD 478 (491)
Q Consensus 399 ~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Ird 478 (491)
+.+++|||||++|+ ||+|||+|++|+++++++++++|++++.++|||+|++||+|||||||||||||+|++||.+||||
T Consensus 346 ~~~~~~fdl~~~g~-Ei~~g~~r~~d~~~~~~~~~~~g~~~~~~~~yl~a~~~G~pp~~G~giGidRl~m~~~g~~~Ird 424 (437)
T PRK05159 346 PEISKSFDLLFRGL-EITSGGQRIHRYDMLVESIKEKGLNPESFEFYLEAFKYGMPPHGGFGLGLERLTMKLLGLENIRE 424 (437)
T ss_pred CCEEEEEEEEECCE-EEeeCeEEcCCHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCCeeeEhHHHHHHHHcCCCchhE
Confidence 57999999999997 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCC
Q 011197 479 AIPFPRTPGSVE 490 (491)
Q Consensus 479 vi~FPr~~~~~~ 490 (491)
|++|||+|++|.
T Consensus 425 v~~FPr~~~~~~ 436 (437)
T PRK05159 425 AVLFPRDRHRLT 436 (437)
T ss_pred EeeccCCCCCCC
Confidence 999999999985
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-97 Score=790.95 Aligned_cols=431 Identities=25% Similarity=0.405 Sum_probs=366.4
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc----cchhhhhhcCCCCCcE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGAS 85 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~----~~~~~~~~~~L~~gd~ 85 (491)
.++.|++|... ...|++|+|+|||+++|.+|+++|++|||+++ +||+|++.+. ..++.+.. |+.||+
T Consensus 64 ~~~~i~~l~~~-----~~~g~~V~v~Grv~~~R~~Gk~~Fl~LRd~~~--~iQ~v~~~~~~~~~~~~~~~~~--l~~esi 134 (550)
T PTZ00401 64 TFIPVAVLSKP-----ELVDKTVLIRARVSTTRKKGKMAFMVLRDGSD--SVQAMAAVEGDVPKEMIDFIGQ--IPTESI 134 (550)
T ss_pred ceEEHHHCCcc-----ccCCCEEEEEEEEEEEecCCCeEEEEEEeCCc--CEEEEEECCCccCHHHHHHHhc--CCCCCE
Confidence 35888888754 23899999999999999999999999999996 5999997542 12334556 999999
Q ss_pred EEEEEEEEecC-----CCceeEEEEEeeEEEEccCCCCCCCCcccc-----------ChhhhccCccccCCChHHHHHHH
Q 011197 86 IWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPSYPIQKKRV-----------SREFLRTKAHLRPRTNTFGAVAR 149 (491)
Q Consensus 86 V~V~G~v~~~~-----~~~~~~el~~~~i~ils~~~~~~P~~~~~~-----------~~~~~r~~~~l~~R~~~~~~~~~ 149 (491)
|.|+|+|++.+ ...+++||++++++|||+|.+++|++.++. +.+...++||||+|++.++++|+
T Consensus 135 V~V~G~v~~~~~~~~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~dtrl~~R~LdlR~~~~~~i~r 214 (550)
T PTZ00401 135 VDVEATVCKVEQPITSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKESDEGAKVNFDTRLNSRWMDLRTPASGAIFR 214 (550)
T ss_pred EEEEEEEEecCccCCCCCCccEEEEeeEEEEEeCCCCCCCCCcccccccccccccccChhhhhhhhhhhhcCHHHHHHHH
Confidence 99999999743 345689999999999999987789875432 34555699999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccc
Q 011197 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (491)
Q Consensus 150 ~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~ 229 (491)
+||.+++++|+||.++||+||+||+|+++++||+++.|.+ +||+.++||+
T Consensus 215 ~rs~i~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v------------------------------~yf~~~~~L~ 264 (550)
T PTZ00401 215 LQSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKL------------------------------EYFNRFAYLA 264 (550)
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCCccccCCCCcccccccc------------------------------ccCCCCeecC
Confidence 9999999999999999999999999999999999999976 6889999999
Q ss_pred cchhhHHHHH-hccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Q 011197 230 VSGQLNAETY-ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQVRYILDNCKE 307 (491)
Q Consensus 230 ~Spql~lql~-~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~~~~~~~~~~ 307 (491)
||||||||++ ++|++||||||||||||+++|+||||||||||||++|. +|+++|+++|+|+.+ ++..+.+. ..
T Consensus 265 qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RHl~EFt~Le~E~~~~~~y~evm~~~e~l~~~----i~~~l~~~-~~ 339 (550)
T PTZ00401 265 QSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNY----IFERLATH-TK 339 (550)
T ss_pred CCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCCccchhhhhhhhHhcCCHHHHHHHHHHHHHH----HHHHHHcc-ch
Confidence 9999999865 57899999999999999999999999999999999986 799999999999999 88877654 22
Q ss_pred cccccchhh-------c---------------------chhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccc
Q 011197 308 DMDFFNTWI-------E---------------------KGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGC 359 (491)
Q Consensus 308 ~l~~~~~~~-------~---------------------~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~ 359 (491)
++......+ . ..+.+.+.+ .+.+|+||+|.||+++|++.+. ..+.|+.
T Consensus 340 ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~rl~y~eai~lL~~~~~---~~~~~~~ 415 (550)
T PTZ00401 340 ELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHN-MDSRMLRINYMHCIELLNTVLE---EKMAPTD 415 (550)
T ss_pred hhhhhccccccccccccccHHHHHhcCCCcccccccchHHHHHHHHh-cCCCcccccHHHHHHHHHHhcc---cCCCccc
Confidence 332221000 0 001122222 4567999999999999998742 2246788
Q ss_pred ccchHHhhhhc---cccccCccEEEEe-CCCCCcccccccC-CCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH
Q 011197 360 DLQSEHERYLT---EEAFGGCPVIVSD-YPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 434 (491)
Q Consensus 360 ~l~~~~e~~l~---~~~~~~~p~~i~~-~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~ 434 (491)
|++...|++|. +..++ .|+||+| ||.+++|||++.+ +++.+++|||||++| +||+||++|+||+++|.+++++
T Consensus 416 dl~~~~E~~L~~~v~~~~~-~~~fI~d~yP~~~rpFY~~~~~~dp~~s~~fDlf~~G-~EI~sG~qR~~d~~~l~~r~~~ 493 (550)
T PTZ00401 416 DINTTNEKLLGKLVKERYG-TDFFISDRFPSSARPFYTMECKDDERFTNSYDMFIRG-EEISSGAQRIHDPDLLLARAKM 493 (550)
T ss_pred ccCchHHHHHHHHHHHhcC-CCEEEECCCChhhCchhcCcCCCCCCEEEEEEEEeCC-EEEccchhhcCCHHHHHHHHHH
Confidence 99999999875 33344 7999998 9999999996544 566799999999999 5999999999999999999999
Q ss_pred cCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 435 LKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 435 ~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
+|++++.++|||+|++||+|||||||||||||+|++||..|||+|++|||+|+|+.
T Consensus 494 ~G~d~~~~~~Yl~a~~~G~PPhgG~GiGlERLvM~~lg~~nIR~v~lFPRdp~rl~ 549 (550)
T PTZ00401 494 LNVDLTPIKEYVDSFRLGAWPHGGFGVGLERVVMLYLGLSNVRLASLFPRDPQRTT 549 (550)
T ss_pred cCCCchhhHHHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeecCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999984
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-97 Score=788.53 Aligned_cols=427 Identities=27% Similarity=0.449 Sum_probs=366.3
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc-----chhhhhhcCCCCCc
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVKSGLITTGA 84 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~-----~~~~~~~~~L~~gd 84 (491)
+++.|++|... +.|++|+|+|||+++|.+|+++|++|||+++ +||+|+..+.. .++.+.. |+.||
T Consensus 68 ~~~~i~~l~~~------~~g~~V~v~Grv~~~R~~gk~~Fl~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es 137 (530)
T PLN02850 68 EWTDVSDLGEE------LAGSEVLIRGRVHTIRGKGKSAFLVLRQSGF--TVQCVVFVSEVTVSKGMVKYAKQ--LSRES 137 (530)
T ss_pred eEeEhhhcchh------hCCCEEEEEEEEEEEccCCCeEEEEEEeCCc--CEEEEEECCccccCHHHHHHHhC--CCCCC
Confidence 45788888654 7899999999999999999999999999985 59999976532 1233556 99999
Q ss_pred EEEEEEEEEecC----CCceeEEEEEeeEEEEccCCCCCCCCccc--------------------cChhhhccCccccCC
Q 011197 85 SIWIQGNVVPSQ----GSKQKVELKVNKIVLVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPR 140 (491)
Q Consensus 85 ~V~V~G~v~~~~----~~~~~~el~~~~i~ils~~~~~~P~~~~~--------------------~~~~~~r~~~~l~~R 140 (491)
+|.|+|+|++.+ +.++++||++++++|+|+|.+++|++.++ .+.+...++||||+|
T Consensus 138 ~V~V~G~v~~~~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR 217 (530)
T PLN02850 138 VVDVEGVVSVPKKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLR 217 (530)
T ss_pred EEEEEEEEEccCcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhc
Confidence 999999999642 23458999999999999998779987543 123455599999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 141 TNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 141 ~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
++.++++|++||.+++++|+||.++||+||+||+|+++++||++++|.+ +
T Consensus 218 ~~~~qaifrirs~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v------------------------------~ 267 (530)
T PLN02850 218 TPANQAIFRIQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL------------------------------D 267 (530)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee------------------------------c
Confidence 9999999999999999999999999999999999999999999999976 6
Q ss_pred ccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHH
Q 011197 221 FFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQV 298 (491)
Q Consensus 221 ~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~ 298 (491)
||++++||+|||||||| ++++|++||||||||||||+++|+|||||||||||||+|. +|+|+|+++|+|+++ ++
T Consensus 268 yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~----i~ 343 (530)
T PLN02850 268 YKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVA----IF 343 (530)
T ss_pred cCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCCCccchhhccchhhhhhhcCHHHHHHHHHHHHHH----HH
Confidence 88999999999999998 5678999999999999999999999999999999999998 599999999999999 99
Q ss_pred HHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhcc---cccc
Q 011197 299 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFG 375 (491)
Q Consensus 299 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~---~~~~ 375 (491)
..+.+.+..++..+....+. +.+ ++++ +++++||+||+++|++.|.+. .++.|++.++|+.|.. ..++
T Consensus 344 ~~l~~~~~~el~~i~~~~~~---~~~-~~~~-~~~rit~~ea~~~L~~~g~~~----~~~~dl~~~~E~~Lg~~v~~~~~ 414 (530)
T PLN02850 344 DGLNERCKKELEAIREQYPF---EPL-KYLP-KTLRLTFAEGIQMLKEAGVEV----DPLGDLNTESERKLGQLVKEKYG 414 (530)
T ss_pred HHHHhhhhhhHHhhcccCCc---chh-hhcC-CcccCCHHHHHHHHHHcCCCC----CCCCCcchHHHHHHHHHHHHhcC
Confidence 88887776665544321110 111 1223 678999999999999988653 3466888999988753 1233
Q ss_pred CccEEEEeCCCCCcccccccC-CCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCC
Q 011197 376 GCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV 454 (491)
Q Consensus 376 ~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~p 454 (491)
..++||+|||..++|||++.+ +|+.+++|||||++| +||+||++|+||++.+.++++++|++++.++|||+|++||+|
T Consensus 415 ~~~~ii~~yP~~~~pfY~~~~~~d~~~~~~fDl~i~G-~EI~~G~qr~~d~~~l~~r~~~~g~d~~~~~~Yl~a~~~G~p 493 (530)
T PLN02850 415 TDFYILHRYPLAVRPFYTMPCPDDPKYSNSFDVFIRG-EEIISGAQRVHDPELLEKRAEECGIDVKTISTYIDSFRYGAP 493 (530)
T ss_pred CCeEEEECCccccCchhccccCCCCCeEEEEEEEeCC-EEEeccceecCCHHHHHHHHHHcCCChHHHHHHHHHHHcCCC
Confidence 246788999999999986554 566799999999999 599999999999999999999999999999999999999999
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
||||||||||||+||+||.+|||||++|||+|+||.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FPR~p~rl~ 529 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRLA 529 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecCCCCCCCC
Confidence 999999999999999999999999999999999984
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-94 Score=768.73 Aligned_cols=438 Identities=20% Similarity=0.273 Sum_probs=374.6
Q ss_pred CCcccceeeccccCCccc---CCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc-----chhhhh-
Q 011197 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-----GYDQVK- 76 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~-----~~~~~~- 76 (491)
.+|.++++|+++...|.+ +++..+++|+|+|||+++|.+||++|++|||++| .||||++.+.. .|+.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~Gk~~F~~LrD~~g--~iQv~~~~~~~~~~~~~~~~~~~ 159 (553)
T PLN02502 82 YKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFGKLAFYDLRDDGG--KIQLYADKKRLDLDEEEFEKLHS 159 (553)
T ss_pred CCCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCCCeEEEEEecCCc--cEEEEEECccccchhHHHHHHHh
Confidence 357889999999887742 5556789999999999999999999999999996 59999986532 255543
Q ss_pred hcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHH
Q 011197 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRN 152 (491)
Q Consensus 77 ~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs 152 (491)
. |+.||+|.|+|++.+++++ ++||.+++++||++|. .|++.+.++ .+...++||||++ ++..+++|++||
T Consensus 160 ~--l~~gdiV~V~G~~~~t~~g--elel~~~~i~vLs~~l--~plP~k~~~~~d~e~r~r~RyLdl~~n~~~~~i~r~Rs 233 (553)
T PLN02502 160 L--VDRGDIVGVTGTPGKTKKG--ELSIFPTSFEVLTKCL--LMLPDKYHGLTDQETRYRQRYLDLIANPEVRDIFRTRA 233 (553)
T ss_pred C--CCCCcEEEEEEEEEecCCC--CEEEEEeEEEEEeccC--CCCCcccccccchhhhccchhhhhhcCHHHHHHHHHHH
Confidence 5 9999999999999999865 8999999999999997 556655444 3444489999995 889999999999
Q ss_pred HHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccch
Q 011197 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSG 232 (491)
Q Consensus 153 ~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Sp 232 (491)
+|++++|+||.++||+||+||+|+++++++++++|. |++ +||+.++||++||
T Consensus 234 ~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~Sp 285 (553)
T PLN02502 234 KIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFV-THH---------------------------NDLNMDLYLRIAT 285 (553)
T ss_pred HHHHHHHHHHHHCCCEEEECCeeeccCCCcccccee-eec---------------------------ccCCcceeeecCH
Confidence 999999999999999999999999988776778995 332 5689999999999
Q ss_pred hhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-----
Q 011197 233 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK----- 306 (491)
Q Consensus 233 ql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~----- 306 (491)
||||| |+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++ ++..+.+.++
T Consensus 286 el~lK~L~v~g~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d~~dlm~~~E~li~~----i~~~v~~~~~~~~~~ 360 (553)
T PLN02502 286 ELHLKRLVVGGFERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYADYNDMMELTEEMVSG----MVKELTGSYKIKYHG 360 (553)
T ss_pred HHHHHHHHHhccCCEEEEcCeeeCCCCC-CccccceeehhhhhhcCCHHHHHHHHHHHHHH----HHHHHhcccccccCC
Confidence 99995 7899999999999999999996 59999999999999999999999999999999 9988876543
Q ss_pred ccccccchhhcchhhhhhhhhhcCCCcc-ccHHHHHHHHH----HhccccccccccccccchHHhhhhccccccCccEEE
Q 011197 307 EDMDFFNTWIEKGIIDRLSTVAERDFVQ-LSYTDAIELLI----KAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIV 381 (491)
Q Consensus 307 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~-it~~ea~~~l~----~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i 381 (491)
.++++..+|.+.++.+.++++.|.+++. ++++++.+.|+ +.++++.....||..++..++.++.+.+ . +|+||
T Consensus 361 ~~i~~~~p~~rit~~e~l~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~ve~~l-~-~PtFV 438 (553)
T PLN02502 361 IEIDFTPPFRRISMISLVEEATGIDFPADLKSDEANAYLIAACEKFDVKCPPPQTTGRLLNELFEEFLEETL-V-QPTFV 438 (553)
T ss_pred ccccCCCCceeccHHHHHHHHhCCCCCcCCCHHHHHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHHHHhhc-C-CCEEE
Confidence 3566667888889999999999988887 88888876554 4455544555688888899999888755 4 79999
Q ss_pred EeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc----CC--Ccc-c-HHHHHHHHhcCC
Q 011197 382 SDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL----KL--NRD-S-YWWYLDLRHYGS 453 (491)
Q Consensus 382 ~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~----g~--~~~-~-~~~yl~~~~~G~ 453 (491)
+|||..++|||+..++++++++|||||++|+ ||+|||++++|+.+|++++.++ +. +.+ . .++||+|++|||
T Consensus 439 ~dyP~~~splak~~~~~p~~~erFELfi~G~-Eiangy~ELnDp~~Qr~rf~~q~~~~~~~~~~~~~~De~fl~aleyGm 517 (553)
T PLN02502 439 LDHPVEMSPLAKPHRSKPGLTERFELFINGR-ELANAFSELTDPVDQRERFEEQVKQHNAGDDEAMALDEDFCTALEYGL 517 (553)
T ss_pred ECCccccCcccccCCCCCCeEEEEEEEeCCe-EEccchhhccCHHHHHHHHHHHHHHhhcCCccccccHHHHHHHHHcCC
Confidence 9999999999987777888999999999998 9999999999999888877542 22 211 1 377999999999
Q ss_pred CCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 454 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||||||||||||+|+|||..|||||++||+...
T Consensus 518 PP~gG~GiGiDRLvMlltg~~sIrdVi~FP~~k~ 551 (553)
T PLN02502 518 PPTGGWGLGIDRLVMLLTDSASIRDVIAFPAMKP 551 (553)
T ss_pred CCCceEEehHHHHHHHHcCCcchheeecCCcCCC
Confidence 9999999999999999999999999999998653
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-94 Score=765.69 Aligned_cols=427 Identities=20% Similarity=0.311 Sum_probs=352.1
Q ss_pred CCcccceeeccccCCccc---C-CCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhhhhc
Q 011197 6 GEFRKKLKIVDVKGGPNE---G-LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSG 78 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~-~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~~~~ 78 (491)
.+|.++++++++...|.+ + ....+++|+|+|||+++|.+||++|++|+|++| +||+|++++.. .++..+.
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~gk~~F~~l~D~~g--~iQ~~~~~~~~~~~~~~~~~~- 102 (496)
T TIGR00499 26 NKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMGKATFITLQDESG--QIQLYVNKDDLPEDFYEFDEY- 102 (496)
T ss_pred CCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCCCeEEEEEEcCCc--cEEEEEECCcCcHHHHHHHHh-
Confidence 367888999999877742 1 134588999999999999999999999999996 59999987542 2333331
Q ss_pred CCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccCh---hhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 79 ~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~---~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
.|+.||+|.|+|++.+++++ ++||.|++++|||+|. .|+|.+.++. +...++||||+| ++.++++|++||+|
T Consensus 103 ~l~~gd~V~v~G~~~~t~~g--elel~~~~i~ilsk~~--~plP~k~~~~~d~e~r~r~R~Ldl~~n~~~~~~~r~Rs~i 178 (496)
T TIGR00499 103 LLDLGDIIGVTGYPFKTKTG--ELSVHVTELQILTKAL--RPLPDKFHGLTDQETRYRQRYLDLIVNPDSRQTFLVRSKI 178 (496)
T ss_pred cCCCCCEEEEEEEEEECCCC--cEEEEeeEEEEEecCC--CCCCccccccCChhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 28999999999999998864 8999999999999997 4555554433 555589999999 57999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||++||||
T Consensus 179 ~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t-~~---------------------------~~~~~~~yLriSpEL 230 (496)
T TIGR00499 179 IKAIRRFLDDRGFIEVETPMLQVIPGGANARPFIT-HH---------------------------NALDMDLYLRIAPEL 230 (496)
T ss_pred HHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEe-ec---------------------------ccCCCceEEecCHHH
Confidence 99999999999999999999999887777799964 32 357899999999999
Q ss_pred HHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 011197 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFN 313 (491)
Q Consensus 235 ~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~ 313 (491)
||+ |+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++ ++..+.+++...+.-
T Consensus 231 ylKrlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~----i~~~l~~~~~~~~~~-- 303 (496)
T TIGR00499 231 YLKRLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYADYEDLMDLTENLFKF----LAQELLGTTKITYGE-- 303 (496)
T ss_pred HHHHHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcCCHHHHHHHHHHHHHH----HHHHHhcccceecCc--
Confidence 995 8899999999999999999995 69999999999999999999999999999999 998887655432110
Q ss_pred hhhcchhhhhhhhhhcCCCccccHHHHHHHHHH-hccc--------------------c-ccccccccccchHHhhhhcc
Q 011197 314 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-AKKK--------------------F-EFLVKWGCDLQSEHERYLTE 371 (491)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-~~~~--------------------~-~~~~~~g~~l~~~~e~~l~~ 371 (491)
....++.||+|+||.||++++.+ .|++ + .....||..+...++.++.+
T Consensus 304 ----------~~~~~~~pf~rit~~eai~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ve~ 373 (496)
T TIGR00499 304 ----------LEIDFKKPFKRITMVEAIKKYDMETGIDFDDLKDFETAKALAKKIGIEVAEKSLTLGHILNELFEQFLEH 373 (496)
T ss_pred ----------eeccCCCCceEEEHHHHHHHHHHhcCCCchhcCCHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHHHHHh
Confidence 00123457788888888776642 2322 1 11223455667778887765
Q ss_pred ccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHH------HcCCCcccH--H
Q 011197 372 EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD------ELKLNRDSY--W 443 (491)
Q Consensus 372 ~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~------~~g~~~~~~--~ 443 (491)
.+ . +|+||+|||.+++||++..++++.+++|||||++|+ ||+|||+|++|+.+|++++. +.|.+++.+ +
T Consensus 374 ~l-~-~P~fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~~q~~rf~~q~~~k~~g~~~~~~~de 450 (496)
T TIGR00499 374 TL-I-QPTFITHYPAEISPLAKRNPSNPEFTDRFELFIAGK-EIANAFSELNDPLDQRERFEQQVAEKEAGDDEAQFVDE 450 (496)
T ss_pred cc-C-CCEEEECCchhcCcccccCCCCCCeEEEEEEEeCCe-EEeccccccCCHHHHHHHHHHHHHHHHcCCCccccchH
Confidence 44 4 799999999999999876556667999999999997 99999999999999998865 457776654 8
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 444 ~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||+|++||||||||||||||||+|++||.+|||||++||+.+.
T Consensus 451 ~yl~a~~~G~PP~gG~GiGiDRLvMlltg~~~Irdvi~FP~~~~ 494 (496)
T TIGR00499 451 DFVEALEYGMPPTGGLGIGIDRLVMLLTDSKSIRDVILFPAMRP 494 (496)
T ss_pred HHHHHHHcCCCCCceEEEhHHHHHHHHhCCCcHheeccCCCCCC
Confidence 99999999999999999999999999999999999999999875
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-94 Score=761.24 Aligned_cols=429 Identities=21% Similarity=0.319 Sum_probs=348.9
Q ss_pred CCcccceeeccccCCccc---C-CCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhc
Q 011197 6 GEFRKKLKIVDVKGGPNE---G-LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSG 78 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~-~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~ 78 (491)
.+|.++++|+++...|.+ + ....+++|+|+|||+++|.+||++|++|||++| +||||++++. ..|+.++.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g~~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~- 103 (491)
T PRK00484 27 NKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMGKASFATLQDGSG--RIQLYVSKDDVGEEALEAFKK- 103 (491)
T ss_pred CCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCCceEEEEEEcCCc--cEEEEEECCcCCHHHHHHHhc-
Confidence 467888999999877643 1 112347899999999999999999999999996 5999998763 23556666
Q ss_pred CCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcccc-ChhhhccCccccCC-ChHHHHHHHHHHHHHH
Q 011197 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRV-SREFLRTKAHLRPR-TNTFGAVARVRNALAY 156 (491)
Q Consensus 79 ~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~-~~~~~r~~~~l~~R-~~~~~~~~~~Rs~i~~ 156 (491)
|+.||+|.|+|++.+++++ ++||.|++++|||+|..++|...... +.+...++||||+| ++.++++|++||++++
T Consensus 104 -l~~g~~v~v~G~v~~t~~g--e~el~~~~~~vls~~~~plP~~~~~~~~~~~r~r~R~lDl~~~~~~~~~~r~Rs~i~~ 180 (491)
T PRK00484 104 -LDLGDIIGVEGTLFKTKTG--ELSVKATELTLLTKSLRPLPDKFHGLTDVETRYRQRYVDLIVNPESRETFRKRSKIIS 180 (491)
T ss_pred -CCCCCEEEEEEEEEEcCCC--cEEEEEeEEEEEeccCCCCCcccccccchhhhccceeeehhcCHHHHHHHHHHHHHHH
Confidence 9999999999999998864 89999999999999974444432222 23444489999997 7899999999999999
Q ss_pred HHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHH
Q 011197 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNA 236 (491)
Q Consensus 157 ~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~l 236 (491)
++|+||.++||+||+||+|+++++++++++|.+ +. +||+.++||++||||||
T Consensus 181 ~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t-~~---------------------------~~~~~~~yL~~Spql~l 232 (491)
T PRK00484 181 AIRRFLDNRGFLEVETPMLQPIAGGAAARPFIT-HH---------------------------NALDIDLYLRIAPELYL 232 (491)
T ss_pred HHHHHHHHCCCEEEECCceeccCCCccceeeee-cc---------------------------ccCCCceEeccCHHHHH
Confidence 999999999999999999998877777799953 22 67899999999999999
Q ss_pred H-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchh
Q 011197 237 E-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTW 315 (491)
Q Consensus 237 q-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~ 315 (491)
| ++++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||++ +++.+.++. .+.+.+..
T Consensus 233 k~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d~~d~m~~~E~li~~----i~~~~~~~~--~i~~~~~~ 305 (491)
T PRK00484 233 KRLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYADYNDMMDLTEELIRH----LAQAVLGTT--KVTYQGTE 305 (491)
T ss_pred HHHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCCHHHHHHHHHHHHHH----HHHHHhCCc--eEecCCEe
Confidence 6 7889999999999999999996 69999999999999999999999999999999 988887542 23322110
Q ss_pred hcchhhhhhhhhhcCCCccccHHHHHHHHHH-----------------hccccccccccccccchHHhhhhccccccCcc
Q 011197 316 IEKGIIDRLSTVAERDFVQLSYTDAIELLIK-----------------AKKKFEFLVKWGCDLQSEHERYLTEEAFGGCP 378 (491)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-----------------~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p 378 (491)
..++.||+++||.||++.+.. .+++......+|..++..++.++.+ .+. +|
T Consensus 306 ----------~~~~~pf~rity~eai~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ve~-~~~-~P 373 (491)
T PRK00484 306 ----------IDFGPPFKRLTMVDAIKEYTGVDFDDMTDEEARALAKELGIEVEKSWGLGKLINELFEEFVEP-KLI-QP 373 (491)
T ss_pred ----------ecCCCCceEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh-hcC-Cc
Confidence 013458888888888876532 1221111112344455556666444 444 89
Q ss_pred EEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH------cCCCcc-cH-HHHHHHHh
Q 011197 379 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRD-SY-WWYLDLRH 450 (491)
Q Consensus 379 ~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~------~g~~~~-~~-~~yl~~~~ 450 (491)
+||+|||.+++|||+..++++.+++|||||++|+ ||+|||+|++|+.+|++++++ .|.++. .+ +|||+|++
T Consensus 374 ~Fi~dyP~~~~pf~k~~~~~~~~~~rFdL~i~G~-Ei~ngy~El~dp~~q~~r~~~q~~~~~~~~~e~~~~d~~yl~a~~ 452 (491)
T PRK00484 374 TFITDYPVEISPLAKRHREDPGLTERFELFIGGR-EIANAFSELNDPIDQRERFEAQVEAKEAGDDEAMFMDEDFLRALE 452 (491)
T ss_pred EEEECCChHHhhhhccCCCCCCeEEEEEEEECCE-EEecchhhhCCHHHHHHHHHHHHHHHHcCCCcccccHHHHHHHHH
Confidence 9999999999999987767778999999999998 999999999999999998864 244333 23 79999999
Q ss_pred cCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 451 ~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
||+|||||||||||||+|++||.+|||||++||+.+..
T Consensus 453 ~G~PP~gG~GiGiDRLvm~ltg~~~Irdvi~FP~~~~~ 490 (491)
T PRK00484 453 YGMPPTGGLGIGIDRLVMLLTDSPSIRDVILFPLMRPE 490 (491)
T ss_pred CCCCCCCeEEEeHHHHHHHHhCCCcHHhcccCCCCCCC
Confidence 99999999999999999999999999999999998753
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-93 Score=759.02 Aligned_cols=425 Identities=20% Similarity=0.315 Sum_probs=345.1
Q ss_pred CCcccceeeccccCCccc--CC--CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchh-hhhh
Q 011197 6 GEFRKKLKIVDVKGGPNE--GL--DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVKS 77 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~--~~--~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~-~~~~ 77 (491)
.+|..+++++++...|++ +. ...+++|+|+|||+++|.+||++|++|+|++| +||||++++. ..|. .++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~Gk~~F~~lrD~~g--~iQ~~~~~~~~~~~~~~~~~~~ 115 (505)
T PRK12445 38 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFKK 115 (505)
T ss_pred CCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCCCcEEEEEEeCCc--cEEEEEECCccchhhHHHHHhc
Confidence 367889999999877742 11 24478899999999999999999999999986 5999998653 2343 3456
Q ss_pred cCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHH
Q 011197 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNA 153 (491)
Q Consensus 78 ~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~ 153 (491)
|+.||+|+|+|++.+++++ ++||.|++++|||+|. .|+|.+.++ .+...++||||+| ++..+++|++||+
T Consensus 116 --l~~Gd~V~v~G~~~~t~~g--elel~~~~~~llsk~~--~plP~~~~~~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~ 189 (505)
T PRK12445 116 --WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKAL--RPLPDKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSK 189 (505)
T ss_pred --CCCCCEEEEEEEEEecCCC--cEEEEEeEEEEEecCC--CCCCcccccccChhhhhhhhhhhhhcCHHHHHHHHHHHH
Confidence 9999999999999998864 8999999999999997 455554433 3444489999998 5899999999999
Q ss_pred HHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchh
Q 011197 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (491)
Q Consensus 154 i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spq 233 (491)
|++++|+||.++||+||+||+|++..+++++.+|. |++ ++|+.++||++|||
T Consensus 190 i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~-t~~---------------------------~~~~~~~yL~~SpE 241 (505)
T PRK12445 190 ILAAIRQFMVARGFMEVETPMMQVIPGGASARPFI-THH---------------------------NALDLDMYLRIAPE 241 (505)
T ss_pred HHHHHHHHHHHCCCEEeeCCeeEecCCCCccccee-ccc---------------------------ccCCcceeeecCHH
Confidence 99999999999999999999999876666667884 433 56789999999999
Q ss_pred hHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc
Q 011197 234 LNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFF 312 (491)
Q Consensus 234 l~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~ 312 (491)
|||+ |+++|++||||||||||||++ |.||||||||||||++|+||+|+|+++|+||++ +++.+.+.+.... .
T Consensus 242 LylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~----l~~~~~~~~~~~~--~ 314 (505)
T PRK12445 242 LYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELTESLFRT----LAQEVLGTTKVTY--G 314 (505)
T ss_pred HHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCCHHHHHHHHHHHHHH----HHHHHhcccceec--C
Confidence 9995 889999999999999999999 899999999999999999999999999999999 8888776443211 0
Q ss_pred chhhcchhhhhhhhhhcCCCccccHHHHHHHHH-------------------Hhcccccccccccc-ccchHHhhhhccc
Q 011197 313 NTWIEKGIIDRLSTVAERDFVQLSYTDAIELLI-------------------KAKKKFEFLVKWGC-DLQSEHERYLTEE 372 (491)
Q Consensus 313 ~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~-------------------~~~~~~~~~~~~g~-~l~~~~e~~l~~~ 372 (491)
... -.+..||+|+||.||++.+. +.+++.. ..|+. .+-..+...++++
T Consensus 315 ~~~----------i~~~~pf~rit~~eai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~vE~ 382 (505)
T PRK12445 315 EHV----------FDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVE--KSWGLGRIVTEIFDEVAEA 382 (505)
T ss_pred cee----------ccCCCCceEEEHHHHHHHHhCCCCccccCCHHHHHHHHHHcCCCCC--CCCCHHHHHHHHHHHHHHh
Confidence 000 01234666777777766553 2233221 12221 1333344445555
Q ss_pred cccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc------CCCcccH--HH
Q 011197 373 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDSY--WW 444 (491)
Q Consensus 373 ~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~------g~~~~~~--~~ 444 (491)
.+. +|+||+|||.+++|||+..++++.+++|||||++|+ ||+||++|++|+++|+++++++ |.+++.. +|
T Consensus 383 ~l~-~P~Fv~dyP~~~splak~~~~~p~~~~rFeL~i~G~-Ei~ng~~El~dp~eq~~rf~~q~~~~~~g~~e~~~~de~ 460 (505)
T PRK12445 383 HLI-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDED 460 (505)
T ss_pred hcC-CCEEEECCCchhCcccccCCCCCCceEEEEEEeCCE-EEcccccccCCHHHHHHHHHHHHHHHhcCCCccccchHH
Confidence 555 899999999999999987667778999999999997 9999999999999999998743 6655543 89
Q ss_pred HHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 445 YLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 445 yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
||+|++||+|||||||||||||+|++||..|||||++||+.+.
T Consensus 461 yl~al~yG~PP~gG~GiGiDRLvMlltg~~sIrdvi~FP~~~~ 503 (505)
T PRK12445 461 YVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRP 503 (505)
T ss_pred HHHHHHcCCCCCCeEEEhHHHHHHHHcCCCchheEecCCCCCC
Confidence 9999999999999999999999999999999999999999875
|
|
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-92 Score=757.98 Aligned_cols=440 Identities=16% Similarity=0.251 Sum_probs=371.0
Q ss_pred CCcccceeeccccCCccc---CCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc-----cchhh-h
Q 011197 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQ-V 75 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~-----~~~~~-~ 75 (491)
.+|.++++++++...|.+ ++...++.|+|+|||+++|.+| |++|++|+|.+| +||||++++. ..|+. .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F~~L~d~~g--~iQv~~~~~~~~~~~~~~~~~~ 183 (585)
T PTZ00417 106 HKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRFFDLVGDGA--KIQVLANFAFHDHTKSNFAECY 183 (585)
T ss_pred CCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEEEEEEeCCe--eEEEEEECCccCCCHHHHHHHH
Confidence 357888999999877752 2223456799999999999998 799999999886 5999998652 23444 3
Q ss_pred hhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccChhhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 76 KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 76 ~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
+. |+.||+|+|+|.+.+++++ ++||.++++++|++|..++|..-...+.+...++||||+| ++..+++|++||+|
T Consensus 184 ~~--l~~Gd~V~V~G~~~~t~~g--el~i~~~~i~llsk~l~~lP~~~g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~I 259 (585)
T PTZ00417 184 DK--IRRGDIVGIVGFPGKSKKG--ELSIFPKETIILSPCLHMLPMKYGLKDTEIRYRQRYLDLMINESTRSTFITRTKI 259 (585)
T ss_pred hc--CCCCCEEEEEeEEcCCCCc--eEEEEEEEEEEEecCCCCCCcccCCCCcccccccchhhhhcCHHHHHHHHHHHHH
Confidence 55 9999999999999988754 8999999999999998666654111233444489999998 78999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++.+++++++|. |++ ++++.++||++||||
T Consensus 260 i~aiR~Ff~~rGFlEVeTPiL~~~~GGA~a~PF~-T~~---------------------------n~~d~~lYLriSpEL 311 (585)
T PTZ00417 260 INYLRNFLNDRGFIEVETPTMNLVAGGANARPFI-THH---------------------------NDLDLDLYLRIATEL 311 (585)
T ss_pred HHHHHHHHHHCCeEEEeCCeeeccCCcccceeEE-ecc---------------------------cCCCcceEEeecHHH
Confidence 9999999999999999999999987666678995 443 346889999999999
Q ss_pred HH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------
Q 011197 235 NA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK------- 306 (491)
Q Consensus 235 ~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~------- 306 (491)
|| +|+++|++||||||||||||+++ +||||||||||||++|+||+|+|+++|+||++ ++..+.+...
T Consensus 312 ~lKrLlvgG~~rVfeIgp~FRnE~~~-~rHnpEFTmlE~y~ay~dy~dlM~l~E~Li~~----v~~~v~g~~~~~~~~~g 386 (585)
T PTZ00417 312 PLKMLIVGGIDKVYEIGKVFRNEGID-NTHNPEFTSCEFYWAYADFYDLIKWSEDFFSQ----LVMHLFGTYKILYNKDG 386 (585)
T ss_pred HHHHHHHhCCCCEEEEcccccCCCCC-CCccceeeeeeeeeecCCHHHHHHHHHHHHHH----HHHHhcCcceeeecccc
Confidence 99 58899999999999999999995 79999999999999999999999999999999 8888765421
Q ss_pred -----ccccccchhhcchhhhhhhhhhcCCCcc-----ccHHHHHHHHHHhccccccccccccccchHHhhhhccccccC
Q 011197 307 -----EDMDFFNTWIEKGIIDRLSTVAERDFVQ-----LSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGG 376 (491)
Q Consensus 307 -----~~l~~~~~~~~~~~~~~l~~~~~~~~~~-----it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~ 376 (491)
.++++..+|.+.++.+++++++|.++.. .+++++.+++++.|+++.....||..++..++.++.+.+..
T Consensus 387 ~~~~~~~i~~~~pf~rit~~ea~~~~~g~~~~~~~~~~~~~~el~~~l~~~g~~~~~~~~~~~~l~~l~e~~vE~~l~~- 465 (585)
T PTZ00417 387 PEKDPIEIDFTPPYPKVSIVEELEKLTNTKLEQPFDSPETINKMINLIKENKIEMPNPPTAAKLLDQLASHFIENKYPN- 465 (585)
T ss_pred cccccccccCCCCceeccHHHHHHHHhCCCccccccccCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhhCC-
Confidence 2455666788888899999998877642 58999999999988876655567778888888888876653
Q ss_pred ccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH------cCCCcccH---HHHHH
Q 011197 377 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY---WWYLD 447 (491)
Q Consensus 377 ~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~------~g~~~~~~---~~yl~ 447 (491)
+|+||+|||.+++|||+...+++++++|||||++|+ ||+||+++++|+.+|++++.+ .| +++.+ ++||+
T Consensus 466 ~PtFI~dyP~~~sPLak~~~~dp~v~eRFELfi~G~-EiangysELnDp~eQr~Rf~~q~~~r~~g-~~e~~~~Dedfl~ 543 (585)
T PTZ00417 466 KPFFIIEHPQIMSPLAKYHRSKPGLTERLEMFICGK-EVLNAYTELNDPFKQKECFSAQQKDREKG-DAEAFQFDAAFCT 543 (585)
T ss_pred CcEEEECCChhhCchhhhcCCCCCeEEeEEeEECCE-EEccCcchhcCHHHHHHHHHHHHHHHHcC-CCcccccHHHHHH
Confidence 699999999999999986666778999999999997 999999999999999886643 45 43433 44999
Q ss_pred HHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 448 LRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 448 ~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|++||||||||||||||||+|++||.+|||||++||+.+.
T Consensus 544 AleyGmPPtgG~GiGIDRLvMlltg~~sIrdVi~FP~~r~ 583 (585)
T PTZ00417 544 SLEYGLPPTGGLGLGIDRITMFLTNKNCIKDVILFPTMRP 583 (585)
T ss_pred HHHcCCCCCceEEEcHHHHHHHHcCCcchheeecCCCCCC
Confidence 9999999999999999999999999999999999999875
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-92 Score=752.35 Aligned_cols=443 Identities=16% Similarity=0.225 Sum_probs=359.8
Q ss_pred CCCCCcccceeeccccCCccc---CCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc----chhhh
Q 011197 3 SKVGEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE----GYDQV 75 (491)
Q Consensus 3 ~~~~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~----~~~~~ 75 (491)
.++.+|..+++++++...|.+ ++...++.|+|+|||+++|.+||++|++|||++| .||||++++.. .+..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~Gk~~F~~LrD~~G--~IQvv~~~~~~~~~~~~~~~ 155 (659)
T PTZ00385 78 AAYSSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIGKIIFVTIRSNGN--ELQVVGQVGEHFTREDLKKL 155 (659)
T ss_pred CccccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccCCeEEEEEEECCc--eEEEEEECCccCCHHHHHHH
Confidence 367899999999999888753 2223356799999999999999999999999996 59999987542 24443
Q ss_pred -hhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCC-CCCC-C--ccc---cChhhhccCccccCC-ChHHHH
Q 011197 76 -KSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDP-SYPI-Q--KKR---VSREFLRTKAHLRPR-TNTFGA 146 (491)
Q Consensus 76 -~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~-~~P~-~--~~~---~~~~~~r~~~~l~~R-~~~~~~ 146 (491)
+. |+.||+|.|+|++.++++ +++||+|++++|||++.. ..|+ + .+. .+.+...++||||+| ++.+++
T Consensus 156 ~~~--l~~gdiV~V~G~v~~t~~--GeleI~~~~i~lLska~~~~~~~~p~~~k~~~~~d~e~R~r~RyLDL~~n~~~~~ 231 (659)
T PTZ00385 156 KVS--LRVGDIIGADGVPCRMQR--GELSVAASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMTNPCVIE 231 (659)
T ss_pred HhC--CCCCCEEEEEEEEEecCC--ceEEEEeeEEEEechhhhccccCCCCCccccccCChhhhcccceeeeecCHHHHH
Confidence 35 999999999999999875 489999999999999642 2221 2 122 245666699999996 778999
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (491)
+|++||+|++++|+||.++||+||+||+|+++++++++++|. +++ ++++.++
T Consensus 232 ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~-t~~---------------------------n~~~~~~ 283 (659)
T PTZ00385 232 TIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFV-THH---------------------------NANAMDL 283 (659)
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceE-eec---------------------------ccCCCCE
Confidence 999999999999999999999999999999999999999995 443 4568899
Q ss_pred ccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011197 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305 (491)
Q Consensus 227 ~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~ 305 (491)
||+|||||||| |+++|++||||||||||||+++ .||||||||||||++|+||+|+|+++|+||++ ++..+.+..
T Consensus 284 yL~~SPELylKrLivgG~erVyeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d~~d~m~l~E~li~~----~~~~v~g~~ 358 (659)
T PTZ00385 284 FLRVAPELHLKQCIVGGMERIYEIGKVFRNEDAD-RSHNPEFTSCEFYAAYHTYEDLMPMTEDIFRQ----LAMRVNGTT 358 (659)
T ss_pred EecCChHHHHHHHhhcccCCEEEEeceecCCCCC-CCccccccceeeeeecCCHHHHHHHHHHHHHH----HHHHhcCCe
Confidence 99999999995 8889999999999999999995 89999999999999999999999999999999 888876532
Q ss_pred cc------------cccccchhhcchhhhhhhhhhcCCCcc---c-cHHHH---HHHHHHhccccccccccccccchHHh
Q 011197 306 KE------------DMDFFNTWIEKGIIDRLSTVAERDFVQ---L-SYTDA---IELLIKAKKKFEFLVKWGCDLQSEHE 366 (491)
Q Consensus 306 ~~------------~l~~~~~~~~~~~~~~l~~~~~~~~~~---i-t~~ea---~~~l~~~~~~~~~~~~~g~~l~~~~e 366 (491)
.- ++++..+|.+.++.+.+.+++|.++.. + +.+++ ..++++.|++++.....|..++..++
T Consensus 359 ~~~~~~~~~~g~~~~i~~~~Pf~Rit~~d~~~e~~G~d~~~~~dl~~~~e~~~~~~~~~~~gi~~~~~~~~g~~~~~lfe 438 (659)
T PTZ00385 359 VVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRMSGVEFPPPNELNTPKGIAYMSVVMLRYNIPLPPVRTAAKMFEKLID 438 (659)
T ss_pred eEEeeccccCCCcccccCCCCceEEeHHHHHHHHhCCCCCccccCCCHHHHHHHHHHHHHcCCCCCcccchhHHHHHHHH
Confidence 11 233334555666666666666655532 2 22222 23444555544433334556666777
Q ss_pred hhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHH-----HcCCCccc
Q 011197 367 RYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD-----ELKLNRDS 441 (491)
Q Consensus 367 ~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~-----~~g~~~~~ 441 (491)
.++.+.+ . +|+||+|||.+++||++...+++.+++|||||++|+ ||+||++|++|+.+|++++. +.+.+++.
T Consensus 439 ~~ve~~l-~-qPtFI~dyP~e~sPLak~~~~dp~~teRFELfi~G~-EiaNGysELnDp~eQr~Rfe~q~~~k~~gd~ea 515 (659)
T PTZ00385 439 FFITDRV-V-EPTFVMDHPLFMSPLAKEQVSRPGLAERFELFVNGI-EYCNAYSELNDPHEQYHRFQQQLVDRQGGDEEA 515 (659)
T ss_pred HHHHHhh-C-CcEEEeCCccccCcccccCCCCCCeEEEEEEEeCCe-EeeecccccCCHHHHHHHHHHHHHHHhcCCchh
Confidence 7776654 3 899999999999999986666778999999999997 99999999999999999993 34555555
Q ss_pred H---HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 442 Y---WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 442 ~---~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
+ +|||+|++||||||||||||||||+|++||.+|||||++||....
T Consensus 516 ~~~DedfL~AleyGmPPtgG~GIGIDRLvMlltg~~sIReVilFP~mr~ 564 (659)
T PTZ00385 516 MPLDETFLKSLQVGLPPTAGWGMGIDRALMLLTNSSNIRDGIIFPLLRQ 564 (659)
T ss_pred hccHHHHHHHHHcCCCCCCceEEcHHHHHHHHcCCcchhheecCccccc
Confidence 5 889999999999999999999999999999999999999998764
|
|
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-92 Score=722.03 Aligned_cols=438 Identities=21% Similarity=0.320 Sum_probs=380.6
Q ss_pred CCcccceeeccccCCccc----CCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhh-hhh
Q 011197 6 GEFRKKLKIVDVKGGPNE----GLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ-VKS 77 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~----~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~-~~~ 77 (491)
..|.+++++.++...|.+ ........|+++|||.++|.+||++|++|.|++| +||++++++. ..|+. .+.
T Consensus 34 ~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~GK~~F~~i~d~~g--kiQ~yi~k~~~~~~~~~~~~~~ 111 (502)
T COG1190 34 NDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMGKASFADLQDGSG--KIQLYVNKDEVGEEVFEALFKK 111 (502)
T ss_pred CcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccCceeEEEEecCCc--eEEEEEeccccchhhHHHHHhc
Confidence 567888899999887753 1122233599999999999999999999999996 5999999874 34554 445
Q ss_pred cCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccChhh--hc-cCccccCCC-hHHHHHHHHHHH
Q 011197 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREF--LR-TKAHLRPRT-NTFGAVARVRNA 153 (491)
Q Consensus 78 ~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~--~r-~~~~l~~R~-~~~~~~~~~Rs~ 153 (491)
++.||+|+|+|.+.+|+++ +++|.|+++++|+||+ .|+|+|.+++.. .| +.||+|+-. +..+..|..||+
T Consensus 112 --~dlGDiigv~G~~~~T~~G--elSv~v~~~~lLsKsL--~pLPeK~hgL~D~E~RyR~RylDLi~N~e~r~~f~~Rs~ 185 (502)
T COG1190 112 --LDLGDIIGVEGPLFKTKTG--ELSVSVEELRLLSKSL--RPLPEKFHGLTDKEIRYRQRYLDLIVNPESRQTFIKRSK 185 (502)
T ss_pred --cccCCEEeeeeeeeecCCC--ceEEEEEEEeeecccC--CCCChhhcCCccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999999999999999876 8999999999999998 677788776632 33 789999876 478999999999
Q ss_pred HHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchh
Q 011197 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (491)
Q Consensus 154 i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spq 233 (491)
|+++||+||.++||+||+||+|+..+++++|.|| +|++|. ++.++||++|||
T Consensus 186 ii~~iR~fl~~~gFlEVETP~lq~i~GGA~ArPF-~ThhNa---------------------------ld~dlyLRIApE 237 (502)
T COG1190 186 IIRAIREFLDDRGFLEVETPMLQPIPGGAAARPF-ITHHNA---------------------------LDMDLYLRIAPE 237 (502)
T ss_pred HHHHHHHHHHHCCCeEeccccccccCCCcccccc-eeeecc---------------------------cCCceEEeeccH
Confidence 9999999999999999999999999999999999 577753 478899999999
Q ss_pred hHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC-----cc
Q 011197 234 LNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC-----KE 307 (491)
Q Consensus 234 l~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~-----~~ 307 (491)
||| +|+++|++||||||++||||+. +.||||||||||+|+||+||+|+|+++|+||+. +++.+.+.. ..
T Consensus 238 LyLKRliVGG~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYaDy~D~m~ltE~Li~~----~a~~v~gt~~v~y~~~ 312 (502)
T COG1190 238 LYLKRLIVGGFERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYADYEDLMDLTEELIKE----LAKEVNGTTKVTYGGQ 312 (502)
T ss_pred HHHHHHHhcCchhheeeccccccCCC-ccccCcchhhHHHHHHHhHHHHHHHHHHHHHHH----HHHHhcCCeEEEECCE
Confidence 999 7999999999999999999999 689999999999999999999999999999999 999998643 35
Q ss_pred cccccchhhcchhhhhhhhhhcCC-CccccHHHHHHHHHHhccccccccc--cccccchHHhhhhccccccCccEEEEeC
Q 011197 308 DMDFFNTWIEKGIIDRLSTVAERD-FVQLSYTDAIELLIKAKKKFEFLVK--WGCDLQSEHERYLTEEAFGGCPVIVSDY 384 (491)
Q Consensus 308 ~l~~~~~~~~~~~~~~l~~~~~~~-~~~it~~ea~~~l~~~~~~~~~~~~--~g~~l~~~~e~~l~~~~~~~~p~~i~~~ 384 (491)
.+++.++|.+..|.+.++++++.. +...+.++|.+++++++++...... +|.-++..+|..+.++.. +|+||+||
T Consensus 313 ~id~~~pf~ri~m~dal~e~~g~~~~~~~~~e~~~~~ak~~~i~~~~~~~~~~g~ll~~lFe~~vE~~li--qPTFv~d~ 390 (502)
T COG1190 313 EIDFSKPFKRITMVDALKEYLGVDFDDLFDDEEAKELAKKHGIEVEKYGTWGLGHLLNELFEELVEAKLI--QPTFVTDH 390 (502)
T ss_pred eEecCCCeeeeehHHHHHHHhCccccccCCHHHHHHHHHHhCCCcCccccccHHHHHHHHHHHHhhhhhc--CCceeecC
Confidence 688888999999999999999984 5667889999999999876543322 456777888887666554 79999999
Q ss_pred CCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH------cCCCccc-H-HHHHHHHhcCCCCc
Q 011197 385 PKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDS-Y-WWYLDLRHYGSVPH 456 (491)
Q Consensus 385 P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~------~g~~~~~-~-~~yl~~~~~G~pp~ 456 (491)
|.+++||+++.++++++++|||||++|. |||||+.+.+|+..|.+||.+ .|.+++. + +.|++|++|||||+
T Consensus 391 P~eiSPLak~~~~~p~~teRFElfi~g~-EiaNaysELNDP~dQ~~RF~~Q~~~k~~Gddea~~~Dedfv~ALeyGmPPT 469 (502)
T COG1190 391 PVEISPLAKRHRSNPGLTERFELFIGGK-EIANAYSELNDPVDQRERFEAQVEEKEAGDDEAMELDEDFVEALEYGMPPT 469 (502)
T ss_pred ccccCccccCCCCCcchhhhheeeeccE-EeeeccchhcCHHHHHHHHHHHHHHHHcCCccccccCHHHHHHHhcCCCCC
Confidence 9999999998888889999999999997 999999999999999999865 3555443 2 77999999999999
Q ss_pred cceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 457 AGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 457 ~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
||+|||||||+|+|||+.|||||++||-...
T Consensus 470 gG~GiGIDRLvMllT~~~sIRdVilFP~mr~ 500 (502)
T COG1190 470 GGLGIGIDRLVMLLTNSPSIRDVILFPAMRP 500 (502)
T ss_pred CCccccHHHHHHHHcCCCchhheecccccCC
Confidence 9999999999999999999999999997653
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=726.37 Aligned_cols=428 Identities=23% Similarity=0.345 Sum_probs=334.8
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
++++|.++... +.|++|+|+|||+++|.+|+++|++|||++| .||||++++...++.++. |+.||+|.|+
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~Gkl~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~--L~~esvV~V~ 71 (583)
T TIGR00459 2 RTHYCGQLRTE------HLGQTVTLAGWVNRRRDLGGLIFIDLRDRSG--IVQVVCDPDADALKLAKG--LRNEDVVQVK 71 (583)
T ss_pred CceeHhhcchh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCc--cEEEEEeCCHHHHHHHhc--CCCCCEEEEE
Confidence 57889999764 6899999999999999999999999999997 499999876545666777 9999999999
Q ss_pred EEEEecC-------CCceeEEEEEeeEEEEccCCCCCCCCcc-ccChhhhc-cCccccCCChHHHHHHHHHHHHHHHHHH
Q 011197 90 GNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHK 160 (491)
Q Consensus 90 G~v~~~~-------~~~~~~el~~~~i~ils~~~~~~P~~~~-~~~~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (491)
|+|.+++ ..++++||.+++++|||+|. .+|++.. ....+.+| ++||||+|++.++++|++||++++++|+
T Consensus 72 G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~~P~~~~~~~~~~~~Rl~~RyLDLR~~~~~~~lr~Rs~i~~~iR~ 150 (583)
T TIGR00459 72 GKVSARPEGNINRNLDTGEIEILAESITLLNKSK-TPPLIIEKTDAEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRN 150 (583)
T ss_pred EEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCCcccccccchhhhcccceEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999764 34578999999999999996 4777653 33445555 8999999999999999999999999999
Q ss_pred HHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccc-ccccchhhHHH-H
Q 011197 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLNAE-T 238 (491)
Q Consensus 161 ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~L~~Spql~lq-l 238 (491)
||.++||+||+||+|+++++||+++ |.+.. .+++..+ +|+||||+||| |
T Consensus 151 ff~~~gFiEVeTP~L~~s~~eGar~-f~vp~----------------------------~~~~~~~y~L~qSpQlykq~l 201 (583)
T TIGR00459 151 FLDQQGFLEIETPMLTKSTPEGARD-YLVPS----------------------------RVHKGEFYALPQSPQLFKQLL 201 (583)
T ss_pred HHHHCCCEEEECCeeccCCCCCCcc-eeeee----------------------------ecCCCceeecCCCHHHHHHHH
Confidence 9999999999999999999999876 43321 1112223 49999999997 7
Q ss_pred HhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcc
Q 011197 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEK 318 (491)
Q Consensus 239 ~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 318 (491)
|++|++||||||||||||+++++|| |||||||||++|+|++|+|+++|+||++ +++.+.+. ++..+|.+.
T Consensus 202 ~v~G~ervfqI~~~FR~E~~~t~r~-pEFT~le~E~af~d~~dvm~~~E~li~~----v~~~v~~~-----~~~~pf~r~ 271 (583)
T TIGR00459 202 MVSGVDRYYQIARCFRDEDLRADRQ-PEFTQIDMEMSFMTQEDVMELIEKLVSH----VFLEVKGI-----DLKKPFPVM 271 (583)
T ss_pred HhcccCcEEEEcceeeCCCCCCCCC-cccCcceeeecCCCHHHHHHHHHHHHHH----HHHHHhCC-----CCCCCceEE
Confidence 8899999999999999999988877 9999999999999999999999999999 88877542 222333333
Q ss_pred hhhhhhhhhhcC---------------------------------------------CCccccHHHHHHHHHHhccc---
Q 011197 319 GIIDRLSTVAER---------------------------------------------DFVQLSYTDAIELLIKAKKK--- 350 (491)
Q Consensus 319 ~~~~~l~~~~~~---------------------------------------------~~~~it~~ea~~~l~~~~~~--- 350 (491)
++.+++.++-+. ++.+-..++..++.++.|.+
T Consensus 272 ty~ea~~~yGsDkPDlR~~~~~~d~~~~~~~~~f~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~ 351 (583)
T TIGR00459 272 TYAEAMERYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNLINDGGRVKAIRVPGGWAELSRKSIKELRKFAKEYGAKGLA 351 (583)
T ss_pred EHHHHHHHHCCCCCccccCcccccHHHhhccCCcchhhhhhccCCeEEEEEecCCcCccCHhHHHHHHHHHHHcCCCcce
Confidence 444443332110 11122233333444443322
Q ss_pred ---cccccccc---cccch-------------------------------------HH-h-hhhccccccCccEEEEeCC
Q 011197 351 ---FEFLVKWG---CDLQS-------------------------------------EH-E-RYLTEEAFGGCPVIVSDYP 385 (491)
Q Consensus 351 ---~~~~~~~g---~~l~~-------------------------------------~~-e-~~l~~~~~~~~p~~i~~~P 385 (491)
++..-..+ .-+.. .. + .-+++.-. -+|+||+|||
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~lG~lr~~l~~~~~l~~~~~-~~~~wV~dfP 430 (583)
T TIGR00459 352 YLKVNEDGINSPIKKFLDEKKGKILLERTDAQNGDILLFGAGSKKIVLDALGALRLKLGKDLGLVDPDL-FSFLWVVDFP 430 (583)
T ss_pred EEEEcCCcCCCchhhhcCHHHHHHHHHHhCCCCCCEEEEecCcchhHHHHHHHHHHHHHHHcCCcCCCC-ceEEEEEeCC
Confidence 11100000 00000 00 0 00222111 2799999999
Q ss_pred CC-----------CcccccccCCCCC---------ceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCccc----
Q 011197 386 KE-----------IKAFYMRQNDDGR---------TVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS---- 441 (491)
Q Consensus 386 ~~-----------~~pf~~~~~~~~~---------~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~---- 441 (491)
.. ++||+++..+|.. .+++|||++||+ ||+|||.|+||++.|+++|+..|+++++
T Consensus 431 lfe~~~~~~~~a~hhPfT~p~~~d~~~l~~~p~~~~~~~yDLvlnG~-ElggGs~rihd~~~Q~~~f~~l~~~~ee~~~~ 509 (583)
T TIGR00459 431 MFEKDKEGRLCAAHHPFTMPKDEDLENLEAAPEEALAEAYDLVLNGV-ELGGGSIRIHDPEVQKKVFEILGIDPEEAREK 509 (583)
T ss_pred CccccCCCceeeeECCCCCCCCCChhhhhcChhhhhhheeeEEEece-EecceeEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence 97 9999998665544 689999999998 9999999999999999999999987664
Q ss_pred HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 442 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 442 ~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
+++||+|++||+|||||+|||||||+|+|||.+||||||+||++.+..
T Consensus 510 f~~ll~Al~yG~PPhgG~alG~DRlvmlLt~~~sIRDVIaFPKt~~g~ 557 (583)
T TIGR00459 510 FGFLLEAFKYGTPPHAGFALGLDRLMMLLTGTDNIRDVIAFPKTTAAA 557 (583)
T ss_pred HHHHHHHHhcCCCCcCceeccHHHHHHHHcCCCchhheeecCCCCCCc
Confidence 799999999999999999999999999999999999999999998754
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-87 Score=690.36 Aligned_cols=411 Identities=24% Similarity=0.405 Sum_probs=335.1
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCC-c-cchhhhhhcCCCCCcEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD-A-EGYDQVKSGLITTGASIW 87 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~-~-~~~~~~~~~~L~~gd~V~ 87 (491)
+++.|.+|... ++|++|+++|||++.|++|+++||||||.+|. +|||++++ . +.|+.+.. |+.|++|.
T Consensus 2 Rt~~cg~l~~~------~vG~~V~L~GWV~r~Rd~GgliFiDLRDr~Gi--vQvv~~~~~~~~~~~~a~~--lr~E~vi~ 71 (585)
T COG0173 2 RTHYCGELRES------HVGQTVTLSGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPEDSPEAFEVASR--LRNEFVIQ 71 (585)
T ss_pred CceeccccCHH------HCCCEEEEEeeeeeccccCCeEEEEcccCCCe--EEEEECCccCHHHHHHHHh--cCceEEEE
Confidence 57999999875 89999999999999999999999999999986 99999984 2 35777777 99999999
Q ss_pred EEEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCccc--cChhhhc-cCccccCCChHHHHHHHHHHHHHHH
Q 011197 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR--VSREFLR-TKAHLRPRTNTFGAVARVRNALAYA 157 (491)
Q Consensus 88 V~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~~--~~~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~~ 157 (491)
|+|+|.+++. .+|++||++++++|||+|.+ +|++..+ ...+.+| +|||||||++.++..+++|++++.+
T Consensus 72 V~G~V~~R~e~~~N~~l~TGeiEv~a~~i~vln~s~~-lPf~i~d~~~~~Ee~RLkYRyLDLRR~~m~~~l~lR~kv~~~ 150 (585)
T COG0173 72 VTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKT-LPFQIEDETNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKA 150 (585)
T ss_pred EEEEEEecCccccCCCCCcceEEEEeeeEEEEecCCC-CCcCCCCCCCcchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence 9999998865 35799999999999999975 5655432 3444455 9999999999999999999999999
Q ss_pred HHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH
Q 011197 158 THKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE 237 (491)
Q Consensus 158 iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq 237 (491)
+|+||.++||+||+||+|+.|++||+.+....++.+ + ++||. |.||||+|||
T Consensus 151 iR~~ld~~gF~EiETPiLtkSTPEGARDfLVPSRv~------------------~------G~FYA----LPQSPQlfKQ 202 (585)
T COG0173 151 IRNFLDDQGFLEIETPILTKSTPEGARDFLVPSRVH------------------P------GKFYA----LPQSPQLFKQ 202 (585)
T ss_pred HHHHHhhcCCeEeecCccccCCCccccccccccccC------------------C------Cceee----cCCCHHHHHH
Confidence 999999999999999999999999999987544433 2 37886 6699999999
Q ss_pred -HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhh
Q 011197 238 -TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWI 316 (491)
Q Consensus 238 -l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~ 316 (491)
||++|++|+|||++|||+|+.+.+|+ |||||||+||+|.+-+|+|+++|+|+++ +++.+.+.
T Consensus 203 LLMvsGfdRYyQIarCFRDEDlRaDRQ-PEFTQiD~EmSF~~~edv~~~~E~l~~~----vf~~~~~i------------ 265 (585)
T COG0173 203 LLMVAGFDRYYQIARCFRDEDLRADRQ-PEFTQIDLEMSFVDEEDVMELIEKLLRY----VFKEVKGI------------ 265 (585)
T ss_pred HHHHhcccceeeeeeeecccccccccC-CcceeEeEEeecCCHHHHHHHHHHHHHH----HHHHhcCC------------
Confidence 78999999999999999999999999 9999999999999999999999999999 88876432
Q ss_pred cchhhhhhhhhhcCCCccccHHHHHHHHH---------------------------------------------------
Q 011197 317 EKGIIDRLSTVAERDFVQLSYTDAIELLI--------------------------------------------------- 345 (491)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~it~~ea~~~l~--------------------------------------------------- 345 (491)
.+..||+||||+||++.+-
T Consensus 266 ----------~l~~pFprmtY~eAm~~YGSDKPDlRf~lel~dvt~~~~~~~F~vF~~~~~~~~~v~ai~vp~~~~~sRk 335 (585)
T COG0173 266 ----------ELKTPFPRMTYAEAMRRYGSDKPDLRFPLELIDVTDLFKDSEFKVFSNALANGGRVKAIVVPGGASLSRK 335 (585)
T ss_pred ----------ccCCCcccccHHHHHHHhCCCCCcccCCceehhHHHHhcCCCcceehhhhhcCCeEEEEEcCCccccCHH
Confidence 1233566666666654221
Q ss_pred ----------Hhccc-cccccccc-cccchHHhhhh--------------------------------------------
Q 011197 346 ----------KAKKK-FEFLVKWG-CDLQSEHERYL-------------------------------------------- 369 (491)
Q Consensus 346 ----------~~~~~-~~~~~~~g-~~l~~~~e~~l-------------------------------------------- 369 (491)
..|.+ +.. +.+. ..+...+.+++
T Consensus 336 ~id~~~~~ak~~gakGLa~-ikv~~~~~~gpi~kfl~e~~~~~l~~~~~~~~gD~iff~A~~~~~~~~~lGalR~~l~~~ 414 (585)
T COG0173 336 QIDELTEFAKIYGAKGLAY-IKVEEDGLKGPIAKFLSEEILEELIERLGAEDGDIIFFVADKKKVVNKALGALRLKLGKE 414 (585)
T ss_pred HHHHHHHHHHHcCCCceEE-EEEecCCccchHHHhcCHHHHHHHHHHhCCCCCCEEEEecCcHHHHHHHHHHHHHHHHHH
Confidence 11000 000 0000 00111111111
Q ss_pred ---ccccccCccEEEEeCCCC------------CcccccccCCCC---------CceEEEEEEeCCeeEeechhhhcccH
Q 011197 370 ---TEEAFGGCPVIVSDYPKE------------IKAFYMRQNDDG---------RTVAAMDMLVPRIGELIGGSQREERL 425 (491)
Q Consensus 370 ---~~~~~~~~p~~i~~~P~~------------~~pf~~~~~~~~---------~~~~~fdl~~~G~gEi~~G~~r~~~~ 425 (491)
.++- ...++||+|||.. ++||+|+...+. -.+..|||++||+ ||+|||.|+|++
T Consensus 415 l~li~~~-~~~f~WVvDFPlfE~~ee~~~~~a~HHPFT~P~~~~~~~l~~~p~~~~a~aYDlVlNG~-ElggGSiRIh~~ 492 (585)
T COG0173 415 LGLIDKD-QFKFLWVVDFPLFEWDEEEGRYVAAHHPFTMPKPEDLELLEADPESVRARAYDLVLNGY-ELGGGSIRIHDP 492 (585)
T ss_pred hCCCCcc-cceEEEEEecCccCCccccCceecccCCCCCCCccchhhhhcCHHHhhhhhccEEeccE-eeccceeeeCCH
Confidence 1100 1269999999993 899999865421 1467899999999 999999999999
Q ss_pred HHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 426 EYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 426 ~~~~~~~~~~g~~~~----~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
+.|.+.|+..|++++ .|..+|+|++||.|||||+|+|||||+|+|+|.+||||||+||++.+..
T Consensus 493 eiQ~~vF~~lg~~~eea~ekFGFll~Af~yGaPPHgGiA~GlDRlvmll~g~~sIReVIAFPKt~~a~ 560 (585)
T COG0173 493 EIQEKVFEILGISPEEAEEKFGFLLEAFKYGAPPHGGIAFGLDRLVMLLTGAESIRDVIAFPKTQQAA 560 (585)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCCchhheeecCCCcccc
Confidence 999999999999987 4789999999999999999999999999999999999999999987653
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-87 Score=762.23 Aligned_cols=423 Identities=18% Similarity=0.236 Sum_probs=341.7
Q ss_pred CcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhh-hhcCCCC
Q 011197 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQV-KSGLITT 82 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~-~~~~L~~ 82 (491)
+|.++++|+++... ..|++|+|+|||+++|.+||++|++|||++| +||||++++.. .++.+ +. |+.
T Consensus 635 ~~~~~~~~~~~~~~------~~~~~V~v~Grv~~~R~~G~~~F~~lrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~ 704 (1094)
T PRK02983 635 GVPPTHTVAEALDA------PTGEEVSVSGRVLRIRDYGGVLFADLRDWSG--ELQVLLDASRLEQGSLADFRAA--VDL 704 (1094)
T ss_pred CCcCccCHHHHHHh------cCCCEEEEEEEEEEEeeCCCeEEEEEEeCCe--eEEEEEECCccchhhHHHHHhc--CCC
Confidence 57788999998764 6788999999999999999999999999996 59999987642 23333 34 999
Q ss_pred CcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHHHHHHH
Q 011197 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNALAYAT 158 (491)
Q Consensus 83 gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~i~~~i 158 (491)
||+|.|+|++.+++++ ++||.+++++|+++|. .|+|++.++ .+...++||||+| ++.++++|++||+|++++
T Consensus 705 gd~V~v~G~v~~t~~g--e~ei~~~~i~ll~k~~--~plP~k~~~~~d~e~R~r~R~lDL~~n~~~~~~~r~Rs~i~~~i 780 (1094)
T PRK02983 705 GDLVEVTGTMGTSRNG--TLSLLVTSWRLAGKCL--RPLPDKWKGLTDPEARVRQRYLDLAVNPEARDLLRARSAVVRAV 780 (1094)
T ss_pred CCEEEEEEEEEEcCCC--CEEEEEeEEEEEeccC--cCCCCccccCCChhhcchhhhhhhhcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999875 8999999999999997 455554433 3333489999996 689999999999999999
Q ss_pred HHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-
Q 011197 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE- 237 (491)
Q Consensus 159 R~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq- 237 (491)
|+||.++||+||+||+|+++.|++++++|.+ ++ +||+.++||+||||||||
T Consensus 781 R~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t-~~---------------------------~~~~~~~yLriSPELylKr 832 (1094)
T PRK02983 781 RETLVARGFLEVETPILQQVHGGANARPFVT-HI---------------------------NAYDMDLYLRIAPELYLKR 832 (1094)
T ss_pred HHHHHHCCCEEEeCCEeeccCCCcccceeEe-ee---------------------------cCCCccchhhcChHHHHHH
Confidence 9999999999999999999999888899963 32 578999999999999995
Q ss_pred HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhc
Q 011197 238 TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIE 317 (491)
Q Consensus 238 l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~ 317 (491)
|+++|++||||||||||||+++ .||||||||||+|++|.||+|+|+++|+||++ +++.+.+... +.+.+...
T Consensus 833 LivgG~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~dy~d~m~l~E~li~~----i~~~v~~~~~--~~~~~~~~- 904 (1094)
T PRK02983 833 LCVGGVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHADYDTMRDLTRELIQN----AAQAAHGAPV--VMRPDGDG- 904 (1094)
T ss_pred HHhcccCceEEEcceecCCCCC-CCccccccchhhhhhcCCHHHHHHHHHHHHHH----HHHHHhCCcE--EeeCCccc-
Confidence 8889999999999999999995 69999999999999999999999999999999 9888865432 11100000
Q ss_pred chhhhhhhhhhcCCCccccHHHHHHH------------------HHHhccccccccccccccchHHhhhhccccccCccE
Q 011197 318 KGIIDRLSTVAERDFVQLSYTDAIEL------------------LIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPV 379 (491)
Q Consensus 318 ~~~~~~l~~~~~~~~~~it~~ea~~~------------------l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~ 379 (491)
....-.++.||+++||.||++. +++.+++......+|..++..++.+ +++.+. +|+
T Consensus 905 ----~~~~i~~~~pf~rit~~eai~~~~g~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~l~~~l~~~~-ve~~~~-~P~ 978 (1094)
T PRK02983 905 ----VLEPVDISGPWPVVTVHDAVSEALGEEIDPDTPLAELRKLCDAAGIPYRTDWDAGAVVLELYEHL-VEDRTT-FPT 978 (1094)
T ss_pred ----cccccccCCCceEEEHHHHHHHHhCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHhHHHHHHHHHH-HHhhcC-CCE
Confidence 0000013456777777777652 2333333221111222233334444 444555 899
Q ss_pred EEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-----cCCCcccH---HHHHHHHhc
Q 011197 380 IVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-----LKLNRDSY---WWYLDLRHY 451 (491)
Q Consensus 380 ~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-----~g~~~~~~---~~yl~~~~~ 451 (491)
||+|||.+++||||+.++++.+++|||||++|+ ||+||+++++|+.+|++++.+ .+.+++.+ +|||+|++|
T Consensus 979 Fv~dyP~~~spla~~~~~~p~~~erFdL~i~G~-Ei~ng~~El~Dp~eq~~r~~~q~~~~~~~d~e~~~~De~yl~al~y 1057 (1094)
T PRK02983 979 FYTDFPTSVSPLTRPHRSDPGLAERWDLVAWGV-ELGTAYSELTDPVEQRRRLTEQSLLAAGGDPEAMELDEDFLQALEY 1057 (1094)
T ss_pred EEECCCcccccccccCCCCCCeeEEEEEEECCE-EEeccccccCCHHHHHHHHHHHHHHHhCCChhhccccHHHHHHHHc
Confidence 999999999999997777788999999999998 999999999999999777754 45566655 699999999
Q ss_pred CCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 452 GSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 452 G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||||||||||||||+|++||. |||||++||+...
T Consensus 1058 GmPP~gG~GiGiDRLvM~ltg~-sIRdvi~FP~~k~ 1092 (1094)
T PRK02983 1058 AMPPTGGLGMGVDRLVMLLTGR-SIRETLPFPLVKP 1092 (1094)
T ss_pred CCCCCCeEEeeHHHHHHHHhCC-ChheEecCCcCCC
Confidence 9999999999999999999996 9999999999764
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-85 Score=703.17 Aligned_cols=432 Identities=22% Similarity=0.320 Sum_probs=325.0
Q ss_pred cccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc--cchhhhhhcCCCCCcE
Q 011197 8 FRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA--EGYDQVKSGLITTGAS 85 (491)
Q Consensus 8 ~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~--~~~~~~~~~~L~~gd~ 85 (491)
..++++|.+|... +.|++|+|+|||+++|++|+++|++|||++|. +|||++++. ..++.++. |+.||+
T Consensus 57 ~~rt~~cg~l~~~------~~gk~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~--L~~esv 126 (652)
T PLN02903 57 PSRSHLCGALSVN------DVGSRVTLCGWVDLHRDMGGLTFLDVRDHTGI--VQVVTLPDEFPEAHRTANR--LRNEYV 126 (652)
T ss_pred ccCCCchhhcchh------hCCCEEEEEEEEEEEecCCCcEEEEEEcCCcc--EEEEEeCCccHHHHHHHhc--CCCCCE
Confidence 3467899999874 79999999999999999999999999999975 999998653 23455667 999999
Q ss_pred EEEEEEEEecC-------CCceeEEEEEeeEEEEccCCCCCCCCcc-------ccChhhhccCccccCCChHHHHHHHHH
Q 011197 86 IWIQGNVVPSQ-------GSKQKVELKVNKIVLVGKSDPSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVR 151 (491)
Q Consensus 86 V~V~G~v~~~~-------~~~~~~el~~~~i~ils~~~~~~P~~~~-------~~~~~~~r~~~~l~~R~~~~~~~~~~R 151 (491)
|.|+|+|.+++ ..+|++||.+++++|||+|..++|++.. ..+.+..+++||||+|++.++++|++|
T Consensus 127 V~V~G~V~~r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~~~~~~~ee~Rl~~RyLDLR~~~~q~~lr~R 206 (652)
T PLN02903 127 VAVEGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADEQKDSIKEEVRLRYRVLDLRRPQMNANLRLR 206 (652)
T ss_pred EEEEEEEEeCCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCccccccccccccCChhhhhccceeecCCHHHHHHHHHH
Confidence 99999999763 1246899999999999999655665432 245666679999999999999999999
Q ss_pred HHHHHHHHHHHhh-CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccccccc
Q 011197 152 NALAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (491)
Q Consensus 152 s~i~~~iR~ff~~-~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~ 230 (491)
|++++++|+||.+ +||+||+||+|+++++||+++.|.+.... .+..+||+|
T Consensus 207 s~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~----------------------------~g~~y~L~q 258 (652)
T PLN02903 207 HRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQ----------------------------PGTFYALPQ 258 (652)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecC----------------------------CCcccccCC
Confidence 9999999999997 99999999999999999998876442211 134447999
Q ss_pred chhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 011197 231 SGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDM 309 (491)
Q Consensus 231 Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l 309 (491)
|||+||| +|++|++||||||||||||+++++|| |||||||||++|+|++|+|+++|+||++ +++.+.+..
T Consensus 259 SPQlykQ~Lm~~G~~RvFqIa~~FR~E~~~t~Rh-pEFTqLE~E~sf~d~~dvm~~~E~li~~----v~~~~~~~~---- 329 (652)
T PLN02903 259 SPQLFKQMLMVSGFDRYYQIARCFRDEDLRADRQ-PEFTQLDMELAFTPLEDMLKLNEDLIRQ----VFKEIKGVQ---- 329 (652)
T ss_pred CHHHHHHHHHhccCCcEEEEehhhccCCCCCCcc-cceeeeeeeecCCCHHHHHHHHHHHHHH----HHHHHhCCC----
Confidence 9999998 68899999999999999999988888 9999999999999999999999999999 877665421
Q ss_pred cccchhhcchhhhhhhhhhc--------------------------------------------CCCccccHH---HHHH
Q 011197 310 DFFNTWIEKGIIDRLSTVAE--------------------------------------------RDFVQLSYT---DAIE 342 (491)
Q Consensus 310 ~~~~~~~~~~~~~~l~~~~~--------------------------------------------~~~~~it~~---ea~~ 342 (491)
...+|.+.++.+++.++.. ..+.+-... +.+.
T Consensus 330 -~~~PF~rity~eA~~~ygsDKPDlRf~~~l~dv~~~~~~~~f~~f~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~ 408 (652)
T PLN02903 330 -LPNPFPRLTYAEAMSKYGSDKPDLRYGLELVDVSDVFAESSFKVFAGALESGGVVKAICVPDGKKISNNTALKKGDIYN 408 (652)
T ss_pred -CCCCceEEEHHHHHHHHcCCCCcccCCceeeEhHHhhcCCCchhhhhhhccCCeEEEEEeCCCCccchhhhcccHHHHH
Confidence 0001111111111111000 001000010 0000
Q ss_pred HHHHhc---cc---cc-c-cccc--c--cccchH-Hh--------------------------------hh------hcc
Q 011197 343 LLIKAK---KK---FE-F-LVKW--G--CDLQSE-HE--------------------------------RY------LTE 371 (491)
Q Consensus 343 ~l~~~~---~~---~~-~-~~~~--g--~~l~~~-~e--------------------------------~~------l~~ 371 (491)
...+.| .. +. . .... . .-++.+ .+ .. |.+
T Consensus 409 ~~~~~g~~gl~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~~~~~~~~GD~~~~~a~~~~~~~~~lG~lR~~l~~~l~l~~ 488 (652)
T PLN02903 409 EAIKSGAKGLAFLKVLDDGELEGIKALVESLSPEQAEQLLAACGAGPGDLILFAAGPTSSVNKTLDRLRQFIAKTLDLID 488 (652)
T ss_pred HHHHcCCCceEEEEEcCCCCccCccchhhcCCHHHHHHHHHHhCCCCCcEEEEECCcchHHHHHHHHHHHHHHHHcCCCC
Confidence 011111 00 00 0 0000 0 000000 00 00 111
Q ss_pred ccccCccEEEEeCCCC------------CcccccccCCCC-----CceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH
Q 011197 372 EAFGGCPVIVSDYPKE------------IKAFYMRQNDDG-----RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 434 (491)
Q Consensus 372 ~~~~~~p~~i~~~P~~------------~~pf~~~~~~~~-----~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~ 434 (491)
+- ...++||+|||.. ++||+++..+|- ..+..|||++||+ ||+|||+|+|+++.|++.|+.
T Consensus 489 ~~-~~~flWV~dFPlFe~~ee~~~~~a~HHPFTap~~~d~~~l~~~~a~~YDLVlNG~-EiggGS~Rih~~~~q~~~f~~ 566 (652)
T PLN02903 489 PS-RHSILWVTDFPMFEWNEDEQRLEALHHPFTAPNPEDMGDLSSARALAYDMVYNGV-EIGGGSLRIYRRDVQQKVLEA 566 (652)
T ss_pred CC-CceEEEEEeCCCCCccCCCCceEecCCCCCCCCCcchhhhhhhhhhcceeEecce-eeccceEecCCHHHHHHHHHH
Confidence 10 1269999999994 899999755432 2467899999998 999999999999999999999
Q ss_pred cCCCcc----cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 435 LKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 435 ~g~~~~----~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
.|++++ .|+|||+|++||+|||||+|+|+|||+|+|+|.+||||||+||++.+..
T Consensus 567 ~g~~~e~~~~~F~~~l~a~~yG~PphgG~alGldRlvmll~~~~~IrdviaFPKt~~g~ 625 (652)
T PLN02903 567 IGLSPEEAESKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAGAKSIRDVIAFPKTTTAQ 625 (652)
T ss_pred cCCCHHHHHHHHHHHHHHHhcCCCCCCceeecHHHHHHHHcCCCchHheEecCCCCCcc
Confidence 999876 4799999999999999999999999999999999999999999987653
|
|
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-86 Score=653.38 Aligned_cols=431 Identities=26% Similarity=0.439 Sum_probs=374.6
Q ss_pred CcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhhh-hcCCCC
Q 011197 7 EFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK-SGLITT 82 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~~-~~~L~~ 82 (491)
.=+..+.++||... ..++.|+|+|||++.|..||++|+.||++.. ++||++..+.. ...+++ .++|+.
T Consensus 66 ~~~~~~~v~dl~~~------~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~--tVQ~~~~~~~~~~isk~Mvkf~~~is~ 137 (533)
T KOG0556|consen 66 EGRELTDVSDLDES------NDGSEVLVRGRVHTSRLKGKLCFLVLRQQGS--TVQCLVAVNEDGTISKQMVKFAGSISK 137 (533)
T ss_pred cccceeehhhhhhh------cCCceEEEEEEEeeccccceEEEEEEeccCc--eEEEEEEcCCCchHHHHHHHHHhhcCc
Confidence 33455678888754 7889999999999999999999999999974 69999976543 222211 233999
Q ss_pred CcEEEEEEEEEecCC-----CceeEEEEEeeEEEEccCCCCCCCCcccc--------------------ChhhhccCccc
Q 011197 83 GASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKRV--------------------SREFLRTKAHL 137 (491)
Q Consensus 83 gd~V~V~G~v~~~~~-----~~~~~el~~~~i~ils~~~~~~P~~~~~~--------------------~~~~~r~~~~l 137 (491)
||+|.|.|+|++.+. ..+++||++.++.+||.+.+.+|++-++. ..+..++||.|
T Consensus 138 ESiV~v~g~v~k~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvl 217 (533)
T KOG0556|consen 138 ESIVDVRGVVVKVKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVL 217 (533)
T ss_pred ceEEEEEEEEecCCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceee
Confidence 999999999998754 35789999999999999999899875432 12334499999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 138 ~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
|+|+|.++++||+.+.+..++|+||..+||+||+||.|.++++||++.+|.|
T Consensus 218 DLRtptnqAiFriq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v---------------------------- 269 (533)
T KOG0556|consen 218 DLRTPTNQAIFRIQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRV---------------------------- 269 (533)
T ss_pred ecccccchheeehHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEE----------------------------
Confidence 9999999999999999999999999999999999999999999999999987
Q ss_pred cccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSC 295 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~ 295 (491)
+||+.++||+||||||+| +++++++|||+|||+||+|+++|.||+.||+-||.||+|. .|+++|+.+.+++.+
T Consensus 270 --~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdSnthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~--- 344 (533)
T KOG0556|consen 270 --SYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDSNTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVF--- 344 (533)
T ss_pred --EeccCcchhhcChHHHHHHHHhcchhheeeecceeeccccchhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHH---
Confidence 799999999999999998 6788899999999999999999999999999999999998 599999999999999
Q ss_pred HHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhc----c
Q 011197 296 MQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----E 371 (491)
Q Consensus 296 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~----~ 371 (491)
+++.+.++++.+|...++.++.+ .++ ++ .|..+++|.|++++|++.|++.. ..+||+++-|+.|. +
T Consensus 345 -IF~~l~ery~~Eie~Vr~qyp~e---~fk-f~-~~~lrl~~~e~v~mLreaGvE~g----~~dDlsTe~Ek~LG~lV~e 414 (533)
T KOG0556|consen 345 -IFKGLRERYAKEIETVRKQYPFE---PFK-FL-EPPLRLTFKEGVAMLREAGVEMG----DEDDLSTESEKKLGQLVRE 414 (533)
T ss_pred -HHHHHHHHHHHHHHHHhhcCCCc---ccc-cC-CCceEeehHHHHHHHHHcCcccC----CccccCChhHHHHHHHHHH
Confidence 99999998888887776655321 111 22 46678999999999999998633 23588888888765 4
Q ss_pred ccccCccEEEEeCCCCCcccccccCCC-CCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHh
Q 011197 372 EAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRH 450 (491)
Q Consensus 372 ~~~~~~p~~i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~ 450 (491)
++.. .+.++.+||...+|||.+.+++ +.++++||+++.| .||.+|.||.|+++.+.++++++|+++.....|+++++
T Consensus 415 ky~t-dfyildkyP~avRPFYTmpd~~~p~ySnSyD~fmRG-eEIlSGAQRIhdpe~L~era~~hGid~~~i~~YidsFr 492 (533)
T KOG0556|consen 415 KYDT-DFYILDKYPLAVRPFYTMPDPENPRYSNSYDFFMRG-EEILSGAQRIHDPELLVERAKEHGIDPSKISTYIDSFR 492 (533)
T ss_pred HhCC-cEEEEccCccccccccccCCCCCCCcccchhheech-hhhhccccccCCHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 5544 7888999999999999777754 4589999999999 59999999999999999999999999999999999999
Q ss_pred cCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 451 ~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
||+|||||+|||+||++|+++|+.|||-..+|||+|.|+.
T Consensus 493 yG~PPHaGgGIGLERvvmlyl~L~nIR~~SlFPRDPkRL~ 532 (533)
T KOG0556|consen 493 YGAPPHAGGGIGLERVVMLYLGLNNIRKTSLFPRDPKRLT 532 (533)
T ss_pred cCCCCCCCCcccHHHHHHHHhcCCcchhhccCCCCccccC
Confidence 9999999999999999999999999999999999999974
|
|
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-87 Score=671.90 Aligned_cols=438 Identities=19% Similarity=0.270 Sum_probs=373.3
Q ss_pred CCcccceeeccccCCcc---cCCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc----cchhhhhh
Q 011197 6 GEFRKKLKIVDVKGGPN---EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKS 77 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~---~~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~----~~~~~~~~ 77 (491)
.+|..++++.++...|. +++...+..|+|+|||+++|.+| |++|+||++++ .+|||+++.+. +.|.+..+
T Consensus 78 hkf~vs~si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g--~klQvm~~~~~~~~~~~F~~~~~ 155 (560)
T KOG1885|consen 78 HKFHVSISIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDG--VKLQVMANAKKITSEEDFEQLHK 155 (560)
T ss_pred chhhccccHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCC--eEEEEEEehhhcCCHHHHHHHHh
Confidence 46778899999988775 37777788899999999999986 99999999986 46999999764 35666442
Q ss_pred cCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccCh---hhhccCccccCCC-hHHHHHHHHHHH
Q 011197 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSR---EFLRTKAHLRPRT-NTFGAVARVRNA 153 (491)
Q Consensus 78 ~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~---~~~r~~~~l~~R~-~~~~~~~~~Rs~ 153 (491)
+|+.||+|+|.|.+.+|+.+ +++|.++++.+||+|+.++| .+..++ |..-++||+|+-. +..+..|++|++
T Consensus 156 -~lkrGDiig~~G~pgrt~~g--ELSi~~~~~~lLspcLh~lP--~~~~gLkD~EtRyrqRylDlilN~~~r~~f~~Rak 230 (560)
T KOG1885|consen 156 -FLKRGDIIGVSGYPGRTKSG--ELSIIPNEIILLSPCLHMLP--HEHFGLKDKETRYRKRYLDLILNPEVRDRFRIRAK 230 (560)
T ss_pred -hhhccCEEeeecCCCcCCCc--eEEEeecchheecchhccCC--hhhcCCCcHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence 49999999999999999877 89999999999999996554 333332 2222689999875 578999999999
Q ss_pred HHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchh
Q 011197 154 LAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQ 233 (491)
Q Consensus 154 i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spq 233 (491)
|++.||.||+++||+||+||+|...++++.|+|| ||++|. ++.++||+++||
T Consensus 231 II~~iRkfld~rgFlEVETPmmn~iaGGA~AkPF-IT~hnd---------------------------ldm~LylRiAPE 282 (560)
T KOG1885|consen 231 IISYIRKFLDSRGFLEVETPMMNMIAGGATAKPF-ITHHND---------------------------LDMDLYLRIAPE 282 (560)
T ss_pred HHHHHHHHhhhcCceEecchhhccccCccccCce-eecccc---------------------------cCcceeeeechH
Confidence 9999999999999999999999999999999999 677752 378899999999
Q ss_pred hHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc------
Q 011197 234 LNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK------ 306 (491)
Q Consensus 234 l~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~------ 306 (491)
||+ +|+++|++||||||+.||||++ +.+||||||.+|+|+||+||+|+|+++|+|++. ++..+.++.+
T Consensus 283 L~lK~LvVGGldrVYEIGr~FRNEGI-DlTHNPEFTTcEfY~AYady~dlm~~TE~l~s~----mv~~i~G~~~i~y~p~ 357 (560)
T KOG1885|consen 283 LYLKMLVVGGLDRVYEIGRQFRNEGI-DLTHNPEFTTCEFYMAYADYEDLMDMTEELLSG----MVKNITGSYKITYHPN 357 (560)
T ss_pred HHHHHHHhccHHHHHHHHHHhhhcCc-ccccCCCcchHHHHHHHhhHHHHHHHHHHHHHH----HHHhhcCceeEeecCC
Confidence 999 7999999999999999999999 689999999999999999999999999999999 9999877542
Q ss_pred ------ccccccchhhcchhhhhhhhhhcCCCc---cccHHHHHHHHHHh----ccccccccccccccchHHhhhhcccc
Q 011197 307 ------EDMDFFNTWIEKGIIDRLSTVAERDFV---QLSYTDAIELLIKA----KKKFEFLVKWGCDLQSEHERYLTEEA 373 (491)
Q Consensus 307 ------~~l~~~~~~~~~~~~~~l~~~~~~~~~---~it~~ea~~~l~~~----~~~~~~~~~~g~~l~~~~e~~l~~~~ 373 (491)
.++++..+|.+.+|++.|++.++.+++ .+.-.|+-++|... ++++..+-..+..|+..++.+|.+.
T Consensus 358 ~~~~~~~eldf~~pfrri~mi~~L~k~lgi~l~~~~~l~~~e~~~~L~~~~~~~~v~~p~p~t~arlLdKLvg~flE~~- 436 (560)
T KOG1885|consen 358 GPEEPELELDFTRPFRRIEMIEELEKELGIKLPPGSTLHTEETRELLKSLCVDEAVECPPPRTTARLLDKLVGEFLEPT- 436 (560)
T ss_pred CCCCCceeeeccCCeeeeeHHHHHHHHhCCCCCCccccCchhhHHHHHHHHHhcccCCCCcccHHHHHHHHHhHhhccc-
Confidence 247788899999999999999999987 46677887777654 3333333233456777788777764
Q ss_pred ccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc------CCCccc--HHHH
Q 011197 374 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWY 445 (491)
Q Consensus 374 ~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~------g~~~~~--~~~y 445 (491)
+. +|+||.|+|..|+|+++.+.+..+.++|||||++|- ||||+|.+++|+-.|+++|.++ |.|+.. .+.|
T Consensus 437 cv-nPTFi~~hP~imSPLAK~hrs~~glteRFElFi~~k-EicNAYtElNdP~~Qr~rFe~Q~~~k~~GDDEa~~~De~F 514 (560)
T KOG1885|consen 437 CV-NPTFIIDHPQIMSPLAKYHRSKAGLTERFELFIAGK-EICNAYTELNDPVDQRQRFEQQARDKDAGDDEAQMVDEDF 514 (560)
T ss_pred cC-CCeeEcCCchhcCccccccccccchhhHHHHhhhhH-HHhhhhhhhcCHHHHHHHHHHHHHHhhcCCcccccccHHH
Confidence 44 799999999999999998777778999999999996 9999999999999999888653 544332 3889
Q ss_pred HHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011197 446 LDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 446 l~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
+.|++||+||+||||||||||+|+||+..|||||++||-..
T Consensus 515 c~ALEYGlPPtgGwGmGIDRL~MllTds~~I~EVL~Fp~mk 555 (560)
T KOG1885|consen 515 CTALEYGLPPTGGWGMGIDRLVMLLTDSNNIREVLLFPAMK 555 (560)
T ss_pred HHHHHcCCCCCCccccchhhhhhhhcCCcchhheeeccccC
Confidence 99999999999999999999999999999999999999653
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-84 Score=696.45 Aligned_cols=430 Identities=24% Similarity=0.356 Sum_probs=327.7
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEE
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V 88 (491)
.++++|.++... +.|++|+|+|||+++|.+|+++|++|||++|. +|||++.....++.++. |+.||+|.|
T Consensus 3 ~r~~~~~~l~~~------~~g~~V~l~GwV~~~R~~g~l~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~--l~~es~V~V 72 (588)
T PRK00476 3 MRTHYCGELRES------HVGQTVTLCGWVHRRRDHGGLIFIDLRDREGI--VQVVFDPDAEAFEVAES--LRSEYVIQV 72 (588)
T ss_pred ccceeHHHhhHH------hCCCEEEEEEEEEEEEeCCCeEEEEEEeCCce--EEEEEeCCHHHHHHHhC--CCCCCEEEE
Confidence 367899999764 68999999999999999999999999999975 99999863334666777 999999999
Q ss_pred EEEEEecCCC-------ceeEEEEEeeEEEEccCCCCCCCCcc--ccChhhhc-cCccccCCChHHHHHHHHHHHHHHHH
Q 011197 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSDPSYPIQKK--RVSREFLR-TKAHLRPRTNTFGAVARVRNALAYAT 158 (491)
Q Consensus 89 ~G~v~~~~~~-------~~~~el~~~~i~ils~~~~~~P~~~~--~~~~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~~i 158 (491)
+|+|.+++.+ ++++||.|++++|||+|. ++|++.. ....+.+| ++||||+|++.++++|++||++++++
T Consensus 73 ~G~v~~~~~~~~n~~~~~g~~El~~~~i~il~~a~-~lP~~~~~~~~~~~~~Rl~~R~LdlR~~~~~~~l~~Rs~i~~~i 151 (588)
T PRK00476 73 TGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSK-TLPFPIDDEEDVSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAI 151 (588)
T ss_pred EEEEEecCCcccCccCCCCcEEEEEeEEEEEecCC-CCCCcccccccCChhhhhhcceEeecCHHHHHHHHHHHHHHHHH
Confidence 9999987632 568999999999999998 6776642 22334444 99999999999999999999999999
Q ss_pred HHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-
Q 011197 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE- 237 (491)
Q Consensus 159 R~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq- 237 (491)
|+||.++||+||+||+|+++++||+++ |.+... .+.+..+||+||||+|||
T Consensus 152 R~ff~~~gFiEV~TP~L~~s~~ega~~-f~v~~~---------------------------~~~~~~~~L~qSpql~kq~ 203 (588)
T PRK00476 152 RNFLDDNGFLEIETPILTKSTPEGARD-YLVPSR---------------------------VHPGKFYALPQSPQLFKQL 203 (588)
T ss_pred HHHHHHCCCEEEECCeeecCCCCCCcc-ceeccc---------------------------ccCCceeecCCCHHHHHHH
Confidence 999999999999999999999998776 644211 123444579999999997
Q ss_pred HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhc
Q 011197 238 TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIE 317 (491)
Q Consensus 238 l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~ 317 (491)
|+++|++||||||||||||+++++||+ ||||||||++|+|++|+|+++|+||++ +++.+.+.. + ..+|.+
T Consensus 204 l~~~g~~rvfqi~~~FR~E~~~~~r~~-EFt~le~e~af~~~~dvm~~~E~li~~----i~~~~~~~~---~--~~pf~r 273 (588)
T PRK00476 204 LMVAGFDRYYQIARCFRDEDLRADRQP-EFTQIDIEMSFVTQEDVMALMEGLIRH----VFKEVLGVD---L--PTPFPR 273 (588)
T ss_pred HHhcccCceEEEeceeecCCCCCCcCc-ccccceeeecCCCHHHHHHHHHHHHHH----HHHHHhCcc---C--CCCceE
Confidence 688999999999999999999888885 999999999999999999999999999 887765421 0 011111
Q ss_pred chhhhhhhhh-------------------------------h-------cCCCc-------cccHHHHHHHHHHhcc---
Q 011197 318 KGIIDRLSTV-------------------------------A-------ERDFV-------QLSYTDAIELLIKAKK--- 349 (491)
Q Consensus 318 ~~~~~~l~~~-------------------------------~-------~~~~~-------~it~~ea~~~l~~~~~--- 349 (491)
.++.++++++ + +..++ +-..++..++.+..|.
T Consensus 274 ~ty~ea~~~yg~dkPDlR~~~eI~DVT~if~~s~f~vf~~~l~~gg~VkaI~vp~~~~~~~rk~id~L~e~AK~~gakGL 353 (588)
T PRK00476 274 MTYAEAMRRYGSDKPDLRFGLELVDVTDLFKDSGFKVFAGAANDGGRVKAIRVPGGAAQLSRKQIDELTEFAKIYGAKGL 353 (588)
T ss_pred EEHHHHHHHHCCCCCcccCCceehhHHHHhccCCchhhhhhhccCCeEEEEEecCCCCccchhHHHHHHHHHHHcCCCce
Confidence 1111111110 0 00011 1112333333332220
Q ss_pred ---cccc-cc----------------------cccccc---chH---Hh-------hh------hccccccCccEEEEeC
Q 011197 350 ---KFEF-LV----------------------KWGCDL---QSE---HE-------RY------LTEEAFGGCPVIVSDY 384 (491)
Q Consensus 350 ---~~~~-~~----------------------~~g~~l---~~~---~e-------~~------l~~~~~~~~p~~i~~~ 384 (491)
.+.. .. +-|+.+ ... .. .. |.+. ....++||+||
T Consensus 354 ~~i~~~~~~l~~~~akflsee~~~~L~e~l~~k~GDll~~~A~~~~~v~~aLG~LR~~L~~~~~~~~~-~~~~f~Wv~df 432 (588)
T PRK00476 354 AYIKVNEDGLKGPIAKFLSEEELAALLERTGAKDGDLIFFGADKAKVVNDALGALRLKLGKELGLIDE-DKFAFLWVVDF 432 (588)
T ss_pred EEEEEcCCCCcCchhhcCCHHHHHHHHHHhCCCCCCEEEEECCchHHHHHHHHHHHHHHHHHcCCCCC-CCceEEEEEeC
Confidence 0000 00 000000 000 00 00 1111 11369999999
Q ss_pred CCC------------CcccccccCCC--------C--CceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcc--
Q 011197 385 PKE------------IKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD-- 440 (491)
Q Consensus 385 P~~------------~~pf~~~~~~~--------~--~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~-- 440 (491)
|.. ++||+++...| + ..+.+|||++||+ ||+|||+|+|+++.|++.|+..|++++
T Consensus 433 Plf~~~~~~~~~~~~HhpFT~p~~~d~~~l~~~~p~~~~a~~~dlv~ng~-E~~~gs~ri~~~~~q~~~~~~~~~~~~~~ 511 (588)
T PRK00476 433 PMFEYDEEEGRWVAAHHPFTMPKDEDLDELETTDPGKARAYAYDLVLNGY-ELGGGSIRIHRPEIQEKVFEILGISEEEA 511 (588)
T ss_pred CCCCccCCCCeeeeecCCCCCcCccChhHhhcCCHHHhhhheeeeEEeee-eeccceEEeCCHHHHHHHHHHcCCCHHHH
Confidence 994 89999975543 2 2578999999998 999999999999999999999999876
Q ss_pred --cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 441 --SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 441 --~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
.|+|||+|++||+|||||+|||+|||+|+|+|.+||||||+||++.+..
T Consensus 512 ~~~~~~~~~a~~~g~pph~g~~~G~dr~~~~~~~~~~irdvi~fp~~~~g~ 562 (588)
T PRK00476 512 EEKFGFLLDALKYGAPPHGGIAFGLDRLVMLLAGADSIRDVIAFPKTQSAQ 562 (588)
T ss_pred HHHHHHHHHHHhcCCCCCcceeccHHHHHHHHcCCccHHheeeccCCCCcc
Confidence 5899999999999999999999999999999999999999999987653
|
|
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-84 Score=635.38 Aligned_cols=414 Identities=31% Similarity=0.551 Sum_probs=374.8
Q ss_pred CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc-cchhhhhhcCCCCCcEEEEEEEEEecCCC---cee
Q 011197 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQGNVVPSQGS---KQK 101 (491)
Q Consensus 26 ~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G~v~~~~~~---~~~ 101 (491)
++.|+.|+|.|||++.|.+++++||.||||+|+ ||||++.+. ..|+.+ . |.+++.|.|.|++++.+.+ .++
T Consensus 120 ~~r~qrVkv~gWVhrlR~qk~l~FivLrdg~gf--lqCVl~~kl~~~yd~~-~--Ls~essv~vYG~i~~~p~GK~apgg 194 (545)
T KOG0555|consen 120 ENRGQRVKVFGWVHRLRRQKSLIFIVLRDGTGF--LQCVLSDKLCQSYDAL-T--LSTESSVTVYGTIKKLPEGKSAPGG 194 (545)
T ss_pred cccCceEEeehhhHhhhhcCceEEEEEecCCce--EEEEEcchhhhhhccc-c--ccccceEEEEEEEecCcCCCCCCCC
Confidence 578999999999999999999999999999986 999999764 234443 4 9999999999999998654 468
Q ss_pred EEEEEeeEEEEccCCCC---CCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeecc
Q 011197 102 VELKVNKIVLVGKSDPS---YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178 (491)
Q Consensus 102 ~el~~~~i~ils~~~~~---~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~ 178 (491)
.||.|+.++|++.|+++ .|+. ...+++.++++|||-+|....+.++++|+.+++++|++|.+.||+||.+|.|++.
T Consensus 195 hEl~vdy~Eiig~Apag~~~n~ln-e~s~~~~~LdnrHl~iRge~~s~vLK~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQT 273 (545)
T KOG0555|consen 195 HELNVDYWEIIGLAPAGGFDNPLN-EESDVDVLLDNRHLVIRGENASKVLKARAALLRAMRDHYFERGYTEVTPPTMVQT 273 (545)
T ss_pred ceEEeeeeeeecccCCCccccccc-ccCCcceEeccceeEEechhHHHHHHHHHHHHHHHHHHHHhcCceecCCCceEEE
Confidence 99999999999999865 3443 3567888899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCC
Q 011197 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENS 258 (491)
Q Consensus 179 ~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~ 258 (491)
..||++.+|.+ +|||.++||+||+|||++....++++||+|.++||+|.+
T Consensus 274 QVEGGsTLFkl------------------------------dYyGEeAyLTQSSQLYLEtclpAlgdvy~I~~SyRAEkS 323 (545)
T KOG0555|consen 274 QVEGGSTLFKL------------------------------DYYGEEAYLTQSSQLYLETCLPALGDVYCIQQSYRAEKS 323 (545)
T ss_pred EecCcceEEee------------------------------cccCchhhccchhHHHHHHhhhhcCceeEecHhhhhhhh
Confidence 99999999976 899999999999999999999999999999999999999
Q ss_pred CCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-cccccchhhcchhhhhhhhhhcCCCccccH
Q 011197 259 NTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKE-DMDFFNTWIEKGIIDRLSTVAERDFVQLSY 337 (491)
Q Consensus 259 ~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~-~l~~~~~~~~~~~~~~l~~~~~~~~~~it~ 337 (491)
+|+|||+|||++|+|++|.+++++|+.+|+|+.. .+.++++.+.. .+...++.+ +....||.|+.|
T Consensus 324 rTRRHLsEytHVEaE~afltfd~ll~~iE~lvc~----~vdr~l~dp~~~li~~lnP~f---------~~P~~PFkRm~Y 390 (545)
T KOG0555|consen 324 RTRRHLSEYTHVEAECAFLTFDDLLDRIEALVCD----SVDRLLEDPIAPLIKQLNPDF---------KAPKRPFKRMNY 390 (545)
T ss_pred hhhhhhhhheeeeeecccccHHHHHHHHHHHHHH----HHHHHHhChhhhhHHHhCCCC---------CCCCCchhcCCH
Confidence 9999999999999999999999999999999999 99999876543 333333221 235679999999
Q ss_pred HHHHHHHHHhcccccc--ccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceEEEEEEeCCeeE
Q 011197 338 TDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGE 414 (491)
Q Consensus 338 ~ea~~~l~~~~~~~~~--~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~gE 414 (491)
.||+++|++++++.+. ..++|+|+....|+.+.+.++ .|+|+++||.++++|||++.. |++.+++.|+++|||||
T Consensus 391 ~dAI~wLke~~vk~edg~~fefGdDI~eAaER~mtdtIg--~PIfLtrFpveiKsFYM~rc~dd~~lTESvD~LmPnVGE 468 (545)
T KOG0555|consen 391 SDAIEWLKEHDVKKEDGTDFEFGDDIPEAAERKMTDTIG--VPIFLTRFPVEIKSFYMKRCEDDPRLTESVDVLMPNVGE 468 (545)
T ss_pred HHHHHHHHhcCCcCccCcccccccchhhHHHHhhhhhcC--CceEEeeccccccceeeecccCccccceeeeeecCCccc
Confidence 9999999999876443 257899999999999999765 699999999999999998765 55789999999999999
Q ss_pred eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 415 LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 415 i~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
|+|||+|+.+.+++.+.+++.|+|+++|.||++.++||..||||+|||+||++|||++..+||||.+|||..+||.
T Consensus 469 IvGGSMRi~d~eeLlagfkRegId~~pYYWy~DqrkyGt~pHGGyGLGlERfL~wL~~r~~vre~cLyPRfv~RC~ 544 (545)
T KOG0555|consen 469 IVGGSMRIDDSEELLAGFKREGIDPDPYYWYTDQRKYGTCPHGGYGLGLERFLAWLCDRYHVREVCLYPRFVGRCT 544 (545)
T ss_pred cccceeeeccHHHHHHHHhhcCCCCCCceEEeeccccccCCCCcccccHHHHHHHHhcccchhheeecchhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999985
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-82 Score=688.36 Aligned_cols=434 Identities=21% Similarity=0.300 Sum_probs=317.8
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcE
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~ 85 (491)
.++++|.+|... +.|++|+|+|||+++|++|+++|++|||++|. ||||++++. ..++.++. |+.||+
T Consensus 4 ~r~~~cg~l~~~------~~g~~V~l~GWV~~~R~~G~l~FidLRD~~G~--iQvV~~~~~~~~~~~~~~~~--L~~Esv 73 (706)
T PRK12820 4 NDRSFCGHLSLD------DTGREVCLAGWVDAFRDHGELLFIHLRDRNGF--IQAVFSPEAAPADVYELAAS--LRAEFC 73 (706)
T ss_pred ccccccccCChh------hCCCEEEEEEEEEEEEcCCCcEEEEEEeCCcc--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 367999999875 78999999999999999999999999999975 999998653 23555667 999999
Q ss_pred EEEEEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCC--ccc-----------cChhhhc-cCccccCCChHH
Q 011197 86 IWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQ--KKR-----------VSREFLR-TKAHLRPRTNTF 144 (491)
Q Consensus 86 V~V~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~--~~~-----------~~~~~~r-~~~~l~~R~~~~ 144 (491)
|.|+|+|.+++. .++++||.+++++||++|. .+|++ ++. ...+.+| ++||||+|++.+
T Consensus 74 V~V~G~v~~r~~~~~n~~~~tg~iEl~~~~i~iL~~a~-~lP~~i~~~~~~~~~~~~~~~~~~e~~Rl~~RyLDLR~~~~ 152 (706)
T PRK12820 74 VALQGEVQKRLEETENPHIETGDIEVFVRELSILAASE-ALPFAISDKAMTAGAGSAGADAVNEDLRLQYRYLDIRRPAM 152 (706)
T ss_pred EEEEeEEeccCccccCCCCCCCcEEEEeeEEEEEecCC-CCCCCCcccccccccccccccccCHhhhhhCceeecCCHHH
Confidence 999999998532 2368999999999999996 34554 331 1234455 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
+++|++||++++++|+||.++||+||+||+|++++++|+++.+... .++..
T Consensus 153 ~~~lr~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~-----------------------------~~~~~ 203 (706)
T PRK12820 153 QDHLAKRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPS-----------------------------RIHPK 203 (706)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEee-----------------------------ecCCC
Confidence 9999999999999999999999999999999999999988765321 11222
Q ss_pred cc-ccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011197 225 PA-FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL 302 (491)
Q Consensus 225 ~~-~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~ 302 (491)
.+ +|+||||+||| ||++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||++ +++...
T Consensus 204 ~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E~~~t~r~-pEFT~LE~E~af~d~~dvm~l~E~li~~----v~~~~~ 278 (706)
T PRK12820 204 EFYALPQSPQLFKQLLMIAGFERYFQLARCFRDEDLRPNRQ-PEFTQLDIEASFIDEEFIFELIEELTAR----MFAIGG 278 (706)
T ss_pred cceecCCCHHHHHHHHHhccCCcEEEEechhcCCCCCCCcC-ccccccceeeccCCHHHHHHHHHHHHHH----HHHhcC
Confidence 33 49999999998 67899999999999999999988777 9999999999999999999999999999 664110
Q ss_pred -------------------hcCcccccccchhhcc-------h---hhhhhhh---hhcCC-------CccccHHHHH--
Q 011197 303 -------------------DNCKEDMDFFNTWIEK-------G---IIDRLST---VAERD-------FVQLSYTDAI-- 341 (491)
Q Consensus 303 -------------------~~~~~~l~~~~~~~~~-------~---~~~~l~~---~~~~~-------~~~it~~ea~-- 341 (491)
+..++|+.+--...+. + +...+++ +.+.. +.+-..++++
T Consensus 279 ~~~~~pf~r~ty~eA~~~yG~DKPDlR~~~~l~d~~~~~~~~~f~~f~~~~~~~g~v~~i~~~~~~~~~s~~~~~~~~~~ 358 (706)
T PRK12820 279 IALPRPFPRMPYAEAMDTTGSDRPDLRFDLKFADATDIFENTRYGIFKQILQRGGRIKGINIKGQSEKLSKNVLQNEYAK 358 (706)
T ss_pred cCCCCCceEEEHHHHHHHhCCCCCccccCcEEEEHHHHhccCCchhhhhhhccCCeEEEEEeCCCccccCHHHHHHHHHH
Confidence 0111222211000000 0 0000000 00000 1111111101
Q ss_pred HHHHHhcc------cccc-c----------------------ccccccc------c-h----H---Hhhh------hccc
Q 011197 342 ELLIKAKK------KFEF-L----------------------VKWGCDL------Q-S----E---HERY------LTEE 372 (491)
Q Consensus 342 ~~l~~~~~------~~~~-~----------------------~~~g~~l------~-~----~---~e~~------l~~~ 372 (491)
++.+..|. .... . .+-|+.+ . . . .-.. |.+.
T Consensus 359 ~~~~~~g~~gl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gd~~~~~a~~~~~~~~~~LG~lR~~l~~~~~l~~~ 438 (706)
T PRK12820 359 EIAPSFGAKGMTWMRAEAGGLDSNIVQFFSADEKEALKRRFHAEDGDVIIMIADASCAIVLSALGQLRLHLADRLGLIPE 438 (706)
T ss_pred HHHHHcCCCceEEEEECCCCcCCchhccCCHHHHHHHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHHHHHHHcCCCCC
Confidence 11112110 0000 0 0000000 0 0 0 0000 1111
Q ss_pred cccCccEEEEeCCC-----------CCcccccccCCC--------C--CceEEEEEEeCCeeEeechhhhcccHHHHHHH
Q 011197 373 AFGGCPVIVSDYPK-----------EIKAFYMRQNDD--------G--RTVAAMDMLVPRIGELIGGSQREERLEYLEGR 431 (491)
Q Consensus 373 ~~~~~p~~i~~~P~-----------~~~pf~~~~~~~--------~--~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~ 431 (491)
- ...++||+|||. .++||+++..+| + -.+..|||++||+ ||+|||+|+|+++.|++.
T Consensus 439 ~-~~~flWV~dFPlfe~~~e~~~~a~HHPFT~p~~~d~~~l~~~~p~~~~~~~YDLV~nG~-E~ggGs~Rih~~~~q~~~ 516 (706)
T PRK12820 439 G-VFHPLWITDFPLFEATDDGGVTSSHHPFTAPDREDFDPGDIEELLDLRSRAYDLVVNGE-ELGGGSIRINDKDIQLRI 516 (706)
T ss_pred C-CceEEEEEeCCcccCCCCCCeeeeeCCCCCcCccChhhhccCChHHhhhheeeEEecce-eeccceEEeCCHHHHHHH
Confidence 0 136899999999 479999975432 1 1467999999998 999999999999999999
Q ss_pred HHHcCCCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 432 LDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 432 ~~~~g~~~~~----~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
|+..|+++++ |++||+|++||+|||||+|+|+|||+|+|||.+||||||+||++....
T Consensus 517 f~~lg~~~~~~~~~Fgf~l~a~~~G~pphgG~a~G~dRlvm~l~~~~sirdviaFPK~~~g~ 578 (706)
T PRK12820 517 FAALGLSEEDIEDKFGFFLRAFDFAAPPHGGIALGLDRVVSMILQTPSIREVIAFPKNRSAA 578 (706)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHhcCCCCCCceeccHHHHHHHHcCCccHHHhcccCCCCCCC
Confidence 9999998754 789999999999999999999999999999999999999999987653
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-80 Score=630.62 Aligned_cols=319 Identities=45% Similarity=0.782 Sum_probs=285.3
Q ss_pred cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCC
Q 011197 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVD 205 (491)
Q Consensus 126 ~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~ 205 (491)
++.++++++||||+|++.+++++++||.|++++|+||.++||+||+||+|+++++++++++|++
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~---------------- 65 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKV---------------- 65 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCcccc----------------
Confidence 4577888999999999999999999999999999999999999999999999999999999975
Q ss_pred CCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHH
Q 011197 206 AIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMA 284 (491)
Q Consensus 206 ~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~ 284 (491)
+||++++||++|||+|||+++.|++|||+||||||||++++.||||||||||||++|+ |++|+|+
T Consensus 66 --------------~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~ 131 (322)
T cd00776 66 --------------SYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMD 131 (322)
T ss_pred --------------ccCCCcceecCCHHHHHHHHHHhhhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHH
Confidence 7889999999999999986655599999999999999998899999999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchH
Q 011197 285 CATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 364 (491)
Q Consensus 285 ~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~ 364 (491)
++|++|++ ++..+.+.++.++..... .......+..||+++||.||++++++.+.. ....||.+++.+
T Consensus 132 ~~e~ll~~----~~~~l~~~~~~~~~~~~~------~~~~~~~~~~~~~rit~~eA~~~l~~~~~~--~~~~~~~~l~~~ 199 (322)
T cd00776 132 LIEELIKY----IFKRVLERCAKELELVNQ------LNRELLKPLEPFPRITYDEAIELLREKGVE--EEVKWGEDLSTE 199 (322)
T ss_pred HHHHHHHH----HHHHHHhccHHHHhhhhc------cCcccccCCCCceEEEHHHHHHHHHHcCCC--CCCCccchhcHH
Confidence 99999999 999998877666544210 011111235689999999999999987753 225689999999
Q ss_pred HhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHH
Q 011197 365 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 443 (491)
Q Consensus 365 ~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~ 443 (491)
+|++|.+.+.. +|+||+|||.+++|||++.++ ++++++|||||++|++||+||++|++|+++|+++++++|++++.++
T Consensus 200 ~e~~l~~~~~~-~p~fi~~~P~~~~pfy~~~~~~~~~~~~~fdl~~~G~~El~~g~~r~~d~~~l~~r~~~~g~~~~~~~ 278 (322)
T cd00776 200 HERLLGEIVKG-DPVFVTDYPKEIKPFYMKPDDDNPETVESFDLLMPGVGEIVGGSQRIHDYDELEERIKEHGLDPESFE 278 (322)
T ss_pred HHHHHHHHhCC-CcEEEECCccccCCceeeecCCCCCeeEEEEEEcCCCeEEeeceeecCCHHHHHHHHHHcCCChHHHH
Confidence 99999875533 899999999999999987654 4479999999999966999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 444 ~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||+|+++|+|||||||||||||+|++||.+|||||++|||+|+
T Consensus 279 ~yl~a~~~G~pp~~G~giGidRL~m~~~g~~~Irdv~~FPr~~~ 322 (322)
T cd00776 279 WYLDLRKYGMPPHGGFGLGLERLVMWLLGLDNIREAILFPRDPK 322 (322)
T ss_pred HHHHHHHCCCCCCceeeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 99999999999999999999999999999999999999999985
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-78 Score=616.62 Aligned_cols=318 Identities=29% Similarity=0.486 Sum_probs=279.5
Q ss_pred ChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCC----CceeeeecCCCcccccCC
Q 011197 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAG----EQFCVTTLIPSSREAAES 202 (491)
Q Consensus 127 ~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~----~~F~vt~~~~~~~~~~~~ 202 (491)
+.+...++|++++|++.++++|++||+|++++|+||.++||+||+||+|+++++++.+ .+|.+.
T Consensus 9 ~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~------------ 76 (335)
T PRK06462 9 EYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQI------------ 76 (335)
T ss_pred chhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCcccc------------
Confidence 5566678999999999999999999999999999999999999999999998776432 223221
Q ss_pred CCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCC--CcccccccceeeEeccCCHH
Q 011197 203 PVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLK 280 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~ 280 (491)
..+||++++||++|||+|||++++|++||||||||||||++++ .||||||||||||++|+|++
T Consensus 77 ---------------~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d~~ 141 (335)
T PRK06462 77 ---------------SIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGADLD 141 (335)
T ss_pred ---------------ccccCCCceeeccCHHHHHHHHHhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCCHH
Confidence 1368899999999999999999999999999999999999976 69999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccc
Q 011197 281 DDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD 360 (491)
Q Consensus 281 ~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~ 360 (491)
|+|+++|+||++ +++.+.++++.++...+.. + ..+..||+++||.||+++|++.+.+ ...+.+
T Consensus 142 dlm~~~e~lv~~----i~~~~~~~~~~~i~~~~~~--------~-~~~~~p~~rit~~eA~~~l~~~~~~----~~~~~~ 204 (335)
T PRK06462 142 EVMDLIEDLIKY----LVKELLEEHEDELEFFGRD--------L-PHLKRPFKRITHKEAVEILNEEGCR----GIDLEE 204 (335)
T ss_pred HHHHHHHHHHHH----HHHHHHhhhHHHHHhcCCc--------c-ccCCCCCeEEEHHHHHHHHHhcCCC----cchHHH
Confidence 999999999999 9998888776666554321 0 0135689999999999999887654 233668
Q ss_pred cchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceEEEEEEeC-CeeEeechhhhcccHHHHHHHHHHcCCC
Q 011197 361 LQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLN 438 (491)
Q Consensus 361 l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~fdl~~~-G~gEi~~G~~r~~~~~~~~~~~~~~g~~ 438 (491)
++..+|++|.+.+ . .||||+|||+.++|||++.++ ++.+++|||||++ |+|||+||++|+++++++.++++++|++
T Consensus 205 l~~~~E~~l~~~~-~-~p~fi~~yP~~~~pfy~~~~~~~~~~~~rFdL~~~~g~gEl~~g~er~~~~~~l~~~~~~~g~~ 282 (335)
T PRK06462 205 LGSEGEKSLSEHF-E-EPFWIIDIPKGSREFYDREDPERPGVLRNYDLLLPEGYGEAVSGGEREYEYEEIVERIREHGVD 282 (335)
T ss_pred HhHHHHHHHHHHh-C-CCEEEECCChhhCCcccccCCCCCCEEEEEEEEeeCCCcEEeeeEEEecCHHHHHHHHHHcCCC
Confidence 8889999988654 4 799999999999999987654 4568999999997 8899999999999999999999999999
Q ss_pred cccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 439 RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 439 ~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
++.++|||+|++||+|||||||||||||+|++||.+|||||++|||+|++..
T Consensus 283 ~~~~~~yl~a~~~G~pp~~G~glGidRLvm~~~g~~~Irdv~~FPr~~g~~~ 334 (335)
T PRK06462 283 PEKYKWYLEMAKEGPLPSAGFGIGVERLTRYICGLRHIREVQPFPRVPGIVA 334 (335)
T ss_pred hHHHHHHHHHHHCCCCCCCeEEEcHHHHHHHHcCCCchheeeeccCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999864
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-78 Score=616.00 Aligned_cols=315 Identities=40% Similarity=0.673 Sum_probs=260.6
Q ss_pred hhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCC
Q 011197 128 REFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207 (491)
Q Consensus 128 ~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~ 207 (491)
.++++++|||++|++.++++|++||.+++++|+||.++||+||+||+|++++++|++++|.|.. .
T Consensus 2 ~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~-~-------------- 66 (335)
T PF00152_consen 2 EETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDS-E-------------- 66 (335)
T ss_dssp HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEE-S--------------
T ss_pred hhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCcccccccccc-c--------------
Confidence 4667899999999999999999999999999999999999999999999999999999998743 1
Q ss_pred CCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHH
Q 011197 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 208 ~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
..+||++++||++|||+||| ++++|++||||||||||||+++|.||+|||||||||++|+|++++|+++
T Consensus 67 ----------~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~~~~lm~~~ 136 (335)
T PF00152_consen 67 ----------PGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFADYDDLMDLI 136 (335)
T ss_dssp ----------TTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSSHHHHHHHH
T ss_pred ----------hhhhcccceecCcChHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCcHHHhHHHH
Confidence 13789999999999999997 6777899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc------------
Q 011197 287 TAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL------------ 354 (491)
Q Consensus 287 e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~------------ 354 (491)
|+||++ +++.+.+.... . .+.-.+..+|++++|.||++++...+.+....
T Consensus 137 e~li~~----i~~~~~~~~~~-~-------------~~~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~ 198 (335)
T PF00152_consen 137 EELIKY----IFKELLENAKE-L-------------SLNIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEEL 198 (335)
T ss_dssp HHHHHH----HHHHHHHHHHH-H-------------HTCEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHT
T ss_pred HHHHHH----HHHHHhccCcc-c-------------cccccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcc
Confidence 999999 88877643100 0 00111345699999999999988765322110
Q ss_pred -cccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCC-CceEEEEEEeCCeeEeechhhhcccHHHHHHHH
Q 011197 355 -VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDG-RTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 432 (491)
Q Consensus 355 -~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~-~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~ 432 (491)
..+|.++...+|+.|++.... .|+||+|||..++|||+..++++ .+++|||||++| +||+|||+|+||+++|++++
T Consensus 199 ~~~~~~~l~~~~e~~L~~~~~~-~p~fI~~~P~~~~pf~~~~~~~~~~~~~~fdl~~~g-~Ei~~G~~r~~d~~~l~~r~ 276 (335)
T PF00152_consen 199 EFEVGRLLSEEVEPYLVEKYFT-DPVFITDYPAEQSPFYKPPNDDDPGVAERFDLYIPG-GEIANGSQREHDPEELRERF 276 (335)
T ss_dssp THHCHHHHHHHHHHHHHHHHSS-SEEEEEEEBGGGSTTTBBBSSSTTTBBSEEEEEETT-EEEEEEEEB--SHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhcccC-CcEEEEecccccCcccccccccccccccceeEEEeC-EEEehHHhhhhHHHHHHHHh
Confidence 112556777888877754444 89999999999999999888776 799999999999 59999999999999999999
Q ss_pred HHcCCCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 433 DELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 433 ~~~g~~~~~----~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
++.+.+++. ++|||+|+++|+|||||||||+|||+|++||.+|||||++|||++.
T Consensus 277 ~~~~~~~~~~~~~~~~yl~~~~~G~pp~~G~glG~eRLvm~l~g~~~Irdv~~FPr~~~ 335 (335)
T PF00152_consen 277 EEQGIDPEEEMPIDEWYLEALKYGMPPHGGFGLGLERLVMLLLGLKNIRDVIPFPRDRQ 335 (335)
T ss_dssp HHTTHHGGGSHHHGHHHHHHHHTT--SEEEEEEEHHHHHHHHHT-SSGGGGSSS-CBT-
T ss_pred hhcccccccccchhHhHHHhhhccCcccCcceehHHHHHHHHcCCCcHHheecCCCCCC
Confidence 999987777 8999999999999999999999999999999999999999999863
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-71 Score=558.81 Aligned_cols=412 Identities=22% Similarity=0.328 Sum_probs=315.6
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhh--hhhcCCCCCcEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ--VKSGLITTGASIW 87 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~--~~~~~L~~gd~V~ 87 (491)
++..|.++..+ .+|++|.++||+...|.+|.+.|..|||..|. +|+.++.+.....+ ... ++.+|+|.
T Consensus 34 ~t~~~~el~~~------~vg~kv~l~GWl~~~~~~k~~~F~~LRD~~G~--vq~lls~~s~~l~~~~~~~--v~~e~vv~ 103 (628)
T KOG2411|consen 34 RTSLCGELSVN------DVGKKVVLCGWLELHRVHKMLTFFNLRDAYGI--VQQLLSPDSFPLAQKLEND--VPLEDVVQ 103 (628)
T ss_pred hhccchhhccC------ccCCEEEEeeeeeeeeccccceEEEeeccCcc--eEEEecchhhhHHhcccCC--CChhheEe
Confidence 45778888765 79999999999999999999999999999974 89888876532222 233 89999999
Q ss_pred EEEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCccc-------cChhhhccCccccCCChHHHHHHHHHHH
Q 011197 88 IQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR-------VSREFLRTKAHLRPRTNTFGAVARVRNA 153 (491)
Q Consensus 88 V~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~~-------~~~~~~r~~~~l~~R~~~~~~~~~~Rs~ 153 (491)
|+|+++..+. .+|.+|+.++++++++++...+|+.-.+ .+......+|||+||.+.++..+|+||.
T Consensus 104 v~gtvv~Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld~~~~er~rl~~RyldLR~~kmq~nLrlRS~ 183 (628)
T KOG2411|consen 104 VEGTVVSRPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELDDLAGERIRLRFRYLDLRRPKMQNNLRLRSN 183 (628)
T ss_pred eeeeEecccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhhccccccccchhhhhhhccHHHHHHHHHHHH
Confidence 9999987632 3578999999999999998878865321 2333344899999999999999999999
Q ss_pred HHHHHHHHHhh-CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccch
Q 011197 154 LAYATHKFFQE-NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSG 232 (491)
Q Consensus 154 i~~~iR~ff~~-~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Sp 232 (491)
+...+|+||.+ .||+||+||+|...+++|+.++. |.+..+ . +.||. |.|||
T Consensus 184 ~v~~iR~yl~n~~GFvevETPtLFkrTPgGA~EFv-VPtr~~-----------------~------g~FYa----LpQSP 235 (628)
T KOG2411|consen 184 VVKKIRRYLNNRHGFVEVETPTLFKRTPGGAREFV-VPTRTP-----------------R------GKFYA----LPQSP 235 (628)
T ss_pred HHHHHHHHHhhhcCeeeccCcchhccCCCccceee-cccCCC-----------------C------Cceee----cCCCH
Confidence 99999999976 56999999999999999988865 432211 1 35664 77999
Q ss_pred hhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccc
Q 011197 233 QLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDF 311 (491)
Q Consensus 233 ql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~ 311 (491)
|.||| ||++|++|+|||++|||+|+++.+|+ |||||+|+||+|.+.+|+|+++|+++++ ++....+.
T Consensus 236 QQfKQlLMvsGidrYyQiARCfRDEdlR~DRQ-PEFTQvD~EMsF~~~~dim~liEdll~~----~ws~~k~~------- 303 (628)
T KOG2411|consen 236 QQFKQLLMVSGIDRYYQIARCFRDEDLRADRQ-PEFTQVDMEMSFTDQEDIMKLIEDLLRY----VWSEDKGI------- 303 (628)
T ss_pred HHHHHHHHHhchhhHHhHHhhhcccccCcccC-CcceeeeeEEeccCHHHHHHHHHHHHHH----hchhhcCC-------
Confidence 99999 78999999999999999999999998 9999999999999999999999999999 65544321
Q ss_pred cchhhcchhhhhhhhhhcCCCccccHHHHHHH------------------------------------------------
Q 011197 312 FNTWIEKGIIDRLSTVAERDFVQLSYTDAIEL------------------------------------------------ 343 (491)
Q Consensus 312 ~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~------------------------------------------------ 343 (491)
-+..||+||||+||++.
T Consensus 304 ---------------~l~~PF~riTY~~Am~~YG~DKPD~Rf~l~l~dv~~~~~~~~~~~~~~d~l~~~~~vv~~~~~~~ 368 (628)
T KOG2411|consen 304 ---------------QLPVPFPRITYADAMDKYGSDKPDTRFPLKLKDVSESISKSFEEALLSDGLISVEIVVLGAKKYS 368 (628)
T ss_pred ---------------CCCCCcccccHHHHHHHhCCCCCcccCCcEecchHHhhhhhhhhhhhcCCccceEEEEecccccc
Confidence 01223344444443331
Q ss_pred -------------------------------------------------HHHhccccccc--ccccc-------------
Q 011197 344 -------------------------------------------------LIKAKKKFEFL--VKWGC------------- 359 (491)
Q Consensus 344 -------------------------------------------------l~~~~~~~~~~--~~~g~------------- 359 (491)
.+..+..-++- ..+|.
T Consensus 369 ~s~~~~rk~~e~~~~~~~~~~~f~~~~~~~~~w~~~~~~l~~e~~~~el~~~~~l~~~Div~~~~g~~~~~~~~LgrlRL 448 (628)
T KOG2411|consen 369 NSNYKKRKIYESLGKSGFVGLPFPIEHDANKNWFKKFSSLTDEAVAIELIKQLGLAEGDIVLLCVGPKVSVNTPLGRLRL 448 (628)
T ss_pred chhhHHhHHHHHHhhcccccceeeeeccchhhhhhhchhhccchHHHHHHHHhCCCCCCEEEEeccCCccCCCchHHHHH
Confidence 11111100000 00111
Q ss_pred ccchHHhhhhccccccCccEEEEeCCCC-------------CcccccccCCC-------C--CceEEEEEEeCCeeEeec
Q 011197 360 DLQSEHERYLTEEAFGGCPVIVSDYPKE-------------IKAFYMRQNDD-------G--RTVAAMDMLVPRIGELIG 417 (491)
Q Consensus 360 ~l~~~~e~~l~~~~~~~~p~~i~~~P~~-------------~~pf~~~~~~~-------~--~~~~~fdl~~~G~gEi~~ 417 (491)
.+...+.+.+.++. ....+||+|||.. ++||++++.+| + -....|||++||+ ||+|
T Consensus 449 ~l~~l~~~~l~d~~-~~~~lWVvDFPLF~p~~E~~q~L~StHHPFTaP~~~Di~~L~s~p~~~rgqhYDlV~NGv-ElGG 526 (628)
T KOG2411|consen 449 VLQDLLVKNLRDKS-KFSFLWVVDFPLFSPWEEKNQRLESTHHPFTAPHPKDIDLLESAPEKIRGQHYDLVVNGV-ELGG 526 (628)
T ss_pred HHHHHHhccccccc-cceEEEEEeccccCccccCCceeccccCCCCCCChhhhhHhhcCchhhhcceeeeEEccE-eecC
Confidence 01111111111111 1268899999995 78999876543 1 1357899999998 9999
Q ss_pred hhhhcccHHHHHHHHHHc-CCCcccH--HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 418 GSQREERLEYLEGRLDEL-KLNRDSY--WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 418 G~~r~~~~~~~~~~~~~~-g~~~~~~--~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
||.|+|+.+.|.-.++.. +.+.+.+ +..|+|+.+|+|||||||+|+|||+|+|||.+||||||+||++...
T Consensus 527 GSiRIhn~diQr~vLe~iLk~p~~~~s~gHLL~ALd~GaPPHGGiAlGlDRlvaml~~a~sIRDVIAFPKt~~G 600 (628)
T KOG2411|consen 527 GSIRIHNPDIQRYVLEDILKIPEDAESKGHLLNALDMGAPPHGGIALGLDRLVAMLTGAPSIRDVIAFPKTTTG 600 (628)
T ss_pred ceeEecCHHHHHHHHHHHhcCchhhhhHHHHHHHhhcCCCCCCceeecHHHHHHHHcCCCchheeeeccccCCc
Confidence 999999999998888854 4444444 4899999999999999999999999999999999999999998654
|
|
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-71 Score=562.59 Aligned_cols=297 Identities=21% Similarity=0.291 Sum_probs=247.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 142 ~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
+.++++|++||.+++++|+||.++||+||+||+|+++++++++++|.+. .+|
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~----------------------------~~~ 53 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITH----------------------------HNA 53 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEec----------------------------cCC
Confidence 5688999999999999999999999999999999998888778899641 157
Q ss_pred cCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300 (491)
Q Consensus 222 f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~ 300 (491)
|+.++||+||||+||| ++++|++|||+||||||||++ ++||||||||||||++|+|++|+|+++|++|++ +++.
T Consensus 54 ~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~FR~E~~-~~rHl~EFt~le~e~~~~~~~~~m~~~e~li~~----i~~~ 128 (329)
T cd00775 54 LDMDLYLRIAPELYLKRLIVGGFERVYEIGRNFRNEGI-DLTHNPEFTMIEFYEAYADYNDMMDLTEDLFSG----LVKK 128 (329)
T ss_pred CCcceeeccCHHHHHHHHHhcCCCcEEEEeccccCCCC-CCCCCCceEEEEEeeecCCHHHHHHHHHHHHHH----HHHH
Confidence 7999999999999995 778899999999999999999 689999999999999999999999999999999 9888
Q ss_pred HHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhcc---------------------cccccccccc
Q 011197 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK---------------------KFEFLVKWGC 359 (491)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~---------------------~~~~~~~~g~ 359 (491)
+.+.+ ++.+.... .....||+++||.||++.+..... ++.....|+.
T Consensus 129 ~~~~~--~~~~~~~~----------~~~~~pf~rity~eA~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (329)
T cd00775 129 INGKT--KIEYGGKE----------LDFTPPFKRVTMVDALKEKTGIDFPELDLEQPEELAKLLAKLIKEKIEKPRTLGK 196 (329)
T ss_pred HhCCc--eeecCCcc----------ccCCCCceEEEHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCCCCCCCHHH
Confidence 86543 33322110 012358999999999986532111 1111113444
Q ss_pred ccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc----
Q 011197 360 DLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL---- 435 (491)
Q Consensus 360 ~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~---- 435 (491)
.++..+++++.+.+ + +|+||+|||+.++||||..++++++++|||||++|+ ||+||++|++++.++++++.+.
T Consensus 197 ~l~~l~~~~ve~~~-~-~p~fi~~yP~~~~~f~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~e~~~r~~~~~~~~ 273 (329)
T cd00775 197 LLDKLFEEFVEPTL-I-QPTFIIDHPVEISPLAKRHRSNPGLTERFELFICGK-EIANAYTELNDPFDQRERFEEQAKQK 273 (329)
T ss_pred HHHHHHHHHhcccc-C-CCEEEECCChHhCcCcCcCCCCCCeeEEEEeEECCE-EEEcccchhCCHHHHHHHHHHHHHHH
Confidence 45556667666544 4 899999999999999986666678999999999998 9999999999999999988763
Q ss_pred --CCCccc--HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011197 436 --KLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 436 --g~~~~~--~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
+.+++. ++|||+|+++|+|||||||||+|||+|+++|.+|||||++||++.
T Consensus 274 ~~~~~~~~~~~~~yl~a~~~G~pp~~G~glGleRL~m~~~g~~~Irdv~~Fp~~~ 328 (329)
T cd00775 274 EAGDDEAMMMDEDFVTALEYGMPPTGGLGIGIDRLVMLLTDSNSIRDVILFPAMR 328 (329)
T ss_pred HcCCCccccchHHHHHHHHCCCCCCCcEEecHHHHHHHHcCCCcHHhcccCCCCC
Confidence 555543 589999999999999999999999999999999999999999975
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-70 Score=550.12 Aligned_cols=290 Identities=22% Similarity=0.279 Sum_probs=250.3
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeecceeecc-CCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccc
Q 011197 148 ARVRNALAYATHKFFQENGFIWISSPIITAS-DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA 226 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~-~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 226 (491)
+++|+.+++++|+||.++||+||+||+|+++ .+++++++|++...+ .+++++++
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~-------------------------~~~~~~~~ 55 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLG-------------------------PDGEGRPL 55 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccC-------------------------CCCCCcce
Confidence 5789999999999999999999999999998 467889999763322 13457899
Q ss_pred ccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011197 227 FLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305 (491)
Q Consensus 227 ~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~ 305 (491)
||++||||||| ++++|++||||||||||||++ ++||||||||||||++|.|++|+|+++|+|+++ +++.+
T Consensus 56 yL~~Spql~lk~ll~~g~~rVfeigp~FRaE~~-~~rHl~EFtmLE~e~~~~d~~d~m~~~e~li~~----i~~~~---- 126 (304)
T TIGR00462 56 YLQTSPEYAMKRLLAAGSGPIFQICKVFRNGER-GRRHNPEFTMLEWYRPGFDYHDLMDEVEALLQE----LLGDP---- 126 (304)
T ss_pred eeecCHHHHHHHHHhccCCCEEEEcCceeCCCC-CCCcccHHHhHHHHHHcCCHHHHHHHHHHHHHH----HHHhc----
Confidence 99999999996 889999999999999999999 689999999999999999999999999999999 87641
Q ss_pred cccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhcc---ccc-cCccEEE
Q 011197 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAF-GGCPVIV 381 (491)
Q Consensus 306 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~---~~~-~~~p~~i 381 (491)
..+|.+.++.++++++++.++.+.+.+++.+++++.|+.+ .++.+++..+|+++.+ +.+ .++|+||
T Consensus 127 ------~~~~~~it~~ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~d~~~~~e~~l~~~ie~~~~~~~p~fi 196 (304)
T TIGR00462 127 ------FAPWERLSYQEAFLRYAGIDPLTASLDELAAAAAAHGVRA----SEEDDRDDLLDLLFSEKVEPHLGFGRPTFL 196 (304)
T ss_pred ------CCCcEEEEHHHHHHHHhCCCcccCCHHHHHHHHHHcCCCC----CCCCChhHHHHHHHHHHHHHhcCCCCCEEE
Confidence 1344455667777788888888888888888888877643 3566788888887753 223 2479999
Q ss_pred EeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHHhcCC
Q 011197 382 SDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRHYGS 453 (491)
Q Consensus 382 ~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-------~g~~~~~~-~~yl~~~~~G~ 453 (491)
+|||..++|||+..++++.+++|||||++|+ ||+||++|+++++++++++++ .|+++..+ +|||+|++||+
T Consensus 197 ~~yP~~~~~~~~~~~~~~~~~~rfdl~~~G~-Ei~~G~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~yl~~~~~G~ 275 (304)
T TIGR00462 197 YDYPASQAALARISPDDPRVAERFELYIKGL-ELANGFHELTDAAEQRRRFEADNAERKALGLPRYPLDERFLAALEAGL 275 (304)
T ss_pred EcCccccCcCccccCCCCCeeEEEEEEECCE-EEeeceeecCCHHHHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHcCC
Confidence 9999999999975555667999999999998 999999999999999988865 68888888 68999999999
Q ss_pred CCccceeccHHHHHHHHcCCCCccccccc
Q 011197 454 VPHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
|||||||||||||+|++||.+|||||++|
T Consensus 276 pP~~G~GiGieRL~m~l~g~~~Ir~vi~F 304 (304)
T TIGR00462 276 PECSGVALGVDRLLMLALGADSIDDVLAF 304 (304)
T ss_pred CCCCceEEcHHHHHHHHhCCCchhhcccC
Confidence 99999999999999999999999999998
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-69 Score=531.21 Aligned_cols=260 Identities=26% Similarity=0.468 Sum_probs=233.1
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc--Ccc
Q 011197 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--EKP 225 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--~~~ 225 (491)
+++||.+++++|+||.++||+||+||+|+++++++++++|.+ +|+ +++
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~------------------------------~~~~~g~~ 50 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLV------------------------------KYNALGLD 50 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEe------------------------------eecCCCCc
Confidence 578999999999999999999999999999999888899976 233 889
Q ss_pred cccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011197 226 AFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDN 304 (491)
Q Consensus 226 ~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~ 304 (491)
+||++|||+|+| ++++|++|||+|+||||+|+. +.+|++||||||||++|.|++|+|+++|+||++ +++.+.+.
T Consensus 51 ~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~e~~-~~~hl~EF~~le~e~~~~~~~dvm~~~e~lv~~----i~~~~~~~ 125 (269)
T cd00669 51 YYLRISPQLFKKRLMVGGLDRVFEINRNFRNEDL-RARHQPEFTMMDLEMAFADYEDVIELTERLVRH----LAREVLGV 125 (269)
T ss_pred EEeecCHHHHHHHHHhcCCCcEEEEecceeCCCC-CCCcccceeEEEEEEecCCHHHHHHHHHHHHHH----HHHHHhcc
Confidence 999999999997 567899999999999999954 899999999999999999999999999999999 99988776
Q ss_pred CcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeC
Q 011197 305 CKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDY 384 (491)
Q Consensus 305 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~ 384 (491)
+..++... ...+..||++|||+||++++. +|+||+||
T Consensus 126 ~~~~~~~~------------~~~~~~~~~rit~~ea~~~~~-------------------------------~p~fi~d~ 162 (269)
T cd00669 126 TAVTYGFE------------LEDFGLPFPRLTYREALERYG-------------------------------QPLFLTDY 162 (269)
T ss_pred cccccccc------------ccccCCCceEeeHHHHHHHhC-------------------------------CceEEECC
Confidence 65444221 012456999999999987531 59999999
Q ss_pred CCCCcccccccCC-CCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCccce
Q 011197 385 PKEIKAFYMRQND-DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGF 459 (491)
Q Consensus 385 P~~~~pf~~~~~~-~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~----~~~~yl~~~~~G~pp~~G~ 459 (491)
|+..+|||++.++ ++.+++|||||++|+ ||+|||+|+|++++|.+++++++++++ .++|||+|+++|+||||||
T Consensus 163 P~~~~~fy~~~~~~~~~~~~~fdl~~~g~-Ei~~G~~r~~d~~~l~~~~~~~~~~~~~~~~~~~~yl~a~~~G~pp~~G~ 241 (269)
T cd00669 163 PAEMHSPLASPHDVNPEIADAFDLFINGV-EVGNGSSRLHDPDIQAEVFQEQGINKEAGMEYFEFYLKALEYGLPPHGGL 241 (269)
T ss_pred CcccCCCCCCcCCCCCCeEEEEEEeeCCE-EEeeCchhcCCHHHHHHHHHHhCcChhhccccHHHHHHHHHcCCCCCceE
Confidence 9998999986654 457899999999996 999999999999999999999999988 8999999999999999999
Q ss_pred eccHHHHHHHHcCCCCcccccccCCCC
Q 011197 460 GLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 460 glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
|||||||+|++||.+|||||++|||++
T Consensus 242 glGieRL~m~~~g~~~Irdv~~FPr~~ 268 (269)
T cd00669 242 GIGIDRLIMLMTNSPTIREVIAFPKMR 268 (269)
T ss_pred eeHHHHHHHHHhCCCcHHHcccCCCCC
Confidence 999999999999999999999999986
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-64 Score=507.28 Aligned_cols=291 Identities=18% Similarity=0.169 Sum_probs=233.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCC-CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCEG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (491)
..+|++|+.+++++|+||.++||+||+||+|+..+..+ ...+|.+....+ ....+
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~------------------------~~~~~ 57 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGP------------------------GASQG 57 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccc------------------------cccCC
Confidence 46899999999999999999999999999999866543 345665421110 00127
Q ss_pred cccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 011197 224 KPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL 302 (491)
Q Consensus 224 ~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~ 302 (491)
+++||++|||++++ ++++|++|||+||||||||++ +.||++||||||||++|.|++|+|+++|+||++ ++..
T Consensus 58 ~~~~L~~SPe~~~kr~la~~~~rvf~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d~~dlm~~~E~li~~----i~~~-- 130 (306)
T PRK09350 58 KTLWLMTSPEYHMKRLLAAGSGPIFQICKSFRNEEA-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ----VLDC-- 130 (306)
T ss_pred cceEEecCHHHHHHHHhhccccceEEecceeecCCC-CCCCCcHHHhhhhhhhCCCHHHHHHHHHHHHHH----HHhc--
Confidence 88999999999994 888999999999999999999 899999999999999999999999999999999 7742
Q ss_pred hcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhh----hhccccccCcc
Q 011197 303 DNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHER----YLTEEAFGGCP 378 (491)
Q Consensus 303 ~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~----~l~~~~~~~~p 378 (491)
.+|...++.+.++++++.+....+.+++.+++.+.|..- ....+.+++..+++ ++.+.+..+.|
T Consensus 131 ----------~~~~~i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~l~~~~ve~~l~~~~p 198 (306)
T PRK09350 131 ----------EPAESLSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSN--IADEEEDRDTLLQLLFTFGVEPNIGKEKP 198 (306)
T ss_pred ----------CCceEEEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCC--cCCCCCCHHHHHHHHHHHHHHHhcCCCCC
Confidence 123333455667777777777778878777776665410 01112233333333 33333332469
Q ss_pred EEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH-------cCCCcccH-HHHHHHHh
Q 011197 379 VIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE-------LKLNRDSY-WWYLDLRH 450 (491)
Q Consensus 379 ~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~-------~g~~~~~~-~~yl~~~~ 450 (491)
+||+|||..++|||++.++++.+++|||||++|+ ||+|||+|++|++++++++++ .|.++.++ +|||+|++
T Consensus 199 ~fi~~yP~~~~~~a~~~~~~~~~~~rfdl~i~G~-Ei~nG~~el~d~~~~~~r~~~~~~~~~~~g~~~~~~d~~~l~a~~ 277 (306)
T PRK09350 199 TFVYHFPASQAALAKISTEDHRVAERFEVYFKGI-ELANGFHELTDAREQRQRFEQDNRKRAARGLPQQPIDENLIAALE 277 (306)
T ss_pred EEEEcCccccCccccccCCCCCeeEEEEEEECCE-EEecchhhcCCHHHHHHHHHHHHHHHHhCCCCcccCcHHHHHHHH
Confidence 9999999999999986666668999999999998 999999999999999999874 67777788 56999999
Q ss_pred cCCCCccceeccHHHHHHHHcCCCCcccc
Q 011197 451 YGSVPHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 451 ~G~pp~~G~glGidRL~m~l~g~~~Irdv 479 (491)
+|+|||||||||||||+|++||.+|||||
T Consensus 278 ~G~pp~~G~giGidRL~m~~~g~~~Irdv 306 (306)
T PRK09350 278 AGLPDCSGVALGVDRLIMLALGAESISEV 306 (306)
T ss_pred cCCCCCCceEecHHHHHHHHcCCCCcccC
Confidence 99999999999999999999999999997
|
|
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-64 Score=496.64 Aligned_cols=271 Identities=29% Similarity=0.440 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccc
Q 011197 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 227 (491)
+++||++++++|+||.++||+||+||+|++++++|+++ |.+... ...+..+|
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~-f~~~~~---------------------------~~~~~~~~ 52 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGARD-FLVPSR---------------------------LHPGKFYA 52 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCC-ceeccc---------------------------cCCCceee
Confidence 47899999999999999999999999999999987765 654211 01134456
Q ss_pred cccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 011197 228 LTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCK 306 (491)
Q Consensus 228 L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~ 306 (491)
|++|||+||| ++++|++|||+||||||+|++++.|| +||||+|||++|.|++|+|+++|+||++ ++..+.+.
T Consensus 53 L~~Spql~lk~ll~~g~~~v~~i~~~fR~e~~~~~r~-~Ef~~~e~e~~~~~~~dlm~~~e~li~~----i~~~~~~~-- 125 (280)
T cd00777 53 LPQSPQLFKQLLMVSGFDRYFQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQEDIMSLIEGLLKY----VFKEVLGV-- 125 (280)
T ss_pred cccCHHHHHHHHHhcCcCcEEEeccceeCCCCCCCcc-ceeEEeEeeeccCCHHHHHHHHHHHHHH----HHHHHhCC--
Confidence 9999999997 67899999999999999999987766 5999999999999999999999999999 88877542
Q ss_pred ccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEe-CC
Q 011197 307 EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSD-YP 385 (491)
Q Consensus 307 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~-~P 385 (491)
..+.||+++||.||++.+ +.+ ..|+.++.. .+..+ ..++++++++ ||
T Consensus 126 --------------------~~~~p~~rity~eA~~~~---~~~----~~~~~d~~~-~~~~~----~~~~~~~~~~pf~ 173 (280)
T cd00777 126 --------------------ELTTPFPRMTYAEAMERY---GFK----FLWIVDFPL-FEWDE----EEGRLVSAHHPFT 173 (280)
T ss_pred --------------------CCCCCCceeeHHHHHHHh---CCC----CccccCCcc-cCChh----HHHHHHHHhCCCc
Confidence 124589999999999864 221 235544321 00000 0113344444 44
Q ss_pred CCCc---ccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCC----cccHHHHHHHHhcCCCCccc
Q 011197 386 KEIK---AFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAG 458 (491)
Q Consensus 386 ~~~~---pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~----~~~~~~yl~~~~~G~pp~~G 458 (491)
+... |++ +.++++.+++|||||++|+ ||+|||+|+|++++|++++++.|++ ++.++|||+|++||+|||||
T Consensus 174 ~~~~~~~~~~-~~~~~~~~~~~fdl~~~G~-Ei~~G~~r~~d~~~l~~r~~~~~~~~~~~~~~~~~yl~a~~~G~pP~~G 251 (280)
T cd00777 174 APKEEDLDLL-EKDPEDARAQAYDLVLNGV-ELGGGSIRIHDPDIQEKVFEILGLSEEEAEEKFGFLLEAFKYGAPPHGG 251 (280)
T ss_pred CCCcccchhh-hcCCccCeeEEEEEEeCCE-EEccCEEEcCCHHHHHHHHHHcCCChhhhhhhHHHHHHHHHCCCCCCCe
Confidence 4322 233 2233336899999999997 9999999999999999999999988 45689999999999999999
Q ss_pred eeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 459 FGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 459 ~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
||||||||+|++||.+|||||++|||+.+
T Consensus 252 ~giGidRL~m~~~g~~~Irdv~~FPr~~~ 280 (280)
T cd00777 252 IALGLDRLVMLLTGSESIRDVIAFPKTQN 280 (280)
T ss_pred EeEhHHHHHHHHcCCCchheEeecCCCCC
Confidence 99999999999999999999999999853
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-57 Score=433.24 Aligned_cols=297 Identities=22% Similarity=0.237 Sum_probs=239.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
.....+..|+.|+++||.||.++||+||+||.|+.++. +..-.+|++....+ +. .+
T Consensus 11 ~~~~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~------------------~~----~~- 67 (322)
T COG2269 11 ASIDNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGP------------------GG----AK- 67 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEecc------------------Cc----cc-
Confidence 34456899999999999999999999999999999887 45558898765543 00 11
Q ss_pred cCcccccccchhhHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRY 300 (491)
Q Consensus 222 f~~~~~L~~Spql~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~ 300 (491)
+.++||++|||+|| +|+++|.++|||||+||||++. +++|+|||||||||+++.||+.+|+.+.+|++. +++.
T Consensus 68 -~~~l~L~TSPEy~mKrLLAag~~~ifql~kvfRN~E~-G~~H~PEFTMLEWYrv~~d~~~lm~e~~~Ll~~----vl~~ 141 (322)
T COG2269 68 -GKPLWLHTSPEYHMKRLLAAGSGPIFQLGKVFRNEEM-GRLHNPEFTMLEWYRVGCDYYRLMNEVDDLLQL----VLEC 141 (322)
T ss_pred -cceeeeecCcHHHHHHHHHccCCcchhhhHHHhcccc-cccCCCceeEeeeeccCCcHHHHHHHHHHHHHH----HHcc
Confidence 68899999999999 6999999999999999999996 899999999999999999999999999999999 8764
Q ss_pred HHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhc----cccccC
Q 011197 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT----EEAFGG 376 (491)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~----~~~~~~ 376 (491)
.. .+.+ +.-+.+..++|.+.....-.+..+.+.+.|+.... +.+.+..+.+.++ +.++.+
T Consensus 142 ~~---~E~l---------s~~eaF~r~~gid~l~~~~~~L~~~~~~~~l~~~~----~~~~d~L~~~lf~~~VEP~lg~~ 205 (322)
T COG2269 142 VE---AERL---------SYQEAFLRYLGIDPLSADKTELREAAAKLGLSAAT----DEDWDTLLQLLFVEGVEPNLGKE 205 (322)
T ss_pred CC---ccee---------eHHHHHHHHhCCCcccccHHHHHHHHHhcCCCCCC----ccCHHHHHHHHHHhhcCcccCCC
Confidence 31 1122 33345556677666654444444555555554221 2344555555443 344557
Q ss_pred ccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc-------CCCccc-HHHHHHH
Q 011197 377 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDS-YWWYLDL 448 (491)
Q Consensus 377 ~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~-------g~~~~~-~~~yl~~ 448 (491)
+|+||+|||..++++++..+.|+.+++|||||+.|+ ||+||+-+.+|.++|++|++.. |+...+ .+.||.|
T Consensus 206 rpt~ly~fP~~qaaLA~i~~~D~rVAERFElY~kGi-ELaNgf~EltDa~EqrrRfe~dn~~r~~~~l~~~piDe~fl~A 284 (322)
T COG2269 206 RPTFLYHFPASQAALAQISTGDPRVAERFELYYKGI-ELANGFHELTDAAEQRRRFEQDNKERARRGLPQYPIDEDFLAA 284 (322)
T ss_pred CceEEEeCcHHHHHhhccCCCCcchhhhhhheeeee-eecccchhcCCHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHH
Confidence 999999999999999998888889999999999999 9999999999999999998642 232222 2789999
Q ss_pred HhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011197 449 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 449 ~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
+.. ||||+|++||+|||+|+++|..+|.+|++||...
T Consensus 285 la~-mP~cSGvALG~DRLvmLalg~~~i~~Vi~f~v~~ 321 (322)
T COG2269 285 LAR-MPPCSGVALGFDRLVMLALGAESIDDVIAFPVAR 321 (322)
T ss_pred HHh-CCCcccceecHHHHHHHHcCcchHHHHhhccccc
Confidence 998 9999999999999999999999999999999753
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.2e-21 Score=169.09 Aligned_cols=122 Identities=18% Similarity=0.339 Sum_probs=100.2
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc-hhhhhhcCCCCCcEEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~~~~~~~~L~~gd~V~V~ 89 (491)
+++|+++... +.|++|+|+|||+++|.+|+++|++|+|++| .+|+|++.+... +..++. |+.||+|.|+
T Consensus 2 ~~~~~~~~~~------~~g~~V~i~Gwv~~~R~~gk~~Fi~LrD~~g--~~Q~v~~~~~~~~~~~~~~--l~~gs~V~V~ 71 (135)
T cd04317 2 THYCGELRES------HVGQEVTLCGWVQRRRDHGGLIFIDLRDRYG--IVQVVFDPEEAPEFELAEK--LRNESVIQVT 71 (135)
T ss_pred ceehhhCChh------HCCCEEEEEEeEehhcccCCEEEEEEecCCe--eEEEEEeCCchhHHHHHhC--CCCccEEEEE
Confidence 4667777643 5789999999999999999999999999996 599999865433 556667 9999999999
Q ss_pred EEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCccc---cChhhhccCccccCCChH
Q 011197 90 GNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNT 143 (491)
Q Consensus 90 G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~~---~~~~~~r~~~~l~~R~~~ 143 (491)
|++.+++. ..+++||.++++++|++| .++|+..+. .+.+...+||||+||++.
T Consensus 72 G~~~~~~~~~~~~~~~~~~~El~~~~i~vl~~~-~~lP~~~~~~~~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 72 GKVRARPEGTVNPKLPTGEIEVVASELEVLNKA-KTLPFEIDDDVNVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred EEEECCCccccCCCCCCCcEEEEEeEEEEEECC-CCCCCccccccCCCHHHhhhcceeecCCCC
Confidence 99997642 346799999999999999 578887654 346666699999999864
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.1e-19 Score=152.87 Aligned_cols=101 Identities=27% Similarity=0.472 Sum_probs=88.6
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCC--ccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD--AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 31 ~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~--~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
+|+|+|||+++|.+||++|++|||++| .+|+|++.+ ...++.++. |+.||+|.|+|++.+++...+++||.+++
T Consensus 1 ~V~v~Gwv~~~R~~gk~~Fi~lrD~~g--~iQ~v~~~~~~~~~~~~~~~--l~~~s~v~V~G~v~~~~~~~~~~Ei~~~~ 76 (103)
T cd04319 1 KVTLAGWVYRKREVGKKAFIVLRDSTG--IVQAVFSKDLNEEAYREAKK--VGIESSVIVEGAVKADPRAPGGAEVHGEK 76 (103)
T ss_pred CEEEEEEEEeEEcCCCeEEEEEecCCe--eEEEEEeCCCCHHHHHHHhC--CCCCCEEEEEEEEEECCCCCCCEEEEEEE
Confidence 389999999999999999999999996 499999865 234566667 99999999999999988777789999999
Q ss_pred EEEEccCCCCCCCCccccChhhhccCccc
Q 011197 109 IVLVGKSDPSYPIQKKRVSREFLRTKAHL 137 (491)
Q Consensus 109 i~ils~~~~~~P~~~~~~~~~~~r~~~~l 137 (491)
++++|+|. ++|++++. +.++++++|||
T Consensus 77 i~vl~~a~-~~pi~~~~-~~~~~~~~rhL 103 (103)
T cd04319 77 LEIIQNVE-FFPITEDA-SDEFLLDVRHL 103 (103)
T ss_pred EEEEecCC-CCccCCCC-CHHHHhhccCC
Confidence 99999996 69998764 88899999986
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-18 Score=149.35 Aligned_cols=102 Identities=19% Similarity=0.350 Sum_probs=87.0
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V~V~ 89 (491)
.|.++... ..|++|+|+|||+++|.+|+++|++|||++| .+|+|++.+. ..++.+++ |+.||+|.|+
T Consensus 2 ~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~--l~~es~V~V~ 71 (108)
T cd04316 2 YSAEITPE------LDGEEVTVAGWVHEIRDLGGIKFVILRDREG--IVQVTAPKKKVDKELFKTVRK--LSRESVISVT 71 (108)
T ss_pred ChhhCchh------hCCCEEEEEEEEEeeeccCCeEEEEEecCCe--eEEEEEeCCCCCHHHHHHHhC--CCCcCEEEEE
Confidence 45566543 5789999999999999999999999999996 4999998653 24666777 9999999999
Q ss_pred EEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcc
Q 011197 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK 124 (491)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~ 124 (491)
|++.+++...+++||++++++++++|..++|++.+
T Consensus 72 G~v~~~~~~~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 72 GTVKAEPKAPNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred EEEEeCCCCCCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 99999987777899999999999999877888643
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.7e-18 Score=147.22 Aligned_cols=104 Identities=21% Similarity=0.311 Sum_probs=82.8
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 31 ~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
+|+|+|||+++|.+|+++|++|||+++ .+|+|++.+. ..|..+. ..|+.||+|.|+|++.+++++ ++||.++
T Consensus 1 ~v~v~GwV~~~R~~g~~~Fi~lrd~~~--~lQ~v~~~~~~~~~~~~~~~-~~l~~g~~V~v~G~v~~~~~g--~~El~~~ 75 (108)
T cd04322 1 EVSVAGRIMSKRGSGKLSFADLQDESG--KIQVYVNKDDLGEEEFEDFK-KLLDLGDIIGVTGTPFKTKTG--ELSIFVK 75 (108)
T ss_pred CEEEEEEEEEEecCCCeEEEEEEECCe--EEEEEEECCCCCHHHHHHHH-hcCCCCCEEEEEEEEEecCCC--CEEEEeC
Confidence 389999999999999999999999985 6999998653 3344432 139999999999999999874 7999999
Q ss_pred eEEEEccCCCCCCCCccc-cChhhhccCccccC
Q 011197 108 KIVLVGKSDPSYPIQKKR-VSREFLRTKAHLRP 139 (491)
Q Consensus 108 ~i~ils~~~~~~P~~~~~-~~~~~~r~~~~l~~ 139 (491)
+++|+|+|..++|+..+. .+.++.+++|||++
T Consensus 76 ~~~ils~~~~plP~~~~~~~~~~~r~~~R~ldl 108 (108)
T cd04322 76 EFTLLSKSLRPLPEKFHGLTDVETRYRQRYLDL 108 (108)
T ss_pred EeEEeeccCCCCCCCccCcCChhheeecccccC
Confidence 999999997444443332 24566668899875
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=135.50 Aligned_cols=89 Identities=24% Similarity=0.377 Sum_probs=75.3
Q ss_pred EEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc-----cchhhhhhcCCCCCcEEEEEEEEEecCCC-----c
Q 011197 31 MIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-----EGYDQVKSGLITTGASIWIQGNVVPSQGS-----K 99 (491)
Q Consensus 31 ~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~-----~~~~~~~~~~L~~gd~V~V~G~v~~~~~~-----~ 99 (491)
+|+|+|||+++|.+| +++|++|||++| .+|+|++.+. ..+..++. |+.||+|.|+|++.++++. .
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~ 76 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGY--TIQGVLAASAEGVSKQMVKWAGS--LSKESIVDVEGTVKKPEEPIKSCTQ 76 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCc--eEEEEEeCCcccCCHHHHHHHhc--CCCccEEEEEEEEECCCCcccCCCc
Confidence 389999999999998 999999999996 5999998653 12344567 9999999999999987652 2
Q ss_pred eeEEEEEeeEEEEccCCCCCCCCc
Q 011197 100 QKVELKVNKIVLVGKSDPSYPIQK 123 (491)
Q Consensus 100 ~~~el~~~~i~ils~~~~~~P~~~ 123 (491)
+++||+++++++|++|..++|++.
T Consensus 77 ~~~El~~~~i~il~~~~~~~P~~~ 100 (102)
T cd04320 77 QDVELHIEKIYVVSEAAEPLPFQL 100 (102)
T ss_pred CcEEEEEEEEEEEecCCCCCCCCC
Confidence 689999999999999987788764
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=128.74 Aligned_cols=81 Identities=41% Similarity=0.808 Sum_probs=72.7
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEE
Q 011197 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (491)
Q Consensus 32 V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~i 111 (491)
|+|+|||+++|.+|+++|++|||+++.+++|+|++++...++.++. |+.||+|.|+|.+.+++.+.+++||+++++++
T Consensus 2 v~v~Gwv~~~R~~g~~~Fi~LrD~s~~~~lQvv~~~~~~~~~~~~~--l~~gs~V~v~G~v~~~~~~~~~~El~~~~i~i 79 (82)
T cd04318 2 VTVNGWVRSVRDSKKISFIELNDGSCLKNLQVVVDKELTNFKEILK--LSTGSSIRVEGVLVKSPGAKQPFELQAEKIEV 79 (82)
T ss_pred EEEEEeEEEEEcCCcEEEEEEECCCCccCEEEEEeCcccCHHHHhc--CCCceEEEEEEEEEeCCCCCCCEEEEEEEEEE
Confidence 7999999999999999999999999866799999877555666777 99999999999999998877799999999999
Q ss_pred Ecc
Q 011197 112 VGK 114 (491)
Q Consensus 112 ls~ 114 (491)
++.
T Consensus 80 l~~ 82 (82)
T cd04318 80 LGE 82 (82)
T ss_pred ecC
Confidence 863
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-16 Score=128.39 Aligned_cols=81 Identities=20% Similarity=0.391 Sum_probs=71.4
Q ss_pred EEEEEEEEeeeec-CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCc----eeEEEE
Q 011197 31 MIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSK----QKVELK 105 (491)
Q Consensus 31 ~V~v~G~V~~~R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~----~~~el~ 105 (491)
+|+|+|||+++|+ +|+++|++|||++| ..+|||++++...|+.++. |+.||+|.|+|++.+++.+. +++||.
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g-~~iQvv~~~~~~~~~~~~~--l~~~s~V~V~G~v~~~~~~~~~~~~~~Ei~ 77 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNG-DIIQLVSTAKKDAFSLLKS--ITAESPVQVRGKLQLKEAKSSEKNDEWELV 77 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCC-CEEEEEECCCHHHHHHHhc--CCCCcEEEEEEEEEeCCCcCCCCCCCEEEE
Confidence 3899999999999 69999999999997 4699999876556777777 99999999999999988654 789999
Q ss_pred EeeEEEEcc
Q 011197 106 VNKIVLVGK 114 (491)
Q Consensus 106 ~~~i~ils~ 114 (491)
++++++||+
T Consensus 78 ~~~i~il~~ 86 (86)
T cd04321 78 VDDIQTLNA 86 (86)
T ss_pred EEEEEEecC
Confidence 999999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.3e-16 Score=157.94 Aligned_cols=200 Identities=21% Similarity=0.315 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-Ccc---c
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKP---A 226 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~---~ 226 (491)
-..++..++++|.+.||.|++.|.+.+ +.+..+.+|.|++|||++-.| .|| +.. .
T Consensus 113 l~~~~e~i~~iF~~mGF~~~~gp~IE~-------d~~NFDaLn~P~dHPARdmqD--------------TFy~~~~~~~~ 171 (335)
T COG0016 113 LTQTIEEIEDIFLGMGFTEVEGPEIET-------DFYNFDALNIPQDHPARDMQD--------------TFYLKDDREKL 171 (335)
T ss_pred HHHHHHHHHHHHHHcCceeccCCcccc-------cccchhhhcCCCCCCcccccc--------------eEEEcCCCCce
Confidence 356889999999999999999996655 556668889999999884221 233 211 2
Q ss_pred ccccchh-hHHHHHhcc---CCceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHHHHHHHHHH
Q 011197 227 FLTVSGQ-LNAETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQLYSCMQVRY 300 (491)
Q Consensus 227 ~L~~Spq-l~lql~~~g---~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~~~~i~~~ 300 (491)
-|++..- .--+.|... =-|+|.+|+|||+|.. +.+|+|||+|+|.-.... ++.+|+..++++++. ++..
T Consensus 172 lLRTHTs~vq~R~l~~~~~~P~k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~----~fg~ 246 (335)
T COG0016 172 LLRTHTSPVQARTLAENAKIPIKIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKK----FFGE 246 (335)
T ss_pred eecccCcHhhHHHHHhCCCCCceEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHH----hcCC
Confidence 2333221 222444443 3589999999999988 699999999999766644 588888888887777 4421
Q ss_pred HHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEE
Q 011197 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVI 380 (491)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~ 380 (491)
- .++ .+.+.++
T Consensus 247 ~-----~~v----------------------------------------------------------RfrpsyF------ 257 (335)
T COG0016 247 D-----VKV----------------------------------------------------------RFRPSYF------ 257 (335)
T ss_pred C-----cce----------------------------------------------------------EeecCCC------
Confidence 0 000 1122344
Q ss_pred EEeCCCCCcccccccCCCCCceEEEEEEeCC---eeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCcc
Q 011197 381 VSDYPKEIKAFYMRQNDDGRTVAAMDMLVPR---IGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHA 457 (491)
Q Consensus 381 i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G---~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~ 457 (491)
||+.+ +.-.|++++| +=||+|+++-. -+-++..|+++++|.-|
T Consensus 258 ---------PFTEP-------S~Evdv~~~~~~~WlEi~G~Gmv~------P~VL~~~G~~~~~~~Gf------------ 303 (335)
T COG0016 258 ---------PFTEP-------SAEVDVYCPGCGGWLEILGCGMVH------PNVLEAVGIDPEEYSGF------------ 303 (335)
T ss_pred ---------CCCCC-------eEEEEEEEcCCCCEEEEecccccC------HHHHHhcCCCCCcceEE------------
Confidence 77754 3457777773 44999999765 34566778777655322
Q ss_pred ceeccHHHHHHHHcCCCCcccc
Q 011197 458 GFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 458 G~glGidRL~m~l~g~~~Irdv 479 (491)
.||||+|||.|+..|+++||+.
T Consensus 304 AfGlGlERlAMLkygI~DIR~l 325 (335)
T COG0016 304 AFGLGLERLAMLKYGIPDIRDL 325 (335)
T ss_pred EEeecHHHHHHHHhCCcHHHHH
Confidence 4999999999999999999974
|
|
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.9e-16 Score=157.17 Aligned_cols=120 Identities=15% Similarity=0.178 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccc-
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT- 229 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~- 229 (491)
-+.+...||++|...||.|+++|.|++. .+..+.+|.+++|||++..+.. |.+...-|+
T Consensus 110 l~~~~~~Ir~if~~mGF~ev~gpeIes~-------~~NFdaLn~P~dHPaR~~~DTf-------------yI~~~~lLRT 169 (339)
T PRK00488 110 ITQTIEEIEDIFVGMGFEVAEGPEIETD-------YYNFEALNIPKDHPARDMQDTF-------------YIDDGLLLRT 169 (339)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCccccH-------HHHHHHhCCCCCCcccccCceE-------------EEcCCceeec
Confidence 3568899999999999999999999762 2223567777888887533321 112223344
Q ss_pred -cchhhHHHHHhcc-C-CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 230 -VSGQLNAETYATA-L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 230 -~Spql~lql~~~g-~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
+||-+. +.|... . -|+|++|+|||++.. +.+|.|+|+|+|.-.... ++.++...++.+++.
T Consensus 170 hTSp~qi-r~L~~~~~Pirif~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~ 235 (339)
T PRK00488 170 HTSPVQI-RTMEKQKPPIRIIAPGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKA 235 (339)
T ss_pred cCcHHHH-HHHHhcCCCeEEEEeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHH
Confidence 444432 444333 2 389999999999987 689999999999977765 588888888888877
|
|
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.2e-16 Score=150.68 Aligned_cols=205 Identities=19% Similarity=0.262 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S 231 (491)
+++.+.+|++|...||.||.+|.+.+. ....+.++.+++|++++..+.....++. .......-|+++
T Consensus 20 ~~~~~~i~~~~~~~Gf~e~~~~~v~s~-------~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~------~~~~~~~vLRTh 86 (247)
T PF01409_consen 20 TKFIREIRDIFVGMGFQEVEGPEVESE-------FYNFDALNIPQDHPARDMQDTFYISNPY------SAEEDYSVLRTH 86 (247)
T ss_dssp HHHHHHHHHHHHCTTSEEESTTSEEEH-------HHHTGGGTSTTTSCGGCGTTSEBSCSSS------BCECSSEEE-SS
T ss_pred HHHHHHHHHHHHHCCCeEeeCCeEEee-------HHHHHhhCcCCCccccccccceeeeccc------cccchhhhhhhh
Confidence 568889999999999999999999762 2224667888888877543322111100 000233445554
Q ss_pred hhhHH-HHHh---ccCCceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011197 232 GQLNA-ETYA---TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQLYSCMQVRYILDNC 305 (491)
Q Consensus 232 pql~l-ql~~---~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~~~~~i~~~~~~~~ 305 (491)
.--.+ +.|. ..--|+|+||+|||+|.. +.+|+|||+|+|.-.+.. ++.+++..++.|+++ ++. .
T Consensus 87 ts~~~~~~l~~~~~~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~----lfG----~- 156 (247)
T PF01409_consen 87 TSPGQLRTLNKHRPPPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKE----LFG----I- 156 (247)
T ss_dssp THHHHHHHHTTTSHSSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHH----HHT----T-
T ss_pred hhHHHHHHHHHhcCCCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHH----Hhh----c-
Confidence 33333 4441 123689999999999998 689999999999988876 588888888887777 541 0
Q ss_pred cccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCC
Q 011197 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYP 385 (491)
Q Consensus 306 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P 385 (491)
+++ +. +.+.++
T Consensus 157 --~~~--------------------------------------------~r------------~~ps~f----------- 167 (247)
T PF01409_consen 157 --DVK--------------------------------------------VR------------FRPSYF----------- 167 (247)
T ss_dssp --TEE--------------------------------------------EE------------EEECEE-----------
T ss_pred --ccc--------------------------------------------eE------------eecCCC-----------
Confidence 000 00 111222
Q ss_pred CCCcccccccCCCCCceEEEEEEe------CCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccce
Q 011197 386 KEIKAFYMRQNDDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 459 (491)
Q Consensus 386 ~~~~pf~~~~~~~~~~~~~fdl~~------~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~ 459 (491)
||+.+ +...|+++ .++ ||+++++-. -+.++..|+| +. -|...|
T Consensus 168 ----PfteP-------s~e~~i~~~~~~~~~wi-Evgg~G~vh------P~Vl~~~gid-~~------------~~~~A~ 216 (247)
T PF01409_consen 168 ----PFTEP-------SREADIYCGVCKGGGWI-EVGGCGMVH------PEVLENWGID-EE------------YPGFAF 216 (247)
T ss_dssp ----TTEEE-------EEEEEEEEECTTTTCEE-EEEEEEEE-------HHHHHHTT---TT------------SEEEEE
T ss_pred ----CcccC-------CeEEEEEEeeccCCCce-EEeeccccc------HhhhhccCcC-cc------------ceEEEe
Confidence 66643 45577777 234 998888654 3445566776 22 255679
Q ss_pred eccHHHHHHHHcCCCCcccc
Q 011197 460 GLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 460 glGidRL~m~l~g~~~Irdv 479 (491)
|||+|||+|+..|.++||+.
T Consensus 217 G~GleRlam~~~gi~diR~~ 236 (247)
T PF01409_consen 217 GLGLERLAMLKYGIPDIRLL 236 (247)
T ss_dssp EEEHHHHHHHHHT-SSGGHH
T ss_pred cCCHHHHHHHHcCCchHHHH
Confidence 99999999999999999974
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=124.92 Aligned_cols=80 Identities=29% Similarity=0.559 Sum_probs=70.4
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc-hhhhhhcCCCCCcEEEEEEEEEecCCC---ceeEEEEE
Q 011197 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGS---KQKVELKV 106 (491)
Q Consensus 31 ~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~~~~~~~~L~~gd~V~V~G~v~~~~~~---~~~~el~~ 106 (491)
+|+|+|||+++|.+|+++|++|||+++. +|++++.+... ++.++. |+.||+|.|+|++.+++.+ .+++||++
T Consensus 1 ~V~v~Gwv~~~R~~g~~~Fi~LrD~~~~--iQ~v~~~~~~~~~~~~~~--l~~es~V~V~G~v~~~~~~~~~~~~~Ei~~ 76 (84)
T cd04323 1 RVKVFGWVHRLRSQKKLMFLVLRDGTGF--LQCVLSKKLVTEFYDAKS--LTQESSVEVTGEVKEDPRAKQAPGGYELQV 76 (84)
T ss_pred CEEEEEEEEEEecCCCcEEEEEEcCCeE--EEEEEcCCcchhHHHHhc--CCCcCEEEEEEEEEECCcccCCCCCEEEEE
Confidence 3899999999999999999999999964 99999865432 556677 9999999999999999877 77899999
Q ss_pred eeEEEEcc
Q 011197 107 NKIVLVGK 114 (491)
Q Consensus 107 ~~i~ils~ 114 (491)
+++++|++
T Consensus 77 ~~i~vl~~ 84 (84)
T cd04323 77 DYLEIIGE 84 (84)
T ss_pred EEEEEEcC
Confidence 99999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.4e-15 Score=159.19 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEe-ecceeeccCCCCCCCceeeeecCCCcccccCCCCCC-----------CC------
Q 011197 147 VARVRNALAYATHKFFQENGFIWI-SSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA-----------IP------ 208 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV-~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~-----------~~------ 208 (491)
-+.--.+++..+|++|.+.||.|+ +.|.+.+ +.+....++.||+|||++..|. +|
T Consensus 219 ~~HPl~~~~~ei~~if~~mGF~e~~~g~~ves-------~f~NFDaL~~PqdHPARd~qDTFyl~~~~~~~~~p~~~~er 291 (492)
T PLN02853 219 HLHPLLKVRQQFRKIFLQMGFEEMPTNNFVES-------SFWNFDALFQPQQHPARDSHDTFFLKAPATTRQLPEDYVER 291 (492)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEecCCCCeec-------hhhhhhhhcCCCCCCCCCccceEEEcCccccccCcHHHHHH
Confidence 344456788999999999999999 4566665 4556678889999999973222 11
Q ss_pred --CCCCCCcCccccccC--------cccccccchhhHH-HHHh----cc--CCceEEEccccccCCCCCCccccccccee
Q 011197 209 --KTKDGLIDWSQDFFE--------KPAFLTVSGQLNA-ETYA----TA--LSNVYTFGPTFRAENSNTSRHLAEFWMIE 271 (491)
Q Consensus 209 --~~~~~~~~~~~~~f~--------~~~~L~~Spql~l-ql~~----~g--~~rvfeI~~~FR~E~~~t~rHl~EFtmlE 271 (491)
.+|+.+. ....-|+ ...-|++..--.. +.|. .+ --|+|.||+|||+|.. +.+|+|||+|+|
T Consensus 292 Vk~~He~G~-~gS~Gw~y~W~~~~a~~~vLRTHTTa~s~r~L~~~~~~~~~p~k~fsigrVfR~d~i-DatH~~eFhQ~E 369 (492)
T PLN02853 292 VKTVHESGG-YGSIGYGYDWKREEANKNLLRTHTTAVSSRMLYKLAQKGFKPKRYFSIDRVFRNEAV-DRTHLAEFHQVE 369 (492)
T ss_pred HHHHHhcCC-CCccccccccccchhcccccCCCCCHHHHHHHHHhhccCCCCcEEEeccceecCCCC-CcccCccceeEE
Confidence 1121110 0011122 2233433222222 2222 11 2389999999999998 699999999999
Q ss_pred eEeccC--CHHHHHHHHHHHHHH
Q 011197 272 PELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 272 ~e~~~~--~~~~lm~~~e~li~~ 292 (491)
.-.... ++.+++.+++++++.
T Consensus 370 G~vvd~~~t~~~L~g~l~~f~~~ 392 (492)
T PLN02853 370 GLVCDRGLTLGDLIGVLEDFFSR 392 (492)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHH
Confidence 888754 588888777766555
|
|
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.7e-15 Score=122.98 Aligned_cols=80 Identities=25% Similarity=0.548 Sum_probs=69.6
Q ss_pred EEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc--hhhhhhcCCCCCcEEEEEEEEEecCC---CceeEEEE
Q 011197 31 MIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG--YDQVKSGLITTGASIWIQGNVVPSQG---SKQKVELK 105 (491)
Q Consensus 31 ~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~--~~~~~~~~L~~gd~V~V~G~v~~~~~---~~~~~el~ 105 (491)
+|+|+|||+++|.+|+++|++|||+++ .+|++++.+... ++.++. |+.||+|.|+|.+.+++. ..+++||.
T Consensus 1 ~V~i~Gwv~~~R~~g~~~Fi~Lrd~~~--~iQ~v~~~~~~~~~~~~~~~--l~~~s~V~v~G~~~~~~~~~~~~~~~El~ 76 (85)
T cd04100 1 EVTLAGWVHSRRDHGGLIFIDLRDGSG--IVQVVVNKEELGEFFEEAEK--LRTESVVGVTGTVVKRPEGNLATGEIELQ 76 (85)
T ss_pred CEEEEEEEehhccCCCEEEEEEEeCCe--eEEEEEECCcChHHHHHHhC--CCCCCEEEEEeEEEECCCCCCCCCCEEEE
Confidence 389999999999999999999999995 599999876432 455667 999999999999999885 46789999
Q ss_pred EeeEEEEcc
Q 011197 106 VNKIVLVGK 114 (491)
Q Consensus 106 ~~~i~ils~ 114 (491)
++++++|++
T Consensus 77 ~~~i~il~~ 85 (85)
T cd04100 77 AEELEVLSK 85 (85)
T ss_pred EeEEEEECC
Confidence 999999985
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.8e-15 Score=155.28 Aligned_cols=137 Identities=14% Similarity=0.168 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecc-eeeccCCCCCCCceeeeecCCCcccccCCCCCC-------------CC----
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSP-IITASDCEGAGEQFCVTTLIPSSREAAESPVDA-------------IP---- 208 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TP-iL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~-------------~~---- 208 (491)
.+.--.+++..+|++|.+.||.|+++| .+.+ +.+....++.||+|||++..|. +|
T Consensus 227 ~~HPl~~~~~~i~~if~~mGF~e~~~~~~ves-------~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~ 299 (494)
T PTZ00326 227 NLHPLLKVRREFREILLEMGFEEMPTNRYVES-------SFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYV 299 (494)
T ss_pred CCChHHHHHHHHHHHHHhCCCEEecCCCCccc-------cchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHH
Confidence 344456788999999999999999877 4444 3455677889999999973221 11
Q ss_pred ----CCCCCCcCccccccC--------cccccccchhhHH-HHHhc--------c---CCceEEEccccccCCCCCCccc
Q 011197 209 ----KTKDGLIDWSQDFFE--------KPAFLTVSGQLNA-ETYAT--------A---LSNVYTFGPTFRAENSNTSRHL 264 (491)
Q Consensus 209 ----~~~~~~~~~~~~~f~--------~~~~L~~Spql~l-ql~~~--------g---~~rvfeI~~~FR~E~~~t~rHl 264 (491)
.+|+.+. ....-|+ ...-|++-.--.. +++.. + --|+|+||+|||+|.. +.+|+
T Consensus 300 ~~Vk~~He~G~-~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~-DatH~ 377 (494)
T PTZ00326 300 ERVKKVHEVGG-YGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETL-DATHL 377 (494)
T ss_pred HHHHHHhccCC-cCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCC-CCCcC
Confidence 1221110 0011112 2233433222222 33322 2 3489999999999998 69999
Q ss_pred ccccceeeEeccCC--HHHHHHHHHHHHHH
Q 011197 265 AEFWMIEPELAFAD--LKDDMACATAYLQL 292 (491)
Q Consensus 265 ~EFtmlE~e~~~~~--~~~lm~~~e~li~~ 292 (491)
|||+|+|......+ +.+++.++.++++.
T Consensus 378 ~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~ 407 (494)
T PTZ00326 378 AEFHQVEGFVIDRNLTLGDLIGTIREFFRR 407 (494)
T ss_pred ceeEEEEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 99999999998764 55555554444433
|
|
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.9e-14 Score=146.42 Aligned_cols=126 Identities=21% Similarity=0.292 Sum_probs=84.9
Q ss_pred CChHHHHHHHH-----HHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCCCceeeeecCCCcccccCCCCCCCCCCCCC
Q 011197 140 RTNTFGAVARV-----RNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (491)
Q Consensus 140 R~~~~~~~~~~-----Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
|.+..++++.. .+.+.+++|++|...||.||.||+|+.... +..+..-.....
T Consensus 190 r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~--------------------- 248 (417)
T PRK09537 190 RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELS--------------------- 248 (417)
T ss_pred cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccch---------------------
Confidence 77889999999 999999999999999999999999985421 000000000000
Q ss_pred CcCccccc--cCcccccc--cchhhHHHHHh-----ccCCceEEEccccccCCCCCCcccccccceeeEeccCC--HHHH
Q 011197 214 LIDWSQDF--FEKPAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDD 282 (491)
Q Consensus 214 ~~~~~~~~--f~~~~~L~--~Spql~lql~~-----~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~~l 282 (491)
... .+...+|+ ..|+++..+.. ..--|+|+||+|||+|.. +.+|++||+|++++....+ +.++
T Consensus 249 -----~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL 322 (417)
T PRK09537 249 -----KQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENL 322 (417)
T ss_pred -----hhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHH
Confidence 011 13345676 56776653321 112479999999999986 6899999999999998653 5555
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
+.+++++++.
T Consensus 323 ~~lleeLL~~ 332 (417)
T PRK09537 323 ENIIDDFLKH 332 (417)
T ss_pred HHHHHHHHHH
Confidence 5544444433
|
|
| >cd00645 AsnA Asparagine synthetase (aspartate-ammonia ligase) (AsnA) catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-13 Score=128.73 Aligned_cols=267 Identities=16% Similarity=0.144 Sum_probs=150.4
Q ss_pred HHHHHHHHHh-----hCCcEEeecceeeccCCC------CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 154 LAYATHKFFQ-----ENGFIWISSPIITASDCE------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 154 i~~~iR~ff~-----~~~F~EV~TPiL~~~~~e------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
.|..+++||. +.+.+.|..|+++....+ |.-++-.+ ..+ ++-
T Consensus 3 aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~f--~~k-------------------------~~~ 55 (309)
T cd00645 3 AIKFIKDFFQDNLAKELNLIRVSAPLFVEKGSGLNDNLNGVEKPVSF--KVK-------------------------ALP 55 (309)
T ss_pred hHHHHHHHHHHHHHHHhCeEEecCCeEEecCCCCccCCCCcccceEe--ecC-------------------------CCC
Confidence 3555666664 479999999999986554 11122111 100 000
Q ss_pred CcccccccchhhHHHH-Hh-ccC---CceEEEcccccc-CCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHH
Q 011197 223 EKPAFLTVSGQLNAET-YA-TAL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCM 296 (491)
Q Consensus 223 ~~~~~L~~Spql~lql-~~-~g~---~rvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~ 296 (491)
+..+-.-+|---|+++ +. -|| +-+|+=..+.|. |+. +..|.-==-|-|||.....-+--++...+.++.
T Consensus 56 ~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-dn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~---- 130 (309)
T cd00645 56 DATLEVVHSLAKWKRLALARYGFSLGEGLYTDMNAIRPDEDL-DNIHSIYVDQWDWEKVISKGERNLETLKETVNK---- 130 (309)
T ss_pred CceeEEeeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CccceeEeccccHHhhcCccccCHHHHHHHHHH----
Confidence 2333344555556664 32 245 558888888886 555 789976667778877755333333333333333
Q ss_pred HHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccc-hHHhhhhcccccc
Q 011197 297 QVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAFG 375 (491)
Q Consensus 297 i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~~~~~~ 375 (491)
+...+..... .+ ...+ ..+...+..++.=+|-+|..+. . | +++ .+-|..++..+
T Consensus 131 iy~~ik~te~-~~--~~~y------~~~~~~Lp~~i~FitsqeL~~~---Y------P-----~l~~keRE~~i~ke~-- 185 (309)
T cd00645 131 IYKAIKETEL-EV--NEKY------PQLEPILPEEITFITSQELEDR---Y------P-----DLTPKEREDAICKEH-- 185 (309)
T ss_pred HHHHHHHHHH-HH--HHHc------hhhhhcCCCceEEecHHHHHHH---C------C-----CCCHHHHHHHHHHHh--
Confidence 4433322100 00 0000 0011112212112333333222 1 0 222 23333444433
Q ss_pred CccEEEEeCCCCCcccccccC----CCCCceEEEEEEe------CCeeEeechhhhcccHHHHHHHHHHcC-CCcccHHH
Q 011197 376 GCPVIVSDYPKEIKAFYMRQN----DDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK-LNRDSYWW 444 (491)
Q Consensus 376 ~~p~~i~~~P~~~~pf~~~~~----~~~~~~~~fdl~~------~G~gEi~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~ 444 (491)
..|||+.--..++-= ++++ +-+.+.-+=|+++ ..+ ||.++++|.++ +.+.++++..| .+...+.|
T Consensus 186 -gaVFi~~IG~~L~~g-~~Hd~RapDYDDW~LNGDil~w~~~l~~a~-ELSSmGiRVde-e~L~~Ql~~~g~~dr~~l~~ 261 (309)
T cd00645 186 -GAVFIIGIGGKLSDG-KKHDGRAPDYDDWTLNGDILVWNPVLQRAF-ELSSMGIRVDE-ESLQKQLKLAGDEDRLELPF 261 (309)
T ss_pred -CcEEEEeccCcCCCC-CcCCCCCCCCcCccccceEEEEchhcCcee-eecCcceEecH-HHHHHHHHHcCCCccccCHH
Confidence 367776643322110 1111 1122344445544 267 99999999999 98999999988 56667776
Q ss_pred HHHHHhcC-CCCccceeccHHHHHHHHcCCCCccccccc
Q 011197 445 YLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 445 yl~~~~~G-~pp~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
++++..| +|||+|+|||+|||+|+|+|..+|.+|++-
T Consensus 262 -h~~ll~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVqas 299 (309)
T cd00645 262 -HKMLLNGELPQTIGGGIGQSRLCMFLLQKAHIGEVQAS 299 (309)
T ss_pred -HHHHHcCCCCccccccccHHHHHHHHhccchhcceeec
Confidence 9999999 899999999999999999999999999863
|
AsnA is a homodimeric enzyme which is structurally similiar to the catalytic core domain of class II aminoacyl-tRNA synthetases. Ammonia-dependent AsnA is not homologous to the glutamine-dependent asparagine synthetase AsnB. |
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.6e-13 Score=140.04 Aligned_cols=116 Identities=22% Similarity=0.286 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc--cCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF--FEK 224 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--f~~ 224 (491)
-..-.+.+.+.+|++|...||.||.||+|+...- -+.+.... .. . ...+. ++.
T Consensus 238 ~~~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~---~E~m~~~~-g~--------e-------------I~n~Iyk~ee 292 (453)
T TIGR02367 238 REDYLGKLERDITKFFVDRGFLEIKSPILIPAEY---IERMGIDN-DT--------E-------------LSKQIFRVDK 292 (453)
T ss_pred cccHHHHHHHHHHHHHHHCCCEEEECCeecchHH---HHhhcCcc-CC--------c-------------ccccceEecC
Confidence 3455688999999999999999999999983210 00000000 00 0 00000 123
Q ss_pred ccccc--cchhhHHHHHh-----ccCCceEEEccccccCCCCCCcccccccceeeEeccCC--HHHHHHHHHH
Q 011197 225 PAFLT--VSGQLNAETYA-----TALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATA 288 (491)
Q Consensus 225 ~~~L~--~Spql~lql~~-----~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~~lm~~~e~ 288 (491)
..+|+ ..|+++..+.. ..--|+|+||+|||+|.. +.+|+.||+|++++.+..+ +.|+..++.+
T Consensus 293 ~lvLRPdLTPsLaR~La~N~~~l~~PqKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDlealL~e 364 (453)
T TIGR02367 293 NFCLRPMLAPNLYNYLRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLEAIIKD 364 (453)
T ss_pred ceEecccCHHHHHHHHHHhhhhccCCeeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHHHHHHH
Confidence 35666 67787753321 113499999999999987 6899999999999998653 6665543333
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >PRK05425 asparagine synthetase AsnA; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.2e-12 Score=128.73 Aligned_cols=272 Identities=16% Similarity=0.099 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHHHHh-----hCCcEEeecceeeccCCCCCCCcee----eeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 149 RVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGAGEQFC----VTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 149 ~~Rs~i~~~iR~ff~-----~~~F~EV~TPiL~~~~~eg~~~~F~----vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
+-....++.++++|. +.+.+.|..|+++....+-+-++-- |+...+
T Consensus 9 ~~tq~aI~~iK~~F~~~L~~~LnL~rvsaPlfv~~~sGlnD~LnG~E~pV~F~~k------------------------- 63 (327)
T PRK05425 9 IETQQAISFVKDFFERQLAKKLNLIRVSAPLFVRVGSGLNDNLNGVEKPVSFKVK------------------------- 63 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCeeEecCCeEEcCCCCcccCCCCeecceEeecc-------------------------
Confidence 334455566666664 4799999999999865432111100 111000
Q ss_pred cccCcccccccchhhHHHHHhc--cC---CceEEEcccccc-CCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHH
Q 011197 220 DFFEKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLY 293 (491)
Q Consensus 220 ~~f~~~~~L~~Spql~lql~~~--g~---~rvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~ 293 (491)
+.-+.++-..+|--=|+++... +| +-+|+=..+.|. |+. +..|.-==-|-|||.....-+--++...+.++.
T Consensus 64 ~~~~~~~eiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~dE~l-d~~HS~yVDQWDWEkvI~~~~Rn~~~Lk~tV~~- 141 (327)
T PRK05425 64 DLPDATFEVVHSLAKWKRLALKRYGFSAGEGLYTDMNAIRPDEDL-DNTHSVYVDQWDWEKVIGKEERNLDYLKETVEK- 141 (327)
T ss_pred CCCCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCccc-CcccceEeccccHHHhCCccccCHHHHHHHHHH-
Confidence 0002233344555556664433 55 458888888876 555 789977677888887765333333344444444
Q ss_pred HHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccc-hHHhhhhccc
Q 011197 294 SCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEE 372 (491)
Q Consensus 294 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~~~ 372 (491)
+...+..... .+ ..++ + .+ +.+..++.=||-+|..+. . | +++ ++-|..++..
T Consensus 142 ---Iy~~ik~te~-~~--~~~y-~-----~~-~~Lp~~i~FitsqeL~~~---Y------P-----~l~~keRE~~i~ke 194 (327)
T PRK05425 142 ---IYKAIKATEK-AV--SKKY-P-----LL-PFLPEEITFITSQELEDR---Y------P-----DLTPKEREDAIAKE 194 (327)
T ss_pred ---HHHHHHHHHH-HH--HHhC-c-----cc-ccCCCceEEecHHHHHHH---C------C-----CCCHHHHHHHHHHH
Confidence 4433322100 00 0000 0 00 011111111233333222 1 0 122 2333344443
Q ss_pred cccCccEEEEeCCCCCcccccccC----CCCCceEEEEEEeC------CeeEeechhhhcccHHHHHHHHHHcC-CCccc
Q 011197 373 AFGGCPVIVSDYPKEIKAFYMRQN----DDGRTVAAMDMLVP------RIGELIGGSQREERLEYLEGRLDELK-LNRDS 441 (491)
Q Consensus 373 ~~~~~p~~i~~~P~~~~pf~~~~~----~~~~~~~~fdl~~~------G~gEi~~G~~r~~~~~~~~~~~~~~g-~~~~~ 441 (491)
+ ..|||+.--..++-= ++++ +.+.+.-+=|+++- .+ ||.++++|.+ ++.+.++++..| .+...
T Consensus 195 ~---gaVFi~~IG~~L~~g-~~Hd~RapDYDDW~LNGDilvw~~~l~~a~-ELSSmGiRVd-~e~L~~Qlk~~g~~dr~~ 268 (327)
T PRK05425 195 Y---GAVFLIGIGGKLSDG-KPHDGRAPDYDDWGLNGDILVWNPVLDDAF-ELSSMGIRVD-EEALKRQLKLTGDEDRLE 268 (327)
T ss_pred h---CcEEEEeccCcCCCC-CcCCCCCCCCcCcccCceEEEEccccCcee-eecCcceEec-HHHHHHHHHHcCCCcccc
Confidence 3 367776543322110 1111 11123344455442 57 9999999999 999999999998 57778
Q ss_pred HHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 442 YWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 442 ~~~yl~~~~~G-~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
+.||+++ ..| +|||+|.|||+|||+|+|+|..+|.+|++
T Consensus 269 l~~h~~l-l~g~LP~TiGgGIGqsRL~M~LL~k~HIgEVq~ 308 (327)
T PRK05425 269 LEWHQAL-LNGELPLTIGGGIGQSRLCMLLLQKAHIGEVQA 308 (327)
T ss_pred CHHHHHH-HhCCCCCcccccccHHHHHHHHhccchhccccc
Confidence 8999998 777 89999999999999999999999999986
|
|
| >PTZ00213 asparagine synthetase A; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.2e-12 Score=125.96 Aligned_cols=67 Identities=24% Similarity=0.199 Sum_probs=61.9
Q ss_pred eEeechhhhcccHHHHHHHHHHcC-CCcccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 413 GELIGGSQREERLEYLEGRLDELK-LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 413 gEi~~G~~r~~~~~~~~~~~~~~g-~~~~~~~~yl~~~~~G-~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
.||.++++|. +++.+.++++..| .+...+.||++ +..| +|+|+|+|||+|||+|+|+|..+|.||+.
T Consensus 266 ~ELSSmGiRV-d~esL~~Qlk~~g~~dr~~l~~h~~-ll~g~LP~TiGGGIGqsRL~M~LL~k~HIgEVQ~ 334 (348)
T PTZ00213 266 LELSSMGIRV-DAEALRRQLEITNNTDRLKCMWHQM-LLNGELPQTIGGGIGQSRLCMFMLRKKHIGEVQC 334 (348)
T ss_pred eecCCcceEE-cHHHHHHHHHHcCCCccccCHHHHH-HHcCCCCCcccccccHHHHHHHHhCcchhcceee
Confidence 5999999999 9999999999998 57778899999 6667 89999999999999999999999999976
|
|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-13 Score=128.30 Aligned_cols=101 Identities=23% Similarity=0.317 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCCCcee-eeecCCCcccccCCCCCCCCCCCCCCcCccccccCccccc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFC-VTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFL 228 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L 228 (491)
|+.+.+.+|++|.+.||.||.||.++.... +..+.... +...+ +.-+...+|
T Consensus 2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~--------------------------~~~~~~~~L 55 (211)
T cd00768 2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVG--------------------------AENEEDLYL 55 (211)
T ss_pred HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeee--------------------------cCCCCEEEE
Confidence 678999999999999999999999988532 21110000 10111 112455689
Q ss_pred ccchhhHH-HHHhc----cCCceEEEccccccCCCCCC--cccccccceeeEeccCC
Q 011197 229 TVSGQLNA-ETYAT----ALSNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFAD 278 (491)
Q Consensus 229 ~~Spql~l-ql~~~----g~~rvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~ 278 (491)
+.|....+ ++++. .--|+||||+|||+|.. +. +|+.||+|+++++.+.+
T Consensus 56 R~s~~~~l~~~~~~n~~~~~~~lfeig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~ 111 (211)
T cd00768 56 RPTLEPGLVRLFVSHIRKLPLRLAEIGPAFRNEGG-RRGLRRVREFTQLEGEVFGED 111 (211)
T ss_pred CCCCcHHHHHHHHhhcccCCEEEEEEcceeecCCC-ccccccceeEEEcCEEEEcCC
Confidence 99999998 55554 34689999999999975 33 78899999999999764
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.9e-13 Score=136.37 Aligned_cols=102 Identities=19% Similarity=0.321 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhC---CcEEee--cceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-Ccc
Q 011197 152 NALAYATHKFFQEN---GFIWIS--SPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKP 225 (491)
Q Consensus 152 s~i~~~iR~ff~~~---~F~EV~--TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~ 225 (491)
+.++..|+++|.+. ||.+++ .|+.+.. +....++.|++||+++..| .|| +..
T Consensus 71 ~~~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~--------~NFD~L~~P~dHPaR~~~D--------------Tfy~~~~ 128 (402)
T PLN02788 71 GILKNAIYDYFDENYSNKFKKFDDLSPIVSTK--------QNFDDVLVPPDHVSRSYND--------------TYYVDAQ 128 (402)
T ss_pred HHHHHHHHHHHhhcccCCcEEecCCCCccchh--------hhhhhhCCCCCCCccCccc--------------eEEecCC
Confidence 34677888899887 999998 5554432 2236678888888875332 344 455
Q ss_pred cccccchhhHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEecc
Q 011197 226 AFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (491)
Q Consensus 226 ~~L~~Spql~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (491)
.-|++..--+. ++|..+-.|++.+|+|||+|.. +.+|.|+|+|+|.-+.+
T Consensus 129 ~lLRTHTSa~q~~~l~~~~~~~~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~ 179 (402)
T PLN02788 129 TVLRCHTSAHQAELLRAGHTHFLVTGDVYRRDSI-DATHYPVFHQMEGVRVF 179 (402)
T ss_pred ccccCCCcHHHHHHHHhCCCcEEEEeeEeecCCC-CcccCccceeEEEEEEe
Confidence 56766665565 6776777899999999999998 69999999999998876
|
|
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.9e-11 Score=129.98 Aligned_cols=141 Identities=16% Similarity=0.241 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCC----------C-----
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI----------P----- 208 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~----------~----- 208 (491)
...-...+..+++.+|+.|...||.||+||++.+ .++....+..||+|||++..|.. |
T Consensus 228 ~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~-------~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~ 300 (489)
T PRK04172 228 YPGKKHPYREFIDEVRDILVEMGFEEMKGPLVET-------EFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVE 300 (489)
T ss_pred CCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeee-------cCcccccccCCCCCCCCCccceEEECCcccccCcHHHHH
Confidence 3445667889999999999999999999999987 34455677888999998732220 0
Q ss_pred ---CCCCCCcCcccccc--------CcccccccchhhHH-HHHh-ccC--CceEEEccccccCCCCCCcccccccceeeE
Q 011197 209 ---KTKDGLIDWSQDFF--------EKPAFLTVSGQLNA-ETYA-TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPE 273 (491)
Q Consensus 209 ---~~~~~~~~~~~~~f--------~~~~~L~~Spql~l-ql~~-~g~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e 273 (491)
.+|+.+...+...| ++..-|+.+.--.. ++++ .+. -|+|+||+|||+|.. +..|++||+|+++.
T Consensus 301 ~v~~~he~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~ 379 (489)
T PRK04172 301 RVKEVHEHGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGI 379 (489)
T ss_pred HHHHHHhccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEE
Confidence 11110000000111 23345555444343 4444 233 389999999999987 57889999999999
Q ss_pred eccC--CHHHHHHHHHHHHHH
Q 011197 274 LAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 274 ~~~~--~~~~lm~~~e~li~~ 292 (491)
+... ++.+++.++++++..
T Consensus 380 i~G~~~~f~elkg~l~~ll~~ 400 (489)
T PRK04172 380 VMGEDVSFRDLLGILKEFYKR 400 (489)
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 9976 456666666665544
|
|
| >TIGR00669 asnA aspartate--ammonia ligase, AsnA-type | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.1e-11 Score=115.58 Aligned_cols=278 Identities=16% Similarity=0.127 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHhh-----CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 148 ARVRNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~-----~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
++.....|..+++||.. .+.+.|..|+++....+=+-++--+.+.- .+...-.
T Consensus 5 ~~~tq~aI~~iK~~F~~~L~~~L~L~rVsAPLfv~~~sGlnD~LnG~ErpV----------------------~f~~k~~ 62 (330)
T TIGR00669 5 FILQQQQISFVKSTFTQQLEERLGLIEVQGPILSQVGDGTQDNLSGREKAV----------------------QVKVKAI 62 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCeEEeccceEEcCCCCCcCCCCCeecce----------------------EeecCCC
Confidence 44555667777777754 69999999999986543111110011000 0000000
Q ss_pred -CcccccccchhhHHHHHhc--cC---CceEEEcccccc-CCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHH
Q 011197 223 -EKPAFLTVSGQLNAETYAT--AL---SNVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSC 295 (491)
Q Consensus 223 -~~~~~L~~Spql~lql~~~--g~---~rvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~ 295 (491)
+..+-.-+|---|+++... +| +-+|+=..+-|. |+.-+..|.-==-|-|||.....-+--++...+.++.
T Consensus 63 ~~~~~evVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~De~~ldn~HS~yVDQWDWEkvI~~~~R~~~~Lk~tV~~--- 139 (330)
T TIGR00669 63 PDAQFEVVHSLAKWKRHTLARHDFSAGEGLFVHMKALRPDEDRLDPLHSVYVDQWDWEKVMPDGERNFAYLKSTVEA--- 139 (330)
T ss_pred CCceeEEehhhHHHHHHHHHhcCCCCCceeeeccccccCCccccCccceeeeccccHHHhcCcccccHHHHHHHHHH---
Confidence 2333344555566675433 55 458997888886 5523789976666777777755333333333333333
Q ss_pred HHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccc-hHHhhhhccccc
Q 011197 296 MQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAF 374 (491)
Q Consensus 296 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~~~~~ 374 (491)
+.+.+..... .+ ...+ .+...+. ..|++-...++..... +++ .+-|..++..+
T Consensus 140 -Iy~~ik~te~-~~--~~~y-------~l~~~Lp---~~I~FitsqeL~~~YP-----------~lt~keRE~~i~ke~- 193 (330)
T TIGR00669 140 -IYAAIRATEA-AV--SERF-------GLAPFLP---DQIHFVHSEELVSRYP-----------DLDSKGRERAICKEL- 193 (330)
T ss_pred -HHHHHHHHHH-HH--HHhc-------CccccCC---CceEEecHHHHHHHCC-----------CCCHHHHHHHHHHHh-
Confidence 4333321100 00 0000 0111111 1233332222222210 122 22333344333
Q ss_pred cCccEEEEeCCCCCc---------cccc---ccCCCCCceEEEEEEe------CCeeEeechhhhcccHHHHHHHHHHcC
Q 011197 375 GGCPVIVSDYPKEIK---------AFYM---RQNDDGRTVAAMDMLV------PRIGELIGGSQREERLEYLEGRLDELK 436 (491)
Q Consensus 375 ~~~p~~i~~~P~~~~---------pf~~---~~~~~~~~~~~fdl~~------~G~gEi~~G~~r~~~~~~~~~~~~~~g 436 (491)
..|||+.--..++ |=|. ...+++...-+=|+++ ..+ ||.+-+.|- +.+.+.++++..|
T Consensus 194 --gaVFi~~IG~~L~~G~~Hd~RApDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~-ElSSMGIRV-d~~~L~~Qlk~~g 269 (330)
T TIGR00669 194 --GAVFLIGIGGKLSDGKPHDVRAPDYDDWTTPSELGYKGLNGDILVWNPVLGDAF-ELSSMGIRV-DEDALRHQLALTG 269 (330)
T ss_pred --CcEEEEeccCcCCCCCcCCCCCCCcccccccccccccCcCceEEEEchhcCcee-eeecceeEE-CHHHHHHHHHHcC
Confidence 3566655332221 1110 0000111113445544 257 999999998 6777788888888
Q ss_pred -CCcccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 437 -LNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 437 -~~~~~~~~yl~~~~~G-~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
.+...+.||+++ ..| +|||+|+|||+|||+|+|+|..+|.+|++
T Consensus 270 ~~dr~~l~~h~el-l~g~LP~TiGGGIGqsRL~MfLL~k~HIgEVQ~ 315 (330)
T TIGR00669 270 DEDRLELEWHQDL-LNGELPQTIGGGIGQSRLAMLLLQLKHIGEVQA 315 (330)
T ss_pred CCccccCHHHHHH-HcCCCCccccccccHHHHHHHHhccccccceee
Confidence 577889999998 667 89999999999999999999999999976
|
The fact that the protein from the H. influenzae is more than 70 % identical to that from the spirochete Treponema pallidum, but less than 65 % identical to that from the closely related E. coli, strongly suggests lateral transfer. |
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-11 Score=128.14 Aligned_cols=114 Identities=15% Similarity=0.224 Sum_probs=75.5
Q ss_pred cCccccCCChHHHHHHHHHHHHHHHHHHHHhhC--------CcEEeec--ceeeccCCCCCCCceeeeecCCCcccccCC
Q 011197 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQEN--------GFIWISS--PIITASDCEGAGEQFCVTTLIPSSREAAES 202 (491)
Q Consensus 133 ~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~--------~F~EV~T--PiL~~~~~eg~~~~F~vt~~~~~~~~~~~~ 202 (491)
++.++...+|.. .+...|.++|.+. ||--++. |+.+.. ..| ..++.|.+|++++
T Consensus 34 r~~~~~~~HPl~--------~~~~~I~~~F~~~~~~~~~~~gf~v~~~~~Pvvt~~------~NF--D~Ln~P~dHPaR~ 97 (460)
T TIGR00469 34 ANKHLKEDHPLG--------IIRDLIEKKFNGADNNQRGNPLFKIFDNFKPVVTTM------ENF--DNLGFPADHPGRQ 97 (460)
T ss_pred cCccCCCCCcHH--------HHHHHHHHHHHhhhcccccCCCeEEeeCCCCccchh------hhh--hhcCCCCCCcccC
Confidence 445555555532 3555666777766 7765555 743332 223 5677777887774
Q ss_pred CCCCCCCCCCCCcCcccccc-CcccccccchhhHH-HHHhccCC-------ceEEEccccccCCCCCCcccccccceeeE
Q 011197 203 PVDAIPKTKDGLIDWSQDFF-EKPAFLTVSGQLNA-ETYATALS-------NVYTFGPTFRAENSNTSRHLAEFWMIEPE 273 (491)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~f-~~~~~L~~Spql~l-ql~~~g~~-------rvfeI~~~FR~E~~~t~rHl~EFtmlE~e 273 (491)
..| .|| +...-|++..--+. ++|-.+.+ ++...|.|||++.+ +.+|.|.|+|+|.-
T Consensus 98 ~~D--------------T~Yi~~~~lLRTHTSa~q~~~~~~~~~~~~~~~~~~i~~G~VYRrD~i-DatH~p~FHQ~EG~ 162 (460)
T TIGR00469 98 KSD--------------CYYINEQHLLRAHTSAHELECFQGGLDDSDNIKSGFLISADVYRRDEI-DKTHYPVFHQADGA 162 (460)
T ss_pred ccc--------------ceEecCCceeCCCCcHHHHHHHHhccccCCCcceeeEeecceeeCCCC-ccccCccceeeEEE
Confidence 332 344 56666776666665 66666553 38899999999998 68999999999977
Q ss_pred eccC
Q 011197 274 LAFA 277 (491)
Q Consensus 274 ~~~~ 277 (491)
+.+.
T Consensus 163 ~v~~ 166 (460)
T TIGR00469 163 AIRK 166 (460)
T ss_pred EEec
Confidence 7665
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.9e-11 Score=122.86 Aligned_cols=120 Identities=17% Similarity=0.228 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-Ccccccc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKPAFLT 229 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~L~ 229 (491)
...+...+|++|...||.|+.||.+++..- .| ...+.+.+|++++..+ .++ .....|+
T Consensus 74 ~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~-----~f--d~l~~~~~hpar~~~d--------------~~~l~d~~vLR 132 (294)
T TIGR00468 74 LTRVIDEIRDIFLGLGFTEEKGPEVETDFW-----NF--DALNIPQDHPARDMQD--------------TFYIKDRLLLR 132 (294)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceeccHH-----HH--HHhCCCCCCcchhhcc--------------ceeecCCccee
Confidence 346777899999999999999999987410 11 1222233444432100 011 1233465
Q ss_pred cchhhHH-HHHhccC---CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 230 VSGQLNA-ETYATAL---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 230 ~Spql~l-ql~~~g~---~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
+|----+ +.+.... -|+|+||+|||++.. +.+|+|||+|+++-+... |+.++...+|.++..
T Consensus 133 tsl~p~ll~~l~~N~~~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~ 200 (294)
T TIGR00468 133 THTTAVQLRTMEENEKPPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKK 200 (294)
T ss_pred cccHHHHHHHHHhcCCCCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5544444 5555544 489999999999876 579999999999987643 677777777776655
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.3e-08 Score=95.07 Aligned_cols=101 Identities=19% Similarity=0.257 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC-------CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 148 ARVRNALAYATHKFFQENGFIWISSPIITASDCE-------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e-------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
.+.|..+.+.+++.|.+.||.||.||++.....- ...+.|.+...+
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~--------------------------- 54 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKG--------------------------- 54 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCC---------------------------
Confidence 3578899999999999999999999999985431 122345442111
Q ss_pred ccCcccccccchhhHH-HHHhc------cCCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 221 FFEKPAFLTVSGQLNA-ETYAT------ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 221 ~f~~~~~L~~Spql~l-ql~~~------g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+--..... ++++. .--|+|++|+|||+|.. ...|.-||+|+++|.-..+
T Consensus 55 --g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 55 --GRDLALRPDLTAPVARAVAENLLSLPLPLKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred --CCEEEeCCCCcHHHHHHHHhcCccCCCCeEEEEEcCEEecCCC-CCCCccceEEeceeeeCCC
Confidence 23333332222222 33332 22489999999999987 4668899999999987664
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=98.90 E-value=2e-08 Score=79.43 Aligned_cols=74 Identities=24% Similarity=0.448 Sum_probs=61.0
Q ss_pred EEEEEEEeee-ecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEE
Q 011197 32 IVVAGWVRTL-RAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 32 V~v~G~V~~~-R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (491)
|+|.|||.++ |..+++.|+.|+|++| .+|+++..+. ....... |+.|++|.|+|.+...+.+ +++|.+++++
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg--~i~~~~~~~~-~~~~~~~--l~~g~~v~v~G~v~~~~~~--~~~l~~~~i~ 73 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTG--SIQVVFFNEE-YERFREK--LKEGDIVRVRGKVKRYNGG--ELELIVPKIE 73 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETHH-HHHHHHT--S-TTSEEEEEEEEEEETTS--SEEEEEEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCc--cEEEEEccHH-hhHHhhc--CCCCeEEEEEEEEEEECCc--cEEEEECEEE
Confidence 7899999999 6679999999999995 5999998721 1223445 9999999999999998664 6999999998
Q ss_pred EE
Q 011197 111 LV 112 (491)
Q Consensus 111 il 112 (491)
+|
T Consensus 74 ~l 75 (75)
T PF01336_consen 74 IL 75 (75)
T ss_dssp EE
T ss_pred EC
Confidence 76
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.9e-08 Score=102.01 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=43.0
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|++|+|||+|...+.+|+++|+|+|.-.+.. ++.|++..++.|+++
T Consensus 208 iRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~ 258 (533)
T TIGR00470 208 LKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQ 258 (533)
T ss_pred eEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 5899999999999643679999999999988866 489999999888887
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.9e-07 Score=96.77 Aligned_cols=104 Identities=18% Similarity=0.225 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CC----CCCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.+.+..+...+++.|.++||.||.||++...+. +. ..+.|.+...+
T Consensus 11 p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--------------------- 69 (397)
T TIGR00442 11 PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKG--------------------- 69 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCC---------------------
Confidence 346788899999999999999999999999976431 10 01334332111
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+-|+.-.-... ++++.. --|+|++|+|||+|... ..|.-||+|+++|....+
T Consensus 70 --------g~~l~LRpD~T~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~ref~Q~g~eiig~~ 131 (397)
T TIGR00442 70 --------GRSLTLRPEGTAPVARAVIENKLLLPKPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSD 131 (397)
T ss_pred --------CCEEeecCCCcHHHHHHHHhcccccCCCeEEEEEcCeecCCCCC-CCcccceEEcCeeeeCCC
Confidence 22223322211111 333221 14899999999999874 456699999999987665
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.3e-08 Score=101.18 Aligned_cols=137 Identities=18% Similarity=0.193 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCC-------------------
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPV------------------- 204 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~------------------- 204 (491)
..-.+++|+ .+|++|.+.||.|+.|.-.+.+.-- ....+-.||+|||++.-
T Consensus 211 lHPLmKvR~----eFRqiF~emGFsEMptn~yVEssFW------NFDALfqPQqHpARDahDTFfl~~Pa~s~~~p~dY~ 280 (483)
T KOG2784|consen 211 LHPLMKVRE----EFRQIFFEMGFSEMPTNNYVESSFW------NFDALFQPQQHPARDAHDTFFLKDPATSTKFPEDYL 280 (483)
T ss_pred cchHHHHHH----HHHHHHHHccccccccccchhhccc------cchhhcCcccCCccccccceEecChhhcccCCHHHH
Confidence 344677665 5799999999999999888876543 34455567899988721
Q ss_pred CCCCCCCCCCcCccccccCcccc--------c-----ccchhhHHHHHhccC--CceEEEccccccCCCCCCcccccccc
Q 011197 205 DAIPKTKDGLIDWSQDFFEKPAF--------L-----TVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWM 269 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~f~~~~~--------L-----~~Spql~lql~~~g~--~rvfeI~~~FR~E~~~t~rHl~EFtm 269 (491)
+++..+++.+.-.+ .-|+.++- | ++|....-+|.-.|+ .|+|.|-++||||.. +.+||.||+|
T Consensus 281 ~rVk~vH~~G~ygs-~GY~y~wk~eEaqKnvLRTHTTavSArmLy~LAk~~f~p~K~FSIDrVFRNEtv-DaTHLAEFHQ 358 (483)
T KOG2784|consen 281 ERVKAVHEQGGYGS-IGYRYNWKLEEAQKNVLRTHTTAVSARMLYRLAKKGFKPAKYFSIDRVFRNETV-DATHLAEFHQ 358 (483)
T ss_pred HHHHHHHhcCCcCC-cccCCCCCHHHHHHHHHhhhhHHhhHHHHHHHHhCCCCcccccchhhhhhcccc-chHHHHHHhh
Confidence 11122332211011 11222222 2 334433335555666 589999999999999 6999999999
Q ss_pred eeeEeccC--CHHHHHHHHHHHHHH
Q 011197 270 IEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 270 lE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
+|.-.+.. ++.++|.+.++++..
T Consensus 359 VEGviad~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784|consen 359 VEGVIADKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred hceeeecCCCcHHHHHHHHHHHHhc
Confidence 99999866 589999988887766
|
|
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.8e-07 Score=88.94 Aligned_cols=119 Identities=13% Similarity=0.207 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc--cccccc
Q 011197 153 ALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK--PAFLTV 230 (491)
Q Consensus 153 ~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~--~~~L~~ 230 (491)
++.+.+|++|...||.||.|+.+++....- +.+..... ++.. ... .. -.... -.+|++
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~--~~~~~~~~-----~~~~----~~~----~~-----v~l~NP~~~~LR~ 64 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNF--DALNIPQD-----HPAR----DMQ----DT-----FYINDPARLLLRT 64 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhh--hhcCCCCC-----Cccc----ccC----ce-----EEECCCceEEEec
Confidence 467789999999999999999998762110 11111000 0000 000 00 00011 135665
Q ss_pred chhhHH-HHHhc--cCCceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 231 SGQLNA-ETYAT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 231 Spql~l-ql~~~--g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
|-=-.+ +.++. .--|+||||+|||+++. +.+|+|||+||++.+++. |+.+++..+|.++..
T Consensus 65 sLlp~LL~~l~~N~~~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~ 130 (218)
T cd00496 65 HTSAVQARALAKLKPPIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKE 130 (218)
T ss_pred cCcHHHHHHHHhcCCCeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 554444 55554 55699999999999876 468899999999999988 899999999998776
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=81.37 Aligned_cols=113 Identities=25% Similarity=0.311 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHh-hCCcEEeecceeeccCCC---CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 150 VRNALAYATHKFFQ-ENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 150 ~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
++++|++.+++.+. +.||.||.||+|.+...- |. .+.|.++..+
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~--------------------------- 53 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRG--------------------------- 53 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETT---------------------------
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecc---------------------------
Confidence 47899999999999 999999999999986431 11 1233332110
Q ss_pred ccCcccccccchhhHH-HHHhcc-------C-CceEEEccccccCC--CCCCcccccccceeeEeccCCHHHHHHHHHHH
Q 011197 221 FFEKPAFLTVSGQLNA-ETYATA-------L-SNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAY 289 (491)
Q Consensus 221 ~f~~~~~L~~Spql~l-ql~~~g-------~-~rvfeI~~~FR~E~--~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~l 289 (491)
+...+|+-+.+... .++... + =|+|++|+|||+|. ..+-..+-||+|.|++....+ ++..+..+++
T Consensus 54 --~~~~~L~pt~~~~~~~~~~~~~~~~~~~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~-~~~~~~~~~~ 130 (173)
T PF00587_consen 54 --DEEYCLRPTSEPGIYSLFKNEIRSSYRDLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP-EQSEEEFEEL 130 (173)
T ss_dssp --TEEEEE-SSSHHHHHHHHHHHEEBHGGGSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS-HHHHHHHHHH
T ss_pred --cccEEeccccccceeeeecceeeeccccCCeEEeecccccccccccccccceeeEeeeeceEEEeCC-cccHHHHHHH
Confidence 13356766666555 333221 2 27999999999993 223567789999999998777 8888888887
Q ss_pred HHH
Q 011197 290 LQL 292 (491)
Q Consensus 290 i~~ 292 (491)
+..
T Consensus 131 ~~~ 133 (173)
T PF00587_consen 131 LEL 133 (173)
T ss_dssp HHH
T ss_pred HHH
Confidence 776
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.6e-05 Score=88.43 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC------CCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
.+-.-...|..+...+++.|...||.||+||++.... ++...+.|.+...+
T Consensus 336 ~lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~g----------------------- 392 (763)
T PLN02972 336 FAKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQG----------------------- 392 (763)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCC-----------------------
Confidence 4556778899999999999999999999999997532 12222344432111
Q ss_pred ccccccCcccccccchhhHH-HHHhcc---CCceEEEccccccCCCCCCcccccccceeeEeccC-C----HHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D----LKDDMACAT 287 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g---~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~----~~~lm~~~e 287 (491)
|+.+-|+----... |+++.. --|.|+||+|||.|... .-+.-||+|+.+|.... + --|++.++-
T Consensus 393 ------Gr~LaLRPDlTvPiAR~vA~n~~~p~KrYyiG~VFR~e~pq-kGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~ 465 (763)
T PLN02972 393 ------GELCSLRYDLTVPFARYVAMNGITSFKRYQIAKVYRRDNPS-KGRYREFYQCDFDIAGVYEPMGPDFEIIKVLT 465 (763)
T ss_pred ------CCEEEeCCCChHHHHHHHHhCCCCcceEEEeccEEecCCCC-CCCCccceEEeEEEEcCCCcchhhHHHHHHHH
Confidence 22222221111112 444322 24788999999999763 34568999999999875 2 245666666
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+.++.
T Consensus 466 E~L~~ 470 (763)
T PLN02972 466 ELLDE 470 (763)
T ss_pred HHHHh
Confidence 65554
|
|
| >KOG2783 consensus Phenylalanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.6e-06 Score=87.37 Aligned_cols=57 Identities=16% Similarity=0.328 Sum_probs=48.0
Q ss_pred ccc-CcccccccchhhHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccC
Q 011197 220 DFF-EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (491)
Q Consensus 220 ~~f-~~~~~L~~Spql~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~ 277 (491)
.|| +...-|+...-.|. +++..|.+..-..|-+||...+ +++|.|=|.|+|.-..+.
T Consensus 126 tyy~n~~~~lr~htsahq~e~~~~~~~~flv~~DVyrrdei-dsthypvfhq~eg~~~~s 184 (436)
T KOG2783|consen 126 TYYVNHTHCLRAHTSAHQHELFQKGLDGFLVTGDVYRRDEI-DSTHYPVFHQMEGVRLWS 184 (436)
T ss_pred ceeecceeeehhcchhhHHHHHHhcccccceeeeeeeeccc-cccccceeccccceeEEe
Confidence 566 56666777777777 7888899999999999999999 589999999999988764
|
|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.25 E-value=1.6e-05 Score=83.66 Aligned_cols=114 Identities=24% Similarity=0.335 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CCC----CCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-...+..|...+|+-+...||.||.||++-...- |.. -+.+..+..+
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkg----------------------- 73 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKG----------------------- 73 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCC-----------------------
Confidence 5677889999999999999999999999877432 110 1112111100
Q ss_pred ccccccCcccccccchhhH--H-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDM 283 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~--l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm 283 (491)
++.+-|+ |++= . ++++.- --|.|+++||||.|.....|- =||+|+++|....+ --+++
T Consensus 74 ------gr~laLR--pe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi 144 (429)
T COG0124 74 ------GRSLALR--PELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVI 144 (429)
T ss_pred ------CCEEEec--ccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHH
Confidence 2322222 2221 2 333321 248999999999999877776 79999999998774 46777
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
.++-++++.
T Consensus 145 ~l~~~~l~~ 153 (429)
T COG0124 145 ALAVEILEA 153 (429)
T ss_pred HHHHHHHHH
Confidence 777776665
|
|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=6.6e-06 Score=81.58 Aligned_cols=121 Identities=19% Similarity=0.139 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
-.+++.+|++.+++.+.+.||.||.||.|...+. .| ..+.|.++....
T Consensus 31 g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~----------------------- 87 (261)
T cd00778 31 GYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGL----------------------- 87 (261)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCC-----------------------
Confidence 5778899999999999999999999999988542 11 123454432110
Q ss_pred cccccCcccccccchhhHH-HHHh----cc--C-CceEEEccccccCCCCC--CcccccccceeeEeccCCHHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYA----TA--L-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~----~g--~-~rvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
.=-+.+++|+-..+-.+ .+.+ +- + =|+|+|++|||+|...+ --=.-||+|.|.+..+.+.++..+..+
T Consensus 88 --~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~~e~~~~~~~ 165 (261)
T cd00778 88 --EELEEPLALRPTSETAIYPMFSKWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHATEEEAEEEVL 165 (261)
T ss_pred --cccCCcEEEcCCCCHHHHHHHHhhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCCHHHHHHHHH
Confidence 00012345555544433 2222 21 2 26899999999997631 112349999999999999999988888
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 166 ~~~~~ 170 (261)
T cd00778 166 QILDL 170 (261)
T ss_pred HHHHH
Confidence 87766
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=98.05 E-value=4.2e-05 Score=76.02 Aligned_cols=120 Identities=20% Similarity=0.180 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-C--CC------CCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-e--g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
-.+++.+|.+.+++.+.+.||.||.||.|..... . |. .+.|.++..+.
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~----------------------- 87 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGD----------------------- 87 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCC-----------------------
Confidence 4667889999999999999999999999988443 1 11 12343321110
Q ss_pred cccccCcccccccchhhHH-HHHhc------cCC-ceEEEccccccCCCCCCc---ccccccceeeEeccCCHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~------g~~-rvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
.+ -+.+++|+-..+-.+ .+... .+. |+|++++|||+|.. +.+ =.-||+|.|.+....+.++..+..
T Consensus 88 -~~-~~~~l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~~e~a~~e~ 164 (264)
T cd00772 88 -EE-LEEDFALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHADAEEADEEF 164 (264)
T ss_pred -Cc-cCceEEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCCHHHHHHHH
Confidence 00 013445555555433 22222 232 89999999999953 211 235999999998778888888888
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
+.++..
T Consensus 165 ~~~~~~ 170 (264)
T cd00772 165 LNMLSA 170 (264)
T ss_pred HHHHHH
Confidence 777755
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.4e-05 Score=75.80 Aligned_cols=118 Identities=19% Similarity=0.199 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 149 RVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
+++..|.+.+++.|.+.||.||.||.|..... .+.. +.|.++..+ + .
T Consensus 3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~---~ 57 (235)
T cd00670 3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKG----------------------R---E 57 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCc----------------------c---c
Confidence 56789999999999999999999999998652 1111 222221100 0 0
Q ss_pred ccCcccccccchhhHH-HHHhc------cC-CceEEEccccccCCCCC--CcccccccceeeEeccCCHHHHHHHHHHHH
Q 011197 221 FFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNT--SRHLAEFWMIEPELAFADLKDDMACATAYL 290 (491)
Q Consensus 221 ~f~~~~~L~~Spql~l-ql~~~------g~-~rvfeI~~~FR~E~~~t--~rHl~EFtmlE~e~~~~~~~~lm~~~e~li 290 (491)
--+..++|+-...... ++.+. .+ -|+|++|+|||+|.... -.-.-||+|.|++....+ ++..+..++++
T Consensus 58 ~~~~~~~LrP~~~~~i~~~~~~~~~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~-~~~~~~~~e~~ 136 (235)
T cd00670 58 LRDTDLVLRPAACEPIYQIFSGEILSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP-EEAEEERREWL 136 (235)
T ss_pred ccCCeEEEecCCCHHHHHHHhccCccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH-HHHHHHHHHHH
Confidence 0012334444443333 33322 12 37999999999997631 223469999999987544 23333334433
Q ss_pred HH
Q 011197 291 QL 292 (491)
Q Consensus 291 ~~ 292 (491)
..
T Consensus 137 ~~ 138 (235)
T cd00670 137 EL 138 (235)
T ss_pred HH
Confidence 33
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.96 E-value=4.5e-05 Score=80.57 Aligned_cols=116 Identities=18% Similarity=0.229 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CC----CCCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.+.+..+...+++.|.+.||.||.||++...+. +. ..+.|.+....
T Consensus 15 p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~--------------------- 73 (412)
T PRK00037 15 PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKG--------------------- 73 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCC---------------------
Confidence 346778889999999999999999999999976431 11 12334332110
Q ss_pred cCccccccCcccccccc--hhhHHHHHhc---cCCceEEEccccccCCCCCCcccccccceeeEeccCCH----HHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVS--GQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADL----KDDMAC 285 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~S--pql~lql~~~---g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~----~~lm~~ 285 (491)
++.+.|+.- +++. +.++. .--|+|++|+|||+|... ..|.-||+|+++|.-..+- .+++.+
T Consensus 74 --------g~~l~LRpd~T~~~a-r~~~~~~~~p~r~~~~g~vfR~e~~~-~gr~ref~Q~g~ei~g~~~~~~d~E~i~~ 143 (412)
T PRK00037 74 --------GRSLTLRPEGTAPVV-RAVIEHKLQPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSDSPLADAEVIAL 143 (412)
T ss_pred --------CCEEEecCCCcHHHH-HHHHhCCCCCeEEEEEcCccccCCCC-CCcccceEEcCeeeeCCCCcchhHHHHHH
Confidence 222222221 2222 33322 235899999999999874 4567899999999876542 444554
Q ss_pred HHHHHH
Q 011197 286 ATAYLQ 291 (491)
Q Consensus 286 ~e~li~ 291 (491)
+.++++
T Consensus 144 ~~~~l~ 149 (412)
T PRK00037 144 AADILK 149 (412)
T ss_pred HHHHHH
Confidence 444433
|
|
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.1e-05 Score=75.71 Aligned_cols=117 Identities=19% Similarity=0.137 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C-CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC--E-GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e-g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
-.+++.+|.+.+++.|.+.||.||.||+|..... . |. .+.|.++...
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~------------------------- 84 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRH------------------------- 84 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCC-------------------------
Confidence 5677889999999999999999999999987332 0 11 1344432110
Q ss_pred ccccCcccccccchhhHH-----HHHhc--cCC-ceEEEccccccC-CCCCC-cccccccceeeEeccCCHHHHHHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA-----ETYAT--ALS-NVYTFGPTFRAE-NSNTS-RHLAEFWMIEPELAFADLKDDMACATA 288 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l-----ql~~~--g~~-rvfeI~~~FR~E-~~~t~-rHl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (491)
+.+++|+...+-.+ +.+.+ .+. |+|++++|||+| ..... -=.-||+|.|.+....+-.+..+..++
T Consensus 85 ----~~~l~LrPt~e~~~t~~~~~~i~s~~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~~~~a~~~~~~ 160 (255)
T cd00779 85 ----GKEFLLGPTHEEVITDLVANEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDIDEESLEETYEK 160 (255)
T ss_pred ----CCeEEEecCCcHHHHHHHHhccccHhhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCCHHHHHHHHHH
Confidence 23445654433222 22222 232 899999999999 32111 023599999999988877677666666
Q ss_pred HHHH
Q 011197 289 YLQL 292 (491)
Q Consensus 289 li~~ 292 (491)
++..
T Consensus 161 i~~~ 164 (255)
T cd00779 161 MYQA 164 (255)
T ss_pred HHHH
Confidence 6554
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=97.86 E-value=7.4e-05 Score=81.90 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---C-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-.-.+++.+|.+.+|+.|.+.||.||.||+|.+..-. | +.+.|.++...
T Consensus 44 P~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~----------------------- 100 (568)
T TIGR00409 44 PLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRK----------------------- 100 (568)
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCC-----------------------
Confidence 3467789999999999999999999999999984321 1 12455543211
Q ss_pred ccccccCcccccccchh-----hHHHHHhcc--CC-ceEEEccccccC-CCCCC-cccccccceeeEeccCCHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQ-----LNAETYATA--LS-NVYTFGPTFRAE-NSNTS-RHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spq-----l~lql~~~g--~~-rvfeI~~~FR~E-~~~t~-rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
+..++|+-..| ++.+.+.+. +. |+|||++|||+| ..+.. -=.-||+|.|.|....+..+.....
T Consensus 101 ------~~~l~LrPT~Ee~~t~~~~~~i~syr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~~~~a~~e~ 174 (568)
T TIGR00409 101 ------GREFVLGPTHEEVITDLARNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSDEESLDATY 174 (568)
T ss_pred ------CCEEEEcCCCcHHHHHHHHHHHhhccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCChHHHHHHH
Confidence 23445554322 222233332 33 899999999999 32211 0125999999999888766666666
Q ss_pred HHHH
Q 011197 287 TAYL 290 (491)
Q Consensus 287 e~li 290 (491)
+.++
T Consensus 175 ~~~~ 178 (568)
T TIGR00409 175 QKMY 178 (568)
T ss_pred HHHH
Confidence 6554
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00019 Score=78.91 Aligned_cols=117 Identities=16% Similarity=0.090 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--CC------CCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--eg------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-.-.+++.+|.+.+|+.|.+.||.||.||+|.+..- ++ +.+.|.++...
T Consensus 44 P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~----------------------- 100 (565)
T PRK09194 44 PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRH----------------------- 100 (565)
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCC-----------------------
Confidence 346778999999999999999999999999996432 11 12455442210
Q ss_pred ccccccCcccccccchhhHH-HHHh----cc--C-CceEEEccccccCC-CCCC-cccccccceeeEeccCCHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYA----TA--L-SNVYTFGPTFRAEN-SNTS-RHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~----~g--~-~rvfeI~~~FR~E~-~~t~-rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
+++++|+-..+-.. .++. +. + -|+|||++|||.|. .... -=.-||+|.|.|....+-.+.....
T Consensus 101 ------~~~l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~~~~a~~~~ 174 (565)
T PRK09194 101 ------GRDFVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHADEESLDETY 174 (565)
T ss_pred ------CCEEEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCChHHHHHHH
Confidence 33445554333222 2222 11 2 28999999999993 2111 0135999999999877665555555
Q ss_pred HHHH
Q 011197 287 TAYL 290 (491)
Q Consensus 287 e~li 290 (491)
++++
T Consensus 175 ~~~~ 178 (565)
T PRK09194 175 DAMY 178 (565)
T ss_pred HHHH
Confidence 5555
|
|
| >COG2502 AsnA Asparagine synthetase A [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.002 Score=61.94 Aligned_cols=69 Identities=20% Similarity=0.128 Sum_probs=51.1
Q ss_pred CeeEeechhhhcccHHHHHHHHHHcCCC-cccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 411 RIGELIGGSQREERLEYLEGRLDELKLN-RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 411 G~gEi~~G~~r~~~~~~~~~~~~~~g~~-~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
++ ||.+-+.|. +.+.+.+++.-.|.. ...++|-=..+.--+|.+-|-|||=-||+|+|+..++|-+|..
T Consensus 246 af-ElSSMGIRV-de~~l~~Ql~ltgdeDrl~~~wHq~llng~lP~TIGGGIGQSRl~M~lL~k~HIGeVQ~ 315 (330)
T COG2502 246 AF-ELSSMGIRV-DEDALKRQLALTGDEDRLELEWHQMLLNGELPQTIGGGIGQSRLCMLLLQKKHIGEVQA 315 (330)
T ss_pred hh-eeecceeEe-cHHHHHHHHhccCchhhhcCHHHHHHHcCCCCccccCcccHHHHHHHHhcccccceeee
Confidence 56 888878776 556666666554432 2234655555555579999999999999999999999999965
|
|
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00018 Score=72.81 Aligned_cols=115 Identities=17% Similarity=0.183 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
-.+++..|.+.+++.+.+.||.||.||+|.....- |. .+.|.++. +
T Consensus 29 g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~---------------------~----- 82 (298)
T cd00771 29 GAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEE---------------------E----- 82 (298)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEecc---------------------C-----
Confidence 56778899999999999999999999999875421 11 12333310 0
Q ss_pred ccccCcccccccchhhHH-HHHhc------cCC-ceEEEccccccCCCCCCc---ccccccceeeEeccCCHHHHHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA-ETYAT------ALS-NVYTFGPTFRAENSNTSR---HLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l-ql~~~------g~~-rvfeI~~~FR~E~~~t~r---Hl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
+++++|+-...-.. .+.+. .+. |+|++|+|||+|...+.+ =.-||+|.|.+.. ..-++..+.++
T Consensus 83 ----~~~l~LRP~~~~~~~~~~~~~~~s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~-~~~e~~~~e~~ 157 (298)
T cd00771 83 ----DEEYGLKPMNCPGHCLIFKSKPRSYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIF-CTPDQIKEEIK 157 (298)
T ss_pred ----CceEEEcccCCHHHHHHHHhhccchhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEE-eCCcchHHHHH
Confidence 12334443333222 33222 222 899999999999763111 1259999999986 33344444444
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 158 e~l~~ 162 (298)
T cd00771 158 GVLDL 162 (298)
T ss_pred HHHHH
Confidence 44443
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00027 Score=70.84 Aligned_cols=109 Identities=16% Similarity=0.254 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
.-.+.+..+.+.+++.|...||-||+||++.....- ...+.|.+....
T Consensus 17 ~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~----------------------------- 67 (281)
T PRK12293 17 KSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEK----------------------------- 67 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCC-----------------------------
Confidence 356678899999999999999999999999864332 112344432110
Q ss_pred CcccccccchhhHH---HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC-HHHHHHHHHHHHHH
Q 011197 223 EKPAFLTVSGQLNA---ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQL 292 (491)
Q Consensus 223 ~~~~~L~~Spql~l---ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~ 292 (491)
++. |..-|++=. ++++.. --|.|++|+|||.|. .||+|+.+|.-+.+ ..+++.++-+.++.
T Consensus 68 g~~--l~LRpD~T~~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~ 138 (281)
T PRK12293 68 NHQ--ISLRADSTLDVVRIVTKRLGRSTEHKKWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEE 138 (281)
T ss_pred CCE--EEECCcCCHHHHHHHHHhcccCCCceeEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHH
Confidence 222 222233221 333321 238999999999873 59999999998774 55666555554444
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0002 Score=75.75 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC-------CceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
....++..++++.+++.+.+.||.||.||.|..... ++.+ +.|.++
T Consensus 170 p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~-------------------------- 223 (418)
T TIGR00414 170 NDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE-------------------------- 223 (418)
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--------------------------
Confidence 457888999999999999999999999999998653 2221 122210
Q ss_pred ccccccCcccccccchhhHHH-HHhcc------C-CceEEEccccccCCCC------CCcccccccceeeEeccCCHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNAE-TYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~lq-l~~~g------~-~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~l 282 (491)
+...||.-..+..+- +...- + =|+|++++|||+|-.. +--=.-||+|.|. ..|.+-++.
T Consensus 224 ------~~~~~L~pTsE~~~~~~~~~~i~s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~~e~s 296 (418)
T TIGR00414 224 ------DTDLYLIPTAEVPLTNLHRNEILEEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCKPEES 296 (418)
T ss_pred ------CCCEEEEeCCcHHHHHHHhCcCCChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcCHHHH
Confidence 234567766666653 32221 2 3799999999999631 1112349999999 568888888
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+..++++..
T Consensus 297 ~~~~~~~~~~ 306 (418)
T TIGR00414 297 AEELEEMTSD 306 (418)
T ss_pred HHHHHHHHHH
Confidence 8877777766
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00017 Score=76.51 Aligned_cols=117 Identities=20% Similarity=0.327 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHHHh-hCCcEEeecceeeccCCC-CCC--CceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASDCE-GAG--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~~e-g~~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
....++..++++.+++.+. +.||.||.||.|...... +.+ .-|. .+
T Consensus 167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~------------------------------~~ 216 (425)
T PRK05431 167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFE------------------------------ED 216 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccch------------------------------hh
Confidence 3567788999999999998 999999999999985431 111 1111 01
Q ss_pred cc---CcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC------CCcccccccceeeEeccCCHHHHH
Q 011197 221 FF---EKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 221 ~f---~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~lm 283 (491)
.| +.+.||.-..|..+ -+.... + =|+|++++|||+|-.. +--=.-||+|.|.+ .|..-++..
T Consensus 217 ly~i~~~~~~L~pTsE~~l~~l~~~~~~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~~e~s~ 295 (425)
T PRK05431 217 LYKIEDDDLYLIPTAEVPLTNLHRDEILDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTKPEDSY 295 (425)
T ss_pred ceEecCCCEEEEeCCcHHHHHHHhcccCCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEECHHHHH
Confidence 11 34567777777666 343332 1 3799999999999641 10122499999999 678778888
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+..++++..
T Consensus 296 ~~~~~~l~~ 304 (425)
T PRK05431 296 AELEELTAN 304 (425)
T ss_pred HHHHHHHHH
Confidence 888887776
|
|
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00016 Score=71.49 Aligned_cols=98 Identities=27% Similarity=0.286 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHhhCC--cEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 147 VARVRNALAYATHKFFQENG--FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~--F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
-.+++.+|++.+|+.|...| |.||+||+|.+. +.|.+. ..+ .+ ++ +.
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~-~g~---------~d------~~---------~~ 79 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTS-IGP---------VE------SG---------GN 79 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheee-ecc---------cC------CC---------Cc
Confidence 57788999999999999885 999999999997 566542 110 00 00 12
Q ss_pred cccccc--chh---hHHHHHhcc---C-CceEEEccccccCCCCCC---cccccccceeeEecc
Q 011197 225 PAFLTV--SGQ---LNAETYATA---L-SNVYTFGPTFRAENSNTS---RHLAEFWMIEPELAF 276 (491)
Q Consensus 225 ~~~L~~--Spq---l~lql~~~g---~-~rvfeI~~~FR~E~~~t~---rHl~EFtmlE~e~~~ 276 (491)
..+|+- .|. .+++..... + =|+||||+|||+|.+ .. -=.-||||.|+|.-.
T Consensus 80 ~~~Lrp~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~-~~~gl~R~ReF~q~d~~~f~ 142 (254)
T cd00774 80 LGYLRPETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEIS-PRNGLFRVREFTQAEIEFFV 142 (254)
T ss_pred ccccCCcccchHHHHHHHHHHHhCCCCCchhhhhchhhccccC-cccceeeeccchhhheeeeE
Confidence 233332 221 223433322 2 279999999999975 22 234699999999854
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00026 Score=78.08 Aligned_cols=119 Identities=19% Similarity=0.210 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.-.+++..|.+.+++.+.+.||.||.||+|....- .|.. +.|.++...
T Consensus 201 ~~p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~--------------------- 259 (575)
T PRK12305 201 WHPKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEID--------------------- 259 (575)
T ss_pred EeccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccC---------------------
Confidence 34556788999999999999999999999999998542 1111 233221100
Q ss_pred cCccccccCcccccccc-hhhHHHHHhc------cCC-ceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHH
Q 011197 215 IDWSQDFFEKPAFLTVS-GQLNAETYAT------ALS-NVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~S-pql~lql~~~------g~~-rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (491)
++.+.|+-- ...+.++.+. .+. |.|++|+|||+|.+. .+| .-||+|.|++. |.+.+..
T Consensus 260 --------~~~~~LRP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~i-f~~~~~~ 329 (575)
T PRK12305 260 --------EEEYYLKPMNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSG-VLHGLTRVRGFTQDDAHI-FCTPDQI 329 (575)
T ss_pred --------CceEEEecCCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCC-CCcCcccccCeEEcceEE-EeCHHHH
Confidence 223333321 1222233222 232 899999999999763 211 25999999995 6676666
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+.+.+++..
T Consensus 330 ~~e~~e~i~l 339 (575)
T PRK12305 330 EDEILKVLDF 339 (575)
T ss_pred HHHHHHHHHH
Confidence 6666666665
|
|
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00026 Score=72.14 Aligned_cols=115 Identities=18% Similarity=0.123 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
.-.+.+..+...+++.|.+.||.||+||++..... +...+.|.+...+
T Consensus 6 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~-------------------------- 59 (314)
T TIGR00443 6 EEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSL-------------------------- 59 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCC--------------------------
Confidence 34677899999999999999999999999987432 1112344332111
Q ss_pred cccCccccccc--chhhHHHHHhc---c---CCceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHHHHHH
Q 011197 220 DFFEKPAFLTV--SGQLNAETYAT---A---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACAT 287 (491)
Q Consensus 220 ~~f~~~~~L~~--Spql~lql~~~---g---~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~~~e 287 (491)
|..+-|+- .++ +.+.++. + --|+|++|+|||.|.. ..-+.-||+|+.+|.-..+ --+++.++-
T Consensus 60 ---g~~l~LRpD~T~~-iaR~~~~~~~~~~~p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~ 134 (314)
T TIGR00443 60 ---GRVLGLRPDMTTP-IARAVSTRLRDRPLPLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPAADAEVIALLI 134 (314)
T ss_pred ---CCEEeecCcCcHH-HHHHHHHhcccCCCCeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCchhHHHHHHHHH
Confidence 12222221 122 2243332 2 2489999999999987 4566789999999987654 134444444
Q ss_pred HHHH
Q 011197 288 AYLQ 291 (491)
Q Consensus 288 ~li~ 291 (491)
+.+.
T Consensus 135 ~~l~ 138 (314)
T TIGR00443 135 EALK 138 (314)
T ss_pred HHHH
Confidence 4443
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00046 Score=75.94 Aligned_cols=117 Identities=18% Similarity=0.167 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
+-.-.+++..|.+.+|+.+.+.||.||.||++....-- |.. +.|.++..
T Consensus 196 ~p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~----------------------- 252 (563)
T TIGR00418 196 LPKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTEL----------------------- 252 (563)
T ss_pred eccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccC-----------------------
Confidence 34567788999999999999999999999999975321 111 12222110
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCC-----cccccccceeeEeccCCHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~~~~~~~~l 282 (491)
. ++.++|+--..-.. ++.+.. + -|+|++|+|||+|.. +. |- -||+|.|+|.-.. .++.
T Consensus 253 ----~--~~~~~LrP~~~~~i~~~~~~~~~s~~~lP~rl~~~g~~fR~E~~-g~~~Gl~R~-reF~q~~~~~~~~-~~~~ 323 (563)
T TIGR00418 253 ----D--NREFMLKPMNCPGHFLIFKSSLRSYRDLPLRIAELGYSHRYEQS-GELHGLMRV-RGFTQDDAHIFCT-EDQI 323 (563)
T ss_pred ----C--CceEEEecCCCHHHHHHHhCcCCChHHCCceeeEeccccCCCCC-cCCcCcccc-cceEEeeeEEEcC-HHHH
Confidence 0 24455555444443 443322 2 289999999999955 32 32 5999999998644 4555
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
....++++..
T Consensus 324 ~~e~~~~i~~ 333 (563)
T TIGR00418 324 KEEFKNQFRL 333 (563)
T ss_pred HHHHHHHHHH
Confidence 5554444444
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00036 Score=73.32 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
..-.+.|..+...+++.|.+.||.||.||++..... +...+.|.+...+.
T Consensus 14 p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~----------------------- 70 (391)
T PRK12292 14 PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLS----------------------- 70 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCC-----------------------
Confidence 345677899999999999999999999999975321 11123444322100
Q ss_pred cccccCcccccccchhhH--H-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMA 284 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~--l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~ 284 (491)
++.+-| =|++= . ++++.. --|+|++|+|||.|... .-+.-||+|+.+|.-..+ --|++.
T Consensus 71 -----g~~l~L--RpD~T~~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~-~gr~ref~Q~g~EiiG~~~~~aDaEvi~ 142 (391)
T PRK12292 71 -----GRTLGL--RPDMTAQIARIAATRLANRPGPLRLCYAGNVFRAQERG-LGRSREFLQSGVELIGDAGLEADAEVIL 142 (391)
T ss_pred -----CCEEEE--CCCCcHHHHHHHHHhccCCCCCeEEEeeceeeecCCCc-CCCccchhccceEEeCCCCchHHHHHHH
Confidence 122222 22222 1 333322 13899999999999773 445689999999998764 245566
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
++-+.++.
T Consensus 143 l~~~~l~~ 150 (391)
T PRK12292 143 LLLEALKA 150 (391)
T ss_pred HHHHHHHH
Confidence 65555544
|
|
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00031 Score=70.98 Aligned_cols=115 Identities=18% Similarity=0.297 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC-------CceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-...+++.+|++.+++.+.+.||.||.||.|..... ++.+ +.|.++
T Consensus 49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~-------------------------- 102 (297)
T cd00770 49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE-------------------------- 102 (297)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--------------------------
Confidence 346788899999999999999999999999998643 1111 122220
Q ss_pred ccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCC------CCCcccccccceeeEeccCCHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~~~~l 282 (491)
+.+++|.-..+..+ .+...- + =|+|++++|||+|.. .+---.-||+|.|.+ .|..-++.
T Consensus 103 ------~~~~~L~pt~e~~~~~l~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~e~~ 175 (297)
T cd00770 103 ------GEDLYLIATAEVPLAALHRDEILEEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKPEES 175 (297)
T ss_pred ------CCCEEEeecCCHHHHHHHhcccCCHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECchHH
Confidence 23456666666665 343322 2 379999999999965 121234699999997 46655777
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+..++++..
T Consensus 176 ~~~~~~~l~~ 185 (297)
T cd00770 176 WEELEELISN 185 (297)
T ss_pred HHHHHHHHHH
Confidence 6666666655
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00031 Score=75.63 Aligned_cols=121 Identities=18% Similarity=0.095 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-C-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
.-.+++..|.+.+++.|.+.||.||.||.|.+..- + + ..+.|.++..+.
T Consensus 42 ~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~---------------------- 99 (477)
T PRK08661 42 YGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGG---------------------- 99 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCC----------------------
Confidence 36788899999999999999999999999987532 1 1 124555543210
Q ss_pred ccccccCcccccccchhhHH-----HHHhcc--C-CceEEEccccccCCCCCC--cccccccceeeEeccCCHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-----ETYATA--L-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-----ql~~~g--~-~rvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
.=.+.+++|+-..+-.+ +.+.+. + =|+||+++|||+|.. ++ -=.-||+|.|.+..+.+.++..+.+
T Consensus 100 ---~~~~e~l~LrPtsE~~i~~~~~~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~~eea~~e~ 175 (477)
T PRK08661 100 ---EKLEEKLALRPTSETIIYPMYKKWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHATEEEAEEET 175 (477)
T ss_pred ---CccCceEEEecCCcHHHHHHHHhhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCCHHHHHHHH
Confidence 00134455655553333 222222 2 278999999999976 33 2346999999999999998888888
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
++++..
T Consensus 176 ~~~l~~ 181 (477)
T PRK08661 176 LEMLEI 181 (477)
T ss_pred HHHHHH
Confidence 877765
|
|
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00037 Score=77.86 Aligned_cols=115 Identities=16% Similarity=0.196 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF- 222 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f- 222 (491)
-.+++..|.+.+++.+.+.||.||.||+|....- .|..+-|.- .-|+
T Consensus 273 g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~-----------------------------emy~~ 323 (639)
T PRK12444 273 GQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKD-----------------------------NMYFS 323 (639)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhh-----------------------------hcCee
Confidence 4456777999999999999999999999998532 121111110 0011
Q ss_pred ---CcccccccchhhHH-HHHhccC-------CceEEEccccccCCCCC--C--cccccccceeeEeccCCHHHHHHHHH
Q 011197 223 ---EKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNT--S--RHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 223 ---~~~~~L~~Spql~l-ql~~~g~-------~rvfeI~~~FR~E~~~t--~--rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
++.++|+--.+-.. ++....+ -|+|++|+|||.|.+.+ . | .-||+|.|.+ .|++-++..+.++
T Consensus 324 d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R-~reF~q~d~~-~f~~~~~~~~e~~ 401 (639)
T PRK12444 324 EVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLR-VRTFCQDDAH-LFVTPDQIEDEIK 401 (639)
T ss_pred cCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcce-eeeeEEccEE-EECCHHHHHHHHH
Confidence 23344655555554 4443322 28999999999997632 1 2 2589999999 7888777777766
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 402 ~~~~~ 406 (639)
T PRK12444 402 SVMAQ 406 (639)
T ss_pred HHHHH
Confidence 66665
|
|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00043 Score=73.63 Aligned_cols=117 Identities=15% Similarity=0.195 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C--C-C-----CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G-A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e--g-~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-...|..+.+.+++.|...||-||.||++..... . | . .+.|.+...+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~---------------------- 73 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRS---------------------- 73 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCC----------------------
Confidence 35667899999999999999999999999988532 0 1 1 2344432110
Q ss_pred CccccccCcccccccchhhHH-HHHhc------cC-CceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~------g~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm 283 (491)
++.+.|+-=.-... ++++. .. -|.|++|+|||.|.....|- -||+|+++|.-..+ --+++
T Consensus 74 -------g~~l~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~Evi 145 (430)
T CHL00201 74 -------NRDITLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTEVI 145 (430)
T ss_pred -------CCEEEeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHHHH
Confidence 22222322111112 32221 12 38999999999998755554 69999999997664 12455
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
.++-+.++.
T Consensus 146 ~l~~~~l~~ 154 (430)
T CHL00201 146 HLAMQIFNE 154 (430)
T ss_pred HHHHHHHHH
Confidence 554444443
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00024 Score=76.33 Aligned_cols=121 Identities=16% Similarity=0.157 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CC------CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EG------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
-.+++..|...+++-+.+.||.||.||.|.+..- +| ..+.|.+++...
T Consensus 37 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~----------------------- 93 (472)
T TIGR00408 37 GFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGL----------------------- 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCC-----------------------
Confidence 4566899999999999999999999999987432 12 224565543221
Q ss_pred cccccCcccccccchhhHH-HHHhc----c--C-CceEEEccccccCCCCCC--cccccccceeeEeccCCHHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYAT----A--L-SNVYTFGPTFRAENSNTS--RHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~----g--~-~rvfeI~~~FR~E~~~t~--rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
+=.+.+++|+-..+-.+ .+... - + =|+||+++|||+|...+. -=.-||+|-|.+..|.+.++..+..+
T Consensus 94 --~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~~e~a~~e~~ 171 (472)
T TIGR00408 94 --SKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHATAEEAEEQVL 171 (472)
T ss_pred --CccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCCHHHHHHHHH
Confidence 00124455555555443 23222 1 2 278999999999976310 12359999999999999888888877
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 172 ~~l~~ 176 (472)
T TIGR00408 172 RALDI 176 (472)
T ss_pred HHHHH
Confidence 77765
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00055 Score=73.94 Aligned_cols=117 Identities=14% Similarity=0.141 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------C-CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC------E-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
+-.-.+.|..+...+++.|...||.||.||++..... + -..+.|.+...+
T Consensus 80 lp~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~----------------------- 136 (487)
T PLN02530 80 PPEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKG----------------------- 136 (487)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCC-----------------------
Confidence 3446778999999999999999999999999988432 1 111334332110
Q ss_pred ccccccCcccccccchhhH--H-HHHhcc-----C-CceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLN--A-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDM 283 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~--l-ql~~~g-----~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm 283 (491)
++.+-| -|++= . ++++.- + -|.|++|+|||.|..... +.-||+|+.+|.-..+ .-|++
T Consensus 137 ------g~~l~L--RpD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEvi 207 (487)
T PLN02530 137 ------GRRVAL--RPELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAELL 207 (487)
T ss_pred ------CCEEec--CCCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHHH
Confidence 232222 23332 2 443332 2 389999999999986434 4579999999997664 34555
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
.++.+.++.
T Consensus 208 ~l~~~~l~~ 216 (487)
T PLN02530 208 AAIVTFFKR 216 (487)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00062 Score=76.05 Aligned_cols=119 Identities=17% Similarity=0.178 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCC-----CCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.+-.-.+++..+.+.+++.|...||.||.||++....- .|. .+.|.+....
T Consensus 265 ~lp~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~--------------------- 323 (638)
T PRK00413 265 WHPKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESD--------------------- 323 (638)
T ss_pred EcccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCC---------------------
Confidence 34556788999999999999999999999999987542 121 1234332110
Q ss_pred cCccccccCcccccccchhhH-HHHHhc------cC-CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLN-AETYAT------AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~-lql~~~------g~-~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (491)
++.+.|+--..-. .++.+. .+ =|+|++|+|||+|.+. .+| .-||||.|++. |..-+..
T Consensus 324 --------~~~~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~-~~~Gl~R~reF~q~~~~~-~g~~~~~ 393 (638)
T PRK00413 324 --------GEEYALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSG-ALHGLMRVRGFTQDDAHI-FCTPEQI 393 (638)
T ss_pred --------CcEEEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCC-CCcCcceeeeeEEeeEEE-EcCHHHH
Confidence 2233333211111 233221 22 2899999999999773 211 24999999997 6554444
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+.+.+++..
T Consensus 394 ~~e~~eii~l 403 (638)
T PRK00413 394 EEEVKKVIDL 403 (638)
T ss_pred HHHHHHHHHH
Confidence 4444454444
|
|
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00076 Score=68.43 Aligned_cols=115 Identities=20% Similarity=0.280 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
..-.+.+..+.+.+++.|...||.+|+||++..... +...+.|.+...+
T Consensus 7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~------------------------- 61 (311)
T PF13393_consen 7 PEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRS------------------------- 61 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecC-------------------------
Confidence 345778899999999999999999999999987431 2222445442111
Q ss_pred ccccCcccccccchhhHH---HHHhc-----cCCceEEEccccccCCCCCCcccccccceeeEeccCC-HH---HHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA---ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LK---DDMACA 286 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l---ql~~~-----g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~---~lm~~~ 286 (491)
|..+-| -|.+=. ++++. -.-|+|++|++||.+... ..+.-||+|+.+|.-..+ .. +++.++
T Consensus 62 ----G~~l~L--R~D~T~~iaR~~a~~~~~~~~~r~~y~g~vfR~~~~~-~g~~re~~Q~g~Eiig~~~~~~daEvi~l~ 134 (311)
T PF13393_consen 62 ----GRVLAL--RPDLTVPIARYVARNLNLPRPKRYYYIGPVFRYERPG-KGRPREFYQCGFEIIGSSSLEADAEVIKLA 134 (311)
T ss_dssp ----SSEEEE---SSSHHHHHHHHHHCCGSSSSEEEEEEEEEEEEETTT-TTBESEEEEEEEEEESSSSHHHHHHHHHHH
T ss_pred ----CcEecc--CCCCcHHHHHHHHHhcCcCCCceEEEEcceeeccccC-CCCCceeEEEEEEEECCCCHHHHHHHHHHH
Confidence 222222 222222 43333 236799999999999763 456689999999998765 33 556666
Q ss_pred HHHHH
Q 011197 287 TAYLQ 291 (491)
Q Consensus 287 e~li~ 291 (491)
-+++.
T Consensus 135 ~e~l~ 139 (311)
T PF13393_consen 135 DEILD 139 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
... |
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00071 Score=71.81 Aligned_cols=117 Identities=18% Similarity=0.261 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C--CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
+-.-...+..+...+++.|...||.||.||+|..... . +. .+.|.++..+
T Consensus 14 ~p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~--------------------- 72 (423)
T PRK12420 14 LPEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQG--------------------- 72 (423)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCC---------------------
Confidence 3445677889999999999999999999999987531 0 11 1344442211
Q ss_pred cCccccccCcccccccchhhHH---HHHhc--c--CC-ceEEEccccccCCCCCCcccccccceeeEeccCC----HHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA---ETYAT--A--LS-NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDD 282 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l---ql~~~--g--~~-rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~l 282 (491)
|+. |..-|++=. ++++. . .. |.|++|+|||.|... .-+.-||+|+.+|.-..+ .-|+
T Consensus 73 --------g~~--l~LRpD~T~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~~-~gr~rE~~Q~g~EiiG~~~~~adaEv 141 (423)
T PRK12420 73 --------KRD--LALRYDLTIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPIK-QGRFREFIQCDVDIVGVESVMAEAEL 141 (423)
T ss_pred --------Cce--ecccccccHHHHHHHHhCcCCCCCeeEEEEcceECCCCCC-CCccceeEECCeeeECCCCCcccHHH
Confidence 222 222233222 33332 1 22 899999999999763 446789999999997653 3666
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
+.++-+.++.
T Consensus 142 i~la~~~l~~ 151 (423)
T PRK12420 142 MSMAFELFRR 151 (423)
T ss_pred HHHHHHHHHH
Confidence 7766665554
|
|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0006 Score=76.66 Aligned_cols=119 Identities=19% Similarity=0.174 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-C--CCC-----CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-e--g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.+-.-.+++..++..+|+.+.+.||.||.||.|....- . |.- +.|.++. +
T Consensus 316 ~lP~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~---------------------~- 373 (686)
T PLN02908 316 FLPHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEI---------------------E- 373 (686)
T ss_pred EechHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEec---------------------C-
Confidence 34567889999999999999999999999999998542 1 111 2232210 0
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC---CCcccccccceeeEeccCCHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~---t~rHl~EFtmlE~e~~~~~~~~lm 283 (491)
+..++|+--..-.. .+...- + =|+|++|+|||+|.+. +-.=.-||+|.|.+. |+..+++.
T Consensus 374 --------~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~~~q~~ 444 (686)
T PLN02908 374 --------KQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCREDQIK 444 (686)
T ss_pred --------CeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcCHHHHH
Confidence 23334443333333 222221 1 2799999999999762 211235899999998 88888999
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+++++..
T Consensus 445 ~e~~~~l~~ 453 (686)
T PLN02908 445 DEVKGVLDF 453 (686)
T ss_pred HHHHHHHHH
Confidence 888888876
|
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00079 Score=71.80 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
.-.+++.+|.+.+|+.+.+.||.||.||.|.+..- .|. .+.|.++...
T Consensus 45 ~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~------------------------ 100 (439)
T PRK12325 45 LGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRH------------------------ 100 (439)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCC------------------------
Confidence 35788999999999999999999999999997521 011 1344442110
Q ss_pred cccccCcccccccch-hhHHH----HHhc--cC-CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSG-QLNAE----TYAT--AL-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMAC 285 (491)
Q Consensus 218 ~~~~f~~~~~L~~Sp-ql~lq----l~~~--g~-~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm~~ 285 (491)
+.++.|+... +.+-. .+.+ .+ =|+|||+++||+|.. + +| .-||+|-|+|....+.+++.+.
T Consensus 101 -----~~~~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~-~-~~GL~R~reF~~~D~h~f~~~~~~a~~~ 173 (439)
T PRK12325 101 -----DREMLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIR-P-RFGVMRGREFLMKDAYSFDLDEEGARHS 173 (439)
T ss_pred -----CCEEEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCC-C-CCCccccceEeEeccEEEeCCHHHHHHH
Confidence 2333444321 22222 2222 12 479999999999954 2 32 4699999999988888888776
Q ss_pred HHHHHHH
Q 011197 286 ATAYLQL 292 (491)
Q Consensus 286 ~e~li~~ 292 (491)
.++++..
T Consensus 174 ~~~~~~~ 180 (439)
T PRK12325 174 YNRMFVA 180 (439)
T ss_pred HHHHHHH
Confidence 6666655
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00081 Score=73.28 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C-CCC-----CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--E-GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e-g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.-.++|..|...+|+.+.+.||.||.||.|....- . |.- +.|.++. +
T Consensus 163 ~lP~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~---------------------~- 220 (545)
T PRK14799 163 FHPKGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNM---------------------E- 220 (545)
T ss_pred EcChHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeec---------------------c-
Confidence 34567889999999999999999999999999876432 1 111 1121100 0
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCC---cccccccceeeEeccCCHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~---rHl~EFtmlE~e~~~~~~~~lm 283 (491)
+++.+|+--..-.. .+.... + =|+|++|+|||.|.+... .=.-||||.|+.. |++.+++.
T Consensus 221 --------~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~~~q~~ 291 (545)
T PRK14799 221 --------GDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLREDQLR 291 (545)
T ss_pred --------CceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeCHHHHH
Confidence 23334443333333 333222 2 279999999999987320 2335999999998 88888887
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+.+++..
T Consensus 292 ~E~~~~l~~ 300 (545)
T PRK14799 292 EEIKMLISK 300 (545)
T ss_pred HHHHHHHHH
Confidence 888777766
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0016 Score=68.39 Aligned_cols=116 Identities=12% Similarity=0.133 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
.-.+.+..+.+.+++.|...||.||+||++..... .+ ....|.+.....
T Consensus 19 ~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~------------------------ 74 (392)
T PRK12421 19 EEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLS------------------------ 74 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCC------------------------
Confidence 45677889999999999999999999999986432 11 113343322100
Q ss_pred ccccCcccccccchhhHH---HHHhc-----cCCceEEEccccccCCCCCCcccccccceeeEeccCC-H---HHHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA---ETYAT-----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACA 286 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l---ql~~~-----g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~~ 286 (491)
++. |+.=|++=. ++++. .--|.|++|+|||.+.....| .-||+|+.+|.-+.+ . -|++.++
T Consensus 75 ----g~~--l~LRpD~T~~iaR~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~l~ 147 (392)
T PRK12421 75 ----GRL--MGVRADITPQVARIDAHLLNREGVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIRLM 147 (392)
T ss_pred ----CcE--EEECCcCCHHHHHHHHhhcCCCCceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHHHH
Confidence 111 111222211 22221 135899999999998764344 379999999997764 2 3677777
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
-+.++.
T Consensus 148 ~e~l~~ 153 (392)
T PRK12421 148 LGLLRN 153 (392)
T ss_pred HHHHHH
Confidence 776655
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0012 Score=73.24 Aligned_cols=118 Identities=19% Similarity=0.161 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC-CCC-------CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e-g~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.-.+++.++++.+++...++||.||.||.|....-- +.+ +.|.+....
T Consensus 243 ~p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~---------------------- 300 (614)
T PLN02837 243 HPKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIE---------------------- 300 (614)
T ss_pred echHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCC----------------------
Confidence 45678899999999999999999999999999985431 111 222210000
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCc----ccccccceeeEeccCCHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm 283 (491)
+....|..+.+-.. .+...- + =|++|+++|||+|.+ +.+ =.-||+|.|.+. |+..++..
T Consensus 301 -------~~~y~l~p~~~p~~~~~~~~~~~SyrdLPlr~~~~~~~~R~E~~-g~~~GL~RvreF~~~e~h~-f~~~~q~~ 371 (614)
T PLN02837 301 -------DELYQLRPMNCPYHILVYKRKLHSYRDLPIRVAELGTVYRYELS-GSLHGLFRVRGFTQDDAHI-FCLEDQIK 371 (614)
T ss_pred -------CceEEECCCCcHHHHHHHhCccCChhHCCHhhEeecccccCCCC-CCCcCcccccceEECeEEE-EeCHHHHH
Confidence 11112222222221 121111 2 378999999999975 221 234899999996 99988888
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+++++..
T Consensus 372 ~e~~~~l~~ 380 (614)
T PLN02837 372 DEIRGVLDL 380 (614)
T ss_pred HHHHHHHHH
Confidence 888888776
|
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0017 Score=71.76 Aligned_cols=119 Identities=17% Similarity=0.214 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeecc---CCCCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITAS---DCEGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~---~~eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
+-.-.+++..|.+.+++.+.+.||.+|.||.+... ...|.. +.|.++..
T Consensus 223 ~P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~----------------------- 279 (613)
T PRK03991 223 YPKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSD----------------------- 279 (613)
T ss_pred EcHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCC-----------------------
Confidence 34678899999999999999999999999999543 212222 33433110
Q ss_pred CccccccCcccccccchhhHHH-----HHhcc--C-CceEEEcc-ccccCCCCC---CcccccccceeeEeccCCHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNAE-----TYATA--L-SNVYTFGP-TFRAENSNT---SRHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~lq-----l~~~g--~-~rvfeI~~-~FR~E~~~t---~rHl~EFtmlE~e~~~~~~~~lm 283 (491)
+.+++|+-..+..+= .+.+. + =|+||+++ |||+|.+.. -.=.-||||-|.+.--.+.++.+
T Consensus 280 -------~e~l~Lrp~~c~~~~~~~~~~~~SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~~eqa~ 352 (613)
T PRK03991 280 -------KKDLMLRFAACFGQFLMLKDMTISYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKDMEQAM 352 (613)
T ss_pred -------CceEEEecCCCHHHHHHHhCCcCchhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECCHHHHH
Confidence 123344433333221 11111 2 27899999 999997521 11345899999998666689999
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+..++++..
T Consensus 353 ~e~~~~l~~ 361 (613)
T PRK03991 353 EEFEKQYEM 361 (613)
T ss_pred HHHHHHHHH
Confidence 999888877
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0017 Score=69.61 Aligned_cols=45 Identities=27% Similarity=0.414 Sum_probs=36.2
Q ss_pred ceEEEccccccCCCCCCccc----ccccceeeEeccCCHHHHHHHHHHHHHH
Q 011197 245 NVYTFGPTFRAENSNTSRHL----AEFWMIEPELAFADLKDDMACATAYLQL 292 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl----~EFtmlE~e~~~~~~~~lm~~~e~li~~ 292 (491)
|+.|+|+|||+|-+ + +|- -||||.|.+ .|++-+++.+.+..++..
T Consensus 188 r~aq~g~~~RnE~s-~-~~gL~RvReF~q~e~h-iF~~peq~~~e~~~~l~~ 236 (456)
T PRK04173 188 GIAQIGKSFRNEIT-P-RNFIFRTREFEQMELE-FFVKPGTDNEWFAYWIEL 236 (456)
T ss_pred eeeEEchhHhCccC-C-CCCceeeceeeeeEEE-EEECcChHHHHHHHHHHH
Confidence 79999999999976 4 443 799999997 788887777766666655
|
|
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.007 Score=63.16 Aligned_cols=106 Identities=19% Similarity=0.168 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCC------CC-CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
..+.+.+++.|...||.||+||++..... +. ..+.|.+...+ ++
T Consensus 8 ~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~-----------------------------G~ 58 (373)
T PRK12295 8 AAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDEN-----------------------------GE 58 (373)
T ss_pred HHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCC-----------------------------CC
Confidence 47889999999999999999999987532 11 11244432211 12
Q ss_pred ccccccchhhHH---HHHhc----cCCceEEEccccccCCCCCCcccccccceeeEeccC-C----HHHHHHHHHHHHHH
Q 011197 225 PAFLTVSGQLNA---ETYAT----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-D----LKDDMACATAYLQL 292 (491)
Q Consensus 225 ~~~L~~Spql~l---ql~~~----g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~----~~~lm~~~e~li~~ 292 (491)
.+-| =|++=. ++.+. .--|+|++|+|||.|.. ..-||+|+.+|.-.. + --|++.++-+.++.
T Consensus 59 ~l~L--RpD~T~piaR~~~~~~~~~p~R~~Y~g~VfR~~~g----r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~ 132 (373)
T PRK12295 59 ELCL--RPDFTIPVCRRHIATAGGEPARYAYLGEVFRQRRD----RASEFLQAGIESFGRADPAAADAEVLALALEALAA 132 (373)
T ss_pred EEee--CCCCcHHHHHHHHHcCCCCCeEEEEEccEEECCCC----CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHH
Confidence 1112 222211 22222 12489999999999822 246999999999874 3 34777777776655
|
|
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.024 Score=44.90 Aligned_cols=73 Identities=19% Similarity=0.318 Sum_probs=54.9
Q ss_pred EEEEEEEeeeec-CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEE
Q 011197 32 IVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 32 V~v~G~V~~~R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ 110 (491)
+++.|-|.++|. .++++|+.|.|.++ .+.+++-++. ++... ..|..|+.|.|+|.+...+.. +++.|.++++.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~--~i~~~~f~~~--~~~~~-~~l~~g~~v~v~g~v~~~~~~-~~~~l~v~~i~ 75 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDA--SIRCVMWRSN--ARRLG-FPLEEGMEVLVRGKVSFYEPR-GGYQLIVEEIE 75 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCe--EEEEEEEcch--hhhCC-CCCCCCCEEEEEEEEEEECCC-CEEEEEEEEEE
Confidence 678999999985 45599999999985 5999888753 33322 249999999999999965421 35788887764
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0042 Score=66.00 Aligned_cols=121 Identities=15% Similarity=0.225 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC--CceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
...+++..+++.+++++.++||.||.||.|..... ++.+ .-|. +.+....+.
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~----------------e~my~i~~~--------- 226 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFD----------------EELYKVTGE--------- 226 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccch----------------hcCceecCC---------
Confidence 46889999999999999999999999999988543 2222 1111 000000000
Q ss_pred Ccccccccchhh-----HH-HHH-hccC-CceEEEccccccCCCC---CCc---ccccccceeeEeccCCHHH--HHHHH
Q 011197 223 EKPAFLTVSGQL-----NA-ETY-ATAL-SNVYTFGPTFRAENSN---TSR---HLAEFWMIEPELAFADLKD--DMACA 286 (491)
Q Consensus 223 ~~~~~L~~Spql-----~l-ql~-~~g~-~rvfeI~~~FR~E~~~---t~r---Hl~EFtmlE~e~~~~~~~~--lm~~~ 286 (491)
+...||.-..|. |. +.+ -..+ =|++++++|||+|-+. +.+ =.-+|+++|.+ +|..-++ ..+..
T Consensus 227 ~~~~yLi~TaE~~l~~~h~~~~~s~~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~pe~~~s~~~~ 305 (448)
T PLN02678 227 GDDKYLIATSEQPLCAYHRGDWIDPKELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITSPNGNESWEMH 305 (448)
T ss_pred CCceeeecccccccChHHhcccCCHHhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEECCCchhHHHHH
Confidence 112333332111 11 111 1112 3799999999999751 111 12389999994 4554444 66666
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
|+++..
T Consensus 306 e~~l~~ 311 (448)
T PLN02678 306 EEMLKN 311 (448)
T ss_pred HHHHHH
Confidence 666665
|
|
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.022 Score=45.10 Aligned_cols=73 Identities=15% Similarity=0.321 Sum_probs=53.7
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEE
Q 011197 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (491)
Q Consensus 32 V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~i 111 (491)
|.|.|-|.+.+..++=.|+.|+|+.+ .|.|++-+... ...... +..||-|.|.|.+.- + .+.+.+.++++++
T Consensus 1 v~v~GeVs~~~~~~GHvyfsLkD~~a--~i~cv~f~~~~-~~~~~~--l~~Gd~V~v~G~v~~-~--~G~~ql~v~~i~~ 72 (73)
T cd04487 1 VHIEGEVVQIKQTSGPTIFTLRDETG--TVWAAAFEEAG-VRAYPE--VEVGDIVRVTGEVEP-R--DGQLQIEVESLEV 72 (73)
T ss_pred CEEEEEEeccccCCCCEEEEEEcCCE--EEEEEEEchhc-cCCcCC--CCCCCEEEEEEEEec-C--CeEEEEEEeeEEE
Confidence 46889888764454457889999874 59998875432 122234 899999999999875 3 3579999999987
Q ss_pred E
Q 011197 112 V 112 (491)
Q Consensus 112 l 112 (491)
|
T Consensus 73 ~ 73 (73)
T cd04487 73 L 73 (73)
T ss_pred C
Confidence 5
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.04 Score=45.57 Aligned_cols=76 Identities=24% Similarity=0.334 Sum_probs=55.9
Q ss_pred EEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch--hhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeE
Q 011197 32 IVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (491)
Q Consensus 32 V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~--~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i 109 (491)
|++.|+|.++...++-.=+.|.|+|| +|.+.+....+.. ..... +..|++|.|.|.+..-+. ...|.+..+
T Consensus 2 v~~vG~V~~~~~~~~~~~~tL~D~TG--~I~~~~W~~~~~~~~~~~~~--~~~g~~v~v~G~v~~~~g---~~ql~i~~i 74 (95)
T cd04478 2 VTLVGVVRNVEEQSTNITYTIDDGTG--TIEVRQWLDDDNDDSSEVEP--IEEGTYVRVFGNLKSFQG---KKSIMAFSI 74 (95)
T ss_pred EEEEEEEEeeeEcccEEEEEEECCCC--cEEEEEeCCCCCcccccccc--cccCCEEEEEEEEcccCC---eeEEEEEEE
Confidence 78999999998864444457999997 4999887654321 12345 999999999999977653 477787777
Q ss_pred EEEcc
Q 011197 110 VLVGK 114 (491)
Q Consensus 110 ~ils~ 114 (491)
..+..
T Consensus 75 ~~v~d 79 (95)
T cd04478 75 RPVTD 79 (95)
T ss_pred EEeCC
Confidence 76654
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.011 Score=63.47 Aligned_cols=123 Identities=21% Similarity=0.229 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-------CCCC-CceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EGAG-EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-------eg~~-~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
--++++.+|.+.+|+.|++-|..||--|+|+++.- ++-+ ++|.+++.+
T Consensus 45 ~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg------------------------ 100 (500)
T COG0442 45 LGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRG------------------------ 100 (500)
T ss_pred cHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccC------------------------
Confidence 36889999999999999999999999999999432 2222 566665332
Q ss_pred cccccCcccccccchhhHH-HHHh---cc---C-CceEEEccccccCCCC--CCcccccccceeeEeccCCHHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYA---TA---L-SNVYTFGPTFRAENSN--TSRHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~---~g---~-~rvfeI~~~FR~E~~~--t~rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
++++.|+-..|=-. -++. .. + =++|||...||+|--. .---.-||+|=|.|..+.|.+++....+
T Consensus 101 -----~~~l~L~PTsEe~it~~~~~~i~SYkdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~~e~a~~~y~ 175 (500)
T COG0442 101 -----DRPLALRPTSEEVITDMFRKWIRSYKDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHADEEDAEETYE 175 (500)
T ss_pred -----CceeeeCCCcHHHHHHHHHHHhhhhhhCCcceeeeeeEEeccccCCCCccchheeeecccccccCCHHHHHHHHH
Confidence 34444554444332 2222 11 2 3799999999999421 1113479999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011197 288 AYLQLYSCMQ 297 (491)
Q Consensus 288 ~li~~~~~~i 297 (491)
+++..|....
T Consensus 176 ~~~~~Y~~if 185 (500)
T COG0442 176 KMLDAYSRIF 185 (500)
T ss_pred HHHHHHHHHH
Confidence 9888744433
|
|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.041 Score=54.93 Aligned_cols=101 Identities=15% Similarity=0.039 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--CCCC----Ccee-eeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC--EGAG----EQFC-VTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--eg~~----~~F~-vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
++..+..+..+.+.+++.|.+.||-||+||++-..+. ..+. ..|. +... +
T Consensus 3 ~~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~-------------------~---- 59 (272)
T PRK12294 3 NSEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQH-------------------E---- 59 (272)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecC-------------------C----
Confidence 3456677888999999999999999999999965433 1110 1110 1000 0
Q ss_pred ccccccCccccccc--chhhHHHHHhc---cCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHH
Q 011197 217 WSQDFFEKPAFLTV--SGQLNAETYAT---ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 217 ~~~~~f~~~~~L~~--Spql~lql~~~---g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~l 282 (491)
|+.+-|+- .|+.. ++++. +..|.|.+|++||++. +|+|+-+|.-..+.+..
T Consensus 60 ------Gr~laLRpD~T~~iA-R~~a~~~~~~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG~~~~a~ 115 (272)
T PRK12294 60 ------HQIYALRNDFTDQLL-RYYSMYPTAATKVAYAGLIIRNNE--------AAVQVGIENYAPSLANV 115 (272)
T ss_pred ------CCEEEEcCCCCHHHH-HHHHhcCCCCceEEEeccEeccCC--------CcceeceEEECCCchhH
Confidence 22222221 12222 33332 4459999999999873 48999999887543333
|
|
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.049 Score=45.80 Aligned_cols=77 Identities=17% Similarity=0.291 Sum_probs=59.1
Q ss_pred CcEEEEEEEEeeeec-CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 29 GLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
-+.|+|.|=|.+.+. .++-+|++|.|+. .+|+|++-.... ..+....++.|+-|.|.|.+.--+.. |.+.+.|.
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~--a~i~~~~~~~~~--~~i~~~~l~~G~~V~v~g~~~~y~~~-G~~sl~v~ 95 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEE--ASISCVIFRSRA--RRIRGFDLKDGDKVLVRGRVSFYEPR-GSLSLIVE 95 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCC--cEEEEEEEHHHH--hhCCCCCCCCCCEEEEEEEEEEECCC-cEEEEEEE
Confidence 478999999999988 5778999999987 579999986531 12220128999999999999876543 46888888
Q ss_pred eEE
Q 011197 108 KIV 110 (491)
Q Consensus 108 ~i~ 110 (491)
+++
T Consensus 96 ~i~ 98 (99)
T PF13742_consen 96 DID 98 (99)
T ss_pred EeE
Confidence 774
|
|
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.088 Score=43.65 Aligned_cols=70 Identities=20% Similarity=0.361 Sum_probs=49.7
Q ss_pred EEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch-------------------hhhhhcCCCCCcEEEEEEEEEe
Q 011197 34 VAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-------------------DQVKSGLITTGASIWIQGNVVP 94 (491)
Q Consensus 34 v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-------------------~~~~~~~L~~gd~V~V~G~v~~ 94 (491)
|.|+|.+++....-.-+.|.|+||. |-|++......- +.... +..|++|.|.|.+..
T Consensus 2 ivG~V~sv~~~~~~~~~tLdDgTG~--Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~~G~vvrV~G~i~~ 77 (92)
T cd04483 2 ILGTVVSRRERETFYSFGVDDGTGV--VNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKV--LEIGDLLRVRGSIRT 77 (92)
T ss_pred eEEEEEEEEecCCeEEEEEecCCce--EEEEEEcCcCcccccccccccccccccccccccccc--cCCCCEEEEEEEEec
Confidence 6799999987655455679999974 999887543200 12344 999999999999987
Q ss_pred cCCCceeEEEEEeeEE
Q 011197 95 SQGSKQKVELKVNKIV 110 (491)
Q Consensus 95 ~~~~~~~~el~~~~i~ 110 (491)
=+. ...|.++.+.
T Consensus 78 frg---~~ql~i~~~~ 90 (92)
T cd04483 78 YRG---EREINASVVY 90 (92)
T ss_pred cCC---eeEEEEEEEE
Confidence 654 3566666554
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.026 Score=59.30 Aligned_cols=117 Identities=17% Similarity=0.300 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC-CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc---
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF--- 222 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f--- 222 (491)
+.++--.+++.+=++..++||.|+.+|.|+..... |.+.. + . ++.+.|
T Consensus 173 ~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgql-p-k--------------------------f~e~~y~v~ 224 (429)
T COG0172 173 GARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQL-P-K--------------------------FEEDLYKVE 224 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCC-C-C--------------------------CcccceEec
Confidence 44444566666777777899999999999997654 32221 0 0 001222
Q ss_pred CcccccccchhhHH-HHHh------ccC-CceEEEccccccCCCCC---Cc---ccccccceeeEeccCCHHHHHHHHHH
Q 011197 223 EKPAFLTVSGQLNA-ETYA------TAL-SNVYTFGPTFRAENSNT---SR---HLAEFWMIEPELAFADLKDDMACATA 288 (491)
Q Consensus 223 ~~~~~L~~Spql~l-ql~~------~g~-~rvfeI~~~FR~E~~~t---~r---Hl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (491)
+..+||.-..|.-+ .+.. ..+ -+++-.+||||.|-.-. .| -..+|.++|.- .|..-++-...-|+
T Consensus 225 ~~~~~LipTaEvpl~~l~~~Eil~~~~LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v-~~~~Pe~S~~~~E~ 303 (429)
T COG0172 225 DPDLYLIPTAEVPLTNLHRDEILDEEDLPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELV-VITKPEESEEELEE 303 (429)
T ss_pred CCCEEEEecchhhhHHhhcccccccccCCeeeEEEChhhhcccccccccccceeeeeeeeeEEEE-EEeCcchhHHHHHH
Confidence 22467777766655 3322 123 35777999999995411 11 12389999984 46777777777777
Q ss_pred HHHH
Q 011197 289 YLQL 292 (491)
Q Consensus 289 li~~ 292 (491)
|+..
T Consensus 304 m~~~ 307 (429)
T COG0172 304 MLGN 307 (429)
T ss_pred HHHH
Confidence 7766
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.041 Score=59.19 Aligned_cols=121 Identities=17% Similarity=0.166 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
..++...+++.++++..++||.||.||.|..... ++.+. +. ...+ ..+.... +..
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~-~p-~~e~-----------~~~y~ie-----------~ed 287 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGF-QP-RGDN-----------TQVYSID-----------GSD 287 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCC-Cc-cccc-----------CceeEEC-----------CCc
Confidence 4446678999999999999999999999998654 23231 00 0000 0000000 223
Q ss_pred cccccchh-----hHH-HHHh-ccC-CceEEEccccccCCCCCC------cccccccceeeEeccCCHHHHHHHHHHHHH
Q 011197 226 AFLTVSGQ-----LNA-ETYA-TAL-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKDDMACATAYLQ 291 (491)
Q Consensus 226 ~~L~~Spq-----l~l-ql~~-~g~-~rvfeI~~~FR~E~~~t~------rHl~EFtmlE~e~~~~~~~~lm~~~e~li~ 291 (491)
.||.-..| +|+ +.+. ..+ =|+.+.++|||.|-+... --.-+|++.|... |..-++..+..++++.
T Consensus 288 ~~Li~TaE~Pl~~~~~~~ils~~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~peqs~~e~e~ll~ 366 (502)
T PLN02320 288 QCLIGTAEIPVGGIHMDSILLESALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICRPEESESFHEELIQ 366 (502)
T ss_pred eEEeecccccccccccccccCHhhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EECHHHHHHHHHHHHH
Confidence 44532222 333 3221 123 479999999999955111 1123899999965 6788888888888877
Q ss_pred H
Q 011197 292 L 292 (491)
Q Consensus 292 ~ 292 (491)
.
T Consensus 367 ~ 367 (502)
T PLN02320 367 I 367 (502)
T ss_pred H
Confidence 6
|
|
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.059 Score=57.78 Aligned_cols=140 Identities=14% Similarity=0.077 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHH-hhCCcEEeecceeeccCC---CCCCC-----ceeeeecCC-Cc-ccc-cCC--CCCCCCCCCC
Q 011197 147 VARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGAGE-----QFCVTTLIP-SS-REA-AES--PVDAIPKTKD 212 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff-~~~~F~EV~TPiL~~~~~---eg~~~-----~F~vt~~~~-~~-~~~-~~~--~~~~~~~~~~ 212 (491)
..++...+.+.+.+.+ .+.||.||.+|.|.+... +|.-+ .|.|++..- +. -+. +.. ....+|..
T Consensus 222 ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~-- 299 (520)
T TIGR00415 222 ITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPID-- 299 (520)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhccccccccccccccc--
Confidence 5567777888887655 556999999999998553 22222 233432210 00 000 000 00000000
Q ss_pred CCcCccccccCcccccccchhhHH-HHHhcc------C-CceEEE-ccccccCCC--CCCcccccccceeeEeccCCHHH
Q 011197 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTF-GPTFRAENS--NTSRHLAEFWMIEPELAFADLKD 281 (491)
Q Consensus 213 ~~~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI-~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~ 281 (491)
. ++...=..+++|+-+.+..+ .+++.- + -|+|+. ++|||.|.. ++-.=.-||+|.|.-. +.+.++
T Consensus 300 -~--L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~tpEe 375 (520)
T TIGR00415 300 -K--LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAEPEE 375 (520)
T ss_pred -c--ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeCHHH
Confidence 0 00000012456888887776 444322 2 368994 489999974 2222345999999988 889999
Q ss_pred HHHHHHHHHHH
Q 011197 282 DMACATAYLQL 292 (491)
Q Consensus 282 lm~~~e~li~~ 292 (491)
..+..++++..
T Consensus 376 a~e~~e~mle~ 386 (520)
T TIGR00415 376 TEEIRDKTLEL 386 (520)
T ss_pred HHHHHHHHHHH
Confidence 98888888866
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.022 Score=61.58 Aligned_cols=141 Identities=12% Similarity=0.066 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHH-HhhCCcEEeecceeeccCC---CCCC-----CceeeeecCC-CcccccC----CCCCCCCCC
Q 011197 145 GAVARVRNALAYATHKF-FQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIP-SSREAAE----SPVDAIPKT 210 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~f-f~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~-~~~~~~~----~~~~~~~~~ 210 (491)
....++...+.+.+++. ..+.||.||.||.|.+... .|.- +.|.|+.... +..+... .+...++-.
T Consensus 220 p~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~ 299 (517)
T PRK00960 220 PPMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIE 299 (517)
T ss_pred ChHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhcccccccccc
Confidence 34677788899999877 4667999999999998543 1222 2333422110 0000000 000000000
Q ss_pred CCCCcCccccccCccc-ccccchhhHH-HHHh----ccCC---ceEE-EccccccCCC--CCCcccccccceeeEeccCC
Q 011197 211 KDGLIDWSQDFFEKPA-FLTVSGQLNA-ETYA----TALS---NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 211 ~~~~~~~~~~~f~~~~-~L~~Spql~l-ql~~----~g~~---rvfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~ 278 (491)
++ ......+. .|+-+...+. -+.. +.-+ |+|+ .|+|||+|.. ++-.=.-||+|.|.- .|++
T Consensus 300 -----~~-~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~t 372 (517)
T PRK00960 300 -----KL-KEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGT 372 (517)
T ss_pred -----cc-ccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeC
Confidence 00 00001111 2222222222 1222 2112 7899 5699999952 222223599999998 7889
Q ss_pred HHHHHHHHHHHHHH
Q 011197 279 LKDDMACATAYLQL 292 (491)
Q Consensus 279 ~~~lm~~~e~li~~ 292 (491)
.+++.+..++++.+
T Consensus 373 pEqs~ee~e~ll~~ 386 (517)
T PRK00960 373 PEQVEEIRDELLKY 386 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998855
|
|
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.11 Score=51.43 Aligned_cols=79 Identities=16% Similarity=0.288 Sum_probs=55.4
Q ss_pred CCcEEEEEEEEeeeecC----CCeEEEEEEcCCCccceEEEEeCCccc-h-hhhhhcCCCCCcEEEEEEEEEecCCCcee
Q 011197 28 VGLMIVVAGWVRTLRAQ----SSVTFIEVNDGSCLSNMQCVMTSDAEG-Y-DQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~-~~~~~~~L~~gd~V~V~G~v~~~~~~~~~ 101 (491)
.=+.|+|.|.|..+... .+.+|+.|-|+||...|.|++..+... . -.+.. + .|++|.|+|++. .+.
T Consensus 65 PI~~v~i~G~Vv~~~~~~~~~~~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l~~~~--~-~G~~V~VkG~vs-----r~~ 136 (256)
T PF10451_consen 65 PIRWVRIVGVVVGIDYKWIENEDRIILTIDDSSGANTIECKCSKSSYLSMGLPIND--L-IGKVVEVKGTVS-----RNE 136 (256)
T ss_dssp EE-EEEEEEEEEEEEEEE-BBTCEEEEEEE-SSCS-EEEEEEEHHHHHCCCHHCTT----TT-EEEEEEEEE-----SSS
T ss_pred ccEEEEEEEEEEEEEEEeecccceEEEEEeCCCCceeEEEEEEcccccccCCCccC--C-CCcEEEEEEEEc-----cCc
Confidence 34679999999999754 678899999999832699998864210 0 11334 6 999999999999 235
Q ss_pred EEEEEeeEEEEcc
Q 011197 102 VELKVNKIVLVGK 114 (491)
Q Consensus 102 ~el~~~~i~ils~ 114 (491)
.+|.++.+.++..
T Consensus 137 ~ql~ve~i~~~~~ 149 (256)
T PF10451_consen 137 RQLDVERIELVRD 149 (256)
T ss_dssp EEEEEEEEEEETS
T ss_pred EEEEEEEEEccCC
Confidence 7899999987743
|
Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A. |
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.2 Score=41.39 Aligned_cols=73 Identities=21% Similarity=0.429 Sum_probs=52.6
Q ss_pred EEEEEEeeeec--CCCeEEEEEEcCCCccceEEEEeCCccch-hhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeE
Q 011197 33 VVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (491)
Q Consensus 33 ~v~G~V~~~R~--~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i 109 (491)
+|.|.|.+.+. .+.=.|+.|.|.++ .|.+++-+..-.+ ..... |..||-|.|.|.+..-. .|.++++
T Consensus 2 ~v~GeVs~~~~~~~sGH~yFtlkD~~~--~i~cv~f~~~g~~~~~~~~--l~~Gd~V~v~G~v~~y~------ql~ve~l 71 (91)
T cd04482 2 RVTGKVVEEPRTIEGGHVFFKISDGTG--EIDCAAYEPTKEFRDVVRL--LIPGDEVTVYGSVRPGT------TLNLEKL 71 (91)
T ss_pred EEEEEEeCCeecCCCCCEEEEEECCCc--EEEEEEECcccccccccCC--CCCCCEEEEEEEEecCC------EEEEEEE
Confidence 68999998854 44457779999874 5998876543111 12235 99999999999986653 6888888
Q ss_pred EEEccC
Q 011197 110 VLVGKS 115 (491)
Q Consensus 110 ~ils~~ 115 (491)
++++-.
T Consensus 72 ~~~glg 77 (91)
T cd04482 72 RVIRLA 77 (91)
T ss_pred EECCCc
Confidence 887654
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.053 Score=58.12 Aligned_cols=79 Identities=15% Similarity=0.292 Sum_probs=55.8
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|++|+|.|-|..++.-++-+-+.|+|++|. +++-.-.. .+...-.. +..||+|.|.|.|...... +.|.+
T Consensus 211 ~ig~tV~I~GeV~qikqT~GPTVFtltDetg~--i~aAAFe~-aGvRAyP~--IevGdiV~ViG~V~~r~g~---lQiE~ 282 (715)
T COG1107 211 MIGKTVRIEGEVTQIKQTSGPTVFTLTDETGA--IWAAAFEE-AGVRAYPE--IEVGDIVEVIGEVTRRDGR---LQIEI 282 (715)
T ss_pred hcCceEEEEEEEEEEEEcCCCEEEEEecCCCc--eehhhhcc-CCcccCCC--CCCCceEEEEEEEeecCCc---EEEee
Confidence 68999999999999998644455589999975 77744321 11112235 9999999999999887653 55555
Q ss_pred eeEEEEc
Q 011197 107 NKIVLVG 113 (491)
Q Consensus 107 ~~i~ils 113 (491)
..++.|.
T Consensus 283 ~~me~L~ 289 (715)
T COG1107 283 EAMEKLT 289 (715)
T ss_pred hhhHHhh
Confidence 5555443
|
|
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.24 Score=41.93 Aligned_cols=81 Identities=15% Similarity=0.282 Sum_probs=52.2
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (491)
.+++++++.. ..++.|+|.|.|.+.-..- -| .++|.+| .|+|-++.+. |. -.. ++.++-|.|.|
T Consensus 22 ~~TV~~a~~~------~Dd~~V~L~G~Iv~~l~~d--~Y-~F~D~TG--~I~VeId~~~--w~-g~~--vt~~~~Vri~G 85 (103)
T PF04076_consen 22 VTTVAQAKNA------KDDTPVTLEGNIVKQLGDD--KY-LFRDATG--EIEVEIDDDV--WR-GQT--VTPDDKVRISG 85 (103)
T ss_dssp ---HHHHTTS-------SSEEEEEEEEEEEEEETT--EE-EEEETTE--EEEEE--GGG--ST-T------TTSEEEEEE
T ss_pred eEeHHHHhhC------cCCCeEEEEEEEEEEecCC--EE-EEECCCC--cEEEEEChhh--cC-Ccc--cCCCCEEEEEE
Confidence 3567777653 5788999999987754432 23 5799996 5898887653 11 124 89999999999
Q ss_pred EEEecCCCceeEEEEEeeEE
Q 011197 91 NVVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~ 110 (491)
.+.+.-. ..+|.|.+|+
T Consensus 86 eVDk~~~---~~~IdV~~I~ 102 (103)
T PF04076_consen 86 EVDKDWN---KTEIDVDRIE 102 (103)
T ss_dssp EEEEETT---EEEEEEEEEE
T ss_pred EEeCCCC---ceEEEEEEEE
Confidence 9997643 4788887774
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.24 Score=50.47 Aligned_cols=125 Identities=22% Similarity=0.170 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-------CC-CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC-------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
--+|.-.++.+.++.-|+.-|=.+|.-|+|++..- ++ +.++|.+...+
T Consensus 50 lg~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~------------------------ 105 (457)
T KOG2324|consen 50 LGLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRK------------------------ 105 (457)
T ss_pred chHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccC------------------------
Confidence 35777889999999999999999999999998432 11 33555542211
Q ss_pred cccccCcccccccchhhHH-HHHhccCC--------ceEEEccccccCCCCCC---cccccccceeeEeccCCHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYATALS--------NVYTFGPTFRAENSNTS---RHLAEFWMIEPELAFADLKDDMAC 285 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~g~~--------rvfeI~~~FR~E~~~t~---rHl~EFtmlE~e~~~~~~~~lm~~ 285 (491)
++...|+..-|=-- .+|+.-.. +|||||+=||+|-- .+ ----||.|=|.|.=..|-++-| .
T Consensus 106 -----gkq~cL~pThEE~iT~lmat~~~lsykqlPi~vYQigrKfRDElr-pRfGLlRgREFlMKDmYsFd~~~etA~-q 178 (457)
T KOG2324|consen 106 -----GKQMCLTPTHEEDITALMATYIPLSYKQLPIRVYQIGRKFRDELR-PRFGLLRGREFLMKDMYSFDSDEETAQ-Q 178 (457)
T ss_pred -----CCEeccCCchHHHHHHHHHhcCccccccCcEEeeeechhhhhccC-ccccchhhHHHHHhhhhcccCCHHHHH-H
Confidence 23333443333333 45555443 79999999999931 11 1225999999997333444444 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 011197 286 ATAYLQLYSCMQVRYI 301 (491)
Q Consensus 286 ~e~li~~~~~~i~~~~ 301 (491)
+-.++...-|++++.+
T Consensus 179 Ty~~v~~aY~~iFkqL 194 (457)
T KOG2324|consen 179 TYQLVDQAYDRIFKQL 194 (457)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5555655344466554
|
|
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.55 Score=35.48 Aligned_cols=69 Identities=17% Similarity=0.395 Sum_probs=49.7
Q ss_pred EEEEEEeeeecC---CCeEEEEEEcCCCccceEEEEeCCccchhhh-hhcCCCCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 33 VVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 33 ~v~G~V~~~R~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
++.|.|.+++.. +..+++.|.|+++ +.+.+++-.+. ++.. .. +..|+.|.|+|.+.... +...+.+.+
T Consensus 1 ~v~g~v~~~~~~~~~~~~~~~~l~D~~~-~~i~~~~~~~~--~~~~~~~--~~~g~~v~v~g~v~~~~---~~~~l~~~~ 72 (75)
T cd03524 1 TIVGIVVAVEEIRTEGKVLIFTLTDGTG-GTIRVTLFGEL--AEELENL--LKEGQVVYIKGKVKKFR---GRLQLIVES 72 (75)
T ss_pred CeEEEEEeecccccCCeEEEEEEEcCCC-CEEEEEEEchH--HHHHHhh--ccCCCEEEEEEEEEecC---CeEEEEeee
Confidence 368889888764 3789999999983 25899887653 2222 34 99999999999997653 246666654
Q ss_pred E
Q 011197 109 I 109 (491)
Q Consensus 109 i 109 (491)
+
T Consensus 73 ~ 73 (75)
T cd03524 73 I 73 (75)
T ss_pred e
Confidence 4
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.27 Score=54.11 Aligned_cols=113 Identities=17% Similarity=0.157 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCC--CCC---C--CceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccC
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDC--EGA---G--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--eg~---~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (491)
..++.+.+|++|...||.|+-|..+++..- ... . +. +.-.|+- + .
T Consensus 361 ~~~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~--i~l~NPl----------------------s----~ 412 (552)
T PRK09616 361 IEKLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDY--VEVLNPI----------------------S----E 412 (552)
T ss_pred HHHHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCe--EEEcCCC----------------------c----c
Confidence 456677899999999999999999987621 100 0 11 2122220 0 1
Q ss_pred cccccccchhhHH-HHHh---ccC--CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 224 KPAFLTVSGQLNA-ETYA---TAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 224 ~~~~L~~Spql~l-ql~~---~g~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
.-.+|++|-=--+ +.+. .+. -|+||||+||+.+.. +..|..|++++-+-.+.. |+.++...+|.|+..
T Consensus 413 e~svLRtsLlpgLL~~~~~N~~~~~~~~lFEiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 413 DYTVVRTSLLPSLLEFLSNNKHREYPQKIFEIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred chheEeccchHHHHHHHHhccCCCCCeeEEEeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 1124555543333 3332 222 279999999998753 345778999999888864 788888888887765
|
|
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.64 Score=37.32 Aligned_cols=67 Identities=18% Similarity=0.304 Sum_probs=48.5
Q ss_pred EEEEEEEeeeec--CCCeEEEEEEcCCCccceEEEEeCCccchh--hhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 32 IVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYD--QVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 32 V~v~G~V~~~R~--~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~--~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
|.++|-|.++|. .|+. |+.|.|.+| ++.+++-++. |+ ..+ ..|..+.+|.|+|.+... . + .+.++
T Consensus 2 v~i~GiI~~v~~TK~g~~-~~~leD~~G--~~Ev~~F~~~--~~~~~~~-~~l~~d~~v~v~g~v~~~--~--~-~l~~~ 70 (79)
T cd04490 2 VSIIGMVNDVRSTKNGHR-IVELEDTTG--RITVLLTKDK--EELFEEA-EDILPDEVIGVSGTVSKD--G--G-LIFAD 70 (79)
T ss_pred EEEEEEEeEEEEcCCCCE-EEEEECCCC--EEEEEEeCch--hhhhhhh-hhccCCCEEEEEEEEecC--C--C-EEEEE
Confidence 678999999873 2556 999999996 4999988754 44 333 248999999999999542 2 2 55555
Q ss_pred eE
Q 011197 108 KI 109 (491)
Q Consensus 108 ~i 109 (491)
++
T Consensus 71 ~I 72 (79)
T cd04490 71 EI 72 (79)
T ss_pred Ee
Confidence 44
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.28 Score=52.50 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=59.1
Q ss_pred CCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.++.|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+ ..|..+.+|.|+|.+.... +.+
T Consensus 279 ~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~--ie~vvFp~--~y~~~~-~~l~~~~~v~v~G~v~~~~---~~~ 350 (449)
T PRK07373 279 EKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQ--SEAVVFPK--SYERIS-ELLQVDARLIIWGKVDRRD---DQV 350 (449)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHH-HHhccCCEEEEEEEEEecC---CeE
Confidence 57789999999998753 2 4899999999974 99998764 355543 2499999999999997642 357
Q ss_pred EEEEeeEEEE
Q 011197 103 ELKVNKIVLV 112 (491)
Q Consensus 103 el~~~~i~il 112 (491)
.+.++++.-+
T Consensus 351 ~liv~~i~~l 360 (449)
T PRK07373 351 QLIVEDAEPI 360 (449)
T ss_pred EEEEeEeecH
Confidence 7888777543
|
|
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.49 Score=41.50 Aligned_cols=80 Identities=14% Similarity=0.216 Sum_probs=57.0
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (491)
++++++++. ..+..|+|.|.|.+.-..- - ..++|++| +|+|-++.+. |.- .. ++++|-|.|.|.
T Consensus 46 ~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d--~-Y~F~D~TG--~I~VeId~~~--w~G-~~--v~p~d~V~I~Ge 109 (126)
T TIGR00156 46 MTVDFAKSM------HDGASVTLRGNIISHIGDD--R-YVFRDKSG--EINVVIPAAV--WNG-RE--VQPKDMVNISGS 109 (126)
T ss_pred EeHHHHhhC------CCCCEEEEEEEEEEEeCCc--e-EEEECCCC--CEEEEECHHH--cCC-Cc--CCCCCEEEEEEE
Confidence 556666543 5788999999998765443 2 35799997 4999887643 111 13 899999999999
Q ss_pred EEecCCCceeEEEEEeeEE
Q 011197 92 VVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ 110 (491)
|-+.-. ..||.|++|+
T Consensus 110 VDk~~~---~~~IdV~~I~ 125 (126)
T TIGR00156 110 LDKKSA---PAEVDVTHIQ 125 (126)
T ss_pred ECCCCC---CeEEEEEEEE
Confidence 986533 3678777775
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=93.78 E-value=0.25 Score=43.98 Aligned_cols=83 Identities=16% Similarity=0.240 Sum_probs=49.7
Q ss_pred ceeeccccCCccc-----CCCCCCcEEEEEEEEeeeec-CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCc
Q 011197 11 KLKIVDVKGGPNE-----GLDRVGLMIVVAGWVRTLRA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGA 84 (491)
Q Consensus 11 ~~~i~~l~~~~~~-----~~~~~~~~V~v~G~V~~~R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd 84 (491)
.++..+|.+.|++ ...+.|+.|.|.|.|..++. .++-.++...+..+...++|.++.+......... |+.||
T Consensus 44 ~~sa~~L~~~y~~N~~~A~~kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--l~~G~ 121 (144)
T PF12869_consen 44 SVSAEELYKDYKDNEVAADKKYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQEKRASVAK--LKKGQ 121 (144)
T ss_dssp EEEHHHHHHHHHH-HHHHHHHHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGGGHHHHHH----TTS
T ss_pred eecHHHHHHHHHhCHHHHHhhcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchhhhhhHhc--CCCCC
Confidence 3555666665531 33568999999999999976 4555677677655556799998876533333446 99999
Q ss_pred EEEEEEEEEec
Q 011197 85 SIWIQGNVVPS 95 (491)
Q Consensus 85 ~V~V~G~v~~~ 95 (491)
.|.|+|.+..-
T Consensus 122 ~Vti~G~~~g~ 132 (144)
T PF12869_consen 122 KVTIKGICTGY 132 (144)
T ss_dssp EEEEEEE----
T ss_pred EEEEEEEEEee
Confidence 99999998654
|
; PDB: 3F1Z_I. |
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.2 Score=35.14 Aligned_cols=62 Identities=16% Similarity=0.345 Sum_probs=46.0
Q ss_pred CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccC
Q 011197 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 45 gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~ 115 (491)
+.++++.|.|++| .+.+++-.+.. ..... |..|..|.|.|.+.... +..++.+.++..+...
T Consensus 18 ~~~~~~~l~D~tg--~i~~~~f~~~~--~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~~i~~l~~~ 79 (83)
T cd04492 18 KPYLALTLQDKTG--EIEAKLWDASE--EDEEK--FKPGDIVHVKGRVEEYR---GRLQLKIQRIRLVTEE 79 (83)
T ss_pred CcEEEEEEEcCCC--eEEEEEcCCCh--hhHhh--CCCCCEEEEEEEEEEeC---CceeEEEEEEEECCcc
Confidence 4589999999997 49998876443 22334 99999999999997632 2578888888766543
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.1 Score=57.28 Aligned_cols=113 Identities=19% Similarity=0.282 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
.-..+|+.+.+.+|.-..+.||.||.||.+....- +.++-+ -+.|...
T Consensus 218 kG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l------~~~SGH--------------------------~~~y~e~ 265 (589)
T COG0441 218 KGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLEL------WELSGH--------------------------WDNYKED 265 (589)
T ss_pred CcccHHHHHHHHHHHHHHhcCceEecCCeeeeccc------chhccc--------------------------hhhcccc
Confidence 34578899999999999999999999999988532 211000 0122333
Q ss_pred cccccch--hhHH---------HHHhccC-------CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHHH
Q 011197 226 AFLTVSG--QLNA---------ETYATAL-------SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 226 ~~L~~Sp--ql~l---------ql~~~g~-------~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (491)
.|+..+. ++.+ ++..... -|++++|.|||.|.+ +.-| +-+|||=|.-. |+..+++.
T Consensus 266 mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~LP~r~~E~g~v~R~E~S-Gal~GL~RvR~ftqdDaHi-fc~~dQi~ 343 (589)
T COG0441 266 MFLTESDDREYALKPMNCPGHILIFKSGLRSYRELPLRLAEFGYVYRYEKS-GALHGLMRVRGFTQDDAHI-FCTPDQIK 343 (589)
T ss_pred ceeeccCChhheeeeccCHhHHHHHhcCCcceeccchhhhhcceeecccCc-chhhccccccceeecccce-eccHHHHH
Confidence 3333332 1111 2222221 388999999999987 4444 47899998854 67788888
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+.+.+..
T Consensus 344 ~E~~~~~~~ 352 (589)
T COG0441 344 DEFKGILEL 352 (589)
T ss_pred HHHHHHHHH
Confidence 888887777
|
|
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.57 Score=40.54 Aligned_cols=83 Identities=16% Similarity=0.155 Sum_probs=58.7
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (491)
.+++++.+.. ..+..|++.|-|.+.-. +=.| ..||.+| +|+|.++....+ -.. +++.|-|.+.|
T Consensus 45 ~~TV~~Ak~~------~Dda~V~l~GnIv~qi~--~D~y-~FrD~sG--eI~VeIdd~~w~---g~t--v~P~dkV~I~G 108 (128)
T COG3111 45 VTTVDQAKTL------HDDAWVSLEGNIVRQIG--DDRY-VFRDASG--EINVDIDDKVWN---GQT--VTPKDKVRIQG 108 (128)
T ss_pred eeEHHHhhcc------ccCCeEEEEeeEEEeeC--CceE-EEEcCCc--cEEEEecccccC---Ccc--cCcccEEEEEe
Confidence 3455555443 56889999998865432 2345 4799997 599999876421 124 99999999999
Q ss_pred EEEecCCCceeEEEEEeeEEEE
Q 011197 91 NVVPSQGSKQKVELKVNKIVLV 112 (491)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~il 112 (491)
.+-+.-. ..||.|+.|+.+
T Consensus 109 evDk~~~---~~eIdV~~I~k~ 127 (128)
T COG3111 109 EVDKDWN---SVEIDVKHIEKL 127 (128)
T ss_pred EEcCCCc---cceeEhhheEec
Confidence 9987633 478888888765
|
|
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.55 Score=36.85 Aligned_cols=71 Identities=20% Similarity=0.384 Sum_probs=49.1
Q ss_pred EEEEEeeeec----CC-CeEEEEEEcCCCccceEEEEeCCccchhhh-hhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 34 VAGWVRTLRA----QS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQV-KSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 34 v~G~V~~~R~----~g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~-~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
+.|.|.+++. .| .++++.|.|++| .+.+++-.+ .|+.. .. |..|..|.|.|.+.... +..++.+.
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg--~~~~~~f~~--~~~~~~~~--l~~g~~v~v~G~v~~~~---~~~~l~~~ 72 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTG--SIEVVVFPE--TYEKYRDL--LKEDALLLVEGKVERRD---GGLRLIAE 72 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCC--eEEEEECHH--HHHHHHHH--hcCCCEEEEEEEEEecC---CceEEEee
Confidence 4566665432 23 479999999996 488888753 23322 34 99999999999998753 25788877
Q ss_pred eEEEEc
Q 011197 108 KIVLVG 113 (491)
Q Consensus 108 ~i~ils 113 (491)
++..+.
T Consensus 73 ~i~~~~ 78 (84)
T cd04485 73 RIEDLE 78 (84)
T ss_pred ccccHH
Confidence 765443
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.47 E-value=1 Score=39.79 Aligned_cols=80 Identities=13% Similarity=0.196 Sum_probs=56.6
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (491)
+++++.++. ..+..|+|.|.|.+.=..- - ...+|++| .|+|-++.+.. . -.. ++++|-|.+.|.
T Consensus 50 ~tV~~a~~~------~Dd~~V~L~G~Iv~~lg~d--~-Y~F~D~tG--~I~VeID~~~w--~-G~~--v~p~~kV~I~Ge 113 (130)
T PRK10053 50 MTVEQAKTM------HDGATVSLRGNLIDHKGDD--R-YVFRDKSG--EINVIIPAAVF--D-GRE--VQPDQMININGS 113 (130)
T ss_pred EEHHHhhcC------cCCCeEEEEEEEEEEeCCc--e-EEEECCCC--cEEEEeCHHHc--C-CCc--CCCCCEEEEEEE
Confidence 456665543 5688999999997653332 2 35799997 49998886531 1 113 999999999999
Q ss_pred EEecCCCceeEEEEEeeEE
Q 011197 92 VVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ 110 (491)
+-+.-. ..||.|++|+
T Consensus 114 vDk~~~---~~~IdV~~i~ 129 (130)
T PRK10053 114 LDKKSA---PPVVRVTHLQ 129 (130)
T ss_pred ECCCCC---CeEEEEEEEe
Confidence 987633 3788887775
|
|
| >cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) | Back alignment and domain information |
|---|
Probab=92.39 E-value=1.3 Score=37.32 Aligned_cols=68 Identities=15% Similarity=0.284 Sum_probs=49.1
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|+.|++-|+|.+.+.. . +.+.+..| ..++|.++... . +..+-+|.|.|++.. ..+|.+
T Consensus 13 f~gk~V~ivGkV~~~~~~---~-~~~~~~Dg-~~v~v~l~~~~-------~--~~~~~~vEViG~V~~------~~~I~~ 72 (101)
T cd04479 13 FVGKTVRIVGKVEKVDGD---S-LTLISSDG-VNVTVELNRPL-------D--LPISGYVEVIGKVSP------DLTIRV 72 (101)
T ss_pred hCCCEEEEEEEEEEecCC---e-EEEEcCCC-CEEEEEeCCCC-------C--cccCCEEEEEEEECC------CCeEEE
Confidence 689999999999999754 2 34555444 36999888643 3 788899999999974 246666
Q ss_pred eeEEEEcc
Q 011197 107 NKIVLVGK 114 (491)
Q Consensus 107 ~~i~ils~ 114 (491)
..+.-++.
T Consensus 73 ~~~~~~g~ 80 (101)
T cd04479 73 LSYIDFGD 80 (101)
T ss_pred EEEEECCC
Confidence 66555443
|
RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer. |
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=92.29 E-value=0.86 Score=47.62 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=66.4
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeee---e----cC---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R----~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L 80 (491)
-++|+||.. .+..|++.|||.++ | .. |++.=+.|-|.+| +|++++..+... .+..+.|
T Consensus 57 ~~kI~dL~~--------~~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG--~ir~tlW~~~a~--~~~~~~l 124 (374)
T PRK15491 57 TTKIADINE--------SSSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETG--SIRLTLWDDLAD--LIKTGDI 124 (374)
T ss_pred cccHHHCCC--------CCCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCC--eEEEEEECchhh--hhccCCc
Confidence 356777754 34679999999986 3 22 4666678999996 599999875421 1222349
Q ss_pred CCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCC
Q 011197 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (491)
Q Consensus 81 ~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~ 118 (491)
..|+++.|.|.+.+.-. .+||.+.+-..+.+|...
T Consensus 125 e~G~v~~I~~~~~~~y~---g~Ei~i~~~~~i~~~~~~ 159 (374)
T PRK15491 125 EVGKSLNISGYAKEGYS---GIEVNIGRYGGISESDEN 159 (374)
T ss_pred CCCCEEEEeeeeccCcc---cEEEEeCCCceeeecccc
Confidence 99999999997554432 489999988888887643
|
|
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.7 Score=54.50 Aligned_cols=79 Identities=18% Similarity=0.261 Sum_probs=60.6
Q ss_pred CCcEEEEEEEEeeeecC---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEE
Q 011197 28 VGLMIVVAGWVRTLRAQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el 104 (491)
.+..|+|+|.|..++.. ++++|+.|.|.+|. +.+++-++. |+..+ ..|..|.++.|+|++.... +.+.+
T Consensus 952 ~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~--~e~~ifp~~--~~~~~-~~l~~~~~~~v~g~v~~~~---~~~~~ 1023 (1046)
T PRK05672 952 DGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGM--VNVVVWPGL--WERQR-REALGARLLLVRGRVQNAE---GVRHL 1023 (1046)
T ss_pred CCCEEEEEEEEEEEEEecCCCceEEEEEecCCCC--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CeEEE
Confidence 56789999999988652 34999999999974 999998753 55443 2499999999999998642 25788
Q ss_pred EEeeEEEEcc
Q 011197 105 KVNKIVLVGK 114 (491)
Q Consensus 105 ~~~~i~ils~ 114 (491)
.++++.-+..
T Consensus 1024 ~~~~i~~~~~ 1033 (1046)
T PRK05672 1024 VADRLEDLSP 1033 (1046)
T ss_pred EEeeeechHH
Confidence 8888865544
|
|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.87 E-value=1.1 Score=42.27 Aligned_cols=94 Identities=13% Similarity=0.200 Sum_probs=64.5
Q ss_pred ceeeccccCCccc---CC-CCCC---cEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc-hhhhhhcCCCC
Q 011197 11 KLKIVDVKGGPNE---GL-DRVG---LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITT 82 (491)
Q Consensus 11 ~~~i~~l~~~~~~---~~-~~~~---~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~~~~~~~~L~~ 82 (491)
.++||+|+..... ++ .-.+ ..|++.|||.++..+-.-+|+.|.||+|. |-|-..+.... -++.+. +..
T Consensus 41 pvTIKQIl~~~qd~~d~~f~vd~~Ev~~V~fVGvvrni~~~ttn~~~~iEDGTG~--Ievr~W~~~~~~~e~~~d--~~~ 116 (258)
T COG5235 41 PVTIKQILSCDQDETDSTFLVDSAEVTNVQFVGVVRNIKTSTTNSMFVIEDGTGS--IEVRFWPGNSYEEEQCKD--LEE 116 (258)
T ss_pred eeEHHHhhcccccccCCceeecceEEeeEEEEEEEEeeeecccceEEEEecCCce--EEEEecCCCchHHHhccc--ccc
Confidence 4899999875210 00 0012 24789999999999977788999999974 88877765432 233445 778
Q ss_pred CcEEEEEEEEEecCCCceeEEEEEeeEEE
Q 011197 83 GASIWIQGNVVPSQGSKQKVELKVNKIVL 111 (491)
Q Consensus 83 gd~V~V~G~v~~~~~~~~~~el~~~~i~i 111 (491)
|-.|.|.|-++.=.+ +..|.+..|.-
T Consensus 117 ~~yvkV~G~lk~F~G---K~~I~~~~i~~ 142 (258)
T COG5235 117 QNYVKVNGSLKTFNG---KRSISASHISA 142 (258)
T ss_pred ccEEEEecceeeeCC---eeEEehhheee
Confidence 889999999876543 46666655543
|
|
| >PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair | Back alignment and domain information |
|---|
Probab=91.75 E-value=0.96 Score=38.57 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=38.5
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~ 97 (491)
+.|+.|++-|+|.+....|+.+-+.-.|+. .++|.++... . +..+.+|.|.|++....+
T Consensus 16 ~~gk~VrivGkv~~~~~~g~~~~l~~~d~~---~V~v~l~~~~-------~--~~~~~~vEviG~V~~~~~ 74 (109)
T PF08661_consen 16 FVGKTVRIVGKVESVDPDGGSATLSTSDGG---QVTVSLNPPS-------D--EELSKYVEVIGKVNDDGT 74 (109)
T ss_dssp GTTSEEEEEEEEEEE-TTSSEEEEE-TTS----EEEEEESS---------S--S---SEEEEEEEE-TTS-
T ss_pred hCCCeEEEEEEEeeEcCCCCEEEEEcCCCC---EEEEEeCCCC-------C--CCCCCEEEEEEEEcCCCC
Confidence 699999999999999976665444334653 5888877542 2 667899999999977643
|
; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D. |
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.75 Score=54.77 Aligned_cols=77 Identities=9% Similarity=0.214 Sum_probs=59.0
Q ss_pred CCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.+++|+|+|.|.++|.. | .++|+.|.|.+|. +.+++-++ .|+..+ ..|..|.+|.|+|++.... +.+
T Consensus 999 ~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~--~e~vvFp~--~y~~~~-~~l~~~~~~~v~g~v~~~~---~~~ 1070 (1170)
T PRK07374 999 DKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGS--CEAVVFPK--SYERLS-DHLMTDTRLLVWAKVDRRD---DRV 1070 (1170)
T ss_pred CCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCC--EEEEECHH--HHHHHH-HHhccCCEEEEEEEEEecC---CeE
Confidence 57789999999998752 2 4899999999974 99998764 355543 2499999999999997643 257
Q ss_pred EEEEeeEEEE
Q 011197 103 ELKVNKIVLV 112 (491)
Q Consensus 103 el~~~~i~il 112 (491)
.+.++++.-+
T Consensus 1071 ~~~~~~i~~l 1080 (1170)
T PRK07374 1071 QLIIDDCREI 1080 (1170)
T ss_pred EEEEeeeecH
Confidence 7788777644
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=1.3 Score=47.78 Aligned_cols=96 Identities=17% Similarity=0.230 Sum_probs=66.3
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeee-------cC---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-------AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R-------~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
.+|+||.. .+..|++.|+|.++- .. |+++=+.|-|.|| +|.+++..+.. +.+..|.|.
T Consensus 58 ~kI~di~~--------~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG--~ir~tlW~~~a--~~~~~g~l~ 125 (484)
T PRK14699 58 VKIENITP--------ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETG--KIKLTLWDNMA--DLIKAGKIK 125 (484)
T ss_pred ccHhHccC--------CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCC--eEEEEEecCcc--chhhhcCCC
Confidence 46667753 456799999999973 22 4666678999997 59999987542 123333499
Q ss_pred CCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCC
Q 011197 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (491)
Q Consensus 82 ~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~ 122 (491)
.||+|.|.|.++.-. ++.||.+.+.+++.++....+.+
T Consensus 126 ~GDvv~I~~~~r~~~---~g~el~~~~~~~i~~~~~~i~v~ 163 (484)
T PRK14699 126 AGQTLQISGYAKQGY---SGVEVNIGNNGVLTESEEEIDVA 163 (484)
T ss_pred CCCEEEEcceeccCC---CCceEEeCCCceeeccCcccccC
Confidence 999999999643322 34789888777777765444443
|
|
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.83 E-value=1.7 Score=40.59 Aligned_cols=74 Identities=24% Similarity=0.329 Sum_probs=54.9
Q ss_pred CCCcEEEEEEEEeeeec--CCCeEEEEEEcCCCccceEEEEeCCccchhh----hhhcCCCCCcEEEEEEEEEecCCCce
Q 011197 27 RVGLMIVVAGWVRTLRA--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ----VKSGLITTGASIWIQGNVVPSQGSKQ 100 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~--~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~----~~~~~L~~gd~V~V~G~v~~~~~~~~ 100 (491)
...+.|++.|-|.+.+. .+++.++.|.|++| +|-+++..+....-. ..- +..|++|.|+|.+..=+..
T Consensus 49 ~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtG--ti~vva~~~tee~l~~n~~~p~--~~eGe~veVtGrv~~yrG~-- 122 (204)
T COG4085 49 RLNEEVTVKGEVTADQNAIGGGIESLVLNDGTG--TITVVASRSTEETLELNEGMPV--TVEGEIVEVTGRVEEYRGS-- 122 (204)
T ss_pred eeeccceeeeEEEeeecccccceEEEEEECCCC--cEEEEEecChhHhHhhcCCCCc--cccCcEEEEEEEEEEeCCC--
Confidence 56778999999999984 47899999999996 599888876432111 113 6689999999998876543
Q ss_pred eEEEEEe
Q 011197 101 KVELKVN 107 (491)
Q Consensus 101 ~~el~~~ 107 (491)
.||.+.
T Consensus 123 -~eVkvn 128 (204)
T COG4085 123 -SEVKVN 128 (204)
T ss_pred -ceeecc
Confidence 455544
|
|
| >PRK13902 alaS alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.71 E-value=0.38 Score=55.79 Aligned_cols=60 Identities=22% Similarity=0.247 Sum_probs=40.3
Q ss_pred ceEEEEEEeCCeeEeechh-hhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCC-CccceeccHHHHHHHHcCCCCccc
Q 011197 401 TVAAMDMLVPRIGELIGGS-QREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRD 478 (491)
Q Consensus 401 ~~~~fdl~~~G~gEi~~G~-~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~p-p~~G~glGidRL~m~l~g~~~Ird 478 (491)
-.-|+|+++.|+ ||.|=- ++-++- .| . |- -+| ++---|+|+|||++++-|.+++=|
T Consensus 197 cGPcsEi~~~gl-EiwnlVFmqy~~~---------~g-~------~~-----~Lp~k~VDTG~GLER~~~v~qg~~t~yd 254 (900)
T PRK13902 197 AGPCFEVLVRGL-ELATLVFMQYKKD---------GN-R------YV-----EMPLKIVDTGYGLERIAWASQGTPTAYD 254 (900)
T ss_pred CCCceeeeeCCE-EeeeeeeeEEEcC---------CC-e------ee-----eCCCCeeeCCcCHHHHHHHHcCCCchHH
Confidence 345788888888 998863 221110 01 0 10 133 666689999999999999999999
Q ss_pred ccccC
Q 011197 479 AIPFP 483 (491)
Q Consensus 479 vi~FP 483 (491)
+ .|+
T Consensus 255 t-~f~ 258 (900)
T PRK13902 255 A-IFG 258 (900)
T ss_pred H-HHH
Confidence 8 564
|
|
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=90.31 E-value=1.3 Score=52.74 Aligned_cols=80 Identities=14% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.++.|+|+|.|..+|.. | .++|+.|.|.+|. +.+++-++ .|+... ..|..|.+|.|+|.+..... +.+
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~--~e~~vfp~--~~~~~~-~~l~~~~~~~v~g~v~~~~~--~~~ 1062 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGT--VEVIVFPK--VYEKYR-SLLNEDNIVLIKGRVSLRED--EEP 1062 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCc--EEEEECHH--HHHHHH-HHhccCCEEEEEEEEEecCC--Cce
Confidence 46789999999998752 3 4899999999974 99999864 344443 23999999999999975432 247
Q ss_pred EEEEeeEEEEcc
Q 011197 103 ELKVNKIVLVGK 114 (491)
Q Consensus 103 el~~~~i~ils~ 114 (491)
.+.++++.-+..
T Consensus 1063 ~~~~~~~~~l~~ 1074 (1151)
T PRK06826 1063 KLICEEIEPLVI 1074 (1151)
T ss_pred EEEEeeeecHhh
Confidence 888887765543
|
|
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.70 E-value=0.86 Score=47.61 Aligned_cols=117 Identities=16% Similarity=0.202 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeec------cCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITA------SDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQD 220 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~------~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (491)
-..+|..+.+.+.+-|..+|..+|+||+..- ..+|...-.+.+. |..+.
T Consensus 73 qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlk-------------------------DQGGE 127 (518)
T KOG1936|consen 73 QMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLK-------------------------DQGGE 127 (518)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehh-------------------------hcCCc
Confidence 4678999999999999999999999998653 3333331111110 00112
Q ss_pred ccCcccccccchhhHHHHHhc-cCC--ceEEEccccccCCC-CCCcccccccceeeEeccC-C----HHHHHHHHHHHHH
Q 011197 221 FFEKPAFLTVSGQLNAETYAT-ALS--NVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFA-D----LKDDMACATAYLQ 291 (491)
Q Consensus 221 ~f~~~~~L~~Spql~lql~~~-g~~--rvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~-~----~~~lm~~~e~li~ 291 (491)
-.....-|+++=- +++++ .+. +-|+|+++||.+.. -|.=-.-||.|+|+-.+.. + -.+++..+-+++.
T Consensus 128 l~SLRYDLTVPfA---RylAmNki~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~ 204 (518)
T KOG1936|consen 128 LCSLRYDLTVPFA---RYLAMNKITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILS 204 (518)
T ss_pred EEEeecccccHHH---HHHHHcccccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHh
Confidence 2233334555433 33333 222 45899999998853 1333457999999988861 2 2455555555443
|
|
| >TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.63 Score=54.02 Aligned_cols=28 Identities=36% Similarity=0.516 Sum_probs=24.7
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccC
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPFP 483 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~FP 483 (491)
++---|+|+|||++++-|.+|+=|+ .|+
T Consensus 235 k~VDTG~GLER~~~v~qg~~t~ydt-~f~ 262 (902)
T TIGR03683 235 KIVDTGYGLERFVWASQGTPTAYDA-IFP 262 (902)
T ss_pred CceecCCCHHHHHHHHcCCCchHHH-HHH
Confidence 6666899999999999999999998 664
|
This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases. |
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=89.57 E-value=1.2 Score=53.09 Aligned_cols=79 Identities=16% Similarity=0.346 Sum_probs=60.1
Q ss_pred CCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.+..|++.|.|.++|.. | .++|+.|.|.+| .+.+++-++ .|+.... .|..|++|.|+|.+.... +.+
T Consensus 976 ~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG--~iEvviFp~--~ye~~~~-~L~~g~iV~V~GkVe~~~---~~~ 1047 (1135)
T PRK05673 976 GGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSG--RIEVMLFSE--ALEKYRD-LLEEDRIVVVKGQVSFDD---GGL 1047 (1135)
T ss_pred cCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCC--cEEEEECHH--HHHHHHH-HhccCCEEEEEEEEEecC---CeE
Confidence 47889999999998752 2 499999999997 499999864 3444332 399999999999997642 357
Q ss_pred EEEEeeEEEEcc
Q 011197 103 ELKVNKIVLVGK 114 (491)
Q Consensus 103 el~~~~i~ils~ 114 (491)
.|.++++.-+.+
T Consensus 1048 qlii~~I~~L~~ 1059 (1135)
T PRK05673 1048 RLTAREVMDLEE 1059 (1135)
T ss_pred EEEEeecccHHH
Confidence 788887765544
|
|
| >PRK06461 single-stranded DNA-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=89.42 E-value=4.4 Score=35.68 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=56.5
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeee------c-C--CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR------A-Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R------~-~--gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
.++|+||... ...|.+.|.|.++- . . +++.-+.|.|.|| +|.+.+..+. ... |.
T Consensus 4 ~~kI~dL~~g--------~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG--~I~~tlW~~~-----a~~--l~ 66 (129)
T PRK06461 4 ITKIKDLKPG--------MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETG--RVKLTLWGEQ-----AGS--LK 66 (129)
T ss_pred ceEHHHcCCC--------CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCC--EEEEEEeCCc-----ccc--CC
Confidence 3677787632 25688899998532 1 2 2366688899997 4999887653 234 89
Q ss_pred CCcEEEEEE-EEEecCCCceeEEEEEee---EEEEcc
Q 011197 82 TGASIWIQG-NVVPSQGSKQKVELKVNK---IVLVGK 114 (491)
Q Consensus 82 ~gd~V~V~G-~v~~~~~~~~~~el~~~~---i~ils~ 114 (491)
.||+|.|.| .+..- . +.++|.+.+ +..+.+
T Consensus 67 ~GdvV~I~na~v~~f-~--G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 67 EGEVVEIENAWTTLY-R--GKVQLNVGKYGSISESDD 100 (129)
T ss_pred CCCEEEEECcEEeee-C--CEEEEEECCCEEEEECCc
Confidence 999999994 55443 2 368999885 555444
|
|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=89.27 E-value=1.3 Score=41.75 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhhCCcEEeecceeecc
Q 011197 153 ALAYATHKFFQENGFIWISSPIITAS 178 (491)
Q Consensus 153 ~i~~~iR~ff~~~~F~EV~TPiL~~~ 178 (491)
.+.+.+|++|...||.||-|..+++.
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~ 29 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSP 29 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCH
Confidence 46678899999999999999999875
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria | Back alignment and domain information |
|---|
Probab=89.22 E-value=6.7 Score=34.65 Aligned_cols=85 Identities=19% Similarity=0.342 Sum_probs=51.7
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEe--eeec---CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVR--TLRA---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASI 86 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~--~~R~---~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V 86 (491)
.+..++... + ...++.|+|.|+|. ++.. ...+.|. |.|+. +.+.|+.+...+. . .+.|.-|
T Consensus 37 ~t~se~~~~---~-~~~~~~vrv~G~V~~gSv~~~~~~~~~~F~-i~D~~--~~i~V~Y~G~~Pd-----~--F~eg~~V 102 (131)
T PF03100_consen 37 LTPSELAAE---P-QKVGRKVRVGGLVVEGSVEYDPDGNTLTFT-ITDGG--KEIPVVYTGPLPD-----L--FREGQGV 102 (131)
T ss_dssp E-TTTTTTT---S-T-TTSEEEEEEEEECTTEEE-TTSSEEEEE-EE-SS---EEEEEEES--CT-----T----TTSEE
T ss_pred cCHHHHhhc---c-ccCCceEEEeeEEccCCEEEcCCCCEEEEE-EEECC--cEEEEEECCCCCc-----c--ccCCCeE
Confidence 456666654 1 24799999999998 5543 3678885 78986 5699998875431 3 7789999
Q ss_pred EEEEEEEecCCCceeEEEEEeeEEEEccCCCC
Q 011197 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (491)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~ 118 (491)
-|+|.+... + ..+|+ +||.||+..
T Consensus 103 Vv~G~~~~~--g----~F~A~--~lL~Kcpsk 126 (131)
T PF03100_consen 103 VVEGRLGED--G----VFEAT--ELLAKCPSK 126 (131)
T ss_dssp EEEEEECCT--S----EEEEE--EEEETS---
T ss_pred EEEEEECCC--C----EEEEE--EEEeCCCCC
Confidence 999998322 2 23333 567788643
|
Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A. |
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=89.09 E-value=1.7 Score=51.44 Aligned_cols=78 Identities=15% Similarity=0.263 Sum_probs=59.0
Q ss_pred CCcEEEEEEEEeeeecC-----CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 28 VGLMIVVAGWVRTLRAQ-----SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~-----gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
.++.|+|+|.|..+|.. ++++|+.|.|.+|. +.+++-++. |+... ..|..|.+|.|+|.+.... +..
T Consensus 942 ~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~--~e~~vFp~~--y~~~~-~~l~~~~~~~v~G~v~~~~---~~~ 1013 (1107)
T PRK06920 942 KKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDE--MEAVVFPET--YIHFS-DKLQEGAIVLVDGTIELRN---HKL 1013 (1107)
T ss_pred CCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---CcE
Confidence 46789999999998652 25999999999974 999987653 55443 2399999999999997642 246
Q ss_pred EEEEeeEEEEc
Q 011197 103 ELKVNKIVLVG 113 (491)
Q Consensus 103 el~~~~i~ils 113 (491)
.+.++++.-+.
T Consensus 1014 ~~~~~~i~~l~ 1024 (1107)
T PRK06920 1014 QWIVNGLYPLE 1024 (1107)
T ss_pred EEEEeecccHH
Confidence 77777775443
|
|
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.41 E-value=1.2 Score=46.53 Aligned_cols=101 Identities=19% Similarity=0.167 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-CC---CCceeeeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA---GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g~---~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
-.+.+..|...+++.|..+||..|+||+|...++ + |. .+.|.++...
T Consensus 16 e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~-------------------------- 69 (390)
T COG3705 16 EARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDET-------------------------- 69 (390)
T ss_pred HHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCC--------------------------
Confidence 3456678888999999999999999999998764 1 11 2466553221
Q ss_pred cccCccccccc--chhhHH---HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccC
Q 011197 220 DFFEKPAFLTV--SGQLNA---ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA 277 (491)
Q Consensus 220 ~~f~~~~~L~~--Spql~l---ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~ 277 (491)
+..+-|+- .++.-. ..+...-.|+.+.|++||+.+... .-..||+|+=+|.-+.
T Consensus 70 ---g~~l~LRpD~T~pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~~-g~~~Ef~QaGiEllG~ 128 (390)
T COG3705 70 ---GGRLGLRPDFTIPVARIHATLLAGTPLRLSYAGKVFRAREGRH-GRRAEFLQAGIELLGD 128 (390)
T ss_pred ---CCeEEecccccHHHHHHHHHhcCCCCceeeecchhhhcchhcc-CcccchhhhhhHHhCC
Confidence 22222221 122222 233345679999999999983322 2335999998888655
|
|
| >PRK07217 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=88.26 E-value=6.9 Score=39.60 Aligned_cols=92 Identities=14% Similarity=0.212 Sum_probs=68.2
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeee--ecCCCeEE-EEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL--RAQSSVTF-IEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~--R~~gkl~F-i~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V 88 (491)
+.|+||.. .++.|+|.|+|.++ +.+.++.. -.|-|.|| +|..++..+.. ... |..|++|.+
T Consensus 73 ~kI~Di~~--------~~~~VsV~aKVl~l~e~~~~si~qvGllgDETG--~IkfT~W~~s~----~~~--leeGd~~rI 136 (311)
T PRK07217 73 VNIADIDE--------PEQWVDVTAKVVQLWEPSSDSIAQVGLLGDETG--TIKFTKWAKSD----LPE--LEEGKSYLL 136 (311)
T ss_pred eeeeecCC--------CCCcEEEEEEEEEecCCCCCceEEEEEEEcCCc--eEEEEEccCCC----CCc--ccCCCEEEE
Confidence 46777753 46779999999988 44566776 56789986 48888876421 224 999999999
Q ss_pred EEEEEecCCCceeEEEEEeeEEEEccCCCCCCC
Q 011197 89 QGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (491)
Q Consensus 89 ~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~ 121 (491)
.+..+..-.+ ..+|.+.+...+...+.+.++
T Consensus 137 ~na~v~ey~G--~~~lnlg~~t~I~~~de~IeV 167 (311)
T PRK07217 137 KNVVTDEYQG--RFSVKLNRTTSIEELDEDIEV 167 (311)
T ss_pred EeEEEeeECC--EEEEEeCCceEEEeCCCCccc
Confidence 9988876654 689999888888776654544
|
|
| >COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.62 E-value=0.4 Score=49.12 Aligned_cols=36 Identities=33% Similarity=0.655 Sum_probs=30.2
Q ss_pred HHHHHhcCCC-CccceeccHHHHHHHHcCCCCccccc
Q 011197 445 YLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAI 480 (491)
Q Consensus 445 yl~~~~~G~p-p~~G~glGidRL~m~l~g~~~Irdvi 480 (491)
-+.+.+||.| |---.|||+|||.|+|.|.++||..+
T Consensus 313 P~ALaeY~Id~pVMNLGlGVERlaMIl~g~~DVR~mv 349 (536)
T COG2024 313 PIALAEYGIDYPVMNLGLGVERLAMILHGADDVRSMV 349 (536)
T ss_pred hHHHHHcCCCCceeecchhHHHHHHHHhCchHHhhhh
Confidence 3455677876 88889999999999999999999753
|
|
| >PRK07279 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=85.47 E-value=3.6 Score=48.44 Aligned_cols=74 Identities=14% Similarity=0.341 Sum_probs=55.2
Q ss_pred CcEEEEEEEEeeeec---C---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeE
Q 011197 29 GLMIVVAGWVRTLRA---Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKV 102 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~---~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~ 102 (491)
++.+.+.|+|.++|. . +.++|+.|.|.+|. +.+++-++. |+... ..|..|.+|.|+|.+.... +..
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~--ie~~vFp~~--y~~~~-~~l~~~~~~~v~G~v~~~~---~~~ 955 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKK--LDVTLFPET--YRQYK-DELKEGKFYYLKGKIQERD---GRL 955 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCc--EEEEECHHH--HHHHH-HHhccCCEEEEEEEEEecC---Cee
Confidence 456889999988653 1 24999999999974 999998753 44443 2399999999999997642 257
Q ss_pred EEEEeeEE
Q 011197 103 ELKVNKIV 110 (491)
Q Consensus 103 el~~~~i~ 110 (491)
.+.++++.
T Consensus 956 ~l~~~~i~ 963 (1034)
T PRK07279 956 QMVLQQIQ 963 (1034)
T ss_pred EEEEeeee
Confidence 77777765
|
|
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
Probab=84.77 E-value=5.3 Score=33.65 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=48.4
Q ss_pred cEEEEEEEEee---eec------CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEE-ecCCC-
Q 011197 30 LMIVVAGWVRT---LRA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVV-PSQGS- 98 (491)
Q Consensus 30 ~~V~v~G~V~~---~R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~-~~~~~- 98 (491)
..++++|||.+ +|. .|++.-++|.|..| +.|++.+-.+.. +... ..|..|+++.+.|--+ .....
T Consensus 10 ~~~~I~~rV~~k~~~~~f~~~~~~g~~~~~~l~De~~-~~I~~t~~~~~~--~~f~-~~l~eG~vy~i~~~~V~~a~~~y 85 (104)
T cd04474 10 NKWTIKARVTNKSDIRTWSNARGEGKLFSFDLLDEDG-GEIRATFFNDAV--DKFY-DLLEVGKVYYISKGSVKVANKKF 85 (104)
T ss_pred CcEEEEEEEeeccccccccCCCCCcEEEEEEEEECCC-CEEEEEEehHHH--HHhh-cccccccEEEEeccEEeeccccC
Confidence 35899999985 332 26788899999954 479999986531 1121 2399999999997544 33221
Q ss_pred ---ceeEEEEEe
Q 011197 99 ---KQKVELKVN 107 (491)
Q Consensus 99 ---~~~~el~~~ 107 (491)
..+.||...
T Consensus 86 ~~~~~~yeI~f~ 97 (104)
T cd04474 86 NTLKNDYEITFN 97 (104)
T ss_pred CCCCCcEEEEEC
Confidence 235666654
|
RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct |
| >PLN02900 alanyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=84.49 E-value=7.2 Score=45.63 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.2
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdv 479 (491)
|+---|+|+|||++++-|.+|.=|+
T Consensus 239 ~~IDTGmGLERl~~vlqg~~snydt 263 (936)
T PLN02900 239 KHVDTGMGLERLASILQNKPSNYDT 263 (936)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchh
Confidence 5566899999999999999998887
|
|
| >cd04491 SoSSB_OBF SoSSB_OBF: A subfamily of OB folds similar to the OB fold of the crenarchaeote Sulfolobus solfataricus single-stranded (ss) DNA-binding protein (SSoSSB) | Back alignment and domain information |
|---|
Probab=84.14 E-value=10 Score=30.19 Aligned_cols=55 Identities=18% Similarity=0.217 Sum_probs=39.4
Q ss_pred CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE-EEEEecCCCceeEEEEEeeEE
Q 011197 45 SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSKQKVELKVNKIV 110 (491)
Q Consensus 45 gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~v~~~~~~~~~~el~~~~i~ 110 (491)
++..=+.|.|.+| .|.+++..... ... +..|++|.++ |.+..-. +.++|.+.+..
T Consensus 22 ~~~~~~~l~D~TG--~i~~~~W~~~~----~~~--~~~G~vv~i~~~~v~~~~---g~~ql~i~~~~ 77 (82)
T cd04491 22 GKVQSGLVGDETG--TIRFTLWDEKA----ADD--LEPGDVVRIENAYVREFN---GRLELSVGKNS 77 (82)
T ss_pred eEEEEEEEECCCC--EEEEEEECchh----ccc--CCCCCEEEEEeEEEEecC---CcEEEEeCCce
Confidence 5566678899996 59998886542 234 9999999999 7775543 35777776543
|
SSoSSB has a single OB fold, and it physically and functionally interacts with RNA polymerase. In vitro, SSoSSB can substitute for the basal transcription factor TBP, stimulating transcription from promoters under conditions in which TBP is limiting, and supporting transcription when TBP is absent. SSoSSB selectively melts the duplex DNA of promoter sequences. It also relieves transcriptional repression by the chromatin Alba. In addition, SSoSSB activates reverse gyrase activity, which involves DNA binding, DNA cleavage, strand passage and ligation. SSoSSB stimulates all these steps in the presence of the chromatin protein, Sul7d. SSoSSB antagonizes the inhibitory effect of Sul7d on reverse gyrase supercoiling activity. It also physically and functionally interacts with Mini-chromosome Maintenance (MCM), stimulating |
| >PRK01584 alanyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=84.13 E-value=9.1 Score=42.40 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=24.2
Q ss_pred CccceeccHHHHHHHHcCCCCccccccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
++-.-|+|+|||++++-|.+|+=|+=+|
T Consensus 224 k~IDTGmGLERl~~vlqg~~s~ydtdlf 251 (594)
T PRK01584 224 KCVDTGMGIERTIAFLQGKSSVYDTEAF 251 (594)
T ss_pred CceeCCcCHHHHHHHHcCCCCccchhhh
Confidence 6677999999999999999999888443
|
|
| >PRK00252 alaS alanyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=83.82 E-value=9.7 Score=44.32 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.2
Q ss_pred CccceeccHHHHHHHHcCCCCcccccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
+|---|+|+|||++++-|.+|.=|+=+
T Consensus 219 ~~iDTG~GlER~~~ilq~~~snydtd~ 245 (865)
T PRK00252 219 KNIDTGMGLERIAAVLQGVHSNYETDL 245 (865)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchhhh
Confidence 566689999999999999999888733
|
|
| >cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) | Back alignment and domain information |
|---|
Probab=83.43 E-value=22 Score=28.60 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=46.8
Q ss_pred EEEEEEEeee--ec--CCC-eEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC-CCcEEEEEEEEEecCCCceeEEEE
Q 011197 32 IVVAGWVRTL--RA--QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQGNVVPSQGSKQKVELK 105 (491)
Q Consensus 32 V~v~G~V~~~--R~--~gk-l~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~-~gd~V~V~G~v~~~~~~~~~~el~ 105 (491)
|+|.|-|-.+ |. .|+ +.-+.|.|.++ +|-|..-.+ ...+.... |+ .|+.|.|.|.+.-..= .++..+.
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~--Si~~K~F~~-~~~~~~~~--ik~~G~~v~v~G~v~~D~f-~~e~~~~ 75 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTS--SITVKKFLR-KDEKDKEE--LKSKGDWVRVRGKVQYDTF-SKELVLM 75 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCC--CEEEEEecc-CChhHHhh--cccCCCEEEEEEEEEEccC-CCceEEE
Confidence 6788988776 33 344 44578999985 466644332 11122445 89 9999999999976542 2367776
Q ss_pred EeeEE
Q 011197 106 VNKIV 110 (491)
Q Consensus 106 ~~~i~ 110 (491)
+..+.
T Consensus 76 i~~i~ 80 (82)
T cd04484 76 INDIE 80 (82)
T ss_pred eeeEE
Confidence 66553
|
Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.37 E-value=3.2 Score=47.58 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=24.9
Q ss_pred CccceeccHHHHHHHHcCCCCcccccccC
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPFP 483 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~FP 483 (491)
|+-==|+|+|||+..+-|.+++=|+.+|.
T Consensus 223 k~IDTGmGLERi~~vlQ~~~tnyd~dlf~ 251 (879)
T COG0013 223 KNIDTGMGLERIAAVLQGVPTNYDTDLFR 251 (879)
T ss_pred CCcccCccHHHHHHHHcCCCcchhhhhhH
Confidence 44557899999999999999999988774
|
|
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
Probab=83.00 E-value=9.8 Score=38.83 Aligned_cols=79 Identities=15% Similarity=0.268 Sum_probs=53.2
Q ss_pred CcEEEEEEEEeeeec----CCC-eEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEE
Q 011197 29 GLMIVVAGWVRTLRA----QSS-VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVE 103 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~----~gk-l~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~e 103 (491)
|+.|....-|.+... .|+ -.-+.|.|.|| +|.+.+....+ +.... +..|++|.|.|.+..-+. .+.
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG--~I~ak~W~~~~--~~~~~--~~~g~vv~v~G~v~~y~g---~~Q 81 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSG--DIEAKLWDVSP--EDEAT--YVPETIVHVKGDIINYRG---RKQ 81 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCc--EEEEEeCCCCh--hhHhh--cCCCCEEEEEEEEEEECC---cce
Confidence 444554555555431 243 55567889997 49998876432 12345 999999999999987644 467
Q ss_pred EEEeeEEEEccCC
Q 011197 104 LKVNKIVLVGKSD 116 (491)
Q Consensus 104 l~~~~i~ils~~~ 116 (491)
+.+.++.++.+..
T Consensus 82 l~i~~i~~~~~~e 94 (314)
T PRK13480 82 LKVNQIRLATEED 94 (314)
T ss_pred EEEEEeEECCCCC
Confidence 8888888877743
|
|
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=82.99 E-value=16 Score=27.56 Aligned_cols=64 Identities=19% Similarity=0.305 Sum_probs=41.0
Q ss_pred EEEEEeeeec--C--CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 34 VAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 34 v~G~V~~~R~--~--gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|.|.+.+. . ++..-+.+.|+++ .+.++.-.... +. .+. ++.|+.+.|.|++..... .+++.-
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g--~i~~~~F~~~~-~~-~~~--~~~G~~~~v~Gkv~~~~~---~~qi~~ 69 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTG--TLTLVFFNFQP-YL-KKQ--LPPGTRVRVSGKVKRFRG---GLQIVH 69 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCC--EEEEEEECCCH-HH-Hhc--CCCCCEEEEEEEEeecCC---eeEEeC
Confidence 5566665432 1 3456678899985 48887764211 11 234 999999999999987532 355543
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.96 E-value=8.8 Score=38.08 Aligned_cols=76 Identities=24% Similarity=0.347 Sum_probs=54.6
Q ss_pred cEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc-chhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 30 ~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~-~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
..|.+.|||.++-.+..-++++|-|++|. |=+....... .-.+... |..|.+|.|.|.++.-.+ ..+|.+.+
T Consensus 69 ~~v~~VGivr~~e~~~t~i~y~I~D~tg~--id~r~W~~~~~~~~e~~~--l~~~~yVkv~G~Lk~f~G---k~sl~~fk 141 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATNITYEIEDGTGQ--IDVRQWFHDNAESEEMPA--LETGTYVKVYGHLKPFQG---KKSLQVFK 141 (265)
T ss_pred EEEEEEEEEEeceecCcceEEEEecCccc--EEEEEeccccchhhhCcc--cccCcEEEeeecccCCCC---ceeEEEEe
Confidence 45789999999988877778899999974 6665554321 1122345 999999999999987654 35777666
Q ss_pred EEEE
Q 011197 109 IVLV 112 (491)
Q Consensus 109 i~il 112 (491)
|.-+
T Consensus 142 I~pv 145 (265)
T KOG3108|consen 142 IRPV 145 (265)
T ss_pred eeee
Confidence 6533
|
|
| >TIGR00344 alaS alanine--tRNA ligase | Back alignment and domain information |
|---|
Probab=82.55 E-value=5 Score=46.55 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.5
Q ss_pred CccceeccHHHHHHHHcCCCCcccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdv 479 (491)
||---|+|+|||++++-|.+|.=|+
T Consensus 213 ~~IDTGmGLERl~~vlqg~~snydt 237 (851)
T TIGR00344 213 KNIDTGMGLERFVAVLQGVPTNYDT 237 (851)
T ss_pred CeeecCcCHHHHHHHHcCCCCcchh
Confidence 5666899999999999999998887
|
The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP). |
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=82.34 E-value=8.3 Score=43.29 Aligned_cols=92 Identities=17% Similarity=0.259 Sum_probs=62.3
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeee---ec------CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
.++|++|... ..|..++|.|||.++ |. .|++.=+.|.|.+| .|++++-.+.. +.+.. |.
T Consensus 279 ~~pI~~L~~~------~~g~~~~I~grV~~~~~~R~f~~~~g~gkv~s~~l~D~tG--~IR~t~w~~~~--d~~~~--l~ 346 (637)
T PRK12366 279 IVNIEELTEF------EDGEEVDVKGRIIAISDKREVERDDRTAEVQDIELADGTG--RVRVSFWGEKA--KILEN--LK 346 (637)
T ss_pred ceeHHHCCcc------cCCCEEEEEEEEEecCCceEEEcCCCcEEEEEEEEEcCCC--eEEEEEeCchh--hhhcc--cC
Confidence 3556566432 156789999999986 32 27888899999996 59999987642 12234 77
Q ss_pred CCcEEEEEEEEEec---CCCceeEEEEEeeEEEEcc
Q 011197 82 TGASIWIQGNVVPS---QGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 82 ~gd~V~V~G~v~~~---~~~~~~~el~~~~i~ils~ 114 (491)
.|+++.|.+-..+. ..+.+++||.+..-..+.+
T Consensus 347 ~G~vy~is~~~vk~y~~~~~~~~~El~~~~~s~I~~ 382 (637)
T PRK12366 347 EGDAVKIENCKVRTYYDNEGEKRVDLNAGYSSEIIK 382 (637)
T ss_pred CCCEEEEecCEEeeccccCCCcCEEEEcCCceEEEe
Confidence 99999999865552 1233468988876554433
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.37 E-value=3.8 Score=48.32 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeec-cCCC-CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITA-SDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~-~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
.=.+|..+...+-+.|+++|++|++||-+.. ++|- +..++..+=+ .++.--..
T Consensus 931 ~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld-------------------------~sG~~v~L 985 (1351)
T KOG1035|consen 931 NNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLD-------------------------HSGDVVEL 985 (1351)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeec-------------------------CCCCEEEe
Confidence 4456788888899999999999999996554 3332 2223322211 11222234
Q ss_pred ccccccchhhHHHHHhcc---CCceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHHHHHHHHHHH
Q 011197 225 PAFLTVSGQLNAETYATA---LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQL 292 (491)
Q Consensus 225 ~~~L~~Spql~lql~~~g---~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~~~e~li~~ 292 (491)
|.-|++--- +.++.. .-|-|+|++|||-+. .+ |-.|++.+++-....+ -.+++.++-+++..
T Consensus 986 p~DLr~pfa---r~vs~N~~~~~Kry~i~rVyr~~~--~~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~ 1054 (1351)
T KOG1035|consen 986 PYDLRLPFA---RYVSRNSVLSFKRYCISRVYRPAI--HN-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTE 1054 (1351)
T ss_pred eccccchHH---HHhhhchHHHHHHhhhheeecccc--cC-CCccccceeeeEecCCCCccHHHHHHHHHHHHHH
Confidence 444443211 222211 246689999999987 24 9999999999877654 34566666665554
|
|
| >PRK07211 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=80.94 E-value=10 Score=40.98 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=57.3
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeec-----------CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-----------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~-----------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L 80 (491)
.+|++|.. -...|+|.|||.++-. .|++.=+.|-|.+| .|++++..+.... .... |
T Consensus 54 ~~I~dL~p--------g~~~vtI~aRV~~~~~~Rt~~~~~~~~eGkv~~v~l~DeTG--~Ir~TlW~d~ad~-~~~~--L 120 (485)
T PRK07211 54 NGIADIEP--------GMDEVKFLAKVLSIGDLRTFERDGEDEDGRVINVEVADETG--SVRVAFWDEQAVA-AEEE--L 120 (485)
T ss_pred ccHhhCCC--------CCCceEEEEEEeEccCceEEEeCCCCCCcEEEEEEEEcCCC--eEEEEEechHhHh-hhcc--c
Confidence 35666653 2356999999987522 26888899999997 5999998754211 1224 9
Q ss_pred CCCcEEEEEEEEEecCCCceeEEEEEeeE
Q 011197 81 TTGASIWIQGNVVPSQGSKQKVELKVNKI 109 (491)
Q Consensus 81 ~~gd~V~V~G~v~~~~~~~~~~el~~~~i 109 (491)
..|+++.|.|.+++. -+.+||.+..+
T Consensus 121 e~GdV~~I~~~~~~~---ys~~El~i~~v 146 (485)
T PRK07211 121 EVGQVLRIKGRPKDG---YNGLEVSVDKV 146 (485)
T ss_pred CCCCEEEEeceEecc---ccceEEEEeeE
Confidence 999999999987533 23578887754
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=80.79 E-value=9.4 Score=41.35 Aligned_cols=83 Identities=16% Similarity=0.172 Sum_probs=61.1
Q ss_pred CCcEEEEEEEEeee---e-----c--CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC
Q 011197 28 VGLMIVVAGWVRTL---R-----A--QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (491)
Q Consensus 28 ~~~~V~v~G~V~~~---R-----~--~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~ 97 (491)
.+..|+|.|+|.++ | + .|++.=+.|.|++| .|.+.+..+... .... +..||.|.|.+.-++...
T Consensus 285 ~~~~v~I~grV~~~~~~r~~~~~~Gseg~v~~~~l~DeTG--~Ir~T~W~~~a~--~~~~--i~~Gd~v~i~~~y~~~~~ 358 (484)
T PRK14699 285 DMNNINISGRVLDISEVRTFEKKDGSPGRVGNLLLGDSTG--KIRLTLWDEKTN--FLDE--IDFDETVEVLNAYSRENT 358 (484)
T ss_pred CCceeEEEEEEEEcCCCeEEEcCCCCeeEEEEEEEECCCC--eEEEEEeCcccc--cccc--cCCCceEEEEeEEEEecc
Confidence 45789999999965 2 1 25667788999997 499999765432 1234 889999998876555444
Q ss_pred CceeEEEEEeeEEEEccCC
Q 011197 98 SKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 98 ~~~~~el~~~~i~ils~~~ 116 (491)
..+.+||.+.+-.++.+|.
T Consensus 359 ~~~~~eL~~~~~t~I~~~~ 377 (484)
T PRK14699 359 FSQQVELNLGARGIIQKSE 377 (484)
T ss_pred CCccEEEEecCceeEeecC
Confidence 3457999999888888875
|
|
| >PRK07218 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=80.74 E-value=12 Score=39.77 Aligned_cols=83 Identities=16% Similarity=0.136 Sum_probs=57.5
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeee-----c---CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R-----~---~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~ 82 (491)
..+|+||.. .++.|.|.|+|.++- . .+.+.=+.|-|.|| +|.+++..+. . |..
T Consensus 58 ~~kI~Di~~--------~~~~V~v~~kVl~i~~rt~r~dg~~g~v~~~~igDeTG--~Ir~tlW~~~-------~--l~~ 118 (423)
T PRK07218 58 SKDIKELST--------DDKNVTVTGRVLTIGERSIRYQGDDHVIYEGILADETG--TISYTAWKDF-------G--LSP 118 (423)
T ss_pred CccHhhCCC--------CCceeEEEEEEEEecceeEecCCCceEEEEEEEECCCC--eEEEEEECCC-------C--CCC
Confidence 456777754 347799999999882 1 24566677778775 4777777632 3 999
Q ss_pred CcEEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 83 GASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 83 gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
||+|.|.+-..+.-.+ .++|.+.+-.-+..
T Consensus 119 Gdvv~I~na~vre~~g--~~el~ig~~t~I~~ 148 (423)
T PRK07218 119 GDTVTIGNAGVREWDG--RPELNIGESTTVSL 148 (423)
T ss_pred CCEEEEeccEeeccCC--ceEEeccCcceEEE
Confidence 9999999876665443 58888765544443
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.58 E-value=1.7 Score=45.73 Aligned_cols=45 Identities=29% Similarity=0.601 Sum_probs=32.2
Q ss_pred EEEEEEeCCeeE-eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHH
Q 011197 403 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQF 469 (491)
Q Consensus 403 ~~fdl~~~G~gE-i~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~ 469 (491)
--|+.|.+|.|+ |++|+ ||+.+.+++ |. ..|..||++|+|||+.+
T Consensus 274 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g~---------------~~pAvGfai~ldrl~~~ 319 (391)
T PRK12292 274 IVFEGYVDGVGNPIASGG----RYDDLLGRF---GR---------------ARPATGFSLDLDRLLEL 319 (391)
T ss_pred eEEEEEECCCCCcccCCc----chhhHHHHc---CC---------------CCCCceEEeeHHHHHhh
Confidence 458889888766 77776 455555444 21 23889999999999984
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=80.57 E-value=1.2 Score=46.80 Aligned_cols=48 Identities=19% Similarity=0.390 Sum_probs=33.7
Q ss_pred EEEEEEeCCeeE-eechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcC
Q 011197 403 AAMDMLVPRIGE-LIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATG 472 (491)
Q Consensus 403 ~~fdl~~~G~gE-i~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g 472 (491)
--|+.|.+|.|. |++|+ ||+.+.+++ | +-.|..|||+|+|||+.++-+
T Consensus 281 ~vFe~~~~~~~~~i~~GG----RYD~L~~~f---g---------------~~~pAvGfai~lerL~~~l~~ 329 (392)
T PRK12421 281 LVFAAYIPGRGQALARGG----RYDGIGEAF---G---------------RARPATGFSMDLKELLALQFL 329 (392)
T ss_pred CEEEEEECCCCCcccCCC----CccchhHhh---C---------------CCCCCceEEeeHHHHHhhccc
Confidence 358999998765 77777 344444333 1 124889999999999987744
|
|
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.48 E-value=7.8 Score=41.12 Aligned_cols=77 Identities=12% Similarity=0.199 Sum_probs=56.5
Q ss_pred CcEEEEEEEEeeeecC-CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEe
Q 011197 29 GLMIVVAGWVRTLRAQ-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVN 107 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~~-gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~ 107 (491)
=..|+|.|-|.+++.. .+-.|+.|.|... .|+|++-+.....-.+ . +..|+-|.|.|.+.-=+.. |.+.|.++
T Consensus 23 ~~~V~v~GEISn~t~~~sgH~YFtLKD~~A--~i~c~mf~~~~~~l~f-~--p~eG~~V~v~G~is~Y~~r-G~YQi~~~ 96 (440)
T COG1570 23 LGQVWVRGEISNFTRPASGHLYFTLKDERA--QIRCVMFKGNNRRLKF-R--PEEGMQVLVRGKISLYEPR-GDYQIVAE 96 (440)
T ss_pred CCeEEEEEEecCCccCCCccEEEEEccCCc--eEEEEEEcCcccccCC-C--ccCCCEEEEEEEEEEEcCC-CceEEEEe
Confidence 3569999999999864 2278889999984 5999998754211011 3 8899999999998764432 47888888
Q ss_pred eEEE
Q 011197 108 KIVL 111 (491)
Q Consensus 108 ~i~i 111 (491)
+++-
T Consensus 97 ~~~p 100 (440)
T COG1570 97 SMEP 100 (440)
T ss_pred cCCc
Confidence 7763
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 491 | ||||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 3e-53 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 5e-43 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 8e-39 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 3e-38 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 1e-37 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 2e-37 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 6e-36 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 7e-26 | ||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 2e-22 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 2e-22 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 2e-18 | ||
| 1nnh_A | 294 | Hypothetical Protein From Pyrococcus Furiosus Pfu-1 | 3e-08 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 5e-08 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 5e-08 | ||
| 3p8t_A | 294 | Crystal Structure Of The Archaeal Asparagine Synthe | 3e-07 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 2e-06 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 3e-05 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 7e-05 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 2e-04 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 3e-04 |
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964 Length = 294 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|3P8T|A Chain A, Crystal Structure Of The Archaeal Asparagine Synthetase A Length = 294 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 643 bits (1660), Expect = 0.0
Identities = 153/487 (31%), Positives = 233/487 (47%), Gaps = 62/487 (12%)
Query: 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD- 68
+K+ +VK + G + +AGWV T F+ + D + + +Q V+ +
Sbjct: 3 EKVYCQEVKP------ELDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNV 54
Query: 69 --AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPS-YPIQKKR 125
E +++ K + +S+ ++G V + + E+ V K+ ++ P ++
Sbjct: 55 VGEETFEKAKK--LGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEFPIPENPEQ 112
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
S E L HL RT A+ +V+ L A ++ ++G+ + PI+ EG
Sbjct: 113 ASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGAT 172
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F + +F+K A+L+ S QL E L
Sbjct: 173 LFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLEK 202
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305
V++ P+FRAE S T RHL EFW +E E A+ DL D M + V+ L+
Sbjct: 203 VWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELV----SYMVQRTLELR 258
Query: 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 365
K++++ F + E F ++SY +AI++L E WG DL ++
Sbjct: 259 KKEIEMFRDDLTT------LKNTEPPFPRISYDEAIDILQSKGVNVE----WGDDLGADE 308
Query: 366 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPR-IGELIGGSQREE 423
ER LTEE F P V YPK IKAFYM+++ +D R V A DML P GE+IGGSQRE+
Sbjct: 309 ERVLTEE-FDR-PFFVYGYPKHIKAFYMKEDPNDPRKVLASDMLAPEGYGEIIGGSQRED 366
Query: 424 RLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
+ L R+ E ++ Y WYLDLR YGSVPH+GFGLG ERLV + +++IR A FP
Sbjct: 367 DYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFP 426
Query: 484 RTPGSVE 490
RTP +
Sbjct: 427 RTPARLY 433
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 636 bits (1642), Expect = 0.0
Identities = 126/494 (25%), Positives = 208/494 (42%), Gaps = 67/494 (13%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
I D G ++ GW +R ++ F+E+ DGS QCV+
Sbjct: 17 PIVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFG 67
Query: 68 DAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQ--------KVELKVNKIVLVGKSDP-S 118
+ L T S+ I G + G +E++V + ++G+S
Sbjct: 68 KELCEPEKVKLL-TRECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDL 126
Query: 119 YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
I K S H+ R+ V ++R+ + + K++ +N F I P I +
Sbjct: 127 ENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKT 186
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
CEG F + +F +PA+LT S QL E+
Sbjct: 187 QCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216
Query: 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQV 298
+L + ++RAE S T RHLAE+ +E EL F +D + + C +
Sbjct: 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLV----CTVI 272
Query: 299 RYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK-KKFEFLVKW 357
++ + + N ++ + R F +++Y DAI+ + ++
Sbjct: 273 DNVMAVHGDKIRKMNPHLK---------LPTRPFKRMTYADAIKYCNDHGILNKDKPFEY 323
Query: 358 GCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQ-NDDGRTVAAMDMLVPRIGELI 416
G D+ + ER +T+E GCP+ + +P ++KAFYM + ++D+L+P +GE++
Sbjct: 324 GEDISEKPERQMTDEI--GCPIFMIHFPSKMKAFYMSKVPGHPDLTESVDLLMPGVGEIV 381
Query: 417 GGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 476
GGS R + L G LN D Y+WY R YGS PH G+GLG ERLV + G ++I
Sbjct: 382 GGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHI 441
Query: 477 RDAIPFPRTPGSVE 490
R +PR E
Sbjct: 442 RKVCLYPRYLERCE 455
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 634 bits (1637), Expect = 0.0
Identities = 121/474 (25%), Positives = 210/474 (44%), Gaps = 56/474 (11%)
Query: 23 EGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81
+ + + + GW+ +R Q S+ F + DG+ +Q ++ + +
Sbjct: 5 DLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDALT--VN 60
Query: 82 TGASIWIQGNVVPSQGSKQK---VELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAH 136
T ++ I G + K+ EL + ++G + P + + S + + H
Sbjct: 61 TECTVEIYGAIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRH 120
Query: 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSS 196
L R A+ R+R A A + F G++ ++ P + + EG F +
Sbjct: 121 LVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL------- 173
Query: 197 REAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAE 256
D+F + +FLT S QL ET L +V+ ++RAE
Sbjct: 174 -----------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAE 210
Query: 257 NSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWI 316
S T RHLAE+ +E E F L D M + C V +L + + I
Sbjct: 211 KSRTRRHLAEYAHVEAECPFITLDDLMEKIEELV----CDTVDRLLADE--EAKKLLEHI 264
Query: 317 EKGIIDRLSTVAERDFVQLSYTDAIELLIKA--KKKFEFLVKWGCDLQSEHERYLTEEAF 374
ER F+++ Y DAI+ L + + +F +G D+ ER++T+
Sbjct: 265 NPKF-----QPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI- 318
Query: 375 GGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLD 433
P++++ +P EIKAFYM+++ D ++D+L+P +GE++GGS R + + L
Sbjct: 319 -NKPILLNRFPSEIKAFYMQRDAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFK 377
Query: 434 ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487
++++ Y+WYLD R YG+ PH G+GLG ER + + T +IRD +PR G
Sbjct: 378 NVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVG 431
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 539 bits (1391), Expect = 0.0
Identities = 125/485 (25%), Positives = 208/485 (42%), Gaps = 61/485 (12%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSD 68
+ I DV + G ++ AGWV LR FI + D + L Q V+ +
Sbjct: 2 YRSHFIADVTP------EYDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKN 53
Query: 69 AEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKR 125
+ + + +T + I ++G V + + + +EL +I L+ K+ P+ K +
Sbjct: 54 SSAFGISQE--LTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 126 VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGE 185
+ + L R AV ++++ A + + GFI I +P I AS EG +
Sbjct: 112 ADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQ 171
Query: 186 QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245
F V +F K AFL S QL E A +
Sbjct: 172 LFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVER 201
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305
V+ P +RAE S+T HLAEF ++ E+AFAD D M L V+ I +
Sbjct: 202 VFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKIL----HNIVKTIKEEG 257
Query: 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 365
KE++ N + + +L YT+AIE+L + +G D+ +
Sbjct: 258 KEELKILNYEPPE---------VKIPIKRLKYTEAIEILRSKGYNIK----FGDDIGTPE 304
Query: 366 ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERL 425
R L EE + D+P + + FY + + ++ L+ + E++ GS R +
Sbjct: 305 LRILNEE-LKEDLYFIVDWPSDARPFYTKSKSENPELSESFDLIYKFLEIVSGSTRNHKR 363
Query: 426 EYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
E LE L + L +S+ ++L YG PHAGFG+G RL+ TG++++++ +PFPR
Sbjct: 364 EVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRD 423
Query: 486 PGSVE 490
+
Sbjct: 424 KKRLT 428
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 536 bits (1382), Expect = 0.0
Identities = 129/475 (27%), Positives = 213/475 (44%), Gaps = 60/475 (12%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKS-GLITTGA 84
+ G + VAGWV ++ + F+ + D + +Q + K + +
Sbjct: 13 ELNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPKLRSED 70
Query: 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ---KKRVSREFLRTKAHLRPRT 141
+ ++G V + +K E+ KIV++ +++ P+ K + + + R
Sbjct: 71 VVAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRR 130
Query: 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAE 201
A+ ++R+++ A FF ENGFI I +P I A+ EG E F +
Sbjct: 131 PEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM------------ 178
Query: 202 SPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTFRAENSNT 260
+FE+ AFL S QL + A+ L VY P FRAE NT
Sbjct: 179 ------------------KYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220
Query: 261 SRHLAEFWMIEPELAF-ADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKG 319
+RHL E W I+ E+AF D ++ M+ + ++ + Y+ ++ +++D N +E+
Sbjct: 221 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVA-HA---INYVREHNAKELDILNFELEEP 276
Query: 320 IIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGG 376
+ F ++SY A+E+L K+ WG D+ +E ER L + E
Sbjct: 277 ---------KLPFPRVSYDKALEILGDLGKEIP----WGEDIDTEGERLLGKYMMENENA 323
Query: 377 CPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL 435
+ YP E K FY M+ ++ A D+ R E+ G QRE R + L ++ E
Sbjct: 324 PLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEY-RGVEISSGGQREHRHDILVEQIKEK 382
Query: 436 KLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
LN +S+ +YL YG PH GFGLG ERL++ + NIR+ I FPR +
Sbjct: 383 GLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 437
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 494 bits (1274), Expect = e-174
Identities = 112/488 (22%), Positives = 199/488 (40%), Gaps = 76/488 (15%)
Query: 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE 70
++ + D+K VG + + G++ R + F+ + D S + +Q V
Sbjct: 2 RVLVRDLK-------AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLKL 52
Query: 71 GYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ----KKRV 126
+++ ++G VV + + +E++ ++ ++ + P++ + R
Sbjct: 53 ---------PLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRA 103
Query: 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQ 186
+ + L ++ R A +V+ AL ++ F I +P + + EG
Sbjct: 104 NPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGL 163
Query: 187 FCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246
F V D+FEK A+L S QL + V
Sbjct: 164 FGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFERV 193
Query: 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAF-ADLKDDMACATAYLQLYSCMQVRYILDNC 305
Y P +R E +TSRHL E+ ++ E+ F AD +D M A L + L+
Sbjct: 194 YEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALL----AEMLEEALNTA 249
Query: 306 KEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEH 365
+++ +D +L++ +A +L K++ G DL E
Sbjct: 250 GDEIRLLGATWP---------SFPQDIPRLTHAEAKRIL---KEELG--YPVGQDLSEEA 295
Query: 366 ERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQRE 422
ER L E E +G + V+ YP+ ++ FY +DG T + D+L + E+ G QR
Sbjct: 296 ERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTT-RSFDLLFRGL-EITSGGQRI 353
Query: 423 ERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 482
R E L L ++ +++ YL++ YG PH GF +G ERL Q G+ N+R A F
Sbjct: 354 HRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAF 413
Query: 483 PRTPGSVE 490
PR +
Sbjct: 414 PRDRHRLT 421
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 462 bits (1192), Expect = e-163
Identities = 72/359 (20%), Positives = 127/359 (35%), Gaps = 75/359 (20%)
Query: 135 AHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIP 194
+ + ++ + FF + GF W+ II+
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPIT--------------- 46
Query: 195 SSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET-YATALSNVYTFGPTF 253
+G+ + + LT S L+ + A L ++ P
Sbjct: 47 --------DPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNI 98
Query: 254 RAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDF 311
R E+ + RH EF ++ E+ A ++D M + R + +
Sbjct: 99 RLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVY-GL---FRKAEEWTGREFPK 154
Query: 312 FNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE 371
F Y++ +E ++G D ++ E
Sbjct: 155 TK-----------------RFEVFEYSEVLE-------------EFGSDEKASQEM---- 180
Query: 372 EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEG 430
P + + P+E FY R+ D D+++P GE+ G +RE E +
Sbjct: 181 ----EEPFWIINIPRE---FYDREVDG--FWRNYDLILPYGYGEVASGGEREWEYEKIVA 231
Query: 431 RLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488
++ + LN DS+ YL++ G + P AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 232 KIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGI 290
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 452 bits (1165), Expect = e-156
Identities = 111/514 (21%), Positives = 204/514 (39%), Gaps = 80/514 (15%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q ++ F+ + + L +Q ++ +
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASL--IQGLVKA 73
Query: 68 DAEGY---DQVKS-GLITTGASIWIQGNVVPSQ-----GSKQKVELKVNKIVLVGKSDPS 118
+ EG + VK G + + + ++G V + Q +E+ + KI + ++ +
Sbjct: 74 NKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEA 133
Query: 119 YPIQKKRVSR---------------EFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQ 163
PI + SR + + RT T A+ R++ + ++
Sbjct: 134 LPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLA 193
Query: 164 ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223
F + +P + + EG F V +F+
Sbjct: 194 TKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TYFK 223
Query: 224 KPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDD 282
A+L S Q N + A VY GP FRAENSNT RH+ EF ++ E+AF + +
Sbjct: 224 GKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHE 283
Query: 283 -MACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAI 341
+ + + +++ ++ + V+L+Y + I
Sbjct: 284 VLDTLSELF----VFIFSELPKRFAHEIELVRKQYP---VEEFKLPKDGKMVRLTYKEGI 336
Query: 342 ELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDYPKEIKAFYMRQNDD 398
E+L A K+ DL +E+E++L + + + I+ +P EI+ FY +
Sbjct: 337 EMLRAAGKEIG----DFEDLSTENEKFLGKLVRDKYDTDFYILDKFPLEIRPFYTMPDPA 392
Query: 399 GRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS--YWWYLDLRHYGSVPH 456
+ R E++ G+QR L+ R+ L+ + Y D YG PH
Sbjct: 393 NPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGCPPH 452
Query: 457 AGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
AG G+G ER+V F ++NIR A FPR P +
Sbjct: 453 AGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLR 486
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 398 bits (1023), Expect = e-134
Identities = 91/407 (22%), Positives = 151/407 (37%), Gaps = 51/407 (12%)
Query: 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVAR 149
+ K + + + + + +VS++ L RT T A+ R
Sbjct: 186 AKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFR 245
Query: 150 VRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPK 209
+++A +F F+ I +P + EG F V
Sbjct: 246 IQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEV-------------------- 285
Query: 210 TKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFW 268
+F++ A+L S QL + V+ GP FRAENSNT RHL EF
Sbjct: 286 ----------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFE 335
Query: 269 MIEPELAFADLKDD-MACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTV 327
++ E+ + + + I +++ +
Sbjct: 336 GLDIEMEIVENYHECIDVMEKLF----TFIFDEIPKRFPDELKVIRKQYPF------EDL 385
Query: 328 AERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---EAFGGCPVIVSDY 384
R F++L+Y +AIE+L + + D + E L E + I+ +
Sbjct: 386 IYRPFLRLTYKEAIEMLRASGETIG----DYDDFTTPQEVKLGELIKAKYNTDFYILDKF 441
Query: 385 PKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYW 443
P I+ FY M DD + D+ V E+ G+QR E+L R E ++ +
Sbjct: 442 PAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEITSGAQRIHDPEFLMKRCIEKGVDPATLK 500
Query: 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
Y++ +GS PHAG G+G ER+ G+ NIR FPR P +
Sbjct: 501 DYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 6e-08
Identities = 69/476 (14%), Positives = 134/476 (28%), Gaps = 137/476 (28%)
Query: 94 PSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSRE----FLRTKA-HLRPRTNTF---- 144
PS ++ +E + +++ +D K VSR LR LRP N
Sbjct: 105 PSMMTRMYIE-QRDRL----YNDNQ-VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 145 -GA-----VARVRNALAYATHKFFQENGFIWIS-SPIITASDCEGAGEQFCVTTLIPSSR 197
G+ V L+Y + W++ + ++ + P+
Sbjct: 159 LGSGKTWVALDV--CLSYKVQCKM-DFKIFWLNLKNCNSPETVLEMLQKLL-YQIDPNWT 214
Query: 198 EAAESPVDAIPKTKDGLIDWSQDFFEKP-------------------AF-------LT-- 229
++ I + + + AF LT
Sbjct: 215 SRSDHS-SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 230 ---VSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIE----PELA------- 275
V+ L+A T + ++ T L ++ P
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329
Query: 276 ---FADLKDDMACATAYLQLYSCMQVRYILDNCKEDMD-------F-----F--NTWIEK 318
A+ D + +C ++ I+++ ++ F F + I
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 319 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE-HERYLTEEAFGGC 377
++ + + + +D + ++ K K + K + YL +
Sbjct: 390 ILLSLI-------WFDVIKSDVMVVVNKLHKYS-LVEKQPKESTISIPSIYLELK----V 437
Query: 378 PV---------IVSDYPKEIKAFYMRQNDDGRTVAAMDM-LVPRIGELIGGSQREERLE- 426
+ IV Y K F + D +D IG + + ER+
Sbjct: 438 KLENEYALHRSIVDHY-NIPKTF----DSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 427 ----YLEGRLDELKLNRDSYWWY---------LDLRHYGS--VPHAGFGLGFERLV 467
+L+ R E K+ DS W L+ Y + +ERLV
Sbjct: 493 FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK---YERLV 545
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
YG+ PH G G +RL+ TG +IR+ I FP+
Sbjct: 517 YGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKN 551
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 6e-05
Identities = 35/169 (20%), Positives = 69/169 (40%), Gaps = 17/169 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L +Q V + Y + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVR 70
Query: 88 IQGNVVP-SQGSKQ----KVELKVNKIVLVGKSD-PSYPIQKKRVSREFLRTKAHLR--- 138
+G V + + + +VE++++ + ++ ++ P +P+ E LR
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKY 130
Query: 139 ----PRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGA 183
R R+R+ + A F GF+ + +P +T S EGA
Sbjct: 131 RYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGA 179
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 451 YGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485
YG+ PHAG G +RL TG +NIRD I FP+T
Sbjct: 523 YGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKT 557
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 45/264 (17%), Positives = 77/264 (29%), Gaps = 60/264 (22%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNC 305
V+ +FR E H EF M+E D+ M L ++ +LD
Sbjct: 112 VFQLCRSFRNEEMGR-YHNPEFTMLEWYRPHYDMYRLMN-EVDDL-------LQQVLDCP 162
Query: 306 K-EDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQS 363
E + + ++ ID + T E+ K + D L
Sbjct: 163 AAESLSYQQAFLRYLEID---------PLSADKTQLREVAAKLDLSNVADTEEDRDTLLQ 213
Query: 364 EH-ERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE----LIGG 418
+ P V +P + +D R+ E G
Sbjct: 214 LLFTFGVEPNIGKEKPTFVYHFPASQASLAQISTED-----------HRVAERFEVYYKG 262
Query: 419 S--------------QREERLE-----YLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGF 459
Q++ R E L + ++++ ++ G +G
Sbjct: 263 IELANGFHELTDAREQQQ-RFEQDNRKRAARGLPQHPIDQN----LIEALKVGMPDCSGV 317
Query: 460 GLGFERLVQFATGVENIRDAIPFP 483
LG +RLV A G E + + I F
Sbjct: 318 ALGVDRLVMLALGAETLAEVIAFS 341
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 68/280 (24%), Positives = 104/280 (37%), Gaps = 78/280 (27%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA-----CATAYLQLYSCMQVRY 300
VY G FR E +T RH EF M+E A+AD +D M A ++ +++Y
Sbjct: 245 VYEIGRVFRNEGIST-RHNPEFTMLELYEAYADFRDIMKLTENLIAHIATEVLGTTKIQY 303
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGC 359
+ +D W ++D + DF Q+S +A EL + + + +G
Sbjct: 304 G----EHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFG- 358
Query: 360 DLQSEHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVP 410
++ E F P + +P EI A ++N D P
Sbjct: 359 --------HIVNEFFEQKVEDKLIQPTFIYGHPVEISPLA---KKNPDD----------P 397
Query: 411 RIGE----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYW 443
R + I G QR+ E L+ R +DE D
Sbjct: 398 RFTDRFELFIVGREHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDE-----D--- 449
Query: 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
+L+ YG P G G+G +RLV T +IRD + FP
Sbjct: 450 -FLEALEYGMPPTGGLGIGVDRLVMLLTNSPSIRDVLLFP 488
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 8e-05
Identities = 55/280 (19%), Positives = 83/280 (29%), Gaps = 73/280 (26%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA-----CATAYLQLYSCMQVRY 300
V+ FR E + RH EF M+E A+ D + M A + ++Y
Sbjct: 275 VFEINRNFRNEGVSP-RHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDALGTATIQY 333
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKK-FEFLVKWGC 359
++D + I + A +D L + K+ +
Sbjct: 334 Q----GRELDLAQPFHRLTITQAIQKYAPSYTDGQL-SDDAFLRSELKRLGVDVTQPAFL 388
Query: 360 DLQSEHERYLTEEAFGGC-------PVIVSDYPKEIK--AFYMRQNDDGRTVAAMDMLVP 410
+ L F P + DYP E+ A R++D
Sbjct: 389 NAGIGA---LQLALFEETAEAQLWEPTFIIDYPIEVSPLA---RESDTV----------A 432
Query: 411 RIGE----LIGGS--------------QREERLEYLEGR---------LDELKLNRDSYW 443
I E I G Q + +E + D D
Sbjct: 433 GITERFELFITGREIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDA-----D--- 484
Query: 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
Y+ YG P G G+G +RLV T IRD + FP
Sbjct: 485 -YIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFP 523
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 61/275 (22%), Positives = 93/275 (33%), Gaps = 67/275 (24%)
Query: 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMA-----CATAYLQLYSCMQVRY 300
V+ FR E + RH EF M+E +A+AD D + T ++ +V Y
Sbjct: 254 VFEINRNFRNEGISV-RHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTY 312
Query: 301 ILDNCKEDMDFFNTWIEKGIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGC 359
+ DF + + + + + E D L DA + L + WG
Sbjct: 313 G----EHVFDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGL 367
Query: 360 DLQSEHERYLTEEAFGGC-------PVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRI 412
+ E F P +++YP E+ R + + + R
Sbjct: 368 -------GRIVTEIFDEVAEAHLIQPTFITEYPAEVSPLARRNDVNPE-------ITDRF 413
Query: 413 GEL-IGGS--------------QREERLEYLEGR---------LDELKLNRDSYWWYLDL 448
E IGG Q E E + + DE D Y+
Sbjct: 414 -EFFIGGREIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDE-----D----YVTA 463
Query: 449 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
YG P AG G+G +R++ T IRD I FP
Sbjct: 464 LEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFP 498
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 491 | |||
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.9 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 99.86 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 99.73 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 99.66 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.55 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 99.5 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 99.36 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 98.96 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 98.48 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.45 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.44 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.43 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 98.42 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 98.41 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 98.11 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 98.11 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 98.08 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 98.06 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.05 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 98.02 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 97.97 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 97.94 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 97.92 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 97.89 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 97.85 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 97.82 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.81 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 97.81 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.8 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 97.79 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.78 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.74 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.71 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.69 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.67 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 97.65 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.65 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.59 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.57 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.55 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.55 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.52 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 97.43 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.42 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.37 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.34 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.34 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.32 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 96.6 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 96.46 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 96.42 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 96.38 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 96.38 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 96.28 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 96.23 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 96.09 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 95.98 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 95.78 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 95.7 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 95.69 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 95.49 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 95.43 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 95.11 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 94.54 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 93.89 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 93.7 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 93.2 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 92.92 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 92.76 | |
| 4gop_A | 114 | Putative uncharacterized protein; OB fold, ssDNA b | 92.65 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 91.62 | |
| 3kdf_A | 121 | Replication protein A 14 kDa subunit; wheat GERM c | 91.54 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 90.28 | |
| 2pi2_E | 142 | Replication protein A 14 kDa subunit; FULL-length | 90.19 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 89.97 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 88.87 | |
| 3hy0_A | 441 | Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 87.03 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 81.2 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 80.34 |
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-105 Score=833.55 Aligned_cols=424 Identities=29% Similarity=0.497 Sum_probs=381.4
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcE
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGAS 85 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~ 85 (491)
.++++|++|... +.|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..++.++. |+.||+
T Consensus 2 ~rt~~~~~l~~~------~~g~~V~v~Gwv~~~R~~g~~~Fi~LrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~ 71 (438)
T 3nem_A 2 YRTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDGI--VQITAPKKKVDPELFKLIPK--LRSEDV 71 (438)
T ss_dssp CCSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEEETTTSCHHHHHHGGG--CCTTCE
T ss_pred ceEEEHHHcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCCcCCHHHHHHHhc--CCCCCE
Confidence 368999999865 68999999999999999999999999999974 999999764 23566777 999999
Q ss_pred EEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccc---cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHH
Q 011197 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFF 162 (491)
Q Consensus 86 V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~---~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff 162 (491)
|.|+|+|+++++..|++||+|++++|||+|..++|++.+. ++.+.++++||||+|++.++++|++||++++++|+||
T Consensus 72 V~V~G~v~~~~~~~~~~el~~~~i~vl~~~~~~lP~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~Rs~i~~~iR~f~ 151 (438)
T 3nem_A 72 VAVEGVVNFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVKAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFF 151 (438)
T ss_dssp EEEEEEEEECTTSTTSEEEEEEEEEEEECBCSSCSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEEEEEecCCCCCCCCccccccCCHHHHhhchHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887779999999999999998779988654 6788888999999999999999999999999999999
Q ss_pred hhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhc
Q 011197 163 QENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYAT 241 (491)
Q Consensus 163 ~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~ 241 (491)
.++||+||+||+|++++|||+++.|++ +||++++||+|||||||| ++++
T Consensus 152 ~~~gF~EVeTPiL~~~~~eg~~~~f~~------------------------------~~~~~~~yL~~Spql~~q~l~~~ 201 (438)
T 3nem_A 152 HENGFIEIHTPKIIATATEGGTELFPM------------------------------KYFEEDAFLAQSPQLYKQIMMAS 201 (438)
T ss_dssp HHTTCEECCCCSEESSCSSCSSSCCEE------------------------------EETTEEEEECSCSHHHHHHGGGT
T ss_pred HHCCcEEEeCCEEecCCCCCCccceeE------------------------------eeCCccEEEecChHHHHHHHHhc
Confidence 999999999999999999999999976 567899999999999997 6679
Q ss_pred cCCceEEEccccccCCCCCCcccccccceeeEeccCC-HHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchh
Q 011197 242 ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGI 320 (491)
Q Consensus 242 g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~ 320 (491)
|++||||||||||||+++++||+|||||||||++|+| ++|+|+++|+||++ +++.+.+.+..++.+.+..
T Consensus 202 g~~rvf~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~----~~~~v~~~~~~~l~~~~~~----- 272 (438)
T 3nem_A 202 GLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAH----AINYVREHNAKELDILNFE----- 272 (438)
T ss_dssp TCCEEEEEEEEECCCSSCCTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHH----HHHHHHHHCHHHHHHTTCC-----
T ss_pred CCCceEEEcceEECCCCCCcccccceeeeeeeeccCccHHHHHHHHHHHHHH----HHHHHHhhhhhhHhhcccc-----
Confidence 9999999999999999988999999999999999999 99999999999999 9998887765555443321
Q ss_pred hhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccc---cCccEEEEeCCCCCcccccccCC
Q 011197 321 IDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQND 397 (491)
Q Consensus 321 ~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~---~~~p~~i~~~P~~~~pf~~~~~~ 397 (491)
+ +....||+|+||.||++++++.|.+ +.||.+++.++|++|.+.+. ..+|+||+|||.+++|||++.++
T Consensus 273 ---l-~~~~~pf~rity~eai~~l~~~g~~----~~~~~dl~~~~e~~l~~~~~~~~~~~p~fi~~yP~~~~pfy~k~~~ 344 (438)
T 3nem_A 273 ---L-EEPKLPFPRVSYDKALEILGDLGKE----IPWGEDIDTEGERLLGKYMMENENAPLYFLYQYPSEAKPFYIMKYD 344 (438)
T ss_dssp ---C-CCCCSSCCEEEHHHHHHHHHHTTCC----CCTTSCCCHHHHHHHHHHHHHHHCCSEEEEESCBGGGSCTTBCBCT
T ss_pred ---c-ccCCCCceEEEHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHHHhhhhcCCCCEEEECCchhhCccccccCC
Confidence 1 1245689999999999999988754 46888999999998876442 13899999999999999876654
Q ss_pred -CCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCc
Q 011197 398 -DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 476 (491)
Q Consensus 398 -~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~I 476 (491)
++.+++|||||++| +||+|||+|++|+++|.+++++.|++++.++|||+|++||+|||||||||||||+|++||.+||
T Consensus 345 ~~p~~~~rfdL~~~G-~Ei~nG~~el~d~~~l~~r~~~~g~~~~~~~~yl~a~~~G~pP~~G~GlGidRLvm~l~g~~~I 423 (438)
T 3nem_A 345 NKPEICRAFDLEYRG-VEISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNI 423 (438)
T ss_dssp TSTTBBSEEEEEETT-EEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCG
T ss_pred CCCCceEEEEEEECC-EEEEeCeeecCCHHHHHHHHHHcCCChhHHHHHHHHHHcCCCCceEEEEhHHHHHHHHhCCCcH
Confidence 45789999999999 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCC
Q 011197 477 RDAIPFPRTPGSVE 490 (491)
Q Consensus 477 rdvi~FPr~~~~~~ 490 (491)
|||++|||+++||.
T Consensus 424 rdvi~FPr~~~rl~ 437 (438)
T 3nem_A 424 REVILFPRDRRRLT 437 (438)
T ss_dssp GGGSSSCCCSSCCC
T ss_pred HHcccCCCCccCCC
Confidence 99999999999984
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-104 Score=831.19 Aligned_cols=425 Identities=30% Similarity=0.529 Sum_probs=364.4
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc-cchhhhhhcCCCCCcEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIW 87 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~-~~~~~~~~~~L~~gd~V~ 87 (491)
.++.|+++. ++.|++|+|+|||+++|++| +++|++|||++|. ||||++++. .....+.. |+.||+|.
T Consensus 18 ~~~~i~~~~-------~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~--iQvv~~~~~~~~~~~~~~--l~~g~~V~ 86 (456)
T 3m4p_A 18 IVCNIRDAA-------GLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGY--CQCVIFGKELCEPEKVKL--LTRECSLE 86 (456)
T ss_dssp CCEECCSTT-------CCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCE--EEEEEESTTTTCHHHHTT--CCTTCEEE
T ss_pred eEEEhhhhh-------hcCCCEEEEEEEEEEEecCCCceEEEEEEeCCcc--EEEEEecccchhhHHhhc--CCCccEEE
Confidence 357899983 36899999999999999995 6999999999974 999999743 22222445 99999999
Q ss_pred EEEEEEecCCCc--------eeEEEEEeeEEEEccCCCCCCCC-ccccChhhhccCccccCCChHHHHHHHHHHHHHHHH
Q 011197 88 IQGNVVPSQGSK--------QKVELKVNKIVLVGKSDPSYPIQ-KKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYAT 158 (491)
Q Consensus 88 V~G~v~~~~~~~--------~~~el~~~~i~ils~~~~~~P~~-~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~i 158 (491)
|+|+|++++.+. |++||+|++++||++|+.+.|-. .+.++.++++++||||+|++.++++|++||++++++
T Consensus 87 V~G~v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~~~~~~e~r~~~R~LdlR~~~~~~~lr~Rs~i~~~i 166 (456)
T 3m4p_A 87 ITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYF 166 (456)
T ss_dssp EEEEEECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSCTTCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred EEeEEEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCcccccccCCHHHHhhchHHhhhcHHHHHHHHHHHHHHHHH
Confidence 999999886532 78999999999999997433211 234677888899999999999999999999999999
Q ss_pred HHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHH
Q 011197 159 HKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238 (491)
Q Consensus 159 R~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql 238 (491)
|+||.++||+||+||+|++++|||++++|.+ +||++++||+||||||||+
T Consensus 167 R~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~------------------------------~~~~~~~~L~~SpqL~lq~ 216 (456)
T 3m4p_A 167 RKYYHDNHFTEIQPPTIVKTQCEGGSTLFKL------------------------------QYFNEPAYLTQSSQLYLES 216 (456)
T ss_dssp HHHHHHTTCEECCCCSEEC------CCCCEE------------------------------EETTEEEEECSCCHHHHHT
T ss_pred HHHHHhCCCEEEeCCeeecCCCCCccccccc------------------------------cccCCCcccccCHHHHHHH
Confidence 9999999999999999999999999999865 7899999999999999996
Q ss_pred HhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcc
Q 011197 239 YATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEK 318 (491)
Q Consensus 239 ~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~ 318 (491)
+++|++||||||||||||+++|+||||||||||||++|+|++|+|+++|+||++ +++.+.+.+...+.....
T Consensus 217 l~~g~~rVyeig~~FR~E~~~t~rH~pEFtmlE~e~af~d~~d~m~~~E~li~~----~~~~v~~~~~~~~~~~~~---- 288 (456)
T 3m4p_A 217 VIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCT----VIDNVMAVHGDKIRKMNP---- 288 (456)
T ss_dssp THHHHSSEEEEEEEECCCSCCCSSCCSEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCT----
T ss_pred HHhccCcEEEEEhheecCCCCCCcchHHHHHhHHHHhcCCHHHHHHHHHHHHHH----HHHHHhhhhhhhHhhcCc----
Confidence 667899999999999999998999999999999999999999999999999999 888877654322111110
Q ss_pred hhhhhhhhhhcCCCccccHHHHHHHHHHhccccc-cccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC
Q 011197 319 GIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFE-FLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND 397 (491)
Q Consensus 319 ~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~-~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~ 397 (491)
+ + +....||+|+||.||++++++.|++.+ ....||.+++.++|++|.+.+ . +|+||+|||++++|||++.++
T Consensus 289 ~----~-~~~~~pf~rity~eAi~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~P~fv~~yP~~~~pfy~k~~~ 361 (456)
T 3m4p_A 289 H----L-KLPTRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTDEI-G-CPIFMIHFPSKMKAFYMSKVP 361 (456)
T ss_dssp T----C-CCCCSSCEEEEHHHHHHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCEET
T ss_pred c----c-ccCCCCCeEeeHHHHHHHHHHcCCCccccCcchHHHHHHHHHHHHHHHh-C-ceEEEECCCchhCccccccCC
Confidence 0 0 123568999999999999998887543 345789999999999999864 4 899999999999999877654
Q ss_pred -CCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCc
Q 011197 398 -DGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENI 476 (491)
Q Consensus 398 -~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~I 476 (491)
|+.+++|||||++|+|||+|||+|++|+++|.+++++.|++++.|+|||++++||+|||||||||||||+|++||.+||
T Consensus 362 ~dp~~~~rfdL~~~G~gEi~~G~~r~~d~~~l~~r~~~~g~~~~~~~~yld~~~~G~pP~gG~GlGidRLvm~ltg~~~I 441 (456)
T 3m4p_A 362 GHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHI 441 (456)
T ss_dssp TEEEEECEEEEEETTTEEEEEEEEBCCCHHHHHHHHHTTTCCCGGGHHHHGGGTSSCCCEEEEEEEHHHHHHHHHTCSCG
T ss_pred CCCCeeEEEEEEeCCceEEccceeecCCHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCcccEEEEcHHHHHHHHcCCccH
Confidence 4568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCC
Q 011197 477 RDAIPFPRTPGSVE 490 (491)
Q Consensus 477 rdvi~FPr~~~~~~ 490 (491)
|||++|||+|+||.
T Consensus 442 rdvi~FPr~~~r~~ 455 (456)
T 3m4p_A 442 RKVCLYPRYLERCE 455 (456)
T ss_dssp GGGSSSCBBTTBCC
T ss_pred HHeeccCCCCCCCC
Confidence 99999999999985
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-101 Score=809.21 Aligned_cols=420 Identities=30% Similarity=0.571 Sum_probs=363.5
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc-cchhhhhhcCCCCCcEEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~-~~~~~~~~~~L~~gd~V~V~G 90 (491)
+|+|+. ++.|++|+|+|||+++|++| +++|++|||++|. ||||++++. ..|+.. . |+.||+|.|+|
T Consensus 2 ~i~~~~-------~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~--iQvv~~~~~~~~~~~~-~--l~~~~~v~v~G 69 (435)
T 2xgt_A 2 KIRDLV-------KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQTYDAL-T--VNTECTVEIYG 69 (435)
T ss_dssp CGGGGG-------GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCE--EEEEEEGGGGSSHHHH-H--CCTTCEEEEEE
T ss_pred chhhhh-------hcCCCEEEEEEEEEEecccCCCcEEEEEEECCce--EEEEECCcchhHHHHh-c--CCCCCEEEEEE
Confidence 466664 26899999999999999995 7999999999974 999998542 234433 6 99999999999
Q ss_pred EEEecC---CCceeEEEEEeeEEEEccCCCC--CCCCccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhC
Q 011197 91 NVVPSQ---GSKQKVELKVNKIVLVGKSDPS--YPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (491)
Q Consensus 91 ~v~~~~---~~~~~~el~~~~i~ils~~~~~--~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (491)
+|++++ +++|++||+|++++||+++.+. +|++++.++.+.++++||||+|++.++++|++||++++++|+||.++
T Consensus 70 ~v~~~~~~~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~~~~~e~r~~~R~Ldlr~~~~~~~~r~Rs~i~~~iR~ff~~~ 149 (435)
T 2xgt_A 70 AIKEVPEGKEAPNGHELIADFWKIIGNAPPGGIDNVLNEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNA 149 (435)
T ss_dssp EEEECC------TTEEEEEEEEEEEECCCTTHHHHHCC--CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEecCCCcCCCCcEEEEEEEEEEeecCCCcccccccccCCCHHHHhhCeeeeecCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999977 4457899999999999986432 67777778888888999999999999999999999999999999999
Q ss_pred CcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCc
Q 011197 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (491)
Q Consensus 166 ~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~r 245 (491)
||+||+||+|++++++|+++.|.+ +||++++||+||||||||++++|++|
T Consensus 150 gFlEVeTPiL~~s~~eG~~~~F~~------------------------------~~~g~~~~L~~SpqLylq~l~~g~~r 199 (435)
T 2xgt_A 150 GYVEVAPPTLVQTQVEGGSTLFNL------------------------------DYFGEQSFLTQSSQLYLETCIPTLGD 199 (435)
T ss_dssp TCEECCCCSEESCCSSCTTSCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHCS
T ss_pred CCEEEECCeEeeccCCCchhceee------------------------------ccCCcccccCCChHHHHHHhhhccCc
Confidence 999999999999999999999965 67899999999999999866678999
Q ss_pred eEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhh
Q 011197 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLS 325 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~ 325 (491)
|||||||||||+++++||+|||||||||++|+|++|+|+++|+||++ +++.+.+.+..+ .. .+.+.
T Consensus 200 vfeIg~~FR~E~~~t~RH~~EFT~lE~e~af~d~~d~m~~~E~li~~----~~~~v~~~~~~~-~~---------~~~~~ 265 (435)
T 2xgt_A 200 VFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCD----TVDRLLADEEAK-KL---------LEHIN 265 (435)
T ss_dssp EEEEEEEECCCSSCCTTCCSEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHHTSHHHH-HH---------HHHHS
T ss_pred eEEEecceecCCCCccccccceeEEEEEEecCCHHHHHHHHHHHHHH----HHHHHhccccch-hh---------hhhcc
Confidence 99999999999998899999999999999999999999999999999 888876543110 00 00111
Q ss_pred h---hhcCCCccccHHHHHHHHHHhcccccc--ccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CC
Q 011197 326 T---VAERDFVQLSYTDAIELLIKAKKKFEF--LVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DG 399 (491)
Q Consensus 326 ~---~~~~~~~~it~~ea~~~l~~~~~~~~~--~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~ 399 (491)
. ....||+|+||.||++++++.++..+. ...||.++...+|++|.+.+ . +|+||+|||.+++|||++.++ ++
T Consensus 266 ~~~~~~~~pf~rity~ea~~~~~~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~-~-~p~fv~d~P~~~~~f~a~~~~~~p 343 (435)
T 2xgt_A 266 PKFQPPERPFLRMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTDTI-N-KPILLNRFPSEIKAFYMQRDAQDN 343 (435)
T ss_dssp TTCCCCCSSCEEEEHHHHHHHHHHTTCBCTTSCBCCTTSCCCHHHHHHHHHHH-T-SCEEEECCBGGGSCTTBCBCSSCT
T ss_pred ccccccCCCceEEEHHHHHHHHHhcCCCcccccccchhhHHHHHHHHHHHHhc-C-CcEEEECCChhhCcccCCCCCCCc
Confidence 0 123589999999999999887654322 35688999999999998765 3 799999999999999887665 45
Q ss_pred CceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccc
Q 011197 400 RTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDA 479 (491)
Q Consensus 400 ~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdv 479 (491)
.+++|||||++|+|||+|||+|+||+++|.+++++.|++++.++|||+|++||+|||||||||+|||+|++||.+|||||
T Consensus 344 ~~~~~fdl~~~G~~Ei~~G~~r~~d~~~q~~r~~~~g~~~~~~~~yl~a~~yG~pPhgG~glGiDRLvmll~g~~~Irdv 423 (435)
T 2xgt_A 344 TLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDV 423 (435)
T ss_dssp TBBSEEEEEETTTEEEEEEEEBCCCHHHHHHHHHHHTCCCGGGHHHHHHHHSSCCCEEEEEEEHHHHHHHHHTCSCGGGG
T ss_pred CeEEEEEEEcCCceEEEeeeEEeCCHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCCCceEEEhHHHHHHHHcCCCcHHhE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCC
Q 011197 480 IPFPRTPGSVE 490 (491)
Q Consensus 480 i~FPr~~~~~~ 490 (491)
|+|||++++|.
T Consensus 424 i~FPr~~~~~~ 434 (435)
T 2xgt_A 424 CLYPRFVGRCV 434 (435)
T ss_dssp SSSCCBTTBCC
T ss_pred ecccCCcCCCC
Confidence 99999999986
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-101 Score=806.51 Aligned_cols=423 Identities=30% Similarity=0.470 Sum_probs=380.8
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
++++|++|... +.|++|+|+|||+++|.+||++|++|||++|. ||||++++...|+.++. |+.||+|.|+
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~--l~~~~~v~v~ 72 (429)
T 1wyd_A 3 RSHFIADVTPE------YDGKEVIWAGWVHLLRDLGGKKFIILRDKTGL--GQVVVDKNSSAFGISQE--LTQESVIQVR 72 (429)
T ss_dssp CSSCTTTCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCee--EEEEEeCChHHHHHHHh--CCCCCEEEEE
Confidence 46889999764 68999999999999999999999999999974 99999876555666777 9999999999
Q ss_pred EEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccc---cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCC
Q 011197 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR---VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENG 166 (491)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~---~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~ 166 (491)
|+|.+++++.|++||+|++++|||+|..++|++.+. ++.+.++++||||+|++.+++++++||++++++|+||.++|
T Consensus 73 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~ff~~~g 152 (429)
T 1wyd_A 73 GIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEG 152 (429)
T ss_dssp EEEEECSSSGGGEEEEEEEEEEEECCCSSCSSCSSSCCCCCHHHHHHTHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCCCCCCCccccccCChhHhhhccceeccCHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999999988889999999999999997779988765 78888889999999999999999999999999999999999
Q ss_pred cEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCce
Q 011197 167 FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNV 246 (491)
Q Consensus 167 F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rv 246 (491)
|+||+||+|+++++||++++|.+ +|+++++||+||||+|+|++++|++||
T Consensus 153 F~eV~TP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~L~~Spql~~~~~~~g~~rv 202 (429)
T 1wyd_A 153 FIEIFTPKIIASATEGGAQLFPV------------------------------IYFGKEAFLAQSPQLYKELMAGVVERV 202 (429)
T ss_dssp CEECCCCSEESSCSSTTCCCCEE------------------------------EETTEEEEECSCCHHHHHHHHHHHSEE
T ss_pred CEEEECCEEEeeCCCCCceeEEE------------------------------ecCCceEEecCCcHHHHHHHHhCcCce
Confidence 99999999999999999999976 467889999999999998788899999
Q ss_pred EEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhh
Q 011197 247 YTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLST 326 (491)
Q Consensus 247 feI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~ 326 (491)
||||||||+|+++++||+|||||||||++|.|++|+|+++|+|+++ +++.+.+++..++++.+.. + +
T Consensus 203 f~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~----l~~~~~~~~~~~l~~~~~~--------~-~ 269 (429)
T 1wyd_A 203 FEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHN----IVKTIKEEGKEELKILNYE--------P-P 269 (429)
T ss_dssp EEEEEEECCCCCCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHHHTHHHHHHHTCC--------C-C
T ss_pred EEEcccccccCCccccccceeeEeeeeecCCCHHHHHHHHHHHHHH----HHHHHhccchhhhhhcccc--------c-c
Confidence 9999999999998889999999999999999999999999999999 9888877665555443321 0 0
Q ss_pred hhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceEEE
Q 011197 327 VAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVAAM 405 (491)
Q Consensus 327 ~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~~f 405 (491)
.++.||+|+||.||++++++.|.+ ..||.++...+|++|.+.+.. +|+||+|||.+++|||++.++ ++.++++|
T Consensus 270 ~l~~pf~rity~eA~~~~~~~g~~----~~~~~~l~~~~e~~l~~~~~~-~p~fv~d~P~~~~pfy~~~~~~~p~~~~~f 344 (429)
T 1wyd_A 270 EVKIPIKRLKYTEAIEILRSKGYN----IKFGDDIGTPELRILNEELKE-DLYFIVDWPSDARPFYTKSKSENPELSESF 344 (429)
T ss_dssp CCCSSCEEEEHHHHHHHHHHSSCC----CCTTSCCCHHHHHHHHHHHCC-SEEEEECCBGGGSCTTBCBCCC-CCBBSEE
T ss_pred cCCCCccEEEHHHHHHHHHhcCCC----cccCcccCcHHHHHHHHHhcc-CCEEEecCChhhChhhCCcCCCCCCeEEEE
Confidence 124689999999999999877643 468889999999998875543 699999999999999876654 44589999
Q ss_pred EEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCC
Q 011197 406 DMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485 (491)
Q Consensus 406 dl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~ 485 (491)
|||++|+ ||+|||+|+||++.|+++++++|++++.|+|||+|++||+|||||||||||||+|++||.+||||||+||++
T Consensus 345 Dl~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~FP~~ 423 (429)
T 1wyd_A 345 DLIYKFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRD 423 (429)
T ss_dssp EEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGSCCCCEEEEEEEHHHHHHHHHCCCCGGGTSSSCCB
T ss_pred EEEECCE-EEEeCeeeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEecCCC
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 011197 486 PGSVEF 491 (491)
Q Consensus 486 ~~~~~~ 491 (491)
+++|.+
T Consensus 424 ~~~~~p 429 (429)
T 1wyd_A 424 KKRLTP 429 (429)
T ss_dssp TTBCCC
T ss_pred CCCCCC
Confidence 999864
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-100 Score=814.36 Aligned_cols=427 Identities=26% Similarity=0.392 Sum_probs=353.0
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc----cchhhhhhcCCCCCc
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA----EGYDQVKSGLITTGA 84 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~----~~~~~~~~~~L~~gd 84 (491)
+.++.|++|... +.|++|+|+|||+++|.+||++|++|||++| +||||++++. ..++.++. |+.||
T Consensus 48 ~~~~~i~~l~~~------~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g--~iQ~v~~~~~~~~~~~~~~~~~--l~~es 117 (548)
T 3i7f_A 48 LKYTEIEELVPA------MAEKTVTIRARVQAVRGKGNMVFLFLRKGIY--TCQALVMKSETISKEFVQFCQK--ISAES 117 (548)
T ss_dssp CCBCCGGGCSGG------GTTCEEEEEEEEEEEEECSSEEEEEEEETTE--EEEEEEECSSSSCHHHHHHHHT--CCTTE
T ss_pred CceEEhhhcchh------cCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEECCCccCHHHHHHHhC--CCCCC
Confidence 356888888753 7899999999999999999999999999996 5999998732 12344566 99999
Q ss_pred EEEEEEEEEecCC-----CceeEEEEEeeEEEEccCCCCCCCCccc----------------------------------
Q 011197 85 SIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------------------------- 125 (491)
Q Consensus 85 ~V~V~G~v~~~~~-----~~~~~el~~~~i~ils~~~~~~P~~~~~---------------------------------- 125 (491)
+|.|+|+|++++. ..|++||+|++|+|||+|..++|++.++
T Consensus 118 ~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (548)
T 3i7f_A 118 ICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSVFKKQEEDIAKVDEKIAKFLKDNEGKDL 197 (548)
T ss_dssp EEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHHHHHHHHHTTCC----------------
T ss_pred EEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhcccccccccccccccccccccccccccccccccc
Confidence 9999999999874 3578999999999999998778987321
Q ss_pred ------------------------cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC
Q 011197 126 ------------------------VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE 181 (491)
Q Consensus 126 ------------------------~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e 181 (491)
.+.+.+.++||||+|++.++++|++||++++++|+||.++||+||+||+|++++||
T Consensus 198 ~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~e 277 (548)
T 3i7f_A 198 TKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSE 277 (548)
T ss_dssp ---------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSBC-----
T ss_pred ccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCC
Confidence 23344558999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCC
Q 011197 182 GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNT 260 (491)
Q Consensus 182 g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t 260 (491)
|++++|.+ +||+.++||+|||||||| ++++|++||||||||||||+++|
T Consensus 278 gga~~F~v------------------------------~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t 327 (548)
T 3i7f_A 278 GGSNIFEV------------------------------KYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNT 327 (548)
T ss_dssp --------------------------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCS
T ss_pred CCcceeEE------------------------------ecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCC
Confidence 99999975 678899999999999985 88999999999999999999999
Q ss_pred CcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHH
Q 011197 261 SRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTD 339 (491)
Q Consensus 261 ~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~e 339 (491)
+||||||||||||++|. |++++|+++|+||++ +++.+.+.+..++..+....+. ..+ .-.||+++||.|
T Consensus 328 ~RHl~EFtmlE~e~af~~d~~d~m~~~E~li~~----i~~~~~~~~~~el~~~~~~~~~---~~~---~~~pf~rit~~e 397 (548)
T 3i7f_A 328 RRHLTEFEGLDIEMEIVENYHECIDVMEKLFTF----IFDEIPKRFPDELKVIRKQYPF---EDL---IYRPFLRLTYKE 397 (548)
T ss_dssp SSCCSCEEEEEEEEECSSCTHHHHHHHHHHHHH----HHHHHHHHCHHHHHHHHHHSCC---CCC---CCCSCEEEEHHH
T ss_pred CCcchhhhchhhhhhhhcCHHHHHHHHHHHHHH----HHHHHHHhhhHHHHHhhhcCCc---ccc---ccCCcceeEHHH
Confidence 99999999999999998 799999999999999 9888877666555443221110 001 115899999999
Q ss_pred HHHHHHHhccccccccccccccchHHhhhhccc---cccCccEEEEeCCCCCcccccccC-CCCCceEEEEEEeCCeeEe
Q 011197 340 AIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE---AFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGEL 415 (491)
Q Consensus 340 a~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~---~~~~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~gEi 415 (491)
|++++++.|++ ..|+.+++.++|++|.+. .++..++||+|||.+++|||++.+ +++.+++|||||++| +||
T Consensus 398 ai~~l~~~g~~----~~~~~dl~~~~e~~l~~~i~~~~~~~~~~i~~yP~~~~pfYak~~~~dp~~~~rFDL~i~G-~Ei 472 (548)
T 3i7f_A 398 AIEMLRASGET----IGDYDDFTTPQEVKLGELIKAKYNTDFYILDKFPAAIRPFYTMPDIDDPNYSNSYDVFVRG-QEI 472 (548)
T ss_dssp HHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHHCCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETT-EEE
T ss_pred HHHHHHHcCCC----CCCccccchHHHHHHHHHHHHHcCCCeEEEecCccccCchhhccCCCCCCeEEEEEEEECC-EEE
Confidence 99999988865 357789999999887642 233245678899999999987655 456789999999999 599
Q ss_pred echhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 416 IGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 416 ~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
+|||+|++|+++|++++++.|++++.++|||+|++||+|||||||||||||+|++||..|||||++|||+|+||.
T Consensus 473 ~nG~~rl~Dp~~~~~R~~~~G~d~~~~e~yl~al~yG~PPhgG~GlGiDRLvMlltg~~nIRdVi~FPR~p~rl~ 547 (548)
T 3i7f_A 473 TSGAQRIHDPEFLMKRCIEKGVDPATLKDYIESFRFGSWPHAGCGIGLERITMLYLGIPNIRKVTLFPRDPIRLN 547 (548)
T ss_dssp EEEEEECCCHHHHHHHHHHTTCCGGGGHHHHHTTSSCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred eeCeeecCCHHHHHHHHHHcCCChHHHHHHHHHHhCCCCCceEEEEcHHHHHHHHhCCccHHHhhcCCCCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999984
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-100 Score=796.53 Aligned_cols=425 Identities=36% Similarity=0.602 Sum_probs=383.0
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcCCCCCcEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGLITTGASI 86 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~L~~gd~V 86 (491)
++++|++|... +.|++|+|+|||+++|.+||++|++|||++|. ||||++++. ..|+.++. |+.||+|
T Consensus 3 ~~~~~~~l~~~------~~~~~V~v~G~v~~~R~~g~~~F~~lrD~~g~--iQ~v~~~~~~~~~~~~~~~~--l~~~~~v 72 (434)
T 1x54_A 3 EKVYCQEVKPE------LDGKKVRLAGWVYTNMRVGKKIFLWIRDSTGI--VQAVVAKNVVGEETFEKAKK--LGRESSV 72 (434)
T ss_dssp CCCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTEE--EEEEECHHHHCHHHHHHHHT--CCTTCEE
T ss_pred eEEEHHHhhHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEECCcCCHHHHHHHhc--CCCCCEE
Confidence 57889999764 68999999999999999999999999999974 999997542 34666667 9999999
Q ss_pred EEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCC--CccccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhh
Q 011197 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI--QKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQE 164 (491)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~--~~~~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~ 164 (491)
.|+|+|.+++++.|++||+|++++|||+| .++|+ +.+.++.+.++++||||+|++.+++++++|+++++++|+||.+
T Consensus 73 ~v~G~v~~~~~~~~~~el~~~~~~vl~~~-~~~P~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~ 151 (434)
T 1x54_A 73 IVEGIVKADERAPGGAEVHVEKLEVIQAV-SEFPIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLK 151 (434)
T ss_dssp EEEEEEEECTTSGGGEEEEEEEEEEEECC-SCCSSCSSGGGSCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEEecCCCCccEEEEEeEEEEeecC-CCCCCcccccCCCHHHhhhceeeeecCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888999999999999999 66998 6667888888899999999999999999999999999999999
Q ss_pred CCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCC
Q 011197 165 NGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALS 244 (491)
Q Consensus 165 ~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~ 244 (491)
+||+||+||+|+++++++++++|.+ +|++.++||+||||+|+|++++|++
T Consensus 152 ~gF~eVeTP~l~~~~~e~~~~~f~~------------------------------~~~~~~~~Lr~Spel~~~~~~~g~~ 201 (434)
T 1x54_A 152 DGWHEVFPPILVTGAVEGGATLFKL------------------------------KYFDKYAYLSQSAQLYLEAAIFGLE 201 (434)
T ss_dssp TTCEECCCCSEESCCSSCGGGCCEE------------------------------EETTEEEEECSCSHHHHHHHHHHHS
T ss_pred CCCEEEeCcEEEeecCCCCceeEEE------------------------------eecCCcEEeccChHHHHHHHhcCcc
Confidence 9999999999999999999999976 5678899999999999987888999
Q ss_pred ceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhh
Q 011197 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRL 324 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l 324 (491)
|||+||||||+|+++++||+|||||||||++|.|++|+|+++|+|+++ +++.+.+++..++++.+... +.+
T Consensus 202 rvf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~~~dlm~~~e~ll~~----l~~~v~~~~~~~i~~~~~~~-----~~~ 272 (434)
T 1x54_A 202 KVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSY----MVQRTLELRKKEIEMFRDDL-----TTL 272 (434)
T ss_dssp EEEEEEEEECCCCCCCSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHHHCHHHHHTTCSCC-----HHH
T ss_pred ceEEEecceecCCCCCcccccEEEEeeEEEcCCCHHHHHHHHHHHHHH----HHHHHhhhchhhhhhcCccc-----ccc
Confidence 999999999999998889999999999999999999999999999999 99888877766676655321 112
Q ss_pred hhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCC-CCCceE
Q 011197 325 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQND-DGRTVA 403 (491)
Q Consensus 325 ~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~-~~~~~~ 403 (491)
. .++.||+|+||.||++++++.|.+ +.||.+++..+|++|.+.+. +|+||+|||.+++|||++.++ ++.+++
T Consensus 273 ~-~~~~pf~rity~ea~~~~~~~g~~----~~~~~dl~~~~e~~l~~~~~--~p~fv~d~P~~~~pfy~~~~~~~p~~~~ 345 (434)
T 1x54_A 273 K-NTEPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEEFD--RPFFVYGYPKHIKAFYMKEDPNDPRKVL 345 (434)
T ss_dssp H-TCCSSCCEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHTTCS--SCEEEEEEEGGGSCTTBCBCSSCTTEEE
T ss_pred c-ccCCCCcEEEHHHHHHHHHhcCCC----cccCCccChHHHHHHHHHhC--CcEEEEcCChhhCcccCCcCCCCCCeEE
Confidence 2 246699999999999999887754 46888999999999987653 799999999999999876554 456899
Q ss_pred EEEEEeC-CeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCccccccc
Q 011197 404 AMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 404 ~fdl~~~-G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
+||||++ |+|||+|||+|+||++.|+++++++|++++.|+|||+|++||+|||||||||||||+|++||.+|||||++|
T Consensus 346 ~fDl~~~~G~gEi~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~al~yG~PP~~G~glGiDRLvmll~g~~~Irdvi~F 425 (434)
T 1x54_A 346 ASDMLAPEGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALF 425 (434)
T ss_dssp EEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHTTTSSCCCEEEEEEEHHHHHHHHTTCSSGGGGSSS
T ss_pred EEEEEECCCceEEecCeEeeCCHHHHHHHHHHcCCChHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHcCCCcHHhEEEc
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCC
Q 011197 483 PRTPGSVEF 491 (491)
Q Consensus 483 Pr~~~~~~~ 491 (491)
|+++++|..
T Consensus 426 P~~~~~~~p 434 (434)
T 1x54_A 426 PRTPARLYP 434 (434)
T ss_dssp CCBTTBCCC
T ss_pred cCcCCCCCC
Confidence 999999863
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-100 Score=793.67 Aligned_cols=411 Identities=26% Similarity=0.425 Sum_probs=316.3
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC-CCcEEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT-TGASIWIQ 89 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~-~gd~V~V~ 89 (491)
+++|++|. . +.|++|+|+|||+++|.+||++|++|||++|. ||||+++ +. |+ .||+|.|+
T Consensus 2 ~~~~~~l~-~------~~~~~V~v~Gwv~~~R~~g~~~F~~lrD~~g~--iQ~v~~~--------~~--l~~~~~~v~v~ 62 (422)
T 1n9w_A 2 RVLVRDLK-A------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGG--------LK--LPLPESALRVR 62 (422)
T ss_dssp BCCGGGGG-G------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEES--------CC--CCCTTCEEEEE
T ss_pred eEEHHHHH-h------cCCCEEEEEEEEEEEecCCCeEEEEEEECCEE--EEEEEEc--------cc--cCCCCCEEEEE
Confidence 46788887 3 68999999999999999999999999999974 9999985 34 99 99999999
Q ss_pred EEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccc----cChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhC
Q 011197 90 GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKR----VSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQEN 165 (491)
Q Consensus 90 G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~----~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~ 165 (491)
|+|.+++++.|++||+|++++|||+|..++|++.+. ++.+.++++||||+|++.+++++++|+++++++|+||.++
T Consensus 63 G~v~~~~~~~~~~el~~~~~~vl~~~~~~~P~~~~~~~~~~~~e~r~~~R~Ldlr~~~~~~~~~~rs~i~~~ir~~f~~~ 142 (422)
T 1n9w_A 63 GLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQ 142 (422)
T ss_dssp EEEEECTTSTTSEEEEEEEEEEEECCCSCCC-----------------CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCCCccEEEEEeEEEEeccCCcCCCCCccccccCCCHHHHhhhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999988889999999999999997779988765 7788888999999999999999999999999999999999
Q ss_pred CcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHHHHhccCCc
Q 011197 166 GFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSN 245 (491)
Q Consensus 166 ~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lql~~~g~~r 245 (491)
||+||+||+|+++++++++++|.+ +|+++++||+||||+|+|++++|++|
T Consensus 143 gF~EV~TPil~~~~~e~~~~~f~~------------------------------~~~g~~~~L~~Spel~~~~l~~g~~r 192 (422)
T 1n9w_A 143 DFTEIFTPKVVRAGAEGGSGLFGV------------------------------DYFEKRAYLAQSPQLYKQIMVGVFER 192 (422)
T ss_dssp TCEECCCC----------------------------------------------------------CHHHHHHHHHHHSE
T ss_pred CCEEEECCEEEEeCCCCCceeEEE------------------------------eeCCCcEEeeeCHHHHHHHHhhCCCc
Confidence 999999999999999999999975 46788899999999999866688999
Q ss_pred eEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhh
Q 011197 246 VYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRL 324 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l 324 (491)
|||||||||+|+++++||+|||||||||++|+ |++|+|+++|+|+++ +++.+.+++..++++.+...
T Consensus 193 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~----l~~~~~~~~~~~i~~~~~~~-------- 260 (422)
T 1n9w_A 193 VYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAE----MLEEALNTAGDEIRLLGATW-------- 260 (422)
T ss_dssp EEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHH----HHHHHHHHSHHHHHHTTCCC--------
T ss_pred eeEEeCceECCCCCCCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHH----HHHHHhccchhhhhhcCccc--------
Confidence 99999999999998889999999999999999 999999999999999 98888776665555443210
Q ss_pred hhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccccc---cCccEEEEeCCCCCcccccccCCCCCc
Q 011197 325 STVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF---GGCPVIVSDYPKEIKAFYMRQNDDGRT 401 (491)
Q Consensus 325 ~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~---~~~p~~i~~~P~~~~pf~~~~~~~~~~ 401 (491)
+....||+|+||.||++++++.+ ...||.++...+|++|.+.+. +.+|+||+|||..++|||++.+++ .+
T Consensus 261 -~~~~~pf~rity~eA~~~~~~~~-----~~~~~~dl~~~~e~~l~~~~~~~~~~~p~fv~d~P~~~~pf~~~~~~d-~~ 333 (422)
T 1n9w_A 261 -PSFPQDIPRLTHAEAKRILKEEL-----GYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEED-GT 333 (422)
T ss_dssp -CCCSSSCCEEEHHHHHHHHHHTS-----CCCCCSSCCHHHHHHHHHHHHHHTCCSEEEEECCBGGGSCTTBCBCTT-SB
T ss_pred -cccCCCcceeEHHHHHHHHHhcC-----CcccccccCcHHHHHHHHHHHhhhCCceEEEECCChhhCcCcCCCCCC-CE
Confidence 01115899999999999998766 256788899988888875432 236999999999999999988776 78
Q ss_pred eEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 402 VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 402 ~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
+++||||++|+ ||+|||+|+||+++|++++++.|++++.++|||+|++||+|||||||||||||+|++||.+||||||+
T Consensus 334 ~~~fDL~~~G~-Ei~~G~~r~~d~~~q~~rf~~~g~~~~~~~~yl~a~~yG~PPhgG~glGiDRLvm~l~g~~~Irdvi~ 412 (422)
T 1n9w_A 334 TRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARA 412 (422)
T ss_dssp BSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGGGGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCS
T ss_pred EEEEEEEECCE-EEEeCEeecCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCceEEEEcHHHHHHHHhCCCcHHhEEe
Confidence 99999999998 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC
Q 011197 482 FPRTPGSVE 490 (491)
Q Consensus 482 FPr~~~~~~ 490 (491)
||+++++|.
T Consensus 413 FPr~~~~~~ 421 (422)
T 1n9w_A 413 FPRDRHRLT 421 (422)
T ss_dssp CC-------
T ss_pred cCCCCCCCC
Confidence 999999986
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-98 Score=797.75 Aligned_cols=441 Identities=17% Similarity=0.252 Sum_probs=360.2
Q ss_pred CCcccceeeccccCCccc---CCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCc----cchhhh-h
Q 011197 6 GEFRKKLKIVDVKGGPNE---GLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDA----EGYDQV-K 76 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~---~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~----~~~~~~-~ 76 (491)
.+|.++++++++...|.+ ++...+++|+|+|||+++|.+| |++|++|||++| .||||++++. ..|+.+ +
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~~ 106 (521)
T 3bju_A 29 HKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGV--KLQVMANSRNYKSEEEFIHINN 106 (521)
T ss_dssp SCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTE--EEEEEEEGGGSSCHHHHHHHHH
T ss_pred CcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCE--EEEEEEECCccCCHHHHHHHHh
Confidence 468889999999876642 3445688999999999999999 999999999995 5999998653 245543 5
Q ss_pred hcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCcc-ccChhhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 77 SGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 77 ~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~-~~~~~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
. |+.||+|.|+|+|.+++++ ++||+|++++||++|..++|...+ ..+.+...++||||+| ++.++++|++||+|
T Consensus 107 ~--l~~gd~V~V~G~v~~t~~g--e~ei~~~~i~~l~~~~~~lP~~~~~~~~~e~r~r~RyLdLr~~~~~~~~~r~Rs~i 182 (521)
T 3bju_A 107 K--LRRGDIIGVQGNPGKTKKG--ELSIIPYEITLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNDFVRQKFIIRSKI 182 (521)
T ss_dssp H--CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCCSCCCCC----CCHHHHHHCHHHHHHHCHHHHHHHHHHHHH
T ss_pred c--CCCCCEEEEEEEEEecCCC--CEEEEEeEEEEeecCCCCCCCccccccChhhhhhhhhhhHhcCHHHHHHHHHHHHH
Confidence 6 9999999999999999864 899999999999999866775533 2456666699999999 89999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++++++++++|.+ ++ +||+.++||+|||||
T Consensus 183 ~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t-~~---------------------------~~~~~~~yL~~SpqL 234 (521)
T 3bju_A 183 ITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFIT-YH---------------------------NELDMNLYMRIAPEL 234 (521)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEE-EE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEeCceeeccCCCccccceee-ec---------------------------ccCCcceEeeCCHHH
Confidence 99999999999999999999999887777899954 32 578999999999999
Q ss_pred HHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------
Q 011197 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKE------ 307 (491)
Q Consensus 235 ~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~------ 307 (491)
||| |+++|++||||||||||||++++ ||||||||||||++|+||+|+|+++|+||++ +++.+.+++.-
T Consensus 235 ~lk~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d~~dlm~l~E~li~~----v~~~v~~~~~~~~~~~~ 309 (521)
T 3bju_A 235 YHKMLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYADYHDLMEITEKMVSG----MVKHITGSYKVTYHPDG 309 (521)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHSSSEEEECTTC
T ss_pred HHHHHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCCHHHHHHHHHHHHHH----HHHHHhCCceEEecccc
Confidence 996 78999999999999999999965 9999999999999999999999999999999 99988875421
Q ss_pred ------cccccchhhcchhhhhhhhhhcCCCc---cccHHHHHHHH----HHhccccccccccccccchHHhhhhccccc
Q 011197 308 ------DMDFFNTWIEKGIIDRLSTVAERDFV---QLSYTDAIELL----IKAKKKFEFLVKWGCDLQSEHERYLTEEAF 374 (491)
Q Consensus 308 ------~l~~~~~~~~~~~~~~l~~~~~~~~~---~it~~ea~~~l----~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~ 374 (491)
++++..+|.+.++.++++.+.+.+++ .++..++.+.| ++.++.+.....||..++..+++++.+.+.
T Consensus 310 ~d~~~~~~d~~~pf~rit~~eai~~~~g~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~e~~ve~~l~ 389 (521)
T 3bju_A 310 PEGQAYDVDFTPPFRRINMVEELEKALGMKLPETNLFETEETRKILDDICVAKAVECPPPRTTARLLDKLVGEFLEVTCI 389 (521)
T ss_dssp TTSCCEEEECCSSCEEEEHHHHHHHHHTSCCCCGGGTTSHHHHHHHHHHHHHTTCCCCSCCCHHHHHHHHHHHHTGGGCC
T ss_pred cccccceeccCCCcccccHHHHHHHHhCCCCCccccCCcHHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 11222233333444444443333332 12222222221 222332222345666777888998887654
Q ss_pred cCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc------CCCccc--HHHHH
Q 011197 375 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL------KLNRDS--YWWYL 446 (491)
Q Consensus 375 ~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~------g~~~~~--~~~yl 446 (491)
+|+||+|||.+++|||++.++++.+++|||||++|. ||+|||+|++|+..|++++++. |.+++. ++|||
T Consensus 390 --~P~fI~dyP~~~spla~~~~~dp~~~~rfdL~i~G~-Ei~ng~~el~Dp~~qr~rf~~q~~~~~~g~~e~~~~d~~yl 466 (521)
T 3bju_A 390 --NPTFICDHPQIMSPLAKWHRSKEGLTERFELFVMKK-EICNAYTELNDPMRQRQLFEEQAKAKAAGDDEAMFIDENFC 466 (521)
T ss_dssp --SCEEEECCBGGGCTTBCBCSSSTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTCTTSCCCCHHHH
T ss_pred --CcEEEECCccccCcccccCCCCCCeeeeEEEEEcce-eeecChhhhCCHHHHHHHHHHHHHHHhcCCChhhcchHHHH
Confidence 799999999999999988777888999999999995 9999999999999999998754 777665 69999
Q ss_pred HHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 447 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 447 ~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
+|++||+|||||||||||||+|++||.+||||||+||+.+..
T Consensus 467 ~al~yG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~~~~ 508 (521)
T 3bju_A 467 TALEYGLPPTAGWGMGIDRVAMFLTDSNNIKEVLLFPAMKPE 508 (521)
T ss_dssp HHHTTTCCSEEEEEEEHHHHHHHHTTCSSGGGSCSSCCCCCC
T ss_pred HHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEecCCCCCCc
Confidence 999999999999999999999999999999999999999864
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-97 Score=788.07 Aligned_cols=432 Identities=24% Similarity=0.397 Sum_probs=366.9
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCe-EEEEEEcCCCccceEEEEeCCc------cchhhhhhcCCC
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSV-TFIEVNDGSCLSNMQCVMTSDA------EGYDQVKSGLIT 81 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl-~Fi~LrD~~g~~~iQvv~~~~~------~~~~~~~~~~L~ 81 (491)
+++++|++|... ++.|++|+|+|||+++|++||+ +|++|||++| .||||++++. ..++.++. |+
T Consensus 21 ~~~~~~~~l~~~-----~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~~~~~--l~ 91 (487)
T 1eov_A 21 QKRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LN 91 (487)
T ss_dssp CCCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CC
T ss_pred cceeEHHHhccc-----ccCCCEEEEEEEEEEeeccCCccEEEEEEECCc--cEEEEEeccccccccHHHHHHHhc--CC
Confidence 345678888642 2689999999999999999997 9999999996 5999998651 22445666 99
Q ss_pred CCcEEEEEEEEEecCC-----CceeEEEEEeeEEEEccCCCCCCCCccc---------------cChhhhccCccccCCC
Q 011197 82 TGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDPSYPIQKKR---------------VSREFLRTKAHLRPRT 141 (491)
Q Consensus 82 ~gd~V~V~G~v~~~~~-----~~~~~el~~~~i~ils~~~~~~P~~~~~---------------~~~~~~r~~~~l~~R~ 141 (491)
.||+|.|+|+|.+++. +.|++||+|++++|||+|..++|++.++ .+.+.++++||||+|+
T Consensus 92 ~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~~~~~~~~~~~e~r~~~R~LdLr~ 171 (487)
T 1eov_A 92 LESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGLPVVNLDTRLDYRVIDLRT 171 (487)
T ss_dssp TTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHHHHTTCCCCCHHHHHHTHHHHTTS
T ss_pred CCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccccccccccCChhhhhhcceeecCC
Confidence 9999999999999984 3478999999999999998778886432 4556667999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 142 NTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 142 ~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
+.+++++++||+|++++|+||.++||+||+||+|+++++++++++|.+ +|
T Consensus 172 ~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~------------------------------~~ 221 (487)
T 1eov_A 172 VTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------------------------------TY 221 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE------------------------------EE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCccccee------------------------------cc
Confidence 999999999999999999999999999999999999999999999976 45
Q ss_pred cCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQLYSCMQVR 299 (491)
Q Consensus 222 f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~~~~~i~~ 299 (491)
+++++||+||||+|+| +|++|++||||||||||||+++++||+|||||||||++|. +++|+|+++|+||++ +++
T Consensus 222 ~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~----l~~ 297 (487)
T 1eov_A 222 FKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVF----IFS 297 (487)
T ss_dssp TTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHH----HHH
T ss_pred CCccEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHH----HHH
Confidence 6889999999999997 6789999999999999999998899999999999999997 699999999999999 888
Q ss_pred HHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhccc---cccC
Q 011197 300 YILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEE---AFGG 376 (491)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~---~~~~ 376 (491)
.+.+++..++..+....... .+.-..+.||++++|.||++++++.|.+ ..++.++...+++.|.+. .+..
T Consensus 298 ~v~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~ri~~~ea~~~l~~~g~~----~~~~~d~~~~~e~~l~~~~~~~~~~ 370 (487)
T 1eov_A 298 ELPKRFAHEIELVRKQYPVE---EFKLPKDGKMVRLTYKEGIEMLRAAGKE----IGDFEDLSTENEKFLGKLVRDKYDT 370 (487)
T ss_dssp HHHHHCHHHHHHHHHHSCCC---CCCCCTTCCCEEEEHHHHHHHHHHTTCC----CCTTCCCCHHHHHHHHHHHHHHSCC
T ss_pred HHHhhchhHHHhhhhhcCCc---ceecccCCCeeEEEHHHHHHHHHHhCCC----CCcccchhhHHHHHHHHHHHHHhCC
Confidence 88776654443222111100 0000012378999999999999887764 345667888888877632 2333
Q ss_pred ccEEEEeCCCCCcccc-cccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcc--cHHHHHHHHhcCC
Q 011197 377 CPVIVSDYPKEIKAFY-MRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRD--SYWWYLDLRHYGS 453 (491)
Q Consensus 377 ~p~~i~~~P~~~~pf~-~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~--~~~~yl~~~~~G~ 453 (491)
.|+||+|||..++||| ++.++|+.++++||||++|+ ||+|||+|+||++.|++++++.|++++ .++|||+|++||+
T Consensus 371 ~~~~v~dyP~~~~pfy~~~~~~dp~~~~~fDL~~~G~-Ei~~G~~rl~d~~~q~~r~~~~g~~~~~~~~~~yl~al~yG~ 449 (487)
T 1eov_A 371 DFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPGLKDYCDGFSYGC 449 (487)
T ss_dssp SEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTTTHHHHHHHTTCC
T ss_pred CCEEEECCccccChhhcCcCCCCCCeEEEEEEEeCCE-EEEeeEEecCCHHHHHHHHHHcCCChhhhhHHHHHHHHhcCC
Confidence 5789999999999996 44455667899999999995 999999999999999999999999988 7899999999999
Q ss_pred CCccceeccHHHHHHHHcCCCCcccccccCCCCCCCCC
Q 011197 454 VPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVEF 491 (491)
Q Consensus 454 pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~~ 491 (491)
|||||||||||||+|++||.+||||||+|||+|++|..
T Consensus 450 PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~~r~~p 487 (487)
T 1eov_A 450 PPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLRP 487 (487)
T ss_dssp CCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBTTBCCC
T ss_pred CCCeEEEEhHHHHHHHHcCCCcHHheeecCCCCCCCCC
Confidence 99999999999999999999999999999999999863
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-97 Score=786.17 Aligned_cols=426 Identities=19% Similarity=0.295 Sum_probs=348.7
Q ss_pred CcccceeeccccCCcccCC----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchh-hhhhc
Q 011197 7 EFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYD-QVKSG 78 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~-~~~~~ 78 (491)
+|.++++|.+|...|.+-. ...|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+ .++.
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~~- 114 (504)
T 1e1o_A 38 DFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFKK- 114 (504)
T ss_dssp CCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHHTGGG-
T ss_pred CCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEECCcCCHHHHHHHHhc-
Confidence 6888999999988754200 01288999999999999999999999999996 5999998763 3466 5667
Q ss_pred CCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 79 ~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
|+.||+|.|+|+|.+++++ ++||+|++++||++|..++| .+.++ .+...++||||+| ++.++++|++||+|
T Consensus 115 -l~~g~~V~V~G~v~~~~~g--e~ei~~~~i~vl~~a~~plP--~k~~~~~~~e~r~r~RyLdL~~~~~~~~~~r~Rs~i 189 (504)
T 1e1o_A 115 -WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALRPLP--DKFHGLQDQEVRYRQRYLDLIANDKSRQTFVVRSKI 189 (504)
T ss_dssp -CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC--C-------TTHHHHTHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEEEEEecCCc--eEEEEEEEEEEecccCCCCC--ccccCCcChhhhhhccchhhhcCHHHHHHHHHHHHH
Confidence 9999999999999999875 89999999999999974445 45443 4555599999995 89999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||+|||||
T Consensus 190 ~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t-~~---------------------------~~~~~~~yL~~SpqL 241 (504)
T 1e1o_A 190 LAAIRQFMVARGFMEVETPMMQVIPGGASARPFIT-HH---------------------------NALDLDMYLRIAPEL 241 (504)
T ss_dssp HHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEE-EE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEECCeEEecCCCCcccceEe-cc---------------------------CCCCceEEeccCHHH
Confidence 99999999999999999999998877777899964 32 567999999999999
Q ss_pred HHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 011197 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFN 313 (491)
Q Consensus 235 ~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~ 313 (491)
||| |+++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||++ +++.+.+++. +.+.+
T Consensus 242 ylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d~~dlm~l~E~li~~----~~~~v~~~~~--i~~~~ 314 (504)
T 1e1o_A 242 YLKRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYADYHDLIELTESLFRT----LAQEVLGTTK--VTYGE 314 (504)
T ss_dssp HHHHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHHSSSE--EEETT
T ss_pred HHHHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCCHHHHHHHHHHHHHH----HHHHHhCCce--eeeCC
Confidence 996 6889999999999999999995 59999999999999999999999999999999 9999987663 44322
Q ss_pred hhhcchhhhhhhhhhcCCCccccHHHHHHHHHH-h------------------ccccccccccccccchHHhhhhccccc
Q 011197 314 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-A------------------KKKFEFLVKWGCDLQSEHERYLTEEAF 374 (491)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-~------------------~~~~~~~~~~g~~l~~~~e~~l~~~~~ 374 (491)
.. + .+..||+|+||.||++.+.. . |.++.....+|..+...++.++.+ .+
T Consensus 315 ~~--------i--~~~~pf~rity~eAi~~~~~d~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~-~~ 383 (504)
T 1e1o_A 315 HV--------F--DFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEA-HL 383 (504)
T ss_dssp EE--------E--ETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGG-GC
T ss_pred Ee--------e--ccCCCceEEeHHHHHHHHcCCCCccccCCHHHHHHHHHHcCCCCCCCcCHhHHHHHHHHHHhhc-cC
Confidence 10 0 13457888888888877654 2 111111111222334445555544 44
Q ss_pred cCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc-----CCCcccH---HHHH
Q 011197 375 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDSY---WWYL 446 (491)
Q Consensus 375 ~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~-----g~~~~~~---~~yl 446 (491)
. +|+||+|||.+++||||+.++|+.++++||||++|+ ||+|||+|+||++.|++++++. ..+++.+ +|||
T Consensus 384 ~-~p~fV~dyP~~~~pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl 461 (504)
T 1e1o_A 384 I-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAEDQAERFQEQVNAKAAGDDEAMFYDEDYV 461 (504)
T ss_dssp C-SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTCCCCCHHHH
T ss_pred C-CeEEEECCCcccCcCcCCCCCCCCceEEEEEEECCe-EEccceeeeCCHHHHHHHHHHHHHHhhcCChhhhhchHHHH
Confidence 4 799999999999999988777778999999999998 9999999999999999998753 1233333 9999
Q ss_pred HHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 447 DLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 447 ~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
+|++||+|||||||||||||+|+|||.+||||||+||+.+..
T Consensus 462 ~al~yG~PPhgG~glGiDRLvmlltg~~~IRdVi~FPr~~~~ 503 (504)
T 1e1o_A 462 TALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMRPQ 503 (504)
T ss_dssp HHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCCC-
T ss_pred HHHhcCCCCceeEEEcHHHHHHHHhCCCcHHhEeccCCCCCC
Confidence 999999999999999999999999999999999999998763
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-97 Score=784.65 Aligned_cols=427 Identities=20% Similarity=0.288 Sum_probs=350.2
Q ss_pred CCcccceeeccccCCcccCC----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhc
Q 011197 6 GEFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSG 78 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~ 78 (491)
.+|.++++|.+|...|.+-. +..|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 59 ~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~Gk~~Fi~LrD~sg--~iQvv~~~~~~~~~~~~~~~~- 135 (529)
T 4ex5_A 59 NDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMGKASFATVQDGSG--QIQFFVTPADVGAETYDAFKK- 135 (529)
T ss_dssp CCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEECSSC--EEEEEECHHHHCHHHHHHHHT-
T ss_pred CCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCCCeEEEEEEeCCe--eEEEEEECCcCCHHHHHHHhc-
Confidence 36888999999988764210 11378999999999999999999999999996 5999998753 23666777
Q ss_pred CCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHHH
Q 011197 79 LITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNAL 154 (491)
Q Consensus 79 ~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~i 154 (491)
|+.||+|.|+|+|.+++++ ++||+|++++|||+|. .|+|.+.++ .+...++||||+| ++.++++|++||+|
T Consensus 136 -l~~gd~V~V~G~v~~t~~g--elel~~~~i~vLs~a~--~plP~k~~~l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i 210 (529)
T 4ex5_A 136 -WDLGDIVAARGVLFRTNKG--ELSVKCTQLRLLAKAL--RPLPDKFHGLADQETRYRQRYVDLIVTPETRTTFRARTKA 210 (529)
T ss_dssp -CCTTCEEEEEEEEEECTTS--CEEEEEEEEEEEECCS--SCCCC------CTTHHHHTHHHHHHHCHHHHHHHHHHHHH
T ss_pred -CCCCCEEEEEEEEEEcCCC--cEEEEEEEEEEEecCC--CCCCccccCCcChhhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 9999999999999998865 8999999999999997 455555443 3455589999997 89999999999999
Q ss_pred HHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhh
Q 011197 155 AYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL 234 (491)
Q Consensus 155 ~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql 234 (491)
++++|+||.++||+||+||+|+++++++++++|. |++ ++|+.++||+|||||
T Consensus 211 ~~~iR~ff~~~gFlEVeTPiL~~~~gGA~a~pF~-t~~---------------------------n~~~~~~yL~~SpqL 262 (529)
T 4ex5_A 211 IASIRKFMGDADFMEVETPMLHPIPGGAAAKPFV-THH---------------------------NALDMEMFLRIAPEL 262 (529)
T ss_dssp HHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCE-EEE---------------------------TTTTEEEEECSCSHH
T ss_pred HHHHHHHHHHCCCEEEeCCeeeccCCCCcccccc-ccc---------------------------ccCCcceecccCHHH
Confidence 9999999999999999999999887776779995 433 567999999999999
Q ss_pred HHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Q 011197 235 NAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFN 313 (491)
Q Consensus 235 ~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~ 313 (491)
||| |+++|++||||||||||||+++ .||||||||||||++|+|++|+|+++|+||++ +++.+.+++ ++.+.+
T Consensus 263 ylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~----v~~~v~~~~--~~~~~~ 335 (529)
T 4ex5_A 263 YLKRLIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQ----AAVDALGTA--TIQYQG 335 (529)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHSCS--EEEETT
T ss_pred HHHHHHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCCHHHHHHHHHHHHHH----HHHHHhCcC--ceecCc
Confidence 995 8899999999999999999995 79999999999999999999999999999999 999988764 333322
Q ss_pred hhhcchhhhhhhhhhcCCCccccHHHHHHHHHH-------------------hcccccccc--cccc-ccchHHhhhhcc
Q 011197 314 TWIEKGIIDRLSTVAERDFVQLSYTDAIELLIK-------------------AKKKFEFLV--KWGC-DLQSEHERYLTE 371 (491)
Q Consensus 314 ~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~-------------------~~~~~~~~~--~~g~-~l~~~~e~~l~~ 371 (491)
.. -.+..||+|+||.||++.+.. .|++++... .|+. ++-.+++..+++
T Consensus 336 ~~----------id~~~pf~Rity~eAi~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~g~l~~e~~~~~vE 405 (529)
T 4ex5_A 336 RE----------LDLAQPFHRLTITQAIQKYAPSYTDGQLSDDAFLRSELKRLGVDVTQPAFLNAGIGALQLALFEETAE 405 (529)
T ss_dssp EE----------EETTSCCEEEEHHHHHHHHCTTSCHHHHTCHHHHHHHHHHTTCCTTSGGGTTCCHHHHHHHHHHHHTG
T ss_pred ee----------eccCCCceEEEHHHHHHHHhCCCChhhcCCHHHHHHHHHHcCCCCCCcccCCCCHHHHHHHHHHHHhc
Confidence 11 014568888999888876543 233222100 3332 333334344445
Q ss_pred ccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHH------cCCCcccH--H
Q 011197 372 EAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE------LKLNRDSY--W 443 (491)
Q Consensus 372 ~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~------~g~~~~~~--~ 443 (491)
..+. +|+||+|||.+++|||++.++++.+++|||||++|+ ||+|||+|++|+++|.+++.+ .|.+++.+ +
T Consensus 406 ~~l~-~P~FI~dyP~~~splak~~~~~p~~~~rFeL~i~G~-EianG~~el~Dp~~q~~rf~~q~~~~~~gd~ea~~~De 483 (529)
T 4ex5_A 406 AQLW-EPTFIIDYPIEVSPLARESDTVAGITERFELFITGR-EIANGFSELNDPEDQAARFKKQVEQKDAGDEEAMFFDA 483 (529)
T ss_dssp GGCC-SCEEEEEEEGGGCTTBCBCSSSTTEEEEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCH
T ss_pred cccC-CCEEEECCchhhCCCcccCCCCCCceEEEEEEECCE-EEecchhccCCHHHHHHHHHHHHHHHhcCCcccccchH
Confidence 5555 899999999999999987777778999999999996 999999999999999888854 34444332 8
Q ss_pred HHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 444 WYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 444 ~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
|||+|++||+|||||||||||||+|++||.+|||||++||+...
T Consensus 484 ~yl~aleyG~PP~gG~GlGiDRLvMlltg~~~IRdVi~FP~~r~ 527 (529)
T 4ex5_A 484 DYIRALEYGMPPTGGCGIGIDRLVMLLTDSPTIRDVLLFPHLRR 527 (529)
T ss_dssp HHHHHHHTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCCC
T ss_pred HHHHHHHcCCCCCcEEEEeHHHHHHHHcCCCcHHHeecCCccCC
Confidence 99999999999999999999999999999999999999999764
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-96 Score=781.03 Aligned_cols=435 Identities=20% Similarity=0.301 Sum_probs=352.5
Q ss_pred CcccceeeccccCCcccCC----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhhhhhcC
Q 011197 7 EFRKKLKIVDVKGGPNEGL----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQVKSGL 79 (491)
Q Consensus 7 ~~~~~~~i~~l~~~~~~~~----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~~~~~~ 79 (491)
+|.++++|.+|...|.+-. ...|++|+|+|||+++|.+||++|++|||++| .||||++++. ..|+.++.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~gk~~F~~LrD~sg--~iQvv~~~~~~~~~~~~~~~~-- 105 (493)
T 3a74_A 30 RFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMGKAGFAHIQDVTG--QIQIYVRQDDVGEQQYELFKI-- 105 (493)
T ss_dssp CCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEEHHHHHHHHHHHHHH--
T ss_pred CCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCCCcEEEEEEECCE--eEEEEEECCcCCHHHHHHHhc--
Confidence 6788999999988754210 01288999999999999999999999999996 5999998653 24566777
Q ss_pred CCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCCCccccC---hhhhccCccccCC-ChHHHHHHHHHHHHH
Q 011197 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVS---REFLRTKAHLRPR-TNTFGAVARVRNALA 155 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~---~~~~r~~~~l~~R-~~~~~~~~~~Rs~i~ 155 (491)
|+.||+|.|+|+|.+++++ ++||+|++++||++|..++| .+.++ .+...++||||+| ++.+++++++||+|+
T Consensus 106 l~~g~~v~V~G~v~~~~~g--e~ei~~~~i~vl~~~~~plP--~k~~~~~~~e~r~r~RyldL~~~~~~~~~~r~Rs~i~ 181 (493)
T 3a74_A 106 SDLGDIVGVRGTMFKTKVG--ELSIKVSSYEFLTKALRPLP--EKYHGLKDIEQRYRQRYLDLIMNPESKKTFITRSLII 181 (493)
T ss_dssp CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC--CC-----CHHHHHHTHHHHHHHCTHHHHHHHHHHHHH
T ss_pred CCCCCEEEEEEEEEeCCCC--cEEEEEEEEEEcccccCCCC--ccccCCCCHhhhhhcchhhhhcCHHHHHHHHHHHHHH
Confidence 9999999999999999875 89999999999999974444 55444 4555599999996 899999999999999
Q ss_pred HHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhH
Q 011197 156 YATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLN 235 (491)
Q Consensus 156 ~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~ 235 (491)
+++|+||.++||+||+||+|+++++++++++|.+ ++ ++|+.++||+||||||
T Consensus 182 ~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~-~~---------------------------~~~~~~~yLr~SpqLy 233 (493)
T 3a74_A 182 QSMRRYLDSHGYLEVETPMMHAVAGGAAARPFIT-HH---------------------------NALDMTLYMRIAIELH 233 (493)
T ss_dssp HHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEE-EE---------------------------TTTTEEEEECSCSHHH
T ss_pred HHHHHHHHhCCeEEEECCeEEecCCCCcccceEe-cc---------------------------cCCCceeEEecCHHHH
Confidence 9999999999999999999998877777899965 22 5679999999999999
Q ss_pred HH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc--
Q 011197 236 AE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFF-- 312 (491)
Q Consensus 236 lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~-- 312 (491)
|| ++++|++||||||||||||+++ .||+|||||||||++|+|++|+|+++|+||++ +++.+.+++. +.+.
T Consensus 234 lk~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d~~dlm~l~E~ll~~----l~~~v~~~~~--i~~~~~ 306 (493)
T 3a74_A 234 LKRLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYADFRDIMKLTENLIAH----IATEVLGTTK--IQYGEH 306 (493)
T ss_dssp HHHHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHH----HHHHHHSCSE--EEETTE
T ss_pred HHHHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCCHHHHHHHHHHHHHH----HHHHHhCCce--EeeCCE
Confidence 96 6899999999999999999995 59999999999999999999999999999999 9999887652 3322
Q ss_pred -----chhhcchhhhhhhhhhcCCC-ccccHHHHHHHHHHhccccccccccccccchHHhhhhccccccCccEEEEeCCC
Q 011197 313 -----NTWIEKGIIDRLSTVAERDF-VQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPK 386 (491)
Q Consensus 313 -----~~~~~~~~~~~l~~~~~~~~-~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~ 386 (491)
.+|.+.++.++++.+.+.++ ..++.+++.+++++.|.+++....+|..+...++.++.+. +. +|+||+|||.
T Consensus 307 ~i~~~~pf~rity~eai~~~~~~d~~~~~~~~~~~~~~~~~g~~~~~~~~~g~l~~~~~~~~ve~~-~~-~p~fv~dyP~ 384 (493)
T 3a74_A 307 LVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFGHIVNEFFEQKVEDK-LI-QPTFIYGHPV 384 (493)
T ss_dssp EEECCSSCEEEEHHHHHHHHTCCCTTSCCCHHHHHHHHHHTTCCCCTTCCHHHHHHHHHHHHTGGG-CC-SCEEEECCBG
T ss_pred eeccCCCcceeeHHHHHHHHhCCCCccccCHHHHHHHHHHcCCCCCCCcChhHHHHHHHHHHhhcc-cC-CcEEEECCCc
Confidence 23333344444444333333 3334444444444444433222234556666677665554 44 7999999999
Q ss_pred CCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc-----CCCccc---HHHHHHHHhcCCCCccc
Q 011197 387 EIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-----KLNRDS---YWWYLDLRHYGSVPHAG 458 (491)
Q Consensus 387 ~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~-----g~~~~~---~~~yl~~~~~G~pp~~G 458 (491)
+++||||+.++|+.++++||||++|+ ||+|||+|+||++.|++++++. ..+++. ++|||+|++||+|||||
T Consensus 385 ~~~pf~~~~~~dp~~~~~fDL~i~G~-Ei~~G~~el~d~~~q~~rf~~~~~~~~~~~~e~~~~d~~yl~al~yG~PPhgG 463 (493)
T 3a74_A 385 EISPLAKKNPDDPRFTDRFELFIVGR-EHANAFTELNDPIDQRQRFEEQLKEREQGNDEAHEMDEDFLEALEYGMPPTGG 463 (493)
T ss_dssp GGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHTTCTTSCCCCHHHHHHHHTCCCSEEE
T ss_pred ccCCccCcCCCCCCeEEEEEEEeCCe-EEecCcceeCCHHHHHHHHHHHHHHhhcCCchhhhccHHHHHHHhCCCCCcee
Confidence 99999988777778999999999998 9999999999999999998753 123333 29999999999999999
Q ss_pred eeccHHHHHHHHcCCCCcccccccCCCCC
Q 011197 459 FGLGFERLVQFATGVENIRDAIPFPRTPG 487 (491)
Q Consensus 459 ~glGidRL~m~l~g~~~Irdvi~FPr~~~ 487 (491)
||||||||+|++||.+||||||+||+.+.
T Consensus 464 ~glGiDRLvmlltg~~~IRdVi~FPr~~~ 492 (493)
T 3a74_A 464 LGIGVDRLVMLLTNSPSIRDVLLFPQMRH 492 (493)
T ss_dssp EEEEHHHHHHHHHTCSSGGGTSSSCCCCC
T ss_pred EEEcHHHHHHHHhCCCcHHhEeccCCCCC
Confidence 99999999999999999999999999874
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-94 Score=779.08 Aligned_cols=412 Identities=22% Similarity=0.355 Sum_probs=333.6
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
++++|++|... +.|++|+|+|||+++|++|+++|++|||++| .||||++++...|+.++. |+.||+|.|+
T Consensus 3 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~--l~~e~~V~V~ 72 (580)
T 1l0w_A 3 RTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREG--LVQLVAHPASPAYATAER--VRPEWVVRAK 72 (580)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTE--EEEEEECTTSTTHHHHTT--CCTTCEEEEE
T ss_pred cEEEHHHhHHH------hCCCEEEEEEEEEEEecCCCeEEEEEEECCe--eEEEEEeCChhHHHHHhc--CCCCcEEEEE
Confidence 67899999865 6899999999999999999999999999996 499999876434666667 9999999999
Q ss_pred EEEEecCC-----CceeEEEEEeeEEEEccCCC-CCCCCc------cccChhhhc-cCccccCCChHHHHHHHHHHHHHH
Q 011197 90 GNVVPSQG-----SKQKVELKVNKIVLVGKSDP-SYPIQK------KRVSREFLR-TKAHLRPRTNTFGAVARVRNALAY 156 (491)
Q Consensus 90 G~v~~~~~-----~~~~~el~~~~i~ils~~~~-~~P~~~------~~~~~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~ 156 (491)
|+|.+++. ++|++||+|++++|||+|.+ ++|+.+ +....+.+| ++||||+|++.++++|++||++++
T Consensus 73 G~v~~~~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~Rs~i~~ 152 (580)
T 1l0w_A 73 GLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIK 152 (580)
T ss_dssp EEEEECSSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccccccccCCHHHhhhhhHHHhcCHHHHHHHHHHHHHHH
Confidence 99999852 35689999999999999973 255544 323344455 999999999999999999999999
Q ss_pred HHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccc-ccccchhhH
Q 011197 157 ATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPA-FLTVSGQLN 235 (491)
Q Consensus 157 ~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~-~L~~Spql~ 235 (491)
++|+||.++||+||+||+|+++++||+++ |.+. ++ .+.... ||+||||||
T Consensus 153 ~iR~fl~~~gF~EVeTPiL~~s~~eGAr~-F~v~-~~---------------------------~~~~~~y~L~qSPQl~ 203 (580)
T 1l0w_A 153 AIWDFLDREGFVQVETPFLTKSTPEGARD-FLVP-YR---------------------------HEPGLFYALPQSPQLF 203 (580)
T ss_dssp HHHHHHHHTTCEECCCCSSBCCCSSSSCC-CEEE-CT---------------------------TSTTEEEECCSCSHHH
T ss_pred HHHHHHHhCCcEEEeCCEEecCCCCCCCC-cccc-cc---------------------------ccCCceeECccCHHHH
Confidence 99999999999999999999999998765 7552 22 112223 599999999
Q ss_pred HH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccch
Q 011197 236 AE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNT 314 (491)
Q Consensus 236 lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~ 314 (491)
|| ||++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||++ +++.+.+..
T Consensus 204 kq~Lmv~G~~rvfqI~~~FR~E~~~~~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~----i~~~v~~~~--------- 269 (580)
T 1l0w_A 204 KQMLMVAGLDRYFQIARCFRDEDLRADRQ-PDFTQLDLEMSFVEVEDVLELNERLMAH----VFREALGVE--------- 269 (580)
T ss_dssp HHHHHHTTCSEEEEEEEEECCCCCCSSCC-SEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHTCCC---------
T ss_pred HHHHHHhccCCeEEEeceeeCCCCCCCcC-CCccceeeeecCCCHHHHHHHHHHHHHH----HHHHHhCCc---------
Confidence 97 78999999999999999999976555 7999999999999999999999999999 988875421
Q ss_pred hhcchhhhhhhhhhcCCCccccHHHHHHHH--------------------------------------------------
Q 011197 315 WIEKGIIDRLSTVAERDFVQLSYTDAIELL-------------------------------------------------- 344 (491)
Q Consensus 315 ~~~~~~~~~l~~~~~~~~~~it~~ea~~~l-------------------------------------------------- 344 (491)
+..||+|+||.||++.+
T Consensus 270 -------------~~~pf~rity~eA~~~~g~dkpd~r~~~~~~d~~~~~~~~~~~~~~~~~~v~~i~~~~~~~r~~~~~ 336 (580)
T 1l0w_A 270 -------------LPLPFPRLSYEEAMERYGSDKPDLRFGLELKEVGPLFRQSGFRVFQEAESVKALALPKALSRKEVAE 336 (580)
T ss_dssp -------------CCSSCCEEEHHHHHHHHSSSSCCCSSCCCCEECGGGGSSSCCTHHHHSSEEEEEEESSCCCHHHHHH
T ss_pred -------------cCCCccEEEHHHHHHHhcCCCcccccccchhhhhhhhhccccccccccceeEEEeccCccCHHHHHH
Confidence 12356666666665543
Q ss_pred -----HHhccccccccccccc-cchHHhhh----------------------------------------------hccc
Q 011197 345 -----IKAKKKFEFLVKWGCD-LQSEHERY----------------------------------------------LTEE 372 (491)
Q Consensus 345 -----~~~~~~~~~~~~~g~~-l~~~~e~~----------------------------------------------l~~~ 372 (491)
++.|.+--..+.|+.+ +.+.++++ |++.
T Consensus 337 l~~~~~~~g~~~~~~~~~~~~~~~~~~~k~l~~~~~~l~~~~~~~~gd~~~~~~~~~~~~~~~Lg~lr~~l~~~~~lve~ 416 (580)
T 1l0w_A 337 LEEVAKRHKAQGLAWARVEEGGFSGGVAKFLEPVREALLQATEARPGDTLLFVAGPRKVAATALGAVRLRAADLLGLKRE 416 (580)
T ss_dssp HHHHHHHTSCSCCEEEEEETTEEESTTHHHHGGGHHHHHHHHCCCTTCEEEEEEESHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHcCCCcceEEEecCccccchhhhhhhHHHHHHHHHhCCCcCceEEEecCccchhhhhHHHHHHHHHHHhccccc
Confidence 1111100000112222 22212111 2232
Q ss_pred cccCccEEEEeCCCC------------CcccccccCC-------CC-Cc-eEEEEEEeCCeeEeechhhhcccHHHHHHH
Q 011197 373 AFGGCPVIVSDYPKE------------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGR 431 (491)
Q Consensus 373 ~~~~~p~~i~~~P~~------------~~pf~~~~~~-------~~-~~-~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~ 431 (491)
. .+|+||+|||.. ++||||+.++ ++ .+ +++||||+||+ ||+|||+|+||++.|+++
T Consensus 417 -~-~~p~fV~dfP~~~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~r 493 (580)
T 1l0w_A 417 -G-FRFLWVVDFPLLEWDEEEEAWTYMHHPFTSPHPEDLPLLEKDPGRVRALAYDLVLNGV-EVGGGSIRIHDPRLQARV 493 (580)
T ss_dssp -S-CCEEEEECCBSBCCCTTTSCCCBSSCTTBCBCSTTTTHHHHCGGGCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHH
T ss_pred -c-cCeEEEEcCCcccccccccccccccCCccCCCchhhhhhcCCccceeeeEEEEEeCCE-EEEeCeeecCCHHHHHHH
Confidence 2 379999999996 8999998765 34 25 89999999998 999999999999999999
Q ss_pred HHHcCCCccc----HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 432 LDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 432 ~~~~g~~~~~----~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
|+..|+++++ ++|||+|++||+|||||||||||||+|++||.+||||||+||++++.+.
T Consensus 494 f~~~g~~~ee~~~~~~~~L~al~yG~PPhgG~glGlDRLvMll~g~~sIRdVi~FP~~~~~~~ 556 (580)
T 1l0w_A 494 FRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGKD 556 (580)
T ss_dssp HHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSCB
T ss_pred HHHcCCChhHHHhHHHHHHHHHhcCCCCCceEEEcHHHHHHHHcCCCcHHeEecCCCCCCccc
Confidence 9999998776 7899999999999999999999999999999999999999999998764
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-94 Score=775.79 Aligned_cols=434 Identities=21% Similarity=0.332 Sum_probs=340.9
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc-cchhhhhhcCCCCCcEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA-EGYDQVKSGLITTGASIWI 88 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~-~~~~~~~~~~L~~gd~V~V 88 (491)
++++|++|... +.|++|+|+|||+++|++|+++|++|||++| .||||++++. ..|+.++. |+.||+|.|
T Consensus 2 rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~G~~~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~--l~~e~~V~V 71 (585)
T 1c0a_A 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREG--IVQVFFDPDRADALKLASE--LRNEFCIQV 71 (585)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTE--EEEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred ceeEHHHHHHH------hCCCEEEEEEEEEEEecCCCcEEEEEEECCe--eEEEEEeCCchHHHHHHhc--CCCCCEEEE
Confidence 56889999764 6899999999999999999999999999997 4999998653 23556667 999999999
Q ss_pred EEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCcc-ccChhhhccCccccCCChHHHHHHHHHHHHHHHHHH
Q 011197 89 QGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKK-RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHK 160 (491)
Q Consensus 89 ~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~-~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ 160 (491)
+|+|.+++. ++|++||+|++++|||+|. ++|++.. ..+.+...++||||+|++.++++|++||++++++|+
T Consensus 72 ~G~v~~~~~~~~n~~~~~geiEl~~~~i~vl~~a~-~lP~~~~~~~~~e~Rl~~R~LdLR~~~~~~~l~~Rs~i~~~iR~ 150 (585)
T 1c0a_A 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD-VLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRR 150 (585)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC-SCSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred EeEEEccCcccccccCCCccEEEEEeEEEEEeccC-CCCCCccccCCHhHhhhchHhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 999999865 3578999999999999997 3454433 344444449999999999999999999999999999
Q ss_pred HHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HH
Q 011197 161 FFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TY 239 (491)
Q Consensus 161 ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~ 239 (491)
||.++||+||+||+|+++++||+++ |.|. ++. ..++|| ||+|||||||| ||
T Consensus 151 fl~~~gFlEVeTPiL~~s~~eGAr~-F~v~-~~~----------------------~~~~~y----~L~qSPQl~kq~Lm 202 (585)
T 1c0a_A 151 FMDDHGFLDIETPMLTKATPEGARD-YLVP-SRV----------------------HKGKFY----ALPQSPQLFKQLLM 202 (585)
T ss_dssp HHHHTTCEECCCCSSBCCCSSSSCC-CEEE-CSS----------------------STTCEE----ECCSCSHHHHHHHH
T ss_pred HHHhCCcEEEeCCEEecCCCCCCcc-ceec-ccc----------------------cCCceE----eCccCHHHHHHHHH
Confidence 9999999999999999999998766 7553 221 001232 59999999997 78
Q ss_pred hccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccccch--
Q 011197 240 ATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKE---DMDFFNT-- 314 (491)
Q Consensus 240 ~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~---~l~~~~~-- 314 (491)
++|++||||||||||||+++++|| ||||||||||+|+|++|+|+++|+||++ +++.+.+.+.. .+.+...
T Consensus 203 v~G~~rvfqI~~~FR~E~~~t~r~-pEFT~lE~e~af~d~~dvm~~~E~li~~----i~~~v~~~~~~~f~r~ty~ea~~ 277 (585)
T 1c0a_A 203 MSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVRH----LWLEVKGVDLGDFPVMTFAEAER 277 (585)
T ss_dssp HTTCCEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCCHHHHHHHHHHHHHH----HHHHHHSCCCCSCCEEEHHHHHH
T ss_pred hcCCCceEEEeceeecCCCCCCcC-cccceeeeeecCCCHHHHHHHHHHHHHH----HHHHHhCCCccccceeeHHHHHH
Confidence 999999999999999999976555 6999999999999999999999999999 88887654321 0111000
Q ss_pred ---------------------hhcchh---hhhhhh----h--h----cCCCccccHHHHHHHHHHhccc-ccccccccc
Q 011197 315 ---------------------WIEKGI---IDRLST----V--A----ERDFVQLSYTDAIELLIKAKKK-FEFLVKWGC 359 (491)
Q Consensus 315 ---------------------~~~~~~---~~~l~~----~--~----~~~~~~it~~ea~~~l~~~~~~-~~~~~~~g~ 359 (491)
+...++ .+.+.+ + + +.+|++.+++++.+++++.|.+ +. .+.|+.
T Consensus 278 ~~g~dkpd~r~~~~l~d~~~~~~~~~f~~~~~~~~~~~~~~~~i~~~~~~~~~r~~~~~l~~~~~~~g~~~~~-~~~~~~ 356 (585)
T 1c0a_A 278 RYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLA-YIKVNE 356 (585)
T ss_dssp HHSCSSCCTTSCCCEEECHHHHTTCSCHHHHHHHHCTTEEEEEEEETTGGGCCHHHHHHHHHHHHHTTCSCCC-EEEESC
T ss_pred HhcCCCccccCCceeEEehhhhccCCcceehhhhhccCceEEEEEccccCccCHhhHHHHHHHHHHcCCCCce-eEEecc
Confidence 000000 000000 0 0 1236777888888888876532 10 011221
Q ss_pred ------ccchHHhhh-----------------------------------------------hccccccCccEEEEeCCC
Q 011197 360 ------DLQSEHERY-----------------------------------------------LTEEAFGGCPVIVSDYPK 386 (491)
Q Consensus 360 ------~l~~~~e~~-----------------------------------------------l~~~~~~~~p~~i~~~P~ 386 (491)
++.+.++++ +++... .+|+||+|||.
T Consensus 357 ~~~~~~~~~~~~~k~l~~~~~~~l~~~~~~~~~d~~~~~~~~~~~~~~~lG~lr~~l~~~~~lve~~~-~~p~fV~dfP~ 435 (585)
T 1c0a_A 357 RAKGLEGINSPVAKFLNAEIIEDILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESK-WAPLWVIDFPM 435 (585)
T ss_dssp GGGGGGGEECTTGGGSCHHHHHHHHHHTTCCTTCEEEEEEEEHHHHHHHHHHHHHHHHHHTTCSCSSC-CCEEEEECCBS
T ss_pred cccccccccchhhhhcCHHHHHHHHHHhCCCcCcEEEEecCcccchhhhhHHHHHHHHHHhCcccccc-cccEEEEeCCc
Confidence 121111111 222212 27999999999
Q ss_pred C-----------CcccccccCC-------CC-Cc-eEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCccc----H
Q 011197 387 E-----------IKAFYMRQND-------DG-RT-VAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS----Y 442 (491)
Q Consensus 387 ~-----------~~pf~~~~~~-------~~-~~-~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~----~ 442 (491)
. ++||||+.++ ++ .+ +++||||+||+ ||+|||+|+||++.|+++|+..|+++++ |
T Consensus 436 ~~~~~~~~~~a~~~PFt~~~~~dl~~l~~dp~~~~a~~fDL~i~G~-Ei~~Gs~ri~d~~~q~~rf~~~g~~~ee~~~~~ 514 (585)
T 1c0a_A 436 FEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVFGILGINEEEQREKF 514 (585)
T ss_dssp EEECSSSCEEESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCHHHHHHHH
T ss_pred cccccccccccccCCccCCCchhhhhhccCCcceeeeEEEEEECCE-EEeeeeeecCCHHHHHHHHHHcCCChHHHHhhH
Confidence 6 8999998765 34 35 89999999998 9999999999999999999999998876 8
Q ss_pred HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 443 WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 443 ~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
+|||+|++||+|||||||||||||+|+|||.+||||||+||++++.+.
T Consensus 515 ~~yL~al~yG~PPhgG~glGlDRLvmlltg~~sIRdVi~FPr~~~~~~ 562 (585)
T 1c0a_A 515 GFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAAC 562 (585)
T ss_dssp HHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTSCB
T ss_pred HHHHHHHhcCCCCceeEEEcHHHHHHHHcCCCcHHheecCCCCCCccc
Confidence 999999999999999999999999999999999999999999998764
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-83 Score=692.24 Aligned_cols=438 Identities=23% Similarity=0.288 Sum_probs=325.6
Q ss_pred CCCCCCCccc-ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhhh
Q 011197 1 MGSKVGEFRK-KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVK 76 (491)
Q Consensus 1 ~~~~~~~~~~-~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~~ 76 (491)
|-|.++.|.. +++|.+|... +.|++|+|+|||+++|++ +|++|||++| .||||++++.. .++.++
T Consensus 1 ~~~~~~~~~~rt~~~~~l~~~------~~g~~V~l~GwV~~~R~~---~Fi~LrD~~g--~iQvv~~~~~~~~~~~~~~~ 69 (617)
T 4ah6_A 1 MIPEFSSFVVRTNTCGELRSS------HLGQEVTLCGWIQYRRQN---TFLVLRDFDG--LVQVIIPQDESAASVKKILC 69 (617)
T ss_dssp --CCCSCSSSCSSCGGGCCGG------GTTCEEEEEEEECCCCTT---TEEEEECSSC--EEEEECCCSSSSHHHHHHHH
T ss_pred CCccccccccCceEHHHhHHH------hCCCEEEEEEEeeeecCe---EEEEEEeCCc--CEEEEEeCCcCcHHHHHHHh
Confidence 4456666665 6999999875 689999999999999975 5999999996 49999987642 355677
Q ss_pred hcCCCCCcEEEEEEEEEecCC-------CceeEEEEEeeEEEEccCCCCCCCCccccC--hhhhc-cCccccCCChHHHH
Q 011197 77 SGLITTGASIWIQGNVVPSQG-------SKQKVELKVNKIVLVGKSDPSYPIQKKRVS--REFLR-TKAHLRPRTNTFGA 146 (491)
Q Consensus 77 ~~~L~~gd~V~V~G~v~~~~~-------~~~~~el~~~~i~ils~~~~~~P~~~~~~~--~~~~r-~~~~l~~R~~~~~~ 146 (491)
. |+.||+|.|+|+|++++. .+|++||+|++++|||+|. ++|++.+.+. .+.+| ++||||+|++.+++
T Consensus 70 ~--l~~e~~V~V~G~v~~~~~~~~n~~~~tgeiEl~~~~i~vL~~a~-~lP~~~~~~~~~~ee~Rl~~R~LdLR~~~~~~ 146 (617)
T 4ah6_A 70 E--APVESVVQVSGTVISRPAGQENPKMPTGEIEIKVKTAELLNACK-KLPFEIKNFVKKTEALRLQYRYLDLRSFQMQY 146 (617)
T ss_dssp H--CCSSCEEEEEEEEEECSTTCCCTTSTTTTEEEEEEEEEEEECBC-CCSSCTTTTCCSCHHHHHHTHHHHTTSHHHHH
T ss_pred c--CCCCCEEEEEEEEEeCCccccCccCCCCcEEEEEeEEEEeecCC-CCCcccccccccChhhhccceeeeecchHHHH
Confidence 7 999999999999998643 2468999999999999998 7888765432 34455 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHh-hCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 147 VARVRNALAYATHKFFQ-ENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
+|++||++++++|+||. ++||+||+||+|++++++|+.+ |.+.+ +.++..
T Consensus 147 ~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~GA~~-F~v~~----------------------------~~~g~~ 197 (617)
T 4ah6_A 147 NLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPGGAKE-FLVPS----------------------------REPGKF 197 (617)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCSSSCC-CEEEC----------------------------SSTTCE
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCCCCcC-ceecc----------------------------ccCCcc
Confidence 99999999999999996 7999999999999988887764 75532 123566
Q ss_pred cccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHH--
Q 011197 226 AFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYIL-- 302 (491)
Q Consensus 226 ~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~-- 302 (491)
+||+||||+||| ||++|++||||||||||||+++ .+|+|||||||||++|+|++|+|+++|+|+++ +++.+.
T Consensus 198 ~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~E~~~-t~r~pEFt~lE~e~af~d~~d~m~~~E~l~~~----~~~~~~~~ 272 (617)
T 4ah6_A 198 YSLPQSPQQFKQLLMVGGLDRYFQVARCYRDEGSR-PDRQPEFTQIDIEMSFVDQTGIQSLIEGLLQY----SWPNDKDP 272 (617)
T ss_dssp EECCSSTTHHHHHHHHTSCSEEEEEEEEECCCSSC-SSSCSEEEEEEEEEESCCHHHHHHHHHHHHHH----HSCSSSCC
T ss_pred cccccCHHHHHHHHHhcccCcEEEEEhheecccCC-CCcCcceecceeeecCCCHHHHHHHHHHHHHH----HHHHhcCc
Confidence 799999999997 6899999999999999999996 56699999999999999999999999999999 765321
Q ss_pred -----------------hcCcccccccchhhc-------c--hhh-hhhhh---------hhcC--CCccccHHHHHHHH
Q 011197 303 -----------------DNCKEDMDFFNTWIE-------K--GII-DRLST---------VAER--DFVQLSYTDAIELL 344 (491)
Q Consensus 303 -----------------~~~~~~l~~~~~~~~-------~--~~~-~~l~~---------~~~~--~~~~it~~ea~~~l 344 (491)
++.++|+.+--...+ . .++ ..+.+ +.+. .+.|-..++..+..
T Consensus 273 ~~~pf~r~ty~eA~~~ygsDkPDlR~~~ei~DVtdif~~s~FkVF~~~~~~~~g~VkAI~vpg~a~~lsRK~id~L~e~a 352 (617)
T 4ah6_A 273 VVVPFPTMTFAEVLATYGTDKPDTRFGMKIIDISDVFRNTEIGFLQDALSKPHGTVKAICIPEGAKYLKRKDIESIRNFA 352 (617)
T ss_dssp CCSSCCEEEHHHHHHHTSSSSCCSSSCCCEEECGGGGSSCCCHHHHHHTTSTTEEEEEEEEESCTTTSCTTTHHHHHHHH
T ss_pred cCCCceEeEHHHHHHHHcCCCCccccCcccccHHHHhccCCchhHhhhhhcCCCeEEEEEcCCCccccchhhHHHHHHHH
Confidence 112223322100000 0 000 00000 0000 01111122222222
Q ss_pred HH------------------------------------hcccccccc--cccc---------ccchH-Hhhh------hc
Q 011197 345 IK------------------------------------AKKKFEFLV--KWGC---------DLQSE-HERY------LT 370 (491)
Q Consensus 345 ~~------------------------------------~~~~~~~~~--~~g~---------~l~~~-~e~~------l~ 370 (491)
+. .+.+-.+.+ ..|. .+... .+.. |.
T Consensus 353 k~~~g~ggl~~~~~~d~~~~~~I~Kflsee~~~~L~e~l~a~~GDlIff~Ag~~~~v~~~LG~LR~~l~~~L~~~~~~l~ 432 (617)
T 4ah6_A 353 ADHFNQEILPVFLNANRNWNSPVANFIMESQRLELIRLMETQEEDVVLLTAGEHNKACSLLGKLRLECADLLETRGVVLR 432 (617)
T ss_dssp HHSSCCCEEEECSSTTTTSSCTTHHHHHHHHHHHHHHHHTCCSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHhcCCceEEEEEecCCccccchhhhcCHHHHHHHHHHhCCCCCCEEEEecCChHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 22 111100000 0000 00000 1111 12
Q ss_pred cccccCccEEEEeCCCC-------------CcccccccCCC-------C--CceEEEEEEeCCeeEeechhhhcccHHHH
Q 011197 371 EEAFGGCPVIVSDYPKE-------------IKAFYMRQNDD-------G--RTVAAMDMLVPRIGELIGGSQREERLEYL 428 (491)
Q Consensus 371 ~~~~~~~p~~i~~~P~~-------------~~pf~~~~~~~-------~--~~~~~fdl~~~G~gEi~~G~~r~~~~~~~ 428 (491)
++- ...++||+|||.. ++||+|+..+| + ..+.+|||++||+ ||+|||+|+|+++.|
T Consensus 433 ~~~-~~~f~WvvdfPlf~~~~~~~~~~~a~HhPFT~P~~~d~~~l~~~p~~~~a~~ydlv~~g~-El~~gs~ri~~~~~q 510 (617)
T 4ah6_A 433 DPT-LFSFLWVVDFPLFLPKEENPRELESAHHPFTAPHPSDIHLLYTEPKKARSQHYDLVLNGN-EIGGGSIRIHNAELQ 510 (617)
T ss_dssp CTT-SCCEEEEECCBSBCCCSSSSSSCCBSSCSSCCCCCTTSTHHHHSTTSSBCCCEEEEETTE-EEEEEECCCCSHHHH
T ss_pred CCC-CeEEEEEeccCCcCCccccccceeeccCCcCCCChhhHHHhhcChhhhhhceEEEEECCE-EEeeeeEEcCCHHHH
Confidence 111 1269999999983 78999987543 2 2578999999997 999999999999999
Q ss_pred HHHHH-HcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCC
Q 011197 429 EGRLD-ELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGS 488 (491)
Q Consensus 429 ~~~~~-~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~ 488 (491)
+++++ ..|.+++.++|||+|++||+|||||+|+|+|||+|+++|.+||||||+||++...
T Consensus 511 ~~~f~~~~~~~~~~~~~~l~a~~~G~pphgG~a~G~dRlvml~~g~~~irdvi~fP~~~~~ 571 (617)
T 4ah6_A 511 RYILATLLKEDVKMLSHLLQALDYGAPPHGGIALGLDRLICLVTGSPSIRDVIAFPKSFRG 571 (617)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHTBTCCCEEEEEEEHHHHHHHHHTCSSGGGSSSSCCCSSS
T ss_pred HHHHHHhhccchhhHHHHHHHHHcCCCCCCceeecHHHHHHHHcCCCchheEEecCCCCCc
Confidence 99998 7888888899999999999999999999999999999999999999999998654
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-74 Score=589.39 Aligned_cols=303 Identities=18% Similarity=0.166 Sum_probs=238.8
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC-CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 138 RPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE-GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 138 ~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e-g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
+.|++ .+++|++||+|++++|+||.++||+||+||+|++++++ +.+++|.+.+..+
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~---------------------- 83 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGP---------------------- 83 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCS----------------------
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCc----------------------
Confidence 44555 88999999999999999999999999999999998876 5679997632211
Q ss_pred ccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSC 295 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~ 295 (491)
..-.+.++||+|||||||| ++++|++||||||||||||++ +.||+|||||||||++|+|++|+|+++|+||++
T Consensus 84 --~~~~~~~~yL~~Spql~~k~l~~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d~~d~m~~~E~li~~--- 157 (345)
T 3a5y_A 84 --GHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQ--- 157 (345)
T ss_dssp --TTSCCEEEEECSCSHHHHHHHHHTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHH---
T ss_pred --ccccCCCEeecCCHHHHHHHHHHcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCCHHHHHHHHHHHHHH---
Confidence 0001367899999999997 899999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccc-cccchHHhhhhcc---
Q 011197 296 MQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWG-CDLQSEHERYLTE--- 371 (491)
Q Consensus 296 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g-~~l~~~~e~~l~~--- 371 (491)
+++. .+|.+.++.+++.+++|.+.+.++++++.+++++.|... +.++ .++...+++++.+
T Consensus 158 -v~~~------------~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~---~~~~~~~~~~~~e~~l~~~ve 221 (345)
T 3a5y_A 158 -VLDC------------PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSN---VADTEEDRDTLLQLLFTFGVE 221 (345)
T ss_dssp -HHCC------------CCCEEEEHHHHHHHHTCCCTTCCC---------------------------HHHHHHHHHHTG
T ss_pred -HHcC------------CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcc---cCCCcCCHhHHHHHHHHHHHH
Confidence 7751 134455666777777777666678888877777766430 2333 3566666665542
Q ss_pred ccc-cCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHc-------CCCcccH-
Q 011197 372 EAF-GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDEL-------KLNRDSY- 442 (491)
Q Consensus 372 ~~~-~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~-------g~~~~~~- 442 (491)
+.+ ..+|+||+|||..++||++..++++.++++||||++|+ ||+|||+|++++++|++++++. |+++..+
T Consensus 222 ~~lg~~~p~fv~dyP~~~~~~~~~~~~~~~~a~~fDL~~~G~-Ei~~G~~rl~d~~~q~~rf~~~~~~~~~~g~~~~~~d 300 (345)
T 3a5y_A 222 PNIGKEKPTFVYHFPASQASLAQISTEDHRVAERFEVYYKGI-ELANGFHELTDAREQQQRFEQDNRKRAARGLPQHPID 300 (345)
T ss_dssp GGSSSSSCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHHHHHHHHTTCCCCCCC
T ss_pred HHcCCCCEEEEECCChhhChhhCCCCCCCCeEEEEEEEECCE-EEeeeEEEeCCHHHHHHHHHHHHHHHHhcCCChhhHH
Confidence 223 24799999999999999876555666889999999998 9999999999999999999875 8888888
Q ss_pred HHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011197 443 WWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 443 ~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
+|||+|++||+|||||||||||||+|++||.+||||||+|||+.
T Consensus 301 ~~yl~al~yG~PPhgG~glGiDRLvmll~g~~~IRdVi~FPr~~ 344 (345)
T 3a5y_A 301 QNLIEALKVGMPDCSGVALGVDRLVMLALGAETLAEVIAFSVDR 344 (345)
T ss_dssp HHHHHHHHHCCCSEEEEEEEHHHHHHHHHTCSSGGGGSSSCTTT
T ss_pred HHHHHHHhcCCCCCcEEEEcHHHHHHHHcCCCcHheEecCCccc
Confidence 79999999999999999999999999999999999999999974
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-67 Score=525.41 Aligned_cols=279 Identities=27% Similarity=0.458 Sum_probs=244.5
Q ss_pred cCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeecc--------CCCCCCCceeeeecCCCcccccCCCC
Q 011197 133 TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS--------DCEGAGEQFCVTTLIPSSREAAESPV 204 (491)
Q Consensus 133 ~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~--------~~eg~~~~F~vt~~~~~~~~~~~~~~ 204 (491)
+||++++|++ +++++++|+++++++|+||.++||+||+||+|+++ .+|+ +++|.+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~--------------- 63 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEV--------------- 63 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEE---------------
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEE---------------
Confidence 4799999999 99999999999999999999999999999999999 7887 888865
Q ss_pred CCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCC--CCCCcccccccceeeEeccCCHHH
Q 011197 205 DAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAEN--SNTSRHLAEFWMIEPELAFADLKD 281 (491)
Q Consensus 205 ~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~--~~t~rHl~EFtmlE~e~~~~~~~~ 281 (491)
+|+++++||++|||+|+| ++++|++|||+||||||+|+ +++.||+|||||||+|++|.|++|
T Consensus 64 ---------------~~~~~~~~L~~Spe~~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~~~~ 128 (294)
T 1nnh_A 64 ---------------EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMED 128 (294)
T ss_dssp ---------------EETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHH
T ss_pred ---------------EcCCCCEEeccChHHHHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCCHHH
Confidence 466888999999999996 67788999999999999999 877899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccccccccccc
Q 011197 282 DMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDL 361 (491)
Q Consensus 282 lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l 361 (491)
+|+++|+|+++ +++.+.+....+++ .++. |+|++|.||++ + ||.
T Consensus 129 l~~~~e~l~~~----l~~~~~~~~~~~i~----------------~~~~-~~r~~y~ea~~---~----------~g~-- 172 (294)
T 1nnh_A 129 IMRLIERLVYG----LFRKAEEWTGREFP----------------KTKR-FEVFEYSEVLE---E----------FGS-- 172 (294)
T ss_dssp HHHHHHHHHHH----HHHHHHHHHSSCCC----------------CCSS-CEEEEHHHHHH---H----------TSS--
T ss_pred HHHHHHHHHHH----HHHHHHhhhccccc----------------cCCC-ceEeEHHHHHH---H----------hCC--
Confidence 99999999999 87766431111111 1233 89999999985 2 222
Q ss_pred chHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeC-CeeEeechhhhcccHHHHHHHHHHcCCCcc
Q 011197 362 QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVP-RIGELIGGSQREERLEYLEGRLDELKLNRD 440 (491)
Q Consensus 362 ~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~-G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~ 440 (491)
.+++ .+. .. .|+||+||| +|||++. |+.++++||+|++ |+|||+|||+|+++++.|.++++..|++++
T Consensus 173 --~~er--~~~-~~-~P~~v~~~P---~pf~~~~--d~~~~~~~Dl~~~~g~~Ei~~g~~r~~d~~~l~~~~~~~g~~~~ 241 (294)
T 1nnh_A 173 --DEKA--SQE-ME-EPFWIINIP---REFYDRE--VDGFWRNYDLILPYGYGEVASGGEREWEYEKIVAKIRKAGLNED 241 (294)
T ss_dssp --HHHH--HHH-CS-SCEEEECCC---CCTTBCE--ETTEECEEEEEETTTTEEEEEEEEBCCCHHHHHHHHHHTTCCGG
T ss_pred --hHhh--hhh-cC-CCEEEEcCC---hHHhCCC--CCCeEEEEEEEECCCcEEEecCeeecCCHHHHHHHHHHcCCCcc
Confidence 2233 222 23 799999999 9999876 6678999999999 999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCC-CccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 441 SYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 441 ~~~~yl~~~~~G~p-p~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
.|+|||+|++||+| ||||||||+|||+|+++|.+|||||++||+.++++.
T Consensus 242 ~~~~~l~~l~~G~p~P~~G~glGieRL~mll~g~~~Irdvi~Fp~~~~~~~ 292 (294)
T 1nnh_A 242 SFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIPA 292 (294)
T ss_dssp GGHHHHHHHHTTCCCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTSCC
T ss_pred CHHHHHHHHhcCCCCCceEEEEcHHHHHHHHhCCCCHHHEEeccCCCCccc
Confidence 99999999999999 999999999999999999999999999999999874
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-24 Score=215.93 Aligned_cols=170 Identities=15% Similarity=0.165 Sum_probs=123.8
Q ss_pred cCCCceeEEEEEeeEEEEccCCCCCCCCccccChhhhccCccccCCChHHHHHHHH-----HHHHHHHHHHHHhhCCcEE
Q 011197 95 SQGSKQKVELKVNKIVLVGKSDPSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARV-----RNALAYATHKFFQENGFIW 169 (491)
Q Consensus 95 ~~~~~~~~el~~~~i~ils~~~~~~P~~~~~~~~~~~r~~~~l~~R~~~~~~~~~~-----Rs~i~~~iR~ff~~~~F~E 169 (491)
.+++.|++||+|++++||++|..++|++.++. ...+++||||+|++.++++++. ++++.+.+|++|.+.||.|
T Consensus 20 ~~~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~--~~~l~~r~l~~R~~~~~~i~~~g~~~~~~~i~~~ir~~l~~~Gf~E 97 (290)
T 3qtc_A 20 GASAPALTKSQTDRLEVLLNPKDEISLNSGKP--FRELESELLSRRKKDLQQIYAEERENYLGKLEREITRFFVDRGFLE 97 (290)
T ss_dssp ----CCCCHHHHHHHHHHCCTTCC----CCSC--HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCEE
T ss_pred ccCCCceEEEEhhhhhhhccCCCCCCCCcchh--hhhhhhHHHHhccchHHHHhccccccHHHHHHHHHHHHHHHCCCEE
Confidence 34456789999999999999987788876543 2366899999999999999999 9999999999999999999
Q ss_pred eecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccc--cchhhHHHHH--h---cc
Q 011197 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT--VSGQLNAETY--A---TA 242 (491)
Q Consensus 170 V~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~--~Spql~lql~--~---~g 242 (491)
|.||+|++..+.. .++ ++..++ ......+++...+|+ +||+++..+. . .+
T Consensus 98 V~Tp~l~~~~~~~--~~~-~~~~~p--------------------~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~ 154 (290)
T 3qtc_A 98 IKSPILIPLEYIE--RMG-IDNDTE--------------------LSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPD 154 (290)
T ss_dssp ECCCSEEETHHHH--HTT-CCTTSS--------------------GGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCS
T ss_pred EECCceeeHHHHH--hcC-CCcCCc--------------------hhhhheeeCCCeeEcccChHHHHHHHHHhhccCCC
Confidence 9999999875321 000 110000 000013456778999 9999997542 2 45
Q ss_pred CCceEEEccccccCCCCCCcccccccceeeEeccCC--HHHHHHHHHHHH
Q 011197 243 LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LKDDMACATAYL 290 (491)
Q Consensus 243 ~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~~lm~~~e~li 290 (491)
..|+||||+|||+|+. +.+|++||||+|+++++.+ +.++..++++++
T Consensus 155 p~rlfeiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll 203 (290)
T 3qtc_A 155 PIKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFL 203 (290)
T ss_dssp SEEEEEEEEEECCCSC-SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHH
T ss_pred CeEEEEEcCEEecCCC-CCcCcchheEEEEEEEcCChHHHHHHHHHHHHH
Confidence 6899999999999976 6789999999999999864 555555444433
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7e-21 Score=186.00 Aligned_cols=277 Identities=12% Similarity=0.031 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHHHh-----hCCcEEeecceeeccCCCCC------CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 147 VARVRNALAYATHKFFQ-----ENGFIWISSPIITASDCEGA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~-----~~~F~EV~TPiL~~~~~eg~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-++-....+..+++||. +.|+++|..|+++....+=+ -++-.++..
T Consensus 4 ~~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~----------------------- 60 (330)
T 12as_A 4 AYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVK----------------------- 60 (330)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCS-----------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecc-----------------------
Confidence 35667789999999999 89999999999998544311 111111000
Q ss_pred CccccccCcccccccchhhHHHH-Hhc-cC---CceEEEccccccCCC-CCCcccccccceeeEeccCCHHHHHHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNAET-YAT-AL---SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACATAY 289 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~lql-~~~-g~---~rvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~l 289 (491)
+.=+..+-..+|--.|||+ +.. +| +.+|+-.++-|.|+. .+.+|.-+|+|.|||......+..|+..++.
T Consensus 61 ----~~~~~~~eivhSLaKWKR~aL~~y~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~~~R~~~~Lk~t 136 (330)
T 12as_A 61 ----ALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKST 136 (330)
T ss_dssp ----SSTTCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHH
T ss_pred ----cCCCceEEEeeeHHHHHHHHHHhCCCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccccchHHHHHHHH
Confidence 0114566788999999984 433 57 899999999998654 5799999999999999998888888888998
Q ss_pred HHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhh
Q 011197 290 LQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYL 369 (491)
Q Consensus 290 i~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l 369 (491)
++. +...+..... +.... + .+...+..++..+|.+|+.+.+ +..-..+-|..+
T Consensus 137 V~~----Iy~~ik~tE~----~~~~~----y--~l~p~Lp~~i~fitsqeL~~~Y-------------P~lt~keRE~~i 189 (330)
T 12as_A 137 VEA----IWAGIKATEA----AVSEE----F--GLAPFLPDQIHFVHSQELLSRY-------------PDLDAKGRERAI 189 (330)
T ss_dssp HHH----HHHHHHHHHH----HHHHH----S--CCCCCSCSSCEEEEHHHHHHHS-------------SSSCHHHHHHHH
T ss_pred HHH----HHHHHHHHHH----HHHHH----h--ccCcCCCCceEEEeHHHHHHHc-------------CCCChHHHHHHH
Confidence 887 6655533210 00000 0 0112245567778888876542 212223344455
Q ss_pred ccccccCccEEEEeCCCCCcc--cccccCCC-CCce---------EEEEEEe-----CCeeEeechhhhcccHHHHHHHH
Q 011197 370 TEEAFGGCPVIVSDYPKEIKA--FYMRQNDD-GRTV---------AAMDMLV-----PRIGELIGGSQREERLEYLEGRL 432 (491)
Q Consensus 370 ~~~~~~~~p~~i~~~P~~~~p--f~~~~~~~-~~~~---------~~fdl~~-----~G~gEi~~G~~r~~~~~~~~~~~ 432 (491)
+..+ .+|||++.|..++- ++..+.+| +.+. .+.||++ .+..||.+++.| -+++.+.+++
T Consensus 190 ~ke~---gaVFii~IG~~L~~g~~HD~RaPDYDDW~t~~~~~~~gLNGDilvw~~vl~~a~ElSSMGIR-Vd~~~L~~QL 265 (330)
T 12as_A 190 AKDL---GAVFLVGIGGKLSDGHRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAFELSSMGIR-VDADTLKHQL 265 (330)
T ss_dssp HHHH---SEEEEECCSSCCSSSCCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEEEEEEEEEB-CCHHHHHHHH
T ss_pred HHhh---CCEEEEecCCccCCCCcCcCcCCCCCCccccccccccCccceEEEeccccCceeEEecceEE-eCHHHHHHHH
Confidence 5443 59999999876431 22222222 2344 7999999 466799999999 8999999999
Q ss_pred HHcCCCcccHHHHHHHHhcCC-CCccceeccHHHHHHHHcCCCCcccccc
Q 011197 433 DELKLNRDSYWWYLDLRHYGS-VPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 433 ~~~g~~~~~~~~yl~~~~~G~-pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
+..|..+....+|.+++..|. |++.|.|||..||+|+|++..+|-+|++
T Consensus 266 ~~~g~~er~~~~yh~~ll~g~LP~TiGGGIGQSRLcmflL~k~HIGEVQ~ 315 (330)
T 12as_A 266 ALTGDEDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQA 315 (330)
T ss_dssp HHHTCTTGGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSC
T ss_pred HHcCCChhhccHHHHHHHcCCCCccccccccHHHHHHHHhccchhheeec
Confidence 999988777788999998885 9999999999999999999999999986
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-18 Score=167.68 Aligned_cols=189 Identities=18% Similarity=0.251 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCC-C--CCC---CceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDC-E--GAG---EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-e--g~~---~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
..++.+.+|++|...||.||.||.|++... + +.. +.+.+ .+..+.
T Consensus 73 ~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~-----------------------------~npl~e 123 (288)
T 3dsq_A 73 LLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQ-----------------------------VFWLDG 123 (288)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTT-----------------------------SCEEET
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEe-----------------------------eccccc
Confidence 367899999999999999999999998431 0 000 01100 011123
Q ss_pred ccccc--cchhhHH--HHHhccCC---ceEEEccccccCCCCCCcccccccceeeEeccCC----HHHHHHHHHHHHHHH
Q 011197 225 PAFLT--VSGQLNA--ETYATALS---NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD----LKDDMACATAYLQLY 293 (491)
Q Consensus 225 ~~~L~--~Spql~l--ql~~~g~~---rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~----~~~lm~~~e~li~~~ 293 (491)
..+|+ .+|.+.. +.....-+ |+|+||+|||+|.. +..|.+||+|+|++....+ +.+++.+++++++.
T Consensus 124 ~~~LRp~l~p~l~~~~r~~~~~~~~PlrlfeiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~- 201 (288)
T 3dsq_A 124 KKCLRPMLAPNLYTLWRELERLWDKPIRIFEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEA- 201 (288)
T ss_dssp TEEECSCSHHHHHHHHHHHTTTSCSCEEEEEEEEEECSCCS-SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHH-
T ss_pred chhhhhcChHHHHHHHHHHHhCCCCCEEEEEEeeEEecCCC-CCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHH-
Confidence 45676 3465542 32323233 89999999999987 5789999999999997652 33333333333222
Q ss_pred HHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhcccc
Q 011197 294 SCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 373 (491)
Q Consensus 294 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~ 373 (491)
.|++
T Consensus 202 -----------------------------------------------------LGl~----------------------- 205 (288)
T 3dsq_A 202 -----------------------------------------------------AGIR----------------------- 205 (288)
T ss_dssp -----------------------------------------------------HTCC-----------------------
T ss_pred -----------------------------------------------------cCCC-----------------------
Confidence 1110
Q ss_pred ccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcC-
Q 011197 374 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG- 452 (491)
Q Consensus 374 ~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G- 452 (491)
...+ +. | . ....+.++|++++|. ||++|+.+.+..+. ++|
T Consensus 206 ---~~~~-~~-~---------s--~e~~~~~~~l~~~~~-eig~~Gv~p~vl~~----------------------~~gi 246 (288)
T 3dsq_A 206 ---EFEL-VT-E---------S--SVVYGDTVDVMKGDL-ELASGAMGPHFLDE----------------------KWEI 246 (288)
T ss_dssp ---CCEE-EE-C---------C--CCSSCCCEEEEETTE-EEEEEEEESCTTTT----------------------TTTC
T ss_pred ---CcEE-ec-C---------C--cceEEEEEEEEeCCE-EEEEEEecHHHHHH----------------------hcCC
Confidence 0000 00 0 0 001245688999996 99999966654421 568
Q ss_pred CCCccceeccHHHHHHHHcCCCCcccccccCCC
Q 011197 453 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRT 485 (491)
Q Consensus 453 ~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~ 485 (491)
.||++|||||+|||+|+++|.+|||++..-..+
T Consensus 247 ~~~~~gfglglerl~m~~~g~~~iR~~~~~~~~ 279 (288)
T 3dsq_A 247 FDPWVGLGFGLERLLMIREGTQHVQSMARSLSY 279 (288)
T ss_dssp CSCEEEEEEEHHHHHHHHHTCSCGGGGSSCSSE
T ss_pred CCCeEEEEECHHHHHHHHcCCchhhcCCCCccc
Confidence 489999999999999999999999998765443
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.3e-16 Score=160.19 Aligned_cols=133 Identities=14% Similarity=0.058 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc--ccccCcc--c
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS--QDFFEKP--A 226 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~f~~~--~ 226 (491)
.+++++.+|++|..+||.||.+|.+.+..- ..+..+.+.+|+|++..+.....++-+.+.+ ...-... +
T Consensus 103 ~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~-------nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vL 175 (350)
T 1b7y_A 103 ITLMERELVEIFRALGYQAVEGPEVESEFF-------NFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLL 175 (350)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHH-------HTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEE
T ss_pred HHHHHHHHHHHHHHCCCEEEECcchhcchh-------HHHhhCCCCCCccccccccEEEcCcccccccccccccccccee
Confidence 356889999999999999999999976311 0011222233444321111100000000000 0000112 2
Q ss_pred ccccchhhHHHHHhccC--CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 227 FLTVSGQLNAETYATAL--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 227 ~L~~Spql~lql~~~g~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
..++||.+. +++..+- -|+|+||+|||+|+. +.+|+|||+|||+++++. |+.+++..++.+++.
T Consensus 176 Rt~tsp~ll-r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~ 243 (350)
T 1b7y_A 176 RTHTSPMQV-RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQA 243 (350)
T ss_dssp CSSSTHHHH-HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred eccchHHHH-HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHh
Confidence 344555553 6666543 379999999999876 578999999999999987 789999988887777
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-14 Score=144.59 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCccccccc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTV 230 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~ 230 (491)
.+++.+.+|++|..+||.||++|.+.+... .| ...+.+.+|++++..+. -|.+....|++
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~-----nf--~~l~~~~~~par~~~d~-------------~~l~e~~vLRt 114 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYY-----NF--EALNLPKSHPARDMQDS-------------FYITDEILMRT 114 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHH-----HT--GGGTCCTTCGGGCTTTS-------------CBSSSSEEECS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehh-----hH--HhhCCCCCccccccCCc-------------EEEcCcceeec
Confidence 467889999999999999999999876311 00 01111112222210000 01123346766
Q ss_pred chhhHH-HHHhcc----CCceEEEccccccCCCCCCcccccccceeeEecc--CCHHHHHHHHHHHHHH
Q 011197 231 SGQLNA-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF--ADLKDDMACATAYLQL 292 (491)
Q Consensus 231 Spql~l-ql~~~g----~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~--~~~~~lm~~~e~li~~ 292 (491)
|.--.+ ++++.+ -.|+||||+|||+|+. +.+|+|||+|||+++++ .|+.+++..++.+++.
T Consensus 115 sl~p~ll~~l~~N~~~~~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~ 182 (294)
T 2rhq_A 115 HTSPVQARTMEKRNGQGPVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKK 182 (294)
T ss_dssp SSHHHHHHHHHHTTTCSCEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHhcCCCCCccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 666665 777776 5689999999999875 46799999999999998 5799999998888777
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.4e-14 Score=142.62 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc-Cccccccc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF-EKPAFLTV 230 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~L~~ 230 (491)
+.+...+|++|...||.|+.+|.+.+..- ..+..+.+.+|++++..+ .|| +....|++
T Consensus 110 ~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~-------nFd~Ln~p~dhpaR~~~d--------------t~~i~e~~vLRT 168 (327)
T 3pco_A 110 TRTIDRIESFFGELGFTVATGPEIEDDYH-------NFDALNIPGHHPARADHD--------------TFWFDTTRLLRT 168 (327)
T ss_dssp HHHHHHHHHHHHTTTCBCCCCCSEECTCC-------CCCTTTCCSSSHHHHHTT--------------CCBSSSSCEECS
T ss_pred HHHHHHHHHHHHHCCCeEEECCCccCCHH-------HHHhhCCCCCChhhcccc--------------cEEeCCCceecc
Confidence 45788999999999999999998866322 124455455555432111 122 22334444
Q ss_pred --chhhHHHHHhccCC--ceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 231 --SGQLNAETYATALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 231 --Spql~lql~~~g~~--rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
||.+ ++.+..+-. |+|++|+|||++ . +.+|+|+|+|+|+..... |+.++...++.+++.
T Consensus 169 htsp~~-lr~l~~~~~pirifeiGrVyR~d-~-d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~ 233 (327)
T 3pco_A 169 QTSGVQ-IRTMKAQQPPIRIIAPGRVYRND-Y-DQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRN 233 (327)
T ss_dssp CTHHHH-HHHHTTCCSSCCBCCEECCBCSC-C-BTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred cCCHHH-HHHHHhCCCCeeEEeeccEEecC-C-CcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 4544 366665543 899999999998 4 689999999999887744 688888888888777
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=3.9e-12 Score=134.04 Aligned_cols=136 Identities=17% Similarity=0.206 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHhhCCcEEeec-ceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCC----------------
Q 011197 148 ARVRNALAYATHKFFQENGFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKT---------------- 210 (491)
Q Consensus 148 ~~~Rs~i~~~iR~ff~~~~F~EV~T-PiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~---------------- 210 (491)
+.-.+++...+|++|...||.||.| |.+..+ .+..+.++.+++|||++..|.....
T Consensus 224 lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~-------~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v 296 (508)
T 3l4g_A 224 LHPLLKVRSQFRQIFLEMGFTEMPTDNFIESS-------FWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRV 296 (508)
T ss_dssp CCHHHHHHHHHHHHHHHTTCEECCCCCSEEEH-------HHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCcCeEeccCCccccH-------HHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhh
Confidence 4445678899999999999999875 777663 1223556777888888643322111
Q ss_pred ---CCCCcCccccccC--------cccccccchhhHH-HHHhc-----cC--CceEEEccccccCCCCCCccccccccee
Q 011197 211 ---KDGLIDWSQDFFE--------KPAFLTVSGQLNA-ETYAT-----AL--SNVYTFGPTFRAENSNTSRHLAEFWMIE 271 (491)
Q Consensus 211 ---~~~~~~~~~~~f~--------~~~~L~~Spql~l-ql~~~-----g~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE 271 (491)
|+.+. .....|+ ...-|+++.--.+ +.+.. +. -|+|+||+|||+|.. +.+|+|+|+|+|
T Consensus 297 ~~~He~g~-~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~-DatHlpeFhQle 374 (508)
T 3l4g_A 297 KRTHSQGG-YGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETL-DATHLAEFHQIE 374 (508)
T ss_dssp HHHHHTCB-TTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCC-CSSSCSEEEEEE
T ss_pred hhhhhccc-cCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCC-CCCcCCeEEEEE
Confidence 11000 0011111 2345655554444 54432 22 379999999999987 689999999999
Q ss_pred eEeccC--CHHHHHHHHHHHHHH
Q 011197 272 PELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 272 ~e~~~~--~~~~lm~~~e~li~~ 292 (491)
+..+.. ++.+++..++.+++.
T Consensus 375 gl~~~~~v~f~dLKg~Le~~l~~ 397 (508)
T 3l4g_A 375 GVVADHGLTLGHLMGVLREFFTK 397 (508)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHT
T ss_pred EEEECCCCCHHHHHHHHHHHHHH
Confidence 987743 577777766665544
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.3e-09 Score=110.07 Aligned_cols=103 Identities=13% Similarity=0.268 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHhhC--------CcEEeec-ceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 152 NALAYATHKFFQEN--------GFIWISS-PIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 152 s~i~~~iR~ff~~~--------~F~EV~T-PiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
+.+...||++|... ||.|+++ |.+.+.. ..| +.++.+++|++++. ...||
T Consensus 51 ~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~-----~NF--d~L~~p~dHpaR~~--------------~Dtfy 109 (415)
T 3cmq_A 51 WLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTW-----QNF--DSLLIPADHPSRKK--------------GDNYY 109 (415)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHH-----HHT--GGGTCCTTCGGGCG--------------GGSCB
T ss_pred HHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHH-----HHH--HHhCCCCCCCcccc--------------cceEE
Confidence 44666777777766 8999998 6666421 122 45666667766521 12343
Q ss_pred -CcccccccchhhHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEecc
Q 011197 223 -EKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (491)
Q Consensus 223 -~~~~~L~~Spql~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (491)
+...-|+++.--++ ++|..+..|+|++|.|||.+.. +..|.|+|.|+|.-..|
T Consensus 110 i~~~~vLRThts~~~~~~l~~~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv~lf 164 (415)
T 3cmq_A 110 LNRTHMLRAHTSAHQWDLLHAGLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAVRLF 164 (415)
T ss_dssp SSSSEEECSSGGGGHHHHHHTTCSEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEE
T ss_pred ecCCeEEcCCCcHHHHHHHHHCCCCEEEeeeEEeccch-hhhhhHHhcCCCcEEEE
Confidence 55556776655555 6777777899999999999987 68999999999987776
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.48 E-value=6.2e-07 Score=94.97 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=37.6
Q ss_pred ceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
|+|++|+|||++...+.+|.+||+|++.-+... |+.|+...+|.++..
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~ 268 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQ 268 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 799999999987541256999999999999875 577777766665555
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.4e-07 Score=97.08 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|+||+|||++...+.+|.+||+|++.-++.. |+.|+...+|.+++.
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3789999999987531457999999999999875 677887777776655
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.3e-07 Score=95.65 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|+||+|||++..-+.+|.+||+|++.-++.. |+.|+...+|.+++.
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3789999999987531457999999999999875 677887777776655
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.43 E-value=6.8e-07 Score=95.51 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|+||+|||++..-+.+|.+||+|++.-++.. |+.|+...+|.+++.
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~ 275 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3789999999987531457999999999999875 677887777776655
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-06 Score=90.89 Aligned_cols=48 Identities=21% Similarity=0.330 Sum_probs=38.0
Q ss_pred ceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
|+|+||+|||.|...+..|.+||+|+++.+.+. |+.+++..++.++..
T Consensus 207 rLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~ 256 (534)
T 2du3_A 207 KLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQ 256 (534)
T ss_dssp EEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGG
T ss_pred eEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 799999999987541457999999999999874 577777777665555
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.41 E-value=8.2e-07 Score=95.23 Aligned_cols=49 Identities=22% Similarity=0.336 Sum_probs=38.9
Q ss_pred CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 244 SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 244 ~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
-|+|+||+|||++..-+.+|.+||+|++.-+... |+.|+...+|.+++.
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~ 275 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQ 275 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 3789999999987531457999999999999875 677887777776655
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=4e-06 Score=86.72 Aligned_cols=116 Identities=13% Similarity=0.145 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-.-.+++..|.+.+|+.|.+.||.||.||+|..... .| ..+.|.+ ...
T Consensus 27 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~-d~~----------------------- 82 (401)
T 1evl_A 27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTT-SSE----------------------- 82 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEE-EET-----------------------
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeE-ecC-----------------------
Confidence 346788899999999999999999999999998641 01 0123321 100
Q ss_pred ccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCc----ccccccceeeEeccCCHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMA 284 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm~ 284 (491)
+..++|+-..+... ++++.. + -|+|+||+|||+|.. +.+ -..||+|.|+|. |.+..+...
T Consensus 83 ------~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~~~~~~~ 154 (401)
T 1evl_A 83 ------NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQIRD 154 (401)
T ss_dssp ------TEEEEECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGHHH
T ss_pred ------CceEEEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCC-cccccccccCcEEecceEE-eCCHHHHHH
Confidence 34456665555444 444322 2 389999999999975 222 237999999995 667666555
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
..++++..
T Consensus 155 e~~e~i~~ 162 (401)
T 1evl_A 155 EVNGCIRL 162 (401)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555544
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.9e-06 Score=87.00 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----C----CCCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC----E----GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----e----g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.-.+++.+|.+.+|+.|.+.||.||.||++.+... + -..+.|.++...
T Consensus 63 lP~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~---------------------- 120 (458)
T 2i4l_A 63 LPLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRH---------------------- 120 (458)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTT----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCC----------------------
Confidence 4557888999999999999999999999999998531 1 122444432110
Q ss_pred CccccccCcccccccch-hhHH---HHHhccC----CceEEEccccccCCCCCCc----ccccccceeeEeccCCHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSG-QLNA---ETYATAL----SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Sp-ql~l---ql~~~g~----~rvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm 283 (491)
++.++|+... +..- +..+... -|+|+|++|||+|-. .+ -..||+|.|+|.-..+..+.-
T Consensus 121 -------~~~~~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~--p~~Gl~R~REF~q~d~~~f~~~~~~ad 191 (458)
T 2i4l_A 121 -------KRELLYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQR--PRFGVMRGREFLMKDAYSFDVDEAGAR 191 (458)
T ss_dssp -------CCEEEECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSS--CBTGGGBCSEEEEEEEEEEESSHHHHH
T ss_pred -------CCeEEECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCC--CCCCcccccceEEeEEEEEECCHHHHH
Confidence 3445565421 3322 2222222 489999999999932 23 347999999999876766655
Q ss_pred HHHHHH
Q 011197 284 ACATAY 289 (491)
Q Consensus 284 ~~~e~l 289 (491)
..+..+
T Consensus 192 ~e~~~~ 197 (458)
T 2i4l_A 192 KSYNKM 197 (458)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-05 Score=80.43 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC----------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+.+..+...+|+.|...||.||.||++..... ....+.|.+...+
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~---------------------- 91 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE---------------------- 91 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCC----------------------
Confidence 45778889999999999999999999999988421 1122444432110
Q ss_pred CccccccCcccccccchhhHH-HHHhcc----CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g----~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+-=.-... ++++.. --|.|+||+|||+|... .-+.-||+|+++|.-..+
T Consensus 92 -------g~~l~LRpd~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g~~ 151 (344)
T 1z7m_A 92 -------GQSITLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGES 151 (344)
T ss_dssp -------CCEEEECCCSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred -------CCEEecCCCCcHHHHHHHHhcCCCCCeEEEEECcEEccCCCC-CCCcceeEEEEEEEEcCC
Confidence 22222222111112 443332 24899999999999774 446789999999998765
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=4.1e-06 Score=87.00 Aligned_cols=103 Identities=17% Similarity=0.228 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C--CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+++..|.+.+|+.|.+.||.||.||+|..... . +. .+.|.++..+
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~---------------------- 71 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKG---------------------- 71 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHH----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCC----------------------
Confidence 45778899999999999999999999999998532 1 11 1334332110
Q ss_pred CccccccCcccccccchhhHH-HHHhc-------cC-CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-------AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~-------g~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.++|+--..... ++++. .+ -|+|+||+|||+|... .-+.-||+|.|+|.-..+
T Consensus 72 -------g~~~~Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~ 135 (420)
T 1qe0_A 72 -------DRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAE 135 (420)
T ss_dssp -------HCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCC
T ss_pred -------CCEEEeCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCc-CCCcccEEEeeEEEECCC
Confidence 23344443322222 33321 22 4899999999999763 345689999999998765
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.05 E-value=6.8e-06 Score=85.58 Aligned_cols=117 Identities=16% Similarity=0.235 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
..-.+++..|.+.+++.+.+.||.||.||+|.....- |...-|. .+.
T Consensus 169 p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~------------------------------~em 218 (425)
T 2dq3_A 169 GWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFE------------------------------EDL 218 (425)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTG------------------------------GGS
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcCh------------------------------hhh
Confidence 4567788999999999999999999999999986421 1111110 011
Q ss_pred c---CcccccccchhhHH-HHHhc------cC-CceEEEccccccCCCCCC--c----ccccccceeeEeccCCHHHHHH
Q 011197 222 F---EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENSNTS--R----HLAEFWMIEPELAFADLKDDMA 284 (491)
Q Consensus 222 f---~~~~~L~~Spql~l-ql~~~------g~-~rvfeI~~~FR~E~~~t~--r----Hl~EFtmlE~e~~~~~~~~lm~ 284 (491)
| +..+||+--.+... .+... .+ -|+|++|+|||+|.+... + -..||+|.|.+. |.+-++..+
T Consensus 219 y~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~-f~~pe~s~~ 297 (425)
T 2dq3_A 219 YKCERDNLYLIPTAEVPLTNLYREEILKEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVK-IVHPDTSYD 297 (425)
T ss_dssp CBCTTTCCEECSSTHHHHHGGGTTEEEETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEE-EECGGGHHH
T ss_pred eEecCCeEEEcCCCcHHHHHHHHhhccccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEE-ECCHHHHHH
Confidence 1 34456655444433 23221 12 389999999999975211 1 235999999976 555556666
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
..++++..
T Consensus 298 ~~~e~i~~ 305 (425)
T 2dq3_A 298 ELEKLVKD 305 (425)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=98.02 E-value=2.9e-05 Score=82.06 Aligned_cols=121 Identities=16% Similarity=0.106 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---C------CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-.-.+++..|.+.+|+.|.+.||.||.||++.+..-- + +.+.|.+++.+.
T Consensus 41 P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~--------------------- 99 (477)
T 1hc7_A 41 PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG--------------------- 99 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESS---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCC---------------------
Confidence 3467788999999999999999999999999986531 1 123444432210
Q ss_pred CccccccCcccccccchhh-----HHHHHhc--cC-CceEEEccccccCCC-CCCcccccccceeeEeccCCHHHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQL-----NAETYAT--AL-SNVYTFGPTFRAENS-NTSRHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql-----~lql~~~--g~-~rvfeI~~~FR~E~~-~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
+-.+.+++|+--.+- |.+.+.+ .+ -|+||||+|||+|.. ++---.-||+|.|++..+.+..+....+
T Consensus 100 ----~~l~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~~~~ad~E~ 175 (477)
T 1hc7_A 100 ----EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEEV 175 (477)
T ss_dssp ----SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHHH
T ss_pred ----ccCCCeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCCHHHHHHHH
Confidence 001244556544442 2322222 22 389999999999943 2200235999999999999887776666
Q ss_pred HHHH
Q 011197 287 TAYL 290 (491)
Q Consensus 287 e~li 290 (491)
..++
T Consensus 176 ~~~l 179 (477)
T 1hc7_A 176 RRML 179 (477)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.5e-05 Score=87.47 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.-.+++..|.+.+|+.|.+.||.||.||+|....- .| .-+.|.++...
T Consensus 267 lP~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~---------------------- 324 (645)
T 1nyr_A 267 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLD---------------------- 324 (645)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEET----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecC----------------------
Confidence 4567889999999999999999999999999998531 01 11222221100
Q ss_pred CccccccC-cccccccchhhHH-HHHhccC-------CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHH
Q 011197 216 DWSQDFFE-KPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 216 ~~~~~~f~-~~~~L~~Spql~l-ql~~~g~-------~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~l 282 (491)
+ +.++|+--..-.. ++.+... -|+|+||+|||+|.+ ..+| .-||||.|+|. |.+.+++
T Consensus 325 -------~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlrl~~~g~~fR~E~~-~~~~GL~R~ReF~Q~d~~~-f~~~~~~ 395 (645)
T 1nyr_A 325 -------ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS-GAVSGLQRVRGMTLNDSHI-FVRPDQI 395 (645)
T ss_dssp -------TTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT-TTCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred -------CCeEEEeCCCCCHHHHHHHHhhhhhccCCCeEEEEeccEEecCCC-ccccCcceeeeEEEccEEE-EcCHHHH
Confidence 2 4445554443333 4444331 389999999999987 3333 37999999998 6676666
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
.+...+++..
T Consensus 396 ~d~~~e~i~~ 405 (645)
T 1nyr_A 396 KEEFKRVVNM 405 (645)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6555555544
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=3.8e-05 Score=80.17 Aligned_cols=103 Identities=14% Similarity=0.158 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC--C--C---CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC--E--G---AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e--g---~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
.-.+++.+|.+.+|+.|...||.||.||++..... . | ..+.|.++..+
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~------------------------- 72 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG------------------------- 72 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCC-------------------------
Confidence 45778899999999999999999999999998532 1 1 12445443211
Q ss_pred ccccCcccccccchhhHH-HHHhcc----C-CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 219 QDFFEKPAFLTVSGQLNA-ETYATA----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l-ql~~~g----~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+--.-... ++.+.. + -|.|+||++||+|..... +.-||+|.++|.-..+
T Consensus 73 ----g~~l~LrPd~t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~~g-R~REF~Q~d~ei~g~~ 133 (434)
T 1wu7_A 73 ----GREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAG-RYREHYQFNADIFGSD 133 (434)
T ss_dssp ----SCEEEECSCSHHHHHHHHTTCTTCCSSEEEEECCEEECCCCSCSS-CCSEEEEEEEEEESCC
T ss_pred ----CCEEEeCCCChHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCCCC-CccceEEeeEEEEcCC
Confidence 22222322112222 433322 1 389999999999976434 5689999999998765
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=3.5e-05 Score=83.36 Aligned_cols=117 Identities=17% Similarity=0.163 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---C-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.-.+++..|.+.+|+.|.+.||.||.||++.....- | ..+.|.++...
T Consensus 43 lP~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~---------------------- 100 (572)
T 2j3l_A 43 LPLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRN---------------------- 100 (572)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTT----------------------
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCC----------------------
Confidence 44568889999999999999999999999999986310 1 11344332110
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCcc----cccccceeeEeccCCHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm 283 (491)
++.++|+--.+-.. +++... + -|+|+||+|||+|.. . +| .-||+|.|+|.-..+-.+..
T Consensus 101 -------~~~~~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~~~~~~ 171 (572)
T 2j3l_A 101 -------DRDYILGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHADEASLD 171 (572)
T ss_dssp -------CCEEEECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESSHHHHH
T ss_pred -------CCeEEEccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCCHHHHH
Confidence 34445544333322 332221 2 389999999999976 3 33 36999999999877666666
Q ss_pred HHHHHHHH
Q 011197 284 ACATAYLQ 291 (491)
Q Consensus 284 ~~~e~li~ 291 (491)
..++.++.
T Consensus 172 ~e~~~~~~ 179 (572)
T 2j3l_A 172 QSYRDYEK 179 (572)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 65555443
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.5e-05 Score=82.23 Aligned_cols=121 Identities=18% Similarity=0.096 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhCCcEEeecceeeccCC---CCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 144 FGAVARVRNALAYATHKFF-QENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff-~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.-.-.+++..|.+.+|+.+ .+.||.||.||+|..... .|.. +.|.++..+
T Consensus 60 lP~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~--------------------- 118 (460)
T 3uh0_A 60 LPNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTD--------------------- 118 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC-----------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCC---------------------
Confidence 3456888999999999999 999999999999987532 0111 233321100
Q ss_pred cCccccccCcccccccchhhHH-HHHhccC-------CceEEEccccccCCCC---CCcccccccceeeEeccCCHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDM 283 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g~-------~rvfeI~~~FR~E~~~---t~rHl~EFtmlE~e~~~~~~~~lm 283 (491)
--+.+++|+--.+... .+..... -|+|++|+|||+|... +-.-.-||+|.|.+. |.+-++..
T Consensus 119 ------~~~~~l~LrPt~~~~~~~~~~~~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~~e~~~ 191 (460)
T 3uh0_A 119 ------EEKEEYGLKPMNCPGHCLIFGKKDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCTPSQVK 191 (460)
T ss_dssp ----------CEEECSCSHHHHHHHHTTSCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EECGGGHH
T ss_pred ------CCCceEEEcccCcHHHHHHHHhccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcCHHHHH
Confidence 0034455654444444 4443322 2799999999999762 211235999999996 67666666
Q ss_pred HHHHHHHHH
Q 011197 284 ACATAYLQL 292 (491)
Q Consensus 284 ~~~e~li~~ 292 (491)
+.+++++..
T Consensus 192 ~e~~~~i~~ 200 (460)
T 3uh0_A 192 SEIFNSLKL 200 (460)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666655
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.85 E-value=4.8e-05 Score=78.59 Aligned_cols=101 Identities=13% Similarity=0.102 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
.-.+++..+...+|+.|...||.||.||++..... ....+.|.+...+
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~-------------------------- 75 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQ-------------------------- 75 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCC--------------------------
Confidence 45678899999999999999999999999976532 1112344432111
Q ss_pred cccCcccccccchhhH--H-HHHhcc-----C-CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 220 DFFEKPAFLTVSGQLN--A-ETYATA-----L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 220 ~~f~~~~~L~~Spql~--l-ql~~~g-----~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+-|+ |++= . ++++.. . -|.|+||+|||+|... .-+.-||+|+++|.-..+
T Consensus 76 ---g~~l~LR--pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~ 137 (400)
T 3od1_A 76 ---GNTLVLR--PDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDG 137 (400)
T ss_dssp ---SCEEEEC--SCSHHHHHHHHHHHCSSSCSCEEEEEEEEEECCCC----CCCSEEEEEEEEEESCC
T ss_pred ---CCEEEEC--CCCHHHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCC
Confidence 2222222 2221 1 333332 2 3899999999999764 346689999999997664
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=97.82 E-value=5.2e-05 Score=78.68 Aligned_cols=103 Identities=19% Similarity=0.333 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-CC------CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+++.+|.+.+|+.|.+.||.||.||++..... . |. .+.|.++..+
T Consensus 15 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~---------------------- 72 (421)
T 1h4v_B 15 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRG---------------------- 72 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCC----------------------
Confidence 35678899999999999999999999999998542 1 11 1345442211
Q ss_pred CccccccCcccccccchhhHH-HHHh-ccC------CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYA-TAL------SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~-~g~------~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+--.-... ++.+ ... -|.|+|+++||+|..... +.-||+|.++|.-..+
T Consensus 73 -------g~~l~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~g-R~REf~Q~g~e~~g~~ 135 (421)
T 1h4v_B 73 -------GRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKG-RYRQFHQVNYEALGSE 135 (421)
T ss_pred -------CCEEeeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCC-CcccEEEccEEEECCC
Confidence 22222222111111 3332 222 489999999999976433 5589999999997765
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.81 E-value=4.7e-05 Score=80.26 Aligned_cols=130 Identities=15% Similarity=0.202 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC-----CCCCCC-ceeeeecCCC--cccccCCCCCCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD-----CEGAGE-QFCVTTLIPS--SREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~-----~eg~~~-~F~vt~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
.-.+.+..+...+|+.|...||.||.||++.... ++...+ .|.+....+. ..+.+ .
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~------------~---- 87 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKD------------K---- 87 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccc------------c----
Confidence 4567789999999999999999999999994321 233345 6766443100 00000 0
Q ss_pred cccccCcccccccchhhHH-HHHhc-----cC-CceEEEccccccCCCCCCcccccccceeeEeccCC--HH----HHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYAT-----AL-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD--LK----DDMA 284 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~-----g~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~--~~----~lm~ 284 (491)
+.+.=+..+.|+-=.-... ++++. .. -|.|+||+|||.|... .-+.-||+|+++|.-..+ .. +++.
T Consensus 88 ~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~ 166 (465)
T 3net_A 88 SGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPA 166 (465)
T ss_dssp ------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHH
T ss_pred ccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHH
Confidence 0000022222322111111 33222 12 3899999999999764 445689999999998653 22 4555
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
++-++++.
T Consensus 167 l~~~~l~~ 174 (465)
T 3net_A 167 IITEIFEA 174 (465)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555444
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=5.9e-05 Score=78.37 Aligned_cols=103 Identities=15% Similarity=0.215 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-CC------CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+++.+|.+.+|+.|...||.||.||++..... . |. .+.|.++..+
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~---------------------- 73 (423)
T 1htt_A 16 GETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRN---------------------- 73 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCC----------------------
Confidence 35778899999999999999999999999998532 1 11 1456553221
Q ss_pred CccccccCcccccccchhhHH-HHHh-cc-----CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYA-TA-----LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~-~g-----~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+-=.-... ++.+ .. --|.|+|+++||+|..... +.-||+|.++|.-..+
T Consensus 74 -------g~~l~Lrpd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~g-R~Ref~Q~d~e~~g~~ 135 (423)
T 1htt_A 74 -------GDSLTLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKG-RYRQFHQLGCEVFGLQ 135 (423)
T ss_dssp -------SCEEEECSCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSS-CCSEEEEEEEEEESCC
T ss_pred -------CCEEEeCCCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCC-ccceeEEeeEEEECCC
Confidence 22222222111112 3333 22 2489999999999976433 5689999999998765
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.80 E-value=5.3e-05 Score=79.92 Aligned_cols=104 Identities=14% Similarity=0.216 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-CC------CCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-GA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+++..|...+|+.|.+.||.||.||++..... . |. .+.|.+...+.
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~--------------------- 102 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALN--------------------- 102 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTT---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCC---------------------
Confidence 45778899999999999999999999999987542 0 11 13454321100
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+--.-... ++++.. --|.|++|+|||+|.... -+.-||+|+++|.-..+
T Consensus 103 -------g~~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~-gR~ReF~Q~d~ei~g~~ 164 (467)
T 4e51_A 103 -------GENLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQR-GRYRQFHQVGVEALGFA 164 (467)
T ss_dssp -------CCEEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCC
T ss_pred -------CCEEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCC-CCcCceEEEEEEEEeCC
Confidence 12233332222222 433321 248999999999998743 45689999999987554
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=97.79 E-value=8.1e-05 Score=78.23 Aligned_cols=101 Identities=14% Similarity=0.128 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC--C-C----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE--G-A----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e--g-~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
.-.+++..+...+|+.|...||.||.||++.....- + + .+.|.+...+
T Consensus 41 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~------------------------- 95 (456)
T 3lc0_A 41 EAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKG------------------------- 95 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSS-------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCC-------------------------
Confidence 346788999999999999999999999999886431 1 1 1345442211
Q ss_pred ccccCcccccccchhhH--H-HHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 219 QDFFEKPAFLTVSGQLN--A-ETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~--l-ql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+-| -|++= . ++++.. --|.|+||+|||+|... .-+.-||+|+++|.-..+
T Consensus 96 ----g~~l~L--Rpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~ 157 (456)
T 3lc0_A 96 ----GHRVAL--RPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVK 157 (456)
T ss_dssp ----SCEEEE--CSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC------CCEEEEEEEEEESCC
T ss_pred ----CCEEec--CCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCC
Confidence 222222 22221 1 433332 24799999999999874 345689999999997664
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=9.7e-05 Score=77.71 Aligned_cols=123 Identities=15% Similarity=0.118 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----CC-----CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EG-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----eg-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-.-.+++..|.+.+|+.|.+.||.||.||++.+... .| ..+.|.++....
T Consensus 35 P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~--------------------- 93 (459)
T 1nj8_A 35 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK--------------------- 93 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS---------------------
T ss_pred ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCc---------------------
Confidence 346778899999999999999999999999998441 11 124454432210
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC-CC-ccccccc-ceeeEeccCCHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN-TS-RHLAEFW-MIEPELAFADLKDDMA 284 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~-t~-rHl~EFt-mlE~e~~~~~~~~lm~ 284 (491)
.--+.+++|+--.+-.. ++.+.. + -|+||||+|||+|... .. .-.-||+ |.|.+..+.+..+...
T Consensus 94 ----~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~~~~a~~ 169 (459)
T 1nj8_A 94 ----TQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHSTKEEAEN 169 (459)
T ss_dssp ----SEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESSHHHHHH
T ss_pred ----ccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECCHHHHHH
Confidence 00034455655554444 444322 2 3899999999999751 11 0225999 9999999998888777
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
..++++..
T Consensus 170 e~~~~i~~ 177 (459)
T 1nj8_A 170 QVKEAISI 177 (459)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=7.5e-05 Score=79.38 Aligned_cols=122 Identities=15% Similarity=0.114 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CC--------CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EG--------AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg--------~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-.-.+++..|.+.+|+.|.+ ||.||.||+|.+... .+ .-+.|.++..+.
T Consensus 68 P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~--------------------- 125 (501)
T 1nj1_A 68 PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL--------------------- 125 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCC---------------------
Confidence 34677888999999999999 999999999998542 11 124555432210
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCc--cccccc-ceeeEeccCCHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR--HLAEFW-MIEPELAFADLKDDMA 284 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~r--Hl~EFt-mlE~e~~~~~~~~lm~ 284 (491)
+--+.+++|+--.+... .+.+.- + -|+|+||+|||+|..++.= =.-||+ |.|.+..+.+.++..+
T Consensus 126 ----~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~~e~a~~ 201 (501)
T 1nj1_A 126 ----SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHATASEAEE 201 (501)
T ss_dssp ----EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESSHHHHHH
T ss_pred ----cccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECCHHHHHH
Confidence 00023455665555444 443321 2 2799999999999752110 124999 9999999999888877
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
.+++++..
T Consensus 202 e~~~~l~~ 209 (501)
T 1nj1_A 202 QVERAVEI 209 (501)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776654
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=5.7e-05 Score=79.34 Aligned_cols=117 Identities=14% Similarity=0.179 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC-------CceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~-------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
....+++.++++.+++.+.++||.||.||.|..... ++.+ +.|.++..
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~------------------------ 260 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD------------------------ 260 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC------------------------
Confidence 557899999999999999999999999999998653 1111 33433110
Q ss_pred ccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCC-CC-----CcccccccceeeEeccCCHHH-
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS-NT-----SRHLAEFWMIEPELAFADLKD- 281 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~-~t-----~rHl~EFtmlE~e~~~~~~~~- 281 (491)
+.++||.-..+..+ .+...- + =|+|++++|||+|-. .+ ---.-||+|.|.+. |..-++
T Consensus 261 ------~~~~~L~PTaE~~l~~l~~~~i~sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~pe~~ 333 (484)
T 3lss_A 261 ------GDKKYLIATSEMPIAAYHRGRWFTELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCSPRQE 333 (484)
T ss_dssp ------SSCEEECSSTHHHHHHHTTTCEESCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EECSSTT
T ss_pred ------CcceEEeccCcHHHHHHHhccccchhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeCcchH
Confidence 24456766666665 332221 1 269999999999962 11 01223999999975 555555
Q ss_pred -HHHHHHHHHHH
Q 011197 282 -DMACATAYLQL 292 (491)
Q Consensus 282 -lm~~~e~li~~ 292 (491)
..+..++++..
T Consensus 334 ~s~~e~e~~~~~ 345 (484)
T 3lss_A 334 ESWRHLEDMITT 345 (484)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 77777777665
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.69 E-value=5.3e-05 Score=79.51 Aligned_cols=117 Identities=14% Similarity=0.181 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-C--CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-E--GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-e--g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
....+++..+++.+++.+.+.||.||.||.|..... + |. .+.|.++..
T Consensus 182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~------------------------ 237 (485)
T 3qne_A 182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG------------------------ 237 (485)
T ss_dssp THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET------------------------
T ss_pred cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC------------------------
Confidence 457888999999999999999999999999998653 1 11 134443210
Q ss_pred ccccccCcccccccchhhHH-HHHhcc-C--------CceEEEccccccCCCC------CCcccccccceeeEeccCCHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA-L--------SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLK 280 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g-~--------~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~ 280 (491)
+.+.||.-..+..+ -++..- + =|+|++++|||+|-.. +---.-||+|.|.+. |..-+
T Consensus 238 ------~~~~~LipTaE~pl~~l~~~ei~~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~pe 310 (485)
T 3qne_A 238 ------EDEKYLIATSEQPISAYHAGEWFESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTEPE 310 (485)
T ss_dssp ------TEEEEECSSTHHHHHHHTTTCEESSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EECGG
T ss_pred ------CCeEEEeccccHHHHHHHhccccccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeCHH
Confidence 23456665556555 232221 1 2599999999999631 111224999999987 67777
Q ss_pred HHHHHHHHHHHH
Q 011197 281 DDMACATAYLQL 292 (491)
Q Consensus 281 ~lm~~~e~li~~ 292 (491)
+..+..++++..
T Consensus 311 ~s~~e~e~ml~~ 322 (485)
T 3qne_A 311 KSWEEFDRMIGC 322 (485)
T ss_dssp GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777765
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.67 E-value=8.5e-05 Score=81.34 Aligned_cols=118 Identities=14% Similarity=0.127 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 143 TFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 143 ~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
..-.-.+++..|.+.+|+.+.+.||.||.||+|.....- |. -+.|. +...
T Consensus 266 ~lP~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~-~d~~--------------------- 323 (642)
T 1qf6_A 266 WHNDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSE--------------------- 323 (642)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEE-EEET---------------------
T ss_pred ECCcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCcccccccccee-eecC---------------------
Confidence 345678899999999999999999999999999986420 11 12332 1110
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCc----ccccccceeeEeccCCHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDD 282 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~l 282 (491)
++.++|+--..-.. ++.... + =|+|+||+|||+|.+ +.+ -.-||||.|++. |.+.+++
T Consensus 324 --------~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~~~~~ 393 (642)
T 1qf6_A 324 --------NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCTEEQI 393 (642)
T ss_dssp --------TEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EECGGGH
T ss_pred --------CceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcCHHHH
Confidence 23344544333333 443322 2 289999999999976 222 236999999998 6676665
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
....++++..
T Consensus 394 ~~e~~~~i~~ 403 (642)
T 1qf6_A 394 RDEVNGCIRL 403 (642)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555544
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=75.11 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-----C-CC-CCceeeeecCCCcccccCCCCCCCCCCCCCCcCccc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC-----E-GA-GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQ 219 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-----e-g~-~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (491)
-.+++..+...+|+.|...||.||.||++..... + .. .+.|.+...+
T Consensus 36 ~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~-------------------------- 89 (373)
T 3rac_A 36 FAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGG-------------------------- 89 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCS--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCC--------------------------
Confidence 4677889999999999999999999999987432 1 11 2333321110
Q ss_pred cccCccccccc--chhhHHHHHhc------cCCceEEEccccccCCC------CCCcccccccceeeEeccCC
Q 011197 220 DFFEKPAFLTV--SGQLNAETYAT------ALSNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 220 ~~f~~~~~L~~--Spql~lql~~~------g~~rvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+-|+- .|++. ++++. .--|.|+||+|||+|.. . .-+.-||+|+++|.-..+
T Consensus 90 ---g~~l~LRpd~T~~~a-R~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~-~gR~ReF~Q~g~ei~g~~ 157 (373)
T 3rac_A 90 ---GDAVALRPEMTPSIA-RMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWA-SGKAAESTQVGIERIGEE 157 (373)
T ss_dssp ---SSCEEECSSSHHHHH-HHHHHHHHTTCCCCEEEEEEEEEECC-------------CEEEEEEEEEECSSC
T ss_pred ---CCEEEECCcCHHHHH-HHHHhccccCCCCeEEEEEcceEccCCCccccccc-CCccceeEEeeeEEECCC
Confidence 22222221 11221 32222 23689999999999966 2 235689999999997654
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0001 Score=76.49 Aligned_cols=117 Identities=18% Similarity=0.228 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCcccccc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFF 222 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 222 (491)
.-.+++..|.+.+++.+.+.||.||.||+|.....- |..+-|. .+.|
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~------------------------------~emy 213 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYR------------------------------DQVW 213 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTG------------------------------GGSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCc------------------------------hhcE
Confidence 467888999999999999999999999999985421 1111110 0111
Q ss_pred ---CcccccccchhhHH-HHHhc------cC-CceEEEccccccCCC------CCCcccccccceeeEeccCC-HHHHHH
Q 011197 223 ---EKPAFLTVSGQLNA-ETYAT------AL-SNVYTFGPTFRAENS------NTSRHLAEFWMIEPELAFAD-LKDDMA 284 (491)
Q Consensus 223 ---~~~~~L~~Spql~l-ql~~~------g~-~rvfeI~~~FR~E~~------~t~rHl~EFtmlE~e~~~~~-~~~lm~ 284 (491)
+..++|.-..+... .++.. .+ -|+|++|+|||+|-+ ++---.-||+|.|++..... .++..+
T Consensus 214 ~~~d~~l~L~Pt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~ 293 (421)
T 1ses_A 214 AIAETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDR 293 (421)
T ss_dssp BBTTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHH
T ss_pred EEcCCeEEEeecCcHHHHHHhcccccCchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHH
Confidence 23455665555444 23221 12 389999999999952 12002259999999876544 477777
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
..++++..
T Consensus 294 ~~~e~~~~ 301 (421)
T 1ses_A 294 AFQELLEN 301 (421)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776655
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00011 Score=77.18 Aligned_cols=120 Identities=16% Similarity=0.159 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
..-.+++..|.+.+++.+.+.||.||.||+|..... .|..+-|.- .+...
T Consensus 190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~----------------emy~~----------- 242 (455)
T 2dq0_A 190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFED----------------VIYKV----------- 242 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHH----------------TCCBB-----------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChH----------------hhCee-----------
Confidence 456778899999999999999999999999998543 122122210 00000
Q ss_pred cCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCC------cccccccceeeEeccCCHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS------RHLAEFWMIEPELAFADLKDDMACAT 287 (491)
Q Consensus 222 f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~------rHl~EFtmlE~e~~~~~~~~lm~~~e 287 (491)
-+.++||.-..+... .+.... + =|+|++|+|||+|..... .-.-||+|.|.+ .|.+-++..+..+
T Consensus 243 ~d~~l~LrPt~e~~~~~~~~~~~~s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~pe~s~~~~~ 321 (455)
T 2dq0_A 243 EDEDLYLIPTAEHPLAGMHANEILDGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSRPEESWEWHE 321 (455)
T ss_dssp TTSSCEECSSTHHHHHHTTTTEEEETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEECTTTHHHHHH
T ss_pred cCCcEEEcCcCcHHHHHHHHhCccCchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecCHHHHHHHHH
Confidence 023456666555554 333221 2 379999999999975111 022499999998 5676677777777
Q ss_pred HHHHH
Q 011197 288 AYLQL 292 (491)
Q Consensus 288 ~li~~ 292 (491)
+++..
T Consensus 322 e~l~~ 326 (455)
T 2dq0_A 322 KIIRN 326 (455)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00032 Score=73.61 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC------CCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
+-.-.+++..|.+.+|+.|...||.||.||++.... ++...+.|.+...+
T Consensus 24 lP~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~------------------------ 79 (464)
T 4g84_A 24 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG------------------------ 79 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCS------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCC------------------------
Confidence 345678889999999999999999999999997642 11112333321110
Q ss_pred cccccCcccccccchhhH---HHHHhcc---CCceEEEccccccCCCCC-CcccccccceeeEeccC
Q 011197 218 SQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA 277 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~---lql~~~g---~~rvfeI~~~FR~E~~~t-~rHl~EFtmlE~e~~~~ 277 (491)
++.+.|+ |++= .++++.. --|.|+||++||.|.... .-+.-||+|+++|.-..
T Consensus 80 -----g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~ 139 (464)
T 4g84_A 80 -----GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 139 (464)
T ss_dssp -----SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC------CCSEEEEEEEEEESC
T ss_pred -----CCEEEeC--CcCcHHHHHHHHhcCCCCceeEEEecceeccCCccccCccceeeecceeccCC
Confidence 2322232 3321 1333322 137899999999996421 22557999999998753
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00043 Score=73.21 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCCC------CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGAG------EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~~------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.....++..+|++.+++.+.+.||.||.||.|..... .|.. +.|.++. +
T Consensus 215 ~p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~---------------------~- 272 (501)
T 1wle_A 215 RGAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDP---------------------S- 272 (501)
T ss_dssp ETHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCT---------------------T-
T ss_pred cChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEec---------------------C-
Confidence 4557888899999999999999999999999998543 1111 2332210 0
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCC-----CCCcccccccceeeEeccCCH-H
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS-----NTSRHLAEFWMIEPELAFADL-K 280 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~-----~t~rHl~EFtmlE~e~~~~~~-~ 280 (491)
. +.++||.-..+..+ .+...- + =|+|++++|||+|-. .+--=.-||+|.|.+.--.+. +
T Consensus 273 -----~--~~~l~L~PTaE~~~~~l~~~~i~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e 345 (501)
T 1wle_A 273 -----R--FEDLNLAGTAEVGLAGYFMDHSVAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLE 345 (501)
T ss_dssp -----T--SSSCEECSSHHHHHHHHHTTEEEEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHH
T ss_pred -----C--CCeEEECCcCcHHHHHHHhhccCCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHH
Confidence 0 23456766666655 333322 1 279999999999954 111112499999998865554 7
Q ss_pred HHHHHHHHHHHH
Q 011197 281 DDMACATAYLQL 292 (491)
Q Consensus 281 ~lm~~~e~li~~ 292 (491)
+..+..++++..
T Consensus 346 ~s~~~~e~~l~~ 357 (501)
T 1wle_A 346 QSSELLEEFLSL 357 (501)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887766
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00018 Score=76.52 Aligned_cols=124 Identities=16% Similarity=0.126 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---C-C-----CCCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC---E-G-----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---e-g-----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
.-.-.+++..|.+.+|+.|.+.||.||.||+|.+... + | .-+.|.++....
T Consensus 51 lP~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~-------------------- 110 (518)
T 3ial_A 51 RPYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGL-------------------- 110 (518)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETT--------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCC--------------------
Confidence 4557788899999999999999999999999987542 1 1 124555543210
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCC--CCCcccccccceeeEeccCCHHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMA 284 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~ 284 (491)
.=-+.+++|+--.+-.. .+.... + =|+||+++|||+|-. .+-.-.-||+|.|.+....+.++..+
T Consensus 111 -----~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~~e~a~~ 185 (518)
T 3ial_A 111 -----QPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHATAEDAVS 185 (518)
T ss_dssp -----EEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESSHHHHHH
T ss_pred -----cccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECCHHHHHH
Confidence 00024456655444433 333222 2 279999999999943 11012359999999998789988888
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
.++.++..
T Consensus 186 e~~~~l~~ 193 (518)
T 3ial_A 186 QLSDYWKV 193 (518)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887755
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00025 Score=75.46 Aligned_cols=123 Identities=16% Similarity=0.111 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----CCCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EGAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----eg~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
-.-.+++..|.+.+|+.+.+.||.||.||+|.+... .|.. +.|.++....
T Consensus 58 P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~--------------------- 116 (519)
T 4hvc_A 58 PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGK--------------------- 116 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETT---------------------
T ss_pred ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCC---------------------
Confidence 346778899999999999999999999999987542 1221 2333332110
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCC-C-cccccccceeeEeccCCHHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNT-S-RHLAEFWMIEPELAFADLKDDMAC 285 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t-~-rHl~EFtmlE~e~~~~~~~~lm~~ 285 (491)
.+ .+.+++|+--.+-.. .+.... + =|+|++|+|||+|-..+ . .=.-||+|.|.+..|.+.++..+.
T Consensus 117 ---~~-l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~~e~a~~E 192 (519)
T 4hvc_A 117 ---TE-LAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFATMEEAAEE 192 (519)
T ss_dssp ---EE-EEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESSHHHHHHH
T ss_pred ---cc-cccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecCHHHHHHH
Confidence 00 012345544443333 333222 2 37999999999994311 1 012499999999999998888888
Q ss_pred HHHHHHH
Q 011197 286 ATAYLQL 292 (491)
Q Consensus 286 ~e~li~~ 292 (491)
++.++..
T Consensus 193 ~~~~l~~ 199 (519)
T 4hvc_A 193 VLQILDL 199 (519)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877655
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0005 Score=73.35 Aligned_cols=103 Identities=17% Similarity=0.169 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC------CCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASD------CEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~------~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
+-.-.++|..|.+.+|+.|...||.||.||++.... ++..-..|.+...+
T Consensus 77 lP~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~------------------------ 132 (517)
T 4g85_A 77 SPRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQG------------------------ 132 (517)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTT------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCC------------------------
Confidence 455678899999999999999999999999997642 11111233221110
Q ss_pred cccccCcccccccchhhH---HHHHhcc---CCceEEEccccccCCCCC-CcccccccceeeEeccC
Q 011197 218 SQDFFEKPAFLTVSGQLN---AETYATA---LSNVYTFGPTFRAENSNT-SRHLAEFWMIEPELAFA 277 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~---lql~~~g---~~rvfeI~~~FR~E~~~t-~rHl~EFtmlE~e~~~~ 277 (491)
++.+.|+ |++= .++++.. --|.|+||++||.|.... .=+.-||+|+++|.-..
T Consensus 133 -----g~~l~LR--Pd~T~~~aR~~~~~~~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~ 192 (517)
T 4g85_A 133 -----GELLSLR--YDLTVPFARYLAMNKLTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGN 192 (517)
T ss_dssp -----SCCEEEC--SCSHHHHHHHHHHTTCSCEEEEEEEEEECCCC-------CCEEEEEEEEEESC
T ss_pred -----CCEEEeC--CcCcHHHHHHHHhCCCCCceeEEEeceEeccCcccccCccceeeeeceeccCC
Confidence 2222232 2321 1433332 137899999999996421 12457999999998753
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00025 Score=74.86 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
-.+++..|.+.+|+.|.+.||.||.||++..... .|. .+.|.++..
T Consensus 48 g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~-------------------------- 101 (471)
T 3a32_A 48 GGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIE-------------------------- 101 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEET--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecC--------------------------
Confidence 5778899999999999999999999999998542 121 133433110
Q ss_pred ccccCcccccccchhhHH-HHH-----hc----cC-CceEEEccccccCCCC--CC-cccccccceeeEeccCCHHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNA-ETY-----AT----AL-SNVYTFGPTFRAENSN--TS-RHLAEFWMIEPELAFADLKDDMA 284 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~l-ql~-----~~----g~-~rvfeI~~~FR~E~~~--t~-rHl~EFtmlE~e~~~~~~~~lm~ 284 (491)
+.+++|+--.+... ++. .. .+ -|+|+||+|||+|... .. .-.-||+|.|+|.- .+.++..+
T Consensus 102 ----~~~l~LRP~~t~~i~~~~~~~~~s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f-~~~~~~~d 176 (471)
T 3a32_A 102 ----GHEFAVKPMNCPYHILLFLNEVAKHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHII-VPGGRVID 176 (471)
T ss_dssp ----TEEEEECSCSHHHHHHHHHHHHHHHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEE-EEGGGHHH
T ss_pred ----CcEEEEccccHHHHHHHHHhhhhhccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEE-cChHHHHH
Confidence 23444443333222 221 11 23 4899999999999652 11 02359999999986 44444444
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
.+.+++..
T Consensus 177 e~~e~i~~ 184 (471)
T 3a32_A 177 VVYDVFEE 184 (471)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44455443
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0005 Score=73.36 Aligned_cols=116 Identities=17% Similarity=0.246 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CCC-----CceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GAG-----EQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~~-----~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.....+++..+++.+++.+.+.||.||.||.|...... |.- +.|.++
T Consensus 271 ~p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~------------------------- 325 (536)
T 3err_A 271 KGDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA------------------------- 325 (536)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET-------------------------
T ss_pred cCHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec-------------------------
Confidence 34578899999999999999999999999999985431 111 222220
Q ss_pred CccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC------CCcccccccceeeEeccCCH--
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADL-- 279 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~-- 279 (491)
+.++||.-..+..+ .+.... + =|+|++++|||+|-+. +-.-.-||+|.|.+. |..-
T Consensus 326 -------~~~~~L~PT~E~~~~~l~~~~i~s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~-f~~pe~ 397 (536)
T 3err_A 326 -------ETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYV-LTEASL 397 (536)
T ss_dssp -------TTTEEECSSTHHHHHHHTTTCEEEGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEE-EECSCH
T ss_pred -------CCCEEEccCCcHHHHHHHhcccccHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEE-EECCch
Confidence 23456666665554 332221 1 2799999999999631 112345999999985 5543
Q ss_pred HHHHHHHHHHHHH
Q 011197 280 KDDMACATAYLQL 292 (491)
Q Consensus 280 ~~lm~~~e~li~~ 292 (491)
++..+..++++..
T Consensus 398 e~s~~~~e~~~~~ 410 (536)
T 3err_A 398 EASDRAFQELLEN 410 (536)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4888888877766
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00077 Score=71.63 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHh--hCCcEEeecceeeccC
Q 011197 146 AVARVRNALAYATHKFFQ--ENGFIWISSPIITASD 179 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~--~~~F~EV~TPiL~~~~ 179 (491)
.-.+++..|.+.+|+.|. +.||.||.||+|.+..
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 467888999999999999 8999999999999975
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00049 Score=72.80 Aligned_cols=126 Identities=14% Similarity=0.153 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
....+++..+++.+++.+.+.||.||.||.|..... .|. -+.|.++..... + .
T Consensus 198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~----------~-----~---- 258 (522)
T 3vbb_A 198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSE----------K-----S---- 258 (522)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCcc----------c-----c----
Confidence 357888999999999999999999999999987543 111 134444211000 0 0
Q ss_pred ccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCC------CCcccccccceeeEeccCCHH--
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLK-- 280 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~-- 280 (491)
.+--+.++||.-..+..+ .+...- + =|+|++++|||+|-+- +---.-||+|.|.+. |..-+
T Consensus 259 --~~~~~~~l~L~PTaE~~l~~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~-f~~pe~e 335 (522)
T 3vbb_A 259 --DDNSYDEKYLIATSEQPIAALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV-YSSPHDN 335 (522)
T ss_dssp -------CCEEECSSTHHHHHTTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE-EECSSTT
T ss_pred --ccccCcceeEcccCcHHHHHHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE-EeCCChH
Confidence 000023456665555544 222211 1 2699999999999641 101224999999985 55433
Q ss_pred HHHHHHHHHHHH
Q 011197 281 DDMACATAYLQL 292 (491)
Q Consensus 281 ~lm~~~e~li~~ 292 (491)
+..+..++++..
T Consensus 336 ~s~~e~e~ml~~ 347 (522)
T 3vbb_A 336 KSWEMFEEMITT 347 (522)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 367777776665
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00033 Score=74.40 Aligned_cols=145 Identities=14% Similarity=0.126 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHHHHH-HHhhCCcEEeecceeeccCC---CCCC-----CceeeeecCCCcc--cccCCCCCCCCCCCC-
Q 011197 145 GAVARVRNALAYATHK-FFQENGFIWISSPIITASDC---EGAG-----EQFCVTTLIPSSR--EAAESPVDAIPKTKD- 212 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~-ff~~~~F~EV~TPiL~~~~~---eg~~-----~~F~vt~~~~~~~--~~~~~~~~~~~~~~~- 212 (491)
-.-.+++..|.+.+++ ++.+.||.||.||+|.+... .|.. +.|.++......+ +... .+......+
T Consensus 228 P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~--~~~~~~~~~~ 305 (522)
T 2cja_A 228 PQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEV--ADYYKVTHEV 305 (522)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHH--HHHHHHHSSC
T ss_pred chHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhh--hhhhhccccc
Confidence 4567788899999996 68999999999999998532 1111 2333321000000 0000 000000000
Q ss_pred CCcCccccccCcccccccchhhHH-HHHh----c--cCC-ceEE-EccccccCCC--CCCcccccccceeeEeccCCHHH
Q 011197 213 GLIDWSQDFFEKPAFLTVSGQLNA-ETYA----T--ALS-NVYT-FGPTFRAENS--NTSRHLAEFWMIEPELAFADLKD 281 (491)
Q Consensus 213 ~~~~~~~~~f~~~~~L~~Spql~l-ql~~----~--g~~-rvfe-I~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~ 281 (491)
...++...--+.++||+-..+... .+.. + .+. |+|+ |++|||+|.. ++---.-||+|.|++. |.+.++
T Consensus 306 ~~~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~pe~ 384 (522)
T 2cja_A 306 PTKLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGTKEE 384 (522)
T ss_dssp CHHHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEEHHH
T ss_pred cccccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeChHH
Confidence 000000000023445554443322 2221 1 122 7999 9999999933 1112335999999998 788888
Q ss_pred HHHHHHHHHHH
Q 011197 282 DMACATAYLQL 292 (491)
Q Consensus 282 lm~~~e~li~~ 292 (491)
..+..++++..
T Consensus 385 s~ee~ee~i~~ 395 (522)
T 2cja_A 385 VLKCAEELHDR 395 (522)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888888833
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0055 Score=59.79 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=54.6
Q ss_pred HHHHHH--HHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccc
Q 011197 154 LAYATH--KFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVS 231 (491)
Q Consensus 154 i~~~iR--~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~S 231 (491)
+.+.+| +.|.+.||.||.||++.....-.. +.| ...+ +.-+..+--++
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f--~d~~-------------------------g~~l~LRpd~T-- 55 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF--LDRK-------------------------GNLFSIREDFT-- 55 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE--EETT-------------------------SCEEEECCCHH--
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc--CCCC-------------------------CCEEEeCCcCh--
Confidence 344555 999999999999999998654221 233 1110 01111111111
Q ss_pred hhhHH-HHHhc--cCCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 232 GQLNA-ETYAT--ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 232 pql~l-ql~~~--g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
|.+.. ++.-. .--|.|++|+|||.|.+. . -||||+++|.-..+
T Consensus 56 ~~~a~~~~~~~~~~p~R~~y~g~vfR~e~~~-~---Ref~Q~g~ei~g~~ 101 (275)
T 1usy_A 56 KTVLNHRKRYSPDSQIKVWYADFVYRYSGSD-L---VAEYQLGLEKVPRN 101 (275)
T ss_dssp HHHHHHHTTCTTCCCEEEECCEEEEEEETTE-E---EEEEEEEEEEESCC
T ss_pred HHHHHHHhhcCCCCceEEEEeceEEecCCCC-C---CeeeEeCEEEecCC
Confidence 22222 12111 124899999999999773 2 79999999997664
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=96.46 E-value=0.03 Score=48.29 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=64.7
Q ss_pred ceeeccccCCcccCC-----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch-hhhhhcCCCCCc
Q 011197 11 KLKIVDVKGGPNEGL-----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTGA 84 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~-----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-~~~~~~~L~~gd 84 (491)
.++|++|++....++ ...=..|++.|+|.++.....-.-+.|.|+|| ..|.+....+...- ..... +..|+
T Consensus 8 PvtIkqil~a~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG-~~I~~~~W~~~~~~~~~~~~--~~~g~ 84 (132)
T 3kdf_D 8 PCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPET 84 (132)
T ss_dssp ECCHHHHHTCEESSSCEEETTEECCEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEEC---------CC--CCTTC
T ss_pred eEEHHHHhhCccCCCcEEECCEEEEEEEEEEEEEEEEEcCCeEEEEEECCCC-CEEEEEEEccCCCccccccc--ccCCC
Confidence 367788866431111 11224589999999998876655668999997 25999887653211 11334 99999
Q ss_pred EEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 85 SIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 85 ~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
+|.|.|.+..-+. ...|.+..+..+..
T Consensus 85 yVrV~G~l~~f~g---~~qi~~~~ir~v~d 111 (132)
T 3kdf_D 85 YVKVAGHLRSFQN---KKSLVAFKIMPLED 111 (132)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEECSS
T ss_pred EEEEEEEEEeECC---EEEEEEEEEEEcCC
Confidence 9999999987543 47788887776543
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0024 Score=63.89 Aligned_cols=140 Identities=19% Similarity=0.175 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC-------CceeeeecCCC-cccccCCCCCCCCCCCCCCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG-------EQFCVTTLIPS-SREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~-------~~F~vt~~~~~-~~~~~~~~~~~~~~~~~~~~ 215 (491)
...-+++..+.+.+++ ..+.||.||.||.|..... ++.+ ..|.+...... .++... +....++ .
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~l-----l~~~~~~-~ 133 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAA-----VSRFDAG-G 133 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHH-----HHHHHTT-S
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhh-----hhhhccc-c
Confidence 4566778889999999 8899999999999988543 2221 23333211000 000000 0000000 0
Q ss_pred CccccccCcccccccchhhHH-HHHhc-c-C----CceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHHHH
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYAT-A-L----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~~-g-~----~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~ 288 (491)
++....-+..+||.-..+..+ .+... | + -|+-.+++|||.|.+.+--..-+|+|.|+-. |.+-+++.+..++
T Consensus 134 ~~~~~l~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~tpEqs~~e~e~ 212 (346)
T 3mf2_A 134 DWTTSLSPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IGTPDDVSDFRER 212 (346)
T ss_dssp CGGGGEEEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EESHHHHHHHHHH
T ss_pred ccccccCCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-EeCHHHHHHHHHH
Confidence 010111123456666666666 44442 2 2 3566799999999876666777999999965 5789999999999
Q ss_pred HHHH
Q 011197 289 YLQL 292 (491)
Q Consensus 289 li~~ 292 (491)
++..
T Consensus 213 l~~~ 216 (346)
T 3mf2_A 213 WMVR 216 (346)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8877
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.034 Score=48.18 Aligned_cols=97 Identities=11% Similarity=0.122 Sum_probs=65.1
Q ss_pred ceeeccccCCccc--CC-----CCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch--hhhhhcCCC
Q 011197 11 KLKIVDVKGGPNE--GL-----DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY--DQVKSGLIT 81 (491)
Q Consensus 11 ~~~i~~l~~~~~~--~~-----~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~--~~~~~~~L~ 81 (491)
.++|++|++.... ++ ...=..|++.|+|.+++....-.-+.|.|+|| .|.+....+.... ..... +.
T Consensus 11 PvtIkqil~a~~~~~~~~f~i~g~~i~~V~iVG~V~~~~~~~~~~~~~ldD~TG--~I~~~~W~~~~~~~~~~~~~--~~ 86 (136)
T 4gop_B 11 PVTIRQILNAEQPHPDAEFILDGAELGQLTFVAVVRNISRNATNVAYSVEDGTG--QIEVRQWLDSSSDDSSKASE--IR 86 (136)
T ss_dssp ECCHHHHHHCBCCSSSCCCBSSSSBCCEEEEEEEEEEEEECSSEEEEEEECSSC--EEEEEEECC--------CCS--CC
T ss_pred eEEHHHHhhccccCCCCcEEECCEEEEEEEEEEEEEEEEecCCeEEEEEECCCC--CEEEEEecccCCcccccccc--cC
Confidence 4778888654211 00 12235689999999998876655567999997 4999887643221 12335 99
Q ss_pred CCcEEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 82 ~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
.|++|.|.|.+..-+. ...|.+..+..+..
T Consensus 87 ~g~yVrV~G~v~~f~g---~~qi~~~~ir~v~d 116 (136)
T 4gop_B 87 NNVYVRVLGTLKSFQN---RRSISSGHMRPVID 116 (136)
T ss_dssp TTCEEEEEEEEEEETT---EEEEEESEEEECSS
T ss_pred CCCEEEEEEEEEEeCC---EEEEEEEEEEECCC
Confidence 9999999999977543 46788887775543
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.038 Score=49.29 Aligned_cols=80 Identities=15% Similarity=0.225 Sum_probs=61.5
Q ss_pred CcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc-h-hhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 29 GLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-Y-DQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 29 ~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~-~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
=+.|+|.|.|.+++...+...+.|-|+|| ..|.|++..+... - ..... +..|++|.|.|.+..-.. +.+|.+
T Consensus 47 I~~V~IvGiVv~~~~~~~~~~ytIDD~TG-~~I~cv~w~~~~~~~~~~~~~--l~~G~~VrV~G~v~~fr~---~rqI~~ 120 (159)
T 3kf6_A 47 IRWIQIVGYIAAIDIYEGKHVLTVDDCSG-MVLRVVFIIQDDFSMSKRAIS--MSPGNVVCVFGKINSFRS---EVELIA 120 (159)
T ss_dssp ECEEEEEEEEEEEEEETTEEEEEEECSSS-CEEEEEEEGGGCHHHHHHHTT--CCTTCEEEEEEEEECSSS---SCEEEE
T ss_pred EEEEEEEEEEEEEEEeCCEEEEEEecCCC-CeEEEEEEccCCCCccccccc--CCCCCEEEEEEEEEeeCC---EEEEEE
Confidence 35699999999999876777788999998 3699998765421 1 11224 899999999999976543 579999
Q ss_pred eeEEEEcc
Q 011197 107 NKIVLVGK 114 (491)
Q Consensus 107 ~~i~ils~ 114 (491)
+++.++..
T Consensus 121 ~~i~~v~d 128 (159)
T 3kf6_A 121 QSFEELRD 128 (159)
T ss_dssp EEEEEECS
T ss_pred EEEEECCC
Confidence 99998864
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.28 E-value=0.048 Score=45.14 Aligned_cols=88 Identities=13% Similarity=0.225 Sum_probs=65.9
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeec-------C---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcC
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA-------Q---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGL 79 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~-------~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~ 79 (491)
...+|+||.. +..|.|.|+|.++-. . +++.=+.|.|.+| +|.+.+..+... . .
T Consensus 4 ~~~~I~dL~~---------~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG--~IrvtlW~~~a~---~-~-- 66 (105)
T 3dm3_A 4 DTYNIGELSP---------GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETG--SIRVTLWDNLTD---I-D-- 66 (105)
T ss_dssp CEECGGGCCS---------SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTE--EEEEEEEGGGGG---S-C--
T ss_pred cceEHHHCCC---------CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECcccc---c-c--
Confidence 4467777753 267999999988631 2 2355578899986 599988754321 1 4
Q ss_pred CCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCC
Q 011197 80 ITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~ 116 (491)
|..||+|.+.|.++....+ ++||++.+...+.+|.
T Consensus 67 l~~Gdvv~i~g~vk~~~~g--~~eL~~g~~~~i~~~~ 101 (105)
T 3dm3_A 67 VGRGDYVRVRGYIREGYYG--GLECTANYVEILKKGE 101 (105)
T ss_dssp CCTTCEEEEEEEEEECTTS--SEEEEEEEEEEEECCC
T ss_pred cCCCCEEEEEEEEEEccCC--CEEEEeCCceEEEecc
Confidence 9999999999999887543 6999999999999986
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0099 Score=61.99 Aligned_cols=108 Identities=12% Similarity=-0.052 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHh-hCC-cEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccC
Q 011197 146 AVARVRNALAYATHKFFQ-ENG-FIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~-~~~-F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (491)
.-..+|+.|++..|..|. +++ +.||+||+...-...|.- +-|.
T Consensus 102 ~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~-----------------------------------d~~~ 146 (459)
T 3ikl_A 102 LGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGD-----------------------------------SAFR 146 (459)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSC-----------------------------------SCCT
T ss_pred cHHHHHHHHHHHHHHHHhhccCceEeeccccccccccCcch-----------------------------------hhhc
Confidence 356788999986665554 355 788999993332111211 2222
Q ss_pred ccccccc-chhhHHH----HHhcc---C-CceEEEccccccCC--CCCCccc----ccccceeeEeccCCHHHHHHHHHH
Q 011197 224 KPAFLTV-SGQLNAE----TYATA---L-SNVYTFGPTFRAEN--SNTSRHL----AEFWMIEPELAFADLKDDMACATA 288 (491)
Q Consensus 224 ~~~~L~~-Spql~lq----l~~~g---~-~rvfeI~~~FR~E~--~~t~rHl----~EFtmlE~e~~~~~~~~lm~~~e~ 288 (491)
.||+. .-|-+.. .+-.. + =++.|||+|||+|. + +.+|- -||||.|.+ -|.+-++..+..+.
T Consensus 147 --~~LRPeTaqg~~~nfk~~~~s~r~~LP~~iaqig~~FR~E~g~~-~~~~GL~RvrEFtq~E~~-~F~~Pe~~~e~~~~ 222 (459)
T 3ikl_A 147 --GGLRENLLHGALEHYVNCLDLVNKRLPYGLAQIGVCFHPVFDTK-QIRNGVKSIGEKTEASLV-WFTPPRTSNQWLDF 222 (459)
T ss_dssp --TB-CSCSHHHHHHHTTTTTGGGTTBSSEEEEEEEEEECCC-----------CCCCEEEEEEEE-EEECGGGHHHHHHH
T ss_pred --ceECCCCChhHHHHHhhhhhhccccCCeEEEEEeeeeecccccc-cCCCCcccccceeeeeEE-EEeChhHHHHHHHH
Confidence 45553 2232221 11111 1 15899999999994 2 33332 599999998 46776666666666
Q ss_pred HHHH
Q 011197 289 YLQL 292 (491)
Q Consensus 289 li~~ 292 (491)
++..
T Consensus 223 ~~~~ 226 (459)
T 3ikl_A 223 WLRH 226 (459)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5555
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=96.09 E-value=0.087 Score=42.84 Aligned_cols=84 Identities=17% Similarity=0.217 Sum_probs=60.6
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeee---c----CC---CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR---A----QS---SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLIT 81 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R---~----~g---kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~ 81 (491)
.+|+||.. +..|.+.|+|.++- . .| ++.=+.|.|.|| +|.+.+..+... . . +.
T Consensus 3 ~kI~dl~~---------g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG--~I~~tlW~~~~~---~-~--i~ 65 (97)
T 3e0e_A 3 YKISELMP---------NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTG--SIRGTLWNELAD---F-E--VK 65 (97)
T ss_dssp ECGGGCCT---------TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTE--EEEEEEEGGGGG---C-C--CC
T ss_pred eEHHHCCC---------CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCC--cEEEEEECCccc---c-c--cC
Confidence 46777753 36799999998863 2 22 355578899996 599987754321 1 4 99
Q ss_pred CCcEEEEEEEEEecCCCceeEEEEEeeEEEEccC
Q 011197 82 TGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 82 ~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~ 115 (491)
.||+|.|.|.+..... .+||.+.+...+.+|
T Consensus 66 ~Gdvv~i~g~v~~~~~---~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 66 KGDIAEVSGYVKQGYS---GLEISVDNIGIIEKS 96 (97)
T ss_dssp TTCEEEEEEEEEEC-----CEEEEEEEEEEEECC
T ss_pred CCCEEEEEEEEEEcCC---eEEEEECCCcEEEEC
Confidence 9999999998866543 699999999888776
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0028 Score=69.72 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHh-hCCcEEeecceeeccC
Q 011197 145 GAVARVRNALAYATHKFFQ-ENGFIWISSPIITASD 179 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~-~~~F~EV~TPiL~~~~ 179 (491)
-.-.+++..|.+.+|+.|. ..||.||.||+|++..
T Consensus 98 P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~ 133 (693)
T 2zt5_A 98 PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEP 133 (693)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHH
T ss_pred CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHH
Confidence 4567889999999999998 6699999999999853
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.016 Score=60.71 Aligned_cols=131 Identities=9% Similarity=0.043 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHHHHH--hhCCcEEeecceeeccCCCCC---CCceeeeecCCCcccccCCCCCCCCCCCCC-C----c
Q 011197 146 AVARVRNALAYATHKFF--QENGFIWISSPIITASDCEGA---GEQFCVTTLIPSSREAAESPVDAIPKTKDG-L----I 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff--~~~~F~EV~TPiL~~~~~eg~---~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~-~----~ 215 (491)
.-.+++..|.+.+++.+ .+.|+.||+||+|.+..--.+ +..|...++.. .. .+ +| + .
T Consensus 60 ~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e-----------~~-~~-~g~~~eem~ 126 (454)
T 1g5h_A 60 LGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIRE-----------IL-QD-REPSKEQLV 126 (454)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHH-----------HH-CC----CHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHH-----------Hh-hc-cCCCHHHHH
Confidence 35788899999999774 589999999999998652111 11110111100 00 00 00 0 0
Q ss_pred CccccccCccccccc--chhhHH---HHHhc---cC-CceEEEccccc---cCCCCCCcc----cccccceeeEeccCCH
Q 011197 216 DWSQDFFEKPAFLTV--SGQLNA---ETYAT---AL-SNVYTFGPTFR---AENSNTSRH----LAEFWMIEPELAFADL 279 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~--Spql~l---ql~~~---g~-~rvfeI~~~FR---~E~~~t~rH----l~EFtmlE~e~~~~~~ 279 (491)
..-.++++.+.||+. +|-.+. ..+-. -+ =+++|||+||| ||-+ .+| .-||||.|++. |++.
T Consensus 127 ~~~~~~~~~~~~LRPeta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s--~~~Gl~R~REF~q~E~~~-F~~p 203 (454)
T 1g5h_A 127 AFLENLLKTSGKLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQ--TPSSVTRVGEKTEASLVW-FTPT 203 (454)
T ss_dssp HHHHHHHHHSCEECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC-----------CEEEEEEEEEEEE-EECH
T ss_pred HHHHhhcCcceeecccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCccccc--CCCCccccCceehhheEE-EeCH
Confidence 000012344566664 322222 22222 23 26999999999 6853 243 46999999985 7788
Q ss_pred HHHHHHHHHHHHH
Q 011197 280 KDDMACATAYLQL 292 (491)
Q Consensus 280 ~~lm~~~e~li~~ 292 (491)
++..+..+.++..
T Consensus 204 e~~~e~~~~~~~~ 216 (454)
T 1g5h_A 204 RTSSQWLDFWLRH 216 (454)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHH
Confidence 7776666665554
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.054 Score=60.54 Aligned_cols=112 Identities=15% Similarity=0.095 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhhCCcEEeecceeeccCCCC----CCC-ceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 151 RNALAYATHKFFQENGFIWISSPIITASDCEG----AGE-QFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 151 Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg----~~~-~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
..++.+.+|+.|...||.|+.|..+++..--. ..+ .+.+ .|| .+.+ -
T Consensus 495 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L--~NP----------------------is~e----~ 546 (795)
T 2rhq_B 495 RQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISL--LMP----------------------MSEA----H 546 (795)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEEC--SSC----------------------SCTT----S
T ss_pred HHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEE--cCC----------------------Cchh----h
Confidence 45678889999999999999999998764210 112 1222 221 0011 1
Q ss_pred cccccchhhHH-HHHh----ccCC--ceEEEccccccCCCCCCcccccccceeeEecc-------------CCHHHHHHH
Q 011197 226 AFLTVSGQLNA-ETYA----TALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAF-------------ADLKDDMAC 285 (491)
Q Consensus 226 ~~L~~Spql~l-ql~~----~g~~--rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~-------------~~~~~lm~~ 285 (491)
..|++|-=--+ +.+. .+.. |+||||+|||.++. +..| +||+||..-++. .|+.++...
T Consensus 547 svLRtsLlpgLL~~l~~N~~r~~~~vrlFEiG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~ 624 (795)
T 2rhq_B 547 ATLRQSLLPHLIEATAYNVARKNKDVRLYEIGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGV 624 (795)
T ss_dssp SEECSCSHHHHHHHHHHHHHTTCCCEEEEEEEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHH
T ss_pred hhhhhccHHHHHHHHHHHhcCCCCCeEEEEEeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHH
Confidence 23555544333 4333 2333 79999999997543 2357 999999986664 589999999
Q ss_pred HHHHHHH
Q 011197 286 ATAYLQL 292 (491)
Q Consensus 286 ~e~li~~ 292 (491)
+|.++..
T Consensus 625 le~ll~~ 631 (795)
T 2rhq_B 625 VDRVAEK 631 (795)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998887
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=95.69 E-value=0.042 Score=45.96 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=57.9
Q ss_pred CCcEEEEEEEEeee---e----cC---CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCC
Q 011197 28 VGLMIVVAGWVRTL---R----AQ---SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQG 97 (491)
Q Consensus 28 ~~~~V~v~G~V~~~---R----~~---gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~ 97 (491)
.|+.+.+.|.|.++ | .. +++..+.|.|++| .|.+.+-.+... .... |..|++|.|.|.+....-
T Consensus 15 ~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG--~I~~t~w~~~~~--~~~~--l~~G~vv~i~g~~v~~~f 88 (115)
T 2k50_A 15 EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG--ELRAVFWTENIK--LLKK--FREGDVIRIKDVNIRGGF 88 (115)
T ss_dssp TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE--EEEEEEETTGGG--GGGT--CCTTSEEEEEEEEECCCS
T ss_pred CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC--eEEEEEeCchhh--hhhc--CCCCCEEEEEeeEEcccc
Confidence 46778999999988 2 12 3688899999996 599988865421 2235 999999999999865421
Q ss_pred CceeEEEEEeeEEEEccC
Q 011197 98 SKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 98 ~~~~~el~~~~i~ils~~ 115 (491)
.+.++|.+.+...+.++
T Consensus 89 -~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 89 -GGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp -SSSCEEEECTTCCEEEE
T ss_pred -CCeEEEEECCCceEEEC
Confidence 13578887765555444
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.043 Score=59.25 Aligned_cols=112 Identities=11% Similarity=0.061 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCC--C------CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccC
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDC--E------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFE 223 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~--e------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 223 (491)
.++.+.+|+.|...||.||.|+.+++..- + +..+.+.+ .|| .+.++
T Consensus 394 ~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L--~NP----------------------is~e~-- 447 (589)
T 3l4g_B 394 NKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHI--SNP----------------------KTAEF-- 447 (589)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBB--SSC----------------------SSGGG--
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEE--cCC----------------------CchhH--
Confidence 45688899999999999999999987421 0 11122221 121 01111
Q ss_pred cccccccchhhHH-HHHhccC-----CceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 224 KPAFLTVSGQLNA-ETYATAL-----SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 224 ~~~~L~~Spql~l-ql~~~g~-----~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
..|++|-=--+ +.+.... =|+||+|+|||.++. ..+|.+|+.++..-+... ++.++...++.++..
T Consensus 448 --svmRtsLlpgLL~~l~~N~~~~~~vrlFEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~ 521 (589)
T 3l4g_B 448 --QVARTTLLPGLLKTIAANRKMPLPLKLFEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQL 521 (589)
T ss_dssp --SEECSCSHHHHHHHHHHTTTSCSCEEEEEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHHHHhcCCCceEEEEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 24566543333 5443221 269999999998765 467889999999877654 578877777765555
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.055 Score=45.08 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=60.4
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (491)
++++++... ..+..|+|.|.|.+.-..-+ ..++|++| .|+|-++.+. |. -.. +++++-|.|.|.
T Consensus 26 ~TV~~a~~~------~Dd~~V~L~G~Iv~~~~~d~---Y~F~D~TG--~I~VeId~~~--w~-g~~--v~p~~~Vri~Ge 89 (109)
T 1nnx_A 26 TTVESAKSL------RDDTWVTLRGNIVERISDDL---YVFKDASG--TINVDIDHKR--WN-GVT--VTPKDTVEIQGE 89 (109)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTE---EEEEETTE--EEEEECCGGG--ST-TCC--CCTTSCEEEEEE
T ss_pred EeHHHHhhC------cCCCeEEEEEEEEEEeCCCe---EEEECCCc--cEEEEEChhh--cC-Ccc--cCCCCEEEEEEE
Confidence 566666643 57889999999987643322 35799996 5998887643 21 124 899999999999
Q ss_pred EEecCCCceeEEEEEeeEEEEcc
Q 011197 92 VVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 92 v~~~~~~~~~~el~~~~i~ils~ 114 (491)
+-+.-. ..||.|..|+++.+
T Consensus 90 vDkd~~---~~eIdV~~i~~~~~ 109 (109)
T 1nnx_A 90 VDKDWN---SVEIDVKQIRKVNP 109 (109)
T ss_dssp EEEETT---EEEEEEEEEEEC--
T ss_pred ECCCCC---ceEEEEEEEEEccC
Confidence 997543 46999999998753
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.045 Score=51.18 Aligned_cols=113 Identities=15% Similarity=0.129 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCCCC-C-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDCEG-A-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKP 225 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg-~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 225 (491)
.++.+.+|+.|...||.||-|-.+++...-. . .+. |.-.|| .+.+ -
T Consensus 7 ~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~--v~l~NP----------------------ls~e----~ 58 (213)
T 3ig2_A 7 NKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNL--VMLLNP----------------------LSAD----L 58 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGC--EEBSSG----------------------GGCS----C
T ss_pred HHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCe--EEEeCC----------------------cchh----H
Confidence 4678899999999999999999999853211 0 011 111221 0111 1
Q ss_pred cccccchhhHH-HHHhc----cCC--ceEEEccccccCCCCCC-----cccccccceeeEecc-------------CCHH
Q 011197 226 AFLTVSGQLNA-ETYAT----ALS--NVYTFGPTFRAENSNTS-----RHLAEFWMIEPELAF-------------ADLK 280 (491)
Q Consensus 226 ~~L~~Spql~l-ql~~~----g~~--rvfeI~~~FR~E~~~t~-----rHl~EFtmlE~e~~~-------------~~~~ 280 (491)
-.|++|-=--+ +.++. +.. |+||||+||+.++.+.. .+..|..+|-+-++. .|+.
T Consensus 59 ~vmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~ 138 (213)
T 3ig2_A 59 NCMRQTLLFGGLESIAHNANRKNADLKFFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVY 138 (213)
T ss_dssp CEECSCSHHHHHHHHHHC------CCEEEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHhcCCCCCeeEEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHH
Confidence 24666644444 54443 333 79999999997653211 234588888876655 3577
Q ss_pred HHHHHHHHHHHH
Q 011197 281 DDMACATAYLQL 292 (491)
Q Consensus 281 ~lm~~~e~li~~ 292 (491)
|+...+|.++..
T Consensus 139 dlKg~ve~ll~~ 150 (213)
T 3ig2_A 139 ELKAYVENIFKR 150 (213)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888877776666
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=94.54 E-value=0.27 Score=47.65 Aligned_cols=99 Identities=12% Similarity=0.117 Sum_probs=65.7
Q ss_pred cceeeccccCCcccCC--CCCC---cEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccch-hhhhhcCCCCC
Q 011197 10 KKLKIVDVKGGPNEGL--DRVG---LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGY-DQVKSGLITTG 83 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~--~~~~---~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~-~~~~~~~L~~g 83 (491)
..++|++|++....+. ...+ ..|++.|+|.++...+.-.-+.|.|++| ..|.+.+..+...- ..... +..|
T Consensus 47 ~PvtIkqil~a~~~d~~f~i~g~~i~~V~ivG~V~~i~~~~~~~~~~L~D~TG-~~I~~k~W~~~~~~~~~~~~--~~~G 123 (270)
T 2pi2_A 47 VPCTISQLLSATLVDEVFRIGNVEISQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPE 123 (270)
T ss_dssp EECCHHHHHHCEEETTEEEETTEEESEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTT
T ss_pred EEEEHHHHhcCccCCCcEEECCEEEEEEEEEEEEEEEEeccceEEEEEECCCC-CEEEEEEEcCcCcccchhhc--CCCC
Confidence 3488888876521100 0112 3589999999997776656667999997 24899887543211 11234 9999
Q ss_pred cEEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 84 d~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
++|.|.|.+..-+. ...|.+..+..+..
T Consensus 124 ~yVrV~G~v~~f~g---~~qi~i~~ir~v~d 151 (270)
T 2pi2_A 124 TYVKVAGHLRSFQN---KKSLVAFKIMPLED 151 (270)
T ss_dssp CEEEEEEEEEEETT---EEEEEEEEEEECSC
T ss_pred CEEEEEEEEEecCC---eeEEEEEEEEecCC
Confidence 99999999987643 46778777776544
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.89 E-value=0.14 Score=47.81 Aligned_cols=115 Identities=16% Similarity=0.077 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCce----eeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQF----CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAF 227 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F----~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 227 (491)
.++.+.+|+.|...||.||-|-.+++...-..-... .|.-.|| .+.+ --.
T Consensus 7 ~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NP----------------------ls~e----~~v 60 (213)
T 3ica_A 7 YKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNP----------------------LSQE----LNC 60 (213)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSB----------------------SCSS----EEE
T ss_pred HHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCC----------------------ccHH----HHH
Confidence 467889999999999999999999985321100000 0111121 0111 124
Q ss_pred cccchhhHH-HHHh----ccCC--ceEEEccccccCCCC----C-CcccccccceeeEecc-------------CCHHHH
Q 011197 228 LTVSGQLNA-ETYA----TALS--NVYTFGPTFRAENSN----T-SRHLAEFWMIEPELAF-------------ADLKDD 282 (491)
Q Consensus 228 L~~Spql~l-ql~~----~g~~--rvfeI~~~FR~E~~~----t-~rHl~EFtmlE~e~~~-------------~~~~~l 282 (491)
|++|-=--+ +.++ .+.. |+||||+||+.++.. . ..+..|..+|-+.++. .|+.|+
T Consensus 61 mRtsLlpgLL~~~~~N~~r~~~~~~lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~ 140 (213)
T 3ica_A 61 MRQTLLFGGLETLSHNLRRKHLSLYLFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFEL 140 (213)
T ss_dssp ECSSSHHHHHHHHHHHHTTTCSEEEEEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCCCCCeeEEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHH
Confidence 666644443 4433 3554 799999999976431 0 1345688888776655 478999
Q ss_pred HHHHHHHHHH
Q 011197 283 MACATAYLQL 292 (491)
Q Consensus 283 m~~~e~li~~ 292 (491)
...+|.++..
T Consensus 141 Kg~ve~ll~~ 150 (213)
T 3ica_A 141 KAVVEQVLCR 150 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888887766
|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
Probab=93.70 E-value=0.6 Score=38.63 Aligned_cols=87 Identities=20% Similarity=0.173 Sum_probs=61.1
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeeeec--C-CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTLRA--Q-SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ 89 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~--~-gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~ 89 (491)
+|+||.. .+..|.+.|+|.++-. . +....+.|.|.|| +|-+.+..+. .... +..|++|.|+
T Consensus 7 kI~dl~~--------~~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG--~I~~t~W~~~----~~~~--~~~G~~V~i~ 70 (109)
T 2kbn_A 7 KIVDIVE--------NGQWANLKAKVIQLWENTHESISQVGLLGDETG--IIKFTIWKNA----ELPL--LEQGESYLLR 70 (109)
T ss_dssp CTTTCCS--------TTCEEEEEEEEEEEEECCCSSEEEEEEEECTTC--CEEEEEEGGG----CCCC--CCTTCEEEEE
T ss_pred EHHHCCC--------CCCcEEEEEEEEEeEcCCCCeEEEEEEEECCCC--eEEEEEECcc----cccc--cCCCCEEEEE
Confidence 4666653 3577999999999743 2 2344578999997 4888887532 1234 9999999999
Q ss_pred -EEEEecCCCceeEEEEEeeEEEEccCCCC
Q 011197 90 -GNVVPSQGSKQKVELKVNKIVLVGKSDPS 118 (491)
Q Consensus 90 -G~v~~~~~~~~~~el~~~~i~ils~~~~~ 118 (491)
|.+..-+ +.++|.+.+...+.+....
T Consensus 71 n~~v~~~~---G~~~L~v~~~~~I~~~~~~ 97 (109)
T 2kbn_A 71 SVVVGEYN---DRFQVQVNKNSSIEKLSEP 97 (109)
T ss_dssp EEEEEEET---TEEEEEECSSSEEEECSSC
T ss_pred EEEEEEEC---CEEEEEECCceEEEECCCc
Confidence 6666643 3689999887766665433
|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
Probab=93.20 E-value=0.71 Score=47.03 Aligned_cols=77 Identities=13% Similarity=0.247 Sum_probs=59.9
Q ss_pred CCcEEEEEEEEeee-ec-CCCeEEEEEEcCCCccceEEEEeCCccchhh-hhhcCCCCCcEEEEEEEEEecCCCceeEEE
Q 011197 28 VGLMIVVAGWVRTL-RA-QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQ-VKSGLITTGASIWIQGNVVPSQGSKQKVEL 104 (491)
Q Consensus 28 ~~~~V~v~G~V~~~-R~-~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~-~~~~~L~~gd~V~V~G~v~~~~~~~~~~el 104 (491)
....++|.|.|.+. +. .|.=.|+.|.|+++ .|.|++=.....|.. +.. |..||.|.|.|.+.. + .|
T Consensus 283 ~~~~~~v~G~V~~~P~~~~GGHV~f~l~d~~~--~i~c~ayeptk~fr~~vr~--L~~GD~V~v~G~v~~-----g--tL 351 (402)
T 3au7_A 283 NYRSYRLRGRVTLEPYDIEGGHVFFEIDTKFG--SVKCAAFEPTKQFRNVIRL--LRKGDVVEVYGSMKK-----D--TI 351 (402)
T ss_dssp TTCEEEEEEEEEEEEEEETTTEEEEEEEETTE--EEEEEECGGGTTHHHHHTT--CCTTCEEEEEEEEET-----T--EE
T ss_pred cCceEEEEEEEecCcEeccCceEEEEEEcCCC--EEEEEEEccchHHHHHHhc--CCCCCEEEEEEeecC-----C--EE
Confidence 45789999999998 55 47778889999864 599888553223433 456 999999999999765 2 88
Q ss_pred EEeeEEEEccC
Q 011197 105 KVNKIVLVGKS 115 (491)
Q Consensus 105 ~~~~i~ils~~ 115 (491)
.++++++++-+
T Consensus 352 nvEk~~v~~l~ 362 (402)
T 3au7_A 352 NLEKIQIVELA 362 (402)
T ss_dssp EEEEEEEEECC
T ss_pred EEEEEEEcccC
Confidence 99999998775
|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.86 Score=42.47 Aligned_cols=86 Identities=16% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCcEEEEEEEEeeeecCC--------CeEEEEEEcCCCcc-ceEEEEeCCccchhhh-hh-cCCCCCcEEEEEEEEEecC
Q 011197 28 VGLMIVVAGWVRTLRAQS--------SVTFIEVNDGSCLS-NMQCVMTSDAEGYDQV-KS-GLITTGASIWIQGNVVPSQ 96 (491)
Q Consensus 28 ~~~~V~v~G~V~~~R~~g--------kl~Fi~LrD~~g~~-~iQvv~~~~~~~~~~~-~~-~~L~~gd~V~V~G~v~~~~ 96 (491)
.=+.|.|.|.|..++..- ...|+.|-|.||.. .|.|.++.. .+... .. +....|.+|.|+|++..-.
T Consensus 84 PI~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~--~~~~~gl~l~~~~~G~iV~VkG~i~~~r 161 (220)
T 3kf8_A 84 PVNQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQE--QFKEVGLTLDKKNYGKIVELEGEIYNWY 161 (220)
T ss_dssp EECEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHH--HHHTTTCCTTSCCTTCEEEEEEEEEECC
T ss_pred ccEEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHH--HhhccCccccccCCCeEEEEEEEEEeec
Confidence 346799999999997542 35889999999842 466655532 12111 01 0145899999999998753
Q ss_pred C-----CceeEEEEEeeEEEEccC
Q 011197 97 G-----SKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 97 ~-----~~~~~el~~~~i~ils~~ 115 (491)
. +.-+-||.|+++.+++..
T Consensus 162 ~~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 162 DSINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp CSTTTTSCCCEEEEEEEEEEEESS
T ss_pred cccccccccceEEEEEEEEEeccC
Confidence 2 111459999999999875
|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=92.76 E-value=1.3 Score=36.43 Aligned_cols=88 Identities=15% Similarity=0.204 Sum_probs=61.3
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeee-----cCCC---eEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLR-----AQSS---VTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R-----~~gk---l~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~g 83 (491)
++|+||... ...|.+.|+|.++- ..|+ +.=+.|.|.|| +|.+.+..+ . |..|
T Consensus 4 ~kI~dl~pg--------~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG--~I~~tlW~~--------~--l~~G 63 (106)
T 2k75_A 4 VKIRDVSLS--------TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTA--RIRISSFGK--------Q--LQDS 63 (106)
T ss_dssp CCSTTCCTT--------CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSC--EEEEEEESS--------C--CCTT
T ss_pred EEHHHcCCC--------CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCC--eEEEEEEcC--------c--cCCC
Confidence 457777542 34578888887752 2343 66678899996 488887754 2 8899
Q ss_pred cEEEEE-EEEEecCCCceeEEEEEeeEEEEccCCCCCCCC
Q 011197 84 ASIWIQ-GNVVPSQGSKQKVELKVNKIVLVGKSDPSYPIQ 122 (491)
Q Consensus 84 d~V~V~-G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~~ 122 (491)
|+|.|. |.+..-+ +.++|.+.+...+.+.....|+.
T Consensus 64 dvv~i~ng~v~~~~---g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 64 DVVRIDNARVAQFN---GYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEEEEEET---TEEEEEECTTSEEEECCSCCCCS
T ss_pred CEEEEEeeEEeEEC---CEEEEEECCcEEEEECCCCCccc
Confidence 999999 7765543 36999998877777765446654
|
| >4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.47 Score=39.74 Aligned_cols=68 Identities=19% Similarity=0.305 Sum_probs=46.6
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|+.|++-|+|.+.+. + . +.|....+ +.|+|.++... . +..+.+|.|.|++.....+-|...|.+
T Consensus 16 ~~g~~VrivGkV~~~~g-~--~-~~l~s~d~-~~Vtv~l~~~~-------~--~~~~~~vEViG~V~~~~~~~~~~~I~~ 81 (114)
T 4gop_A 16 YVGQTVRIVGKVHKVTG-N--T-LLMQTSDL-GNVEIAMTPDS-------D--VSSSTFVEVTGKVSDAGSSFQANQIRE 81 (114)
T ss_dssp GTTSEEEEEEEEEEEET-T--E-EEEECTTS-CEEEEECCSSC-------C--GGGCSEEEEEEEECTTSSEEEEEEEEE
T ss_pred hCCCeEEEEEEEeeeCC-C--E-EEEEeCCC-CEEEEEeCCCC-------C--cccCcEEEEEEEEcCCCCcccCCeEEE
Confidence 68999999999999985 2 2 34664433 35777776532 2 556899999999985543333466665
Q ss_pred ee
Q 011197 107 NK 108 (491)
Q Consensus 107 ~~ 108 (491)
..
T Consensus 82 ~~ 83 (114)
T 4gop_A 82 FT 83 (114)
T ss_dssp CS
T ss_pred EE
Confidence 43
|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
Probab=91.62 E-value=1 Score=37.67 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred cEEEEEEEEeee---e----cCC--CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEE-EEEEecCCCc
Q 011197 30 LMIVVAGWVRTL---R----AQS--SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQ-GNVVPSQGSK 99 (491)
Q Consensus 30 ~~V~v~G~V~~~---R----~~g--kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~-G~v~~~~~~~ 99 (491)
..|.+.|.|.++ | ..| +..=+.|.|.|| .|.+.+..+.. .. +..|++|.|+ |.+..-+
T Consensus 13 ~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG--~I~~tlW~~~~-----~~--~~~G~vv~i~~g~v~~~~--- 80 (119)
T 1o7i_A 13 ESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKHA-----GS--IKEGQVVKIENAWTTAFK--- 80 (119)
T ss_dssp SSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGGT-----TC--CCTTCEEEEEEEEEEEET---
T ss_pred CcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCC--EEEEEEECChh-----hc--CCCCCEEEEEeEEEEEeC---
Confidence 358899999887 4 224 366677899997 48888875431 24 8999999999 7776543
Q ss_pred eeEEEEEeeEEEEccCC
Q 011197 100 QKVELKVNKIVLVGKSD 116 (491)
Q Consensus 100 ~~~el~~~~i~ils~~~ 116 (491)
+.++|.+.+...+.++.
T Consensus 81 g~~qL~i~~~~~i~~~~ 97 (119)
T 1o7i_A 81 GQVQLNAGSKTKIAEAS 97 (119)
T ss_dssp TEEEEEECTTCEEEECC
T ss_pred CEEEEEECCCEEEEEcC
Confidence 36899998765555543
|
| >3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A | Back alignment and structure |
|---|
Probab=91.54 E-value=0.86 Score=38.54 Aligned_cols=71 Identities=13% Similarity=0.215 Sum_probs=48.9
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|+.|++-|+|.+++..|+.+- |.+.-+ +.++|.++.... .. + +.+|.|.|++.. ..+|.+
T Consensus 20 fvgk~VrivGkV~~~~~~g~~~~--l~s~Dg-~~Vtv~l~~p~~-----~~--l--~~~vEViG~V~~------~~tI~~ 81 (121)
T 3kdf_A 20 FIDKPVCFVGRLEKIHPTGKMFI--LSDGEG-KNGTIELMEPLD-----EE--I--SGIVEVVGRVTA------KATILC 81 (121)
T ss_dssp GTTCEEEEEEEEEEECTTSSEEE--EECTTS-CEEEEECSSCCS-----SC--C--CSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEEE--EEeCCC-CEEEEEeCCCCC-----cc--c--CcEEEEEEEECC------CCeEEE
Confidence 68999999999999997776443 444333 358887775321 12 4 459999999974 246777
Q ss_pred eeEEEEccC
Q 011197 107 NKIVLVGKS 115 (491)
Q Consensus 107 ~~i~ils~~ 115 (491)
..+.-++..
T Consensus 82 ~~~~~fg~~ 90 (121)
T 3kdf_A 82 TSYVQFKED 90 (121)
T ss_dssp EEEEECCCS
T ss_pred EEEEecCCC
Confidence 777766653
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=90.28 E-value=1.2 Score=49.64 Aligned_cols=107 Identities=12% Similarity=0.003 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---C-CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCc
Q 011197 149 RVRNALAYATHKFFQENGFIWISSPIITASDCE---G-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEK 224 (491)
Q Consensus 149 ~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 224 (491)
.-..++.+.+|+.|...||.|+-|-.+++..-- + ..+.+.+ .|| .+.++
T Consensus 489 ~~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L--~NP----------------------is~d~--- 541 (785)
T 1b7y_B 489 EAPYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLL--LNP----------------------LAPEK--- 541 (785)
T ss_dssp THHHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEE--SSC----------------------SSTTS---
T ss_pred CHHHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEE--cCC----------------------Cchhh---
Confidence 345678889999999999999999888875310 0 1222322 222 01111
Q ss_pred ccccccchhhHH-HHHh----cc-C--CceEEEccccccCCCCCCcccccccceeeEecc------------CCHHHHHH
Q 011197 225 PAFLTVSGQLNA-ETYA----TA-L--SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF------------ADLKDDMA 284 (491)
Q Consensus 225 ~~~L~~Spql~l-ql~~----~g-~--~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~------------~~~~~lm~ 284 (491)
..|++|-=--+ +.+. .+ . -|+||+|+||| + +||+||..-++. .|+.|+..
T Consensus 542 -svLRtsLlpgLL~~l~~N~~r~~~~~vrlFEiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg 611 (785)
T 1b7y_B 542 -AALRTHLFPGLVRVLKENLDLDRPERALLFEVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKG 611 (785)
T ss_dssp -SEECSCSHHHHHHHHHHHHHHSCCSCEEEEEEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHH
T ss_pred -hhhhhhhHHHHHHHHHHHhhcCCCCCeEEEEEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHH
Confidence 23555543333 4333 23 3 37999999999 2 789999987765 47999999
Q ss_pred HHHHHHHH
Q 011197 285 CATAYLQL 292 (491)
Q Consensus 285 ~~e~li~~ 292 (491)
.+|.++..
T Consensus 612 ~le~ll~~ 619 (785)
T 1b7y_B 612 YLEALFAR 619 (785)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998887
|
| >2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C | Back alignment and structure |
|---|
Probab=90.19 E-value=1.4 Score=38.22 Aligned_cols=89 Identities=10% Similarity=0.102 Sum_probs=54.8
Q ss_pred CCCCCCCcccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCC
Q 011197 1 MGSKVGEFRKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLI 80 (491)
Q Consensus 1 ~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L 80 (491)
|++.++.-..|+.-+-|.. +.|++|++-|+|.+.-..|+.+ .|+...+ ..|+|.+++.. . -
T Consensus 22 ~~~~m~~~~pRVN~s~L~~-------fvGk~VriVGkV~~~~~~G~~~--~l~s~Dg-~~VtV~l~~pL-------~--~ 82 (142)
T 2pi2_E 22 MVDMMDLPRSRINAGMLAQ-------FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--E 82 (142)
T ss_dssp -CCGGGSCCEEECGGGGGG-------STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--S
T ss_pred ccccccCCcceECHHHHHh-------hCCCEEEEEEEEeEEcCCCCEE--EEEeCCC-cEEEEEeCCCC-------C--c
Confidence 3444555555666655543 6899999999999994344433 4555544 35777665421 1 2
Q ss_pred CCCcEEEEEEEEEecCCCceeEEEEEeeEEEEcc
Q 011197 81 TTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGK 114 (491)
Q Consensus 81 ~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~ 114 (491)
..+-+|.|.|+|... .+|.+..+.-++.
T Consensus 83 ~~~~~VEViG~V~~~------~tI~~~~~~~fGd 110 (142)
T 2pi2_E 83 EISGIVEVVGRVTAK------ATILCTSYVQFKE 110 (142)
T ss_dssp CCCSEEEEEEEECTT------SCEEEEEEEECCC
T ss_pred cCCCEEEEEEEECCC------CcEEEEEEEecCC
Confidence 347799999999442 3566666655554
|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
Probab=89.97 E-value=0.78 Score=38.45 Aligned_cols=57 Identities=19% Similarity=0.285 Sum_probs=40.6
Q ss_pred eEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCCC
Q 011197 61 MQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYPI 121 (491)
Q Consensus 61 iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P~ 121 (491)
|+||+..+.. +.++. |+.|+-|.|+|.+.........++|++++|+.++.....-|+
T Consensus 49 i~vv~~Gk~A--E~~~~--l~kGs~V~VeGrL~trs~~G~kl~l~a~~Ie~l~~~~~~~~~ 105 (115)
T 3fhw_A 49 ISAVALGDLA--LLLAD--TPLGTEMQVQGFLAPARKDSVKVKLHLQQARRIAGSMGRDPL 105 (115)
T ss_dssp EEEEEETHHH--HHHTT--CCTTCEEEEEEEEEESSTTCSSEEEEEEEEEECCCSCCC---
T ss_pred EEEEEEhHHH--Hhhhc--cCCCCEEEEEEEEEECCCCCCEEEEEEEEEEEcCCCCCCCCc
Confidence 7888876432 22455 999999999999987433225799999999999876554554
|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.87 E-value=0.64 Score=38.72 Aligned_cols=92 Identities=10% Similarity=0.160 Sum_probs=63.1
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeee---ec------CCCeEEEEEEcCCCccceEEEEeCCcc-chhhhhhcCC
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLI 80 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~-~~~~~~~~~L 80 (491)
-+.|++|... ....+|+|||.++ |. .|++.=++|.|.+| .|++.+..+.. .| ... |
T Consensus 4 ~~~Is~L~p~--------~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~De~G--~I~at~~~~~~~~f--~~~--l 69 (114)
T 1ynx_A 4 IFAIEQLSPY--------QNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFLDTSG--EIRATAFNDFATKF--NEI--L 69 (114)
T ss_dssp BCCGGGCCTT--------TCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEEETTE--EEEEEECHHHHHHH--HHH--S
T ss_pred eEEHHHCCCC--------CCceEEEEEEEEeccceEEecCCCCceEEEEEEECCCC--eEEEEECHHHHHHH--Hhh--c
Confidence 4678888653 2247889999864 21 36788889999997 69999976432 12 234 9
Q ss_pred CCCcEEEEEE-EEEecCCC----ceeEEEEEeeEEEEccCC
Q 011197 81 TTGASIWIQG-NVVPSQGS----KQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 81 ~~gd~V~V~G-~v~~~~~~----~~~~el~~~~i~ils~~~ 116 (491)
..|+++.|.+ .|...... ...+||....-+.+.+|.
T Consensus 70 ~eG~vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~~ 110 (114)
T 1ynx_A 70 QEGKVYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEECF 110 (114)
T ss_dssp CSSSEEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEESC
T ss_pred ccCcEEEECCcEEEECCCCcccCCCCEEEEECCCCEEEECC
Confidence 9999999997 44443221 247899988777777764
|
| >3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=4.7 Score=41.26 Aligned_cols=28 Identities=25% Similarity=0.373 Sum_probs=23.8
Q ss_pred CccceeccHHHHHHHHcCCCCccccccc
Q 011197 455 PHAGFGLGFERLVQFATGVENIRDAIPF 482 (491)
Q Consensus 455 p~~G~glGidRL~m~l~g~~~Irdvi~F 482 (491)
|+---|+|+|||++++-|.+|+=|+=+|
T Consensus 232 k~IDTGmGLERla~vlQg~~snYdtDlf 259 (441)
T 3hy0_A 232 PSVDTAMGLERIAAVLQHVNSNYDIDLF 259 (441)
T ss_dssp EEEEEEEEHHHHHHHHTTCSSGGGSHHH
T ss_pred CceecCCCHHHHHHHHcCCCccccchhH
Confidence 5666999999999999999999887444
|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
Probab=81.20 E-value=1.8 Score=50.17 Aligned_cols=80 Identities=10% Similarity=0.198 Sum_probs=47.6
Q ss_pred CCCcEEEEEEEEeeeecC----C-CeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCcee
Q 011197 27 RVGLMIVVAGWVRTLRAQ----S-SVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQK 101 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~----g-kl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~ 101 (491)
..|+.|+++|.|.+++.. | +++|+.|.|.+| .+.|++-++. |+..+ ..|..+.+|.|+|.+.... .
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg--~~evvvf~~~--~~~~~-~~l~~~~~~~v~G~v~~~~----~ 1110 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETG--ALEVVVFGRA--YEGVS-PKLKEDIPLLVLAEVEKGE----E 1110 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTE--EEEEC----------------CTTCEEEEEEEEC--------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCC--CEEEEEcHHH--HHHHH-HHhccCCEEEEEEEEEECC----C
Confidence 357889999999988652 2 499999999996 4999887653 34333 2389999999999997653 3
Q ss_pred EEEEEeeEEEEccC
Q 011197 102 VELKVNKIVLVGKS 115 (491)
Q Consensus 102 ~el~~~~i~ils~~ 115 (491)
+.|.++++.-++.+
T Consensus 1111 ~~l~~~~i~~l~~~ 1124 (1220)
T 2hpi_A 1111 LRVLAQAVWTLEEV 1124 (1220)
T ss_dssp -CEEEEEEEEHHHH
T ss_pred cEEEEeeeecHHHH
Confidence 77888888766544
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=80.34 E-value=0.67 Score=47.43 Aligned_cols=49 Identities=24% Similarity=0.441 Sum_probs=33.7
Q ss_pred EEEEEEeCCee-EeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCC
Q 011197 403 AAMDMLVPRIG-ELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGV 473 (491)
Q Consensus 403 ~~fdl~~~G~g-Ei~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~ 473 (491)
--|+.+.+|.| .|++|+ ||+.+.+.+ | |..|..||+||+|||+.++...
T Consensus 281 ~vFe~~~~~~g~~i~~GG----RYD~L~~~f---G---------------~~~pavGfaiglerL~~~l~~~ 330 (400)
T 3od1_A 281 VVFEGYGNRLGVPLCSGG----RYDELLSKF---H---------------RPAQATGFGVRIDLLVEALNGE 330 (400)
T ss_dssp EEEEEEETTCSSEEEEEE----ECTTHHHHT---T---------------CCCCEEEEEEEHHHHHHHHCC-
T ss_pred eEEEEEECCCCCeeeccc----ccchhhhcc---C---------------CCCCEEEEEeeHHHHHHHHHhc
Confidence 45999998764 777776 333333322 1 2258999999999999988654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 491 | ||||
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 5e-65 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 4e-62 | |
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 4e-61 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 2e-55 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 5e-54 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 3e-52 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 6e-49 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 2e-12 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 9e-11 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 4e-09 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 2e-05 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 6e-05 | |
| d1kmma2 | 322 | d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisR | 0.003 |
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 210 bits (535), Expect = 5e-65
Identities = 89/351 (25%), Positives = 139/351 (39%), Gaps = 52/351 (14%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
++ R A +V+ AL ++ F I +P + + EG F V
Sbjct: 3 YVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------ 56
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRA 255
D+FEK A+L S QL + VY P +R
Sbjct: 57 ------------------------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRM 92
Query: 256 ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTW 315
E +TSRHL E+ ++ E+ F ++D+ L + + +
Sbjct: 93 EEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPS 152
Query: 316 IEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTE---E 372
+ D +L++ +A +L K E G DL E ER L E E
Sbjct: 153 FPQ------------DIPRLTHAEAKRIL-----KEELGYPVGQDLSEEAERLLGEYAKE 195
Query: 373 AFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 432
+G + V+ YP+ ++ FY +DG T + L+ R E+ G QR R E L L
Sbjct: 196 RWGSDWLFVTRYPRSVRPFYTYPEEDGTTRS--FDLLFRGLEITSGGQRIHRYEELLESL 253
Query: 433 DELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483
++ +++ YL++ YG PH GF +G ERL Q G+ N+R A FP
Sbjct: 254 KAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 202 bits (515), Expect = 4e-62
Identities = 71/360 (19%), Positives = 117/360 (32%), Gaps = 81/360 (22%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIW----ISSPIITASDCEGAGEQFCVTT 191
+ + ++ + FF + GF W I SPI + AGE
Sbjct: 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGE------ 55
Query: 192 LIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-NAETYATALSNVYTFG 250
G+ + + LT S L A L ++
Sbjct: 56 ---------------------GMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLS 94
Query: 251 PTFRAEN--SNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKED 308
P R E+ + RH EF ++ E+ A ++D M +
Sbjct: 95 PNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLV------------------ 136
Query: 309 MDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERY 368
G+ + R+F + + E SE
Sbjct: 137 ---------YGLFRKAEEWTGREFPKTKRFEVFEY-------------------SEVLEE 168
Query: 369 LTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYL 428
+ + + I + + DG +L GE+ G +RE E +
Sbjct: 169 FGSDEKASQEMEEPFWIINIPREFYDREVDGFWRNYDLILPYGYGEVASGGEREWEYEKI 228
Query: 429 EGRLDELKLNRDSYWWYLDLRHYGSV-PHAGFGLGFERLVQFATGVENIRDAIPFPRTPG 487
++ + LN DS+ YL++ G + P AG G+G ERLV+F G ++I + PFPR PG
Sbjct: 229 VAKIRKAGLNEDSFRPYLEIAKAGKLKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPG 288
|
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 202 bits (513), Expect = 4e-61
Identities = 83/358 (23%), Positives = 140/358 (39%), Gaps = 40/358 (11%)
Query: 136 HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195
+ RT T A+ R++ + ++ F + +P + + EG F V
Sbjct: 32 VIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV------ 85
Query: 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATA-LSNVYTFGPTFR 254
+F+ A+L S Q N + A VY GP FR
Sbjct: 86 ------------------------TYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFR 121
Query: 255 AENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNT 314
AENSNT RH+ EF ++ E+AF + ++ + L + +++
Sbjct: 122 AENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELF---VFIFSELPKRFAHEIELVRK 178
Query: 315 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 374
++ + V+L+Y + IE+L A K+ + + + L + +
Sbjct: 179 QYP---VEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGK-LVRDKY 234
Query: 375 GGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDE 434
I+ +P EI+ FY + + R E++ G+QR L+ R+
Sbjct: 235 DTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGEEILSGAQRIHDHALLQERMKA 294
Query: 435 LKLNRD--SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490
L+ + Y D YG PHAG G+G ER+V F ++NIR A FPR P +
Sbjct: 295 HGLSPEDPGLKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLR 352
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 186 bits (473), Expect = 2e-55
Identities = 78/378 (20%), Positives = 128/378 (33%), Gaps = 68/378 (17%)
Query: 120 PIQKKRVSREFLRTKA-HLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITAS 178
P+ V+ E R K +L R + R + +F ++GF+ I +P++T +
Sbjct: 3 PLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKA 62
Query: 179 DCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAET 238
EGA + S+ K L S QL +
Sbjct: 63 TPEGARDYLV----------------------------PSRVHKGKFYALPQSPQLFKQL 94
Query: 239 YATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQ 297
+ Y FR E+ R EF I+ E +F A ++
Sbjct: 95 LMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDVETSFMTAPQVREVMEALVR------ 147
Query: 298 VRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKW 357
L+ D+ F R + + + ++ W
Sbjct: 148 -HLWLEVKGVDLGDFPVMTFAEAERRYGSDKP----------------DLRDESKWAPLW 190
Query: 358 GCDL---QSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGE 414
D + + E LT PK++ A ++ + A DM++ E
Sbjct: 191 VIDFPMFEDDGEGGLTAMHH------PFTSPKDMTAAELKAAPENAVANAYDMVING-YE 243
Query: 415 LIGGSQREERLEYLEGRLDELKLN----RDSYWWYLDLRHYGSVPHAGFGLGFERLVQFA 470
+ GGS R + + L +N R+ + + LD YG+ PHAG G +RL
Sbjct: 244 VGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLL 303
Query: 471 TGVENIRDAIPFPRTPGS 488
TG +NIRD I FP+T +
Sbjct: 304 TGTDNIRDVIAFPKTTAA 321
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 182 bits (463), Expect = 5e-54
Identities = 106/375 (28%), Positives = 164/375 (43%), Gaps = 44/375 (11%)
Query: 117 PSYPIQKKRVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIIT 176
P P K + + + R A+ ++R+++ A FF ENGFI I +P I
Sbjct: 3 PLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKII 62
Query: 177 ASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQL-N 235
A+ EG E F +FE+ AFL S QL
Sbjct: 63 ATATEGGTELFP------------------------------MKYFEEDAFLAESPQLYK 92
Query: 236 AETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSC 295
A+ L VY P FRAE NT+RHL E W I+ E+AF + D ++L+
Sbjct: 93 EIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE---DEEEVMSFLERLVA 149
Query: 296 MQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLV 355
+ Y+ ++ +++D N +E+ + F ++SY A+E+L K+ +
Sbjct: 150 HAINYVREHNAKELDILNFELEEPKLP---------FPRVSYDKALEILGDLGKEIPWGE 200
Query: 356 KWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGEL 415
+ + +Y+ E + YP E K FY+ + D+ + L R E+
Sbjct: 201 DIDTEGERLLGKYMMEN-ENAPLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGVEI 259
Query: 416 IGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVEN 475
G QRE R + L ++ E LN +S+ +YL YG PH GFGLG ERL++ + N
Sbjct: 260 SSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPN 319
Query: 476 IRDAIPFPRTPGSVE 490
IR+ I FPR +
Sbjct: 320 IREVILFPRDRRRLT 334
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 178 bits (452), Expect = 3e-52
Identities = 59/356 (16%), Positives = 112/356 (31%), Gaps = 42/356 (11%)
Query: 140 RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREA 199
+ VR+ + A +F GF+ + +P++ + F
Sbjct: 15 ANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHH-------- 66
Query: 200 AESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSN 259
+ + +L ++ +L +
Sbjct: 67 --------------------NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI 106
Query: 260 TSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDM-DFFNTWIEK 318
+ RH EF M+E +A+AD D + + + + + E + DF + +
Sbjct: 107 SVRHNPEFTMMELYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKL 166
Query: 319 GIIDRLSTVA-ERDFVQLSYTDAIELLIKAKKKFEFLVKWGCD-LQSEHERYLTEEAFGG 376
+ + + E D L DA + L + WG + +E + E
Sbjct: 167 TMREAIKKYRPETDMADLDNFDAAKALAE-SIGITVEKSWGLGRIVTEIFDEVAEAHL-I 224
Query: 377 CPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELK 436
P +++YP E+ R + + + + E+ G E R E
Sbjct: 225 QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGG-REIGNGFSELNDAEDQAERFQEQV 283
Query: 437 LNRDS--------YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPR 484
+ + Y+ YG P AG G+G +R++ T IRD I FP
Sbjct: 284 NAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPA 339
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 169 bits (430), Expect = 6e-49
Identities = 70/383 (18%), Positives = 121/383 (31%), Gaps = 67/383 (17%)
Query: 117 PSYPIQKK-------RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIW 169
P +P+ S E +L R R+R+ + A F GF+
Sbjct: 2 PPFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQ 61
Query: 170 ISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229
+ +P +T S EGA + + L
Sbjct: 62 VETPFLTKSTPEGARDFLV----------------------------PYRHEPGLFYALP 93
Query: 230 VSGQLNAETYATA-LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACATA 288
S QL + A L + FR E+ +F ++ E++F +++D +
Sbjct: 94 QSPQLFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMSFVEVEDVLELNER 152
Query: 289 YLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAK 348
+ V + + F + Y L +
Sbjct: 153 LMA-----HVFREALGVELPLPFPRLSY--------------EEAMERYGSDKPDLRREG 193
Query: 349 KKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDML 408
+F ++V + E E T S +P++ + + D GR A L
Sbjct: 194 FRFLWVVDFPLLEWDEEEEAWTYM----HHPFTSPHPED---LPLLEKDPGRVRALAYDL 246
Query: 409 VPRIGELIGGSQREERLEYLEGRLDELKLNRDS----YWWYLDLRHYGSVPHAGFGLGFE 464
V E+ GGS R L + + + ++L+ YG+ PH G G +
Sbjct: 247 VLNGVEVGGGSIRIHDPRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLD 306
Query: 465 RLVQFATGVENIRDAIPFPRTPG 487
RL+ TG +IR+ I FP+
Sbjct: 307 RLLALMTGSPSIREVIAFPKNKE 329
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 61.0 bits (148), Expect = 2e-12
Identities = 12/95 (12%), Positives = 35/95 (36%), Gaps = 11/95 (11%)
Query: 26 DRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGAS 85
VG + + G++ R + F+ + D S + + +
Sbjct: 10 AHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPES-----------A 58
Query: 86 IWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120
+ ++G VV + + +E++ ++ ++ + P
Sbjct: 59 LRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTP 93
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 56.6 bits (136), Expect = 9e-11
Identities = 15/89 (16%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
G + VAGWV ++ + F+ + D + + + + + +
Sbjct: 15 NGQKVKVAGWVWEVKDLGGIKFLWIRDRDGIVQI-TAPKKKVDPELFKLIPKLRSEDVVA 73
Query: 88 IQGNVVPSQGSKQKVELKVNKIVLVGKSD 116
++G V + +K E+ KIV++ +++
Sbjct: 74 VEGVVNFTPKAKLGFEILPEKIVVLNRAE 102
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 52.8 bits (126), Expect = 4e-09
Identities = 16/117 (13%), Positives = 43/117 (36%), Gaps = 13/117 (11%)
Query: 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSS-VTFIEVNDGSCLSNMQCVMTS 67
+K++K VD+ + + ++ V R Q + + F+ + + L
Sbjct: 21 QKRVKFVDLDEAKDSDKE-----VLFRARVHNTRQQGATLAFLTLRQQASLIQGLVKANK 75
Query: 68 DAEGYDQ--VKSGLITTGASIWIQGNVVPS-----QGSKQKVELKVNKIVLVGKSDP 117
+ +G + + + ++G V + Q +E+ + KI + ++
Sbjct: 76 EGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 41.2 bits (96), Expect = 2e-05
Identities = 14/93 (15%), Positives = 35/93 (37%), Gaps = 9/93 (9%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG +V+ GWV R + F+++ D L + + + +
Sbjct: 15 VGEEVVLEGWVNRRRDLGGLIFLDLRDREGLVQLVA----HPASPAYATAERVRPEWVVR 70
Query: 88 IQGNVVPSQGSKQK-----VELKVNKIVLVGKS 115
+G V + VE++++ + ++ ++
Sbjct: 71 AKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 40.0 bits (93), Expect = 6e-05
Identities = 15/96 (15%), Positives = 34/96 (35%), Gaps = 10/96 (10%)
Query: 28 VGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIW 87
VG + + GWV R S+ FI++ D + + + + I
Sbjct: 14 VGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRA---DALKLASELRNEFCIQ 70
Query: 88 IQGNVVPSQGSKQ-------KVELKVNKIVLVGKSD 116
+ G V ++E+ + + ++ ++D
Sbjct: 71 VTGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Score = 37.3 bits (85), Expect = 0.003
Identities = 46/339 (13%), Positives = 88/339 (25%), Gaps = 53/339 (15%)
Query: 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESP 203
+ + G+ I PI+ + + E +
Sbjct: 12 LPGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTP-----------LFKRAIGEVTDVV 60
Query: 204 VDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRH 263
+ +D D E A +G + Y ++ GP FR E R+
Sbjct: 61 EKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE-QRLWYIGPMFRHERPQKGRY 119
Query: 264 ---------LAEFWMIEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNT 314
+ + + L A + + + +
Sbjct: 120 RQFHQLGCEVFGLQGPDIDAELIMLTARWWRALGISEHVTLELNSIGSLEARANYRDALV 179
Query: 315 WIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEAF 374
+ ++L D + YT+ + +L + + L+ L + E
Sbjct: 180 AFLEQHKEKLD----EDCKRRMYTNPLRVLDSKNPEVQALLNDAPALGDYLDEESREHFA 235
Query: 375 GGCPVIVSDYPKEIKAFYMRQNDD---GRTVAAMDMLVPRIGELIGGSQREERLEYLEGR 431
G C ++ S + + D + + G + G GR
Sbjct: 236 GLCKLLESAGIAYTVNQRLVRGLDYYNRTVFEWVTNSLGSQGTVCAG-----------GR 284
Query: 432 LDELKLNRDSYWWYLDLRHYG--SVPHAGFGLGFERLVQ 468
D L + G + P GF +G ERLV
Sbjct: 285 YDGL------------VEQLGGRATPAVGFAMGLERLVL 311
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 491 | |||
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.84 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.83 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.82 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.8 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.77 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.73 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 99.66 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 98.73 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 98.49 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 98.48 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 98.45 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 98.17 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 97.79 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.65 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.6 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.45 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 97.21 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.1 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 96.89 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 96.12 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 96.02 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 95.45 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 95.06 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 95.03 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 93.22 | |
| d2pi2e1 | 115 | Replication protein A 14 KDa (RPA14) subunit {Huma | 92.66 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 88.25 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 83.49 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 83.24 | |
| d1ltla_ | 239 | DNA replication initiator (cdc21/cdc54) N-terminal | 80.18 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-78 Score=622.65 Aligned_cols=325 Identities=25% Similarity=0.406 Sum_probs=270.0
Q ss_pred ChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCC
Q 011197 127 SREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDA 206 (491)
Q Consensus 127 ~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~ 206 (491)
+.|...++||||+|++.++++|++||+|++++|+||.++||+||+||+|++++|||++++|.+
T Consensus 23 ~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~eg~~~~f~~----------------- 85 (353)
T d1eova2 23 NLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEV----------------- 85 (353)
T ss_dssp CHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEE-----------------
T ss_pred CHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcchhccccc-----------------
Confidence 456656999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCcCccccccCcccccccchhhHH-HHHhccCCceEEEccccccCCCCCCcccccccceeeEeccCC-HHHHHH
Q 011197 207 IPKTKDGLIDWSQDFFEKPAFLTVSGQLNA-ETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LKDDMA 284 (491)
Q Consensus 207 ~~~~~~~~~~~~~~~f~~~~~L~~Spql~l-ql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~~~lm~ 284 (491)
.|++.++||++|||+|| +|+++|++||||||||||||++++.||||||||||||++|.| ++++|+
T Consensus 86 -------------~~~~~~~yL~~Spel~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~ 152 (353)
T d1eova2 86 -------------TYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLD 152 (353)
T ss_dssp -------------EETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHH
T ss_pred -------------eeeCCcceeccchhhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHH
Confidence 34577889999999999 589999999999999999999988899999999999999997 899999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchH
Q 011197 285 CATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSE 364 (491)
Q Consensus 285 ~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~ 364 (491)
++|+++++ ++..+..++...++........ .........++.++++.||+++|++.+........++......
T Consensus 153 ~~e~l~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ri~~~ea~~~l~~~~~~~~~~~~~~~~~~~~ 225 (353)
T d1eova2 153 TLSELFVF----IFSELPKRFAHEIELVRKQYPV---EEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKF 225 (353)
T ss_dssp HHHHHHHH----HHHHHHHHCHHHHHHHHHHSCC---CCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHH
T ss_pred HHHHHHhh----hccccchhhhhhhhhhcccCcc---ceeeccCCCceeeeehHhhHHHHHHHhhhcccccccchhhHHH
Confidence 99999999 8877766654444333221110 0011123457889999999999988765432222222222223
Q ss_pred HhhhhccccccCccEEEEeCCCCCcccccccC-CCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCccc--
Q 011197 365 HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQN-DDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDS-- 441 (491)
Q Consensus 365 ~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~-~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~-- 441 (491)
+.+++.+.+ ...++||+|||.+++|||+..+ .++.+++|||||++|+ ||+|||+|++++++|++++++.|++++.
T Consensus 226 l~~~i~~~~-~~~~~~i~~~P~~~~p~~~~~~~~~~~~a~rfeL~~~G~-El~nG~~e~~d~~~~~~r~~~~~~~~~~~~ 303 (353)
T d1eova2 226 LGKLVRDKY-DTDFYILDKFPLEIRPFYTMPDPANPKYSNSYDFFMRGE-EILSGAQRIHDHALLQERMKAHGLSPEDPG 303 (353)
T ss_dssp HHHHHHHHS-CCSEEEEECCBGGGSCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCTTSTT
T ss_pred HHHHHHhhc-cCCcccccCCcHHHhhhhhCCChhhhhhhhceeeeeece-EEcceecccCCHHHHHHHHHHcCCChhhhH
Confidence 334444433 3367799999999999997655 4556899999999995 9999999999999999999999988764
Q ss_pred HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 442 YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 442 ~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
++|||+|++||+|||||||||||||+|++||.+|||||++|||++++|.
T Consensus 304 ~~~yl~al~~G~PP~~G~glGiDRL~m~l~~~~~Irdvi~FPr~~~~~~ 352 (353)
T d1eova2 304 LKDYCDGFSYGCPPHAGGGIGLERVVMFYLDLKNIRRASLFPRDPKRLR 352 (353)
T ss_dssp THHHHHHHTTCCCCEEEEEEEHHHHHHHHTTCSSGGGGCSSCCBTTBCC
T ss_pred HHHHHHHhHcCCCCCceeeeHHHHHHHHHhCCCcHHheeCCCCCCCCCC
Confidence 7999999999999999999999999999999999999999999999984
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=3.2e-74 Score=585.33 Aligned_cols=323 Identities=33% Similarity=0.567 Sum_probs=274.2
Q ss_pred CCCCcc---ccChhhhccCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCC
Q 011197 119 YPIQKK---RVSREFLRTKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPS 195 (491)
Q Consensus 119 ~P~~~~---~~~~~~~r~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~ 195 (491)
+|++.+ +.+.+...++||||+|++.++++|++||++++++|+||.++||+||+||+|++++++|++++|.+
T Consensus 2 lp~~~~~~~~~~~~~r~~~R~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~------ 75 (335)
T d1b8aa2 2 LPLDPTGKVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM------ 75 (335)
T ss_dssp CSSCTTSSSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEE------
T ss_pred CCCCcCCCCCCCHHHHhhchhheeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhccc------
Confidence 455433 23455555899999999999999999999999999999999999999999999999999999976
Q ss_pred cccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEe
Q 011197 196 SREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPEL 274 (491)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~ 274 (491)
+++++++||++|||+||+ ++++|++||||||||||||++++.||++||||+|+|+
T Consensus 76 ------------------------~~~~~~~yL~~SpE~~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~ 131 (335)
T d1b8aa2 76 ------------------------KYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEM 131 (335)
T ss_dssp ------------------------EETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEE
T ss_pred ------------------------cccccccccccChHHHHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHH
Confidence 334778899999999995 8999999999999999999998889999999998888
Q ss_pred ccC-CHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhcccccc
Q 011197 275 AFA-DLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEF 353 (491)
Q Consensus 275 ~~~-~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~ 353 (491)
++. ++.++|+++++++.. +.+.+...+..++++.+.. ....+.+|++++|++|++++++.+.++
T Consensus 132 ~~~~~~~~l~~~~e~~~~~----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~r~~~~e~~~~l~~~~~~~-- 196 (335)
T d1b8aa2 132 AFIEDEEEVMSFLERLVAH----AINYVREHNAKELDILNFE---------LEEPKLPFPRVSYDKALEILGDLGKEI-- 196 (335)
T ss_dssp ESCSSHHHHHHHHHHHHHH----HHHHHHHHCHHHHHHTTCC---------CCCCCSSCCEEEHHHHHHHHHHTTCCC--
T ss_pred HHHHhhhhHHHHHHHHHHH----HHHHHhhcccchhhhhccc---------cccCCCCcccccHHHHHHHHHhhcccc--
Confidence 875 899999999999999 8887766554343332210 112467899999999999998877653
Q ss_pred ccccccccchH----HhhhhccccccCccEEEEeCCCCCcccccccCCC-CCceEEEEEEeCCeeEeechhhhcccHHHH
Q 011197 354 LVKWGCDLQSE----HERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDD-GRTVAAMDMLVPRIGELIGGSQREERLEYL 428 (491)
Q Consensus 354 ~~~~g~~l~~~----~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~-~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~ 428 (491)
.++.+++.. ++.++.+.... .|+||+|||.+++|||+..+++ +.+++|||||++|+ ||+||++|++++++|
T Consensus 197 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~fi~~~P~~~~pl~~~~~~~~~~~a~rfel~~~G~-El~nG~~e~~~~~~~ 272 (335)
T d1b8aa2 197 --PWGEDIDTEGERLLGKYMMENENA-PLYFLYQYPSEAKPFYIMKYDNKPEICRAFDLEYRGV-EISSGGQREHRHDIL 272 (335)
T ss_dssp --CTTSCCCHHHHHHHHHHHHHHHCC-SEEEEESCBGGGSCTTBCEETTEEEEESEEEEEETTE-EEEEEEEBCCCHHHH
T ss_pred --Ccccccccccccceeeeeeccccc-ccceeecChHHhhhccccccCCCcHHHHhhccccCce-eeecccchhcCHHHH
Confidence 344455444 33444443333 6789999999999999866543 45889999999997 999999999999999
Q ss_pred HHHHHHcCCCcccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCCC
Q 011197 429 EGRLDELKLNRDSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSVE 490 (491)
Q Consensus 429 ~~~~~~~g~~~~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~~ 490 (491)
.+++++.|++++.++|||+|++||+|||||||||||||+|++||.+|||||++|||++++|.
T Consensus 273 ~~r~~~~~~~~e~~e~yl~al~~G~Pp~~G~glGiDRLvm~l~~~~~IrdVi~FPr~~~~~~ 334 (335)
T d1b8aa2 273 VEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLT 334 (335)
T ss_dssp HHHHHHTTCCGGGGHHHHHTTSBCCCCEEEEEEEHHHHHHHHTTCSCGGGGSSSCCBTTBCC
T ss_pred HHHHHHcCCCHHHHHHHHHHhhcCCCCCceeeeHHHHHHHHHhCCCcHHheEcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999984
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=5.6e-74 Score=584.97 Aligned_cols=310 Identities=20% Similarity=0.287 Sum_probs=250.0
Q ss_pred hhhccCccccC-CChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCC
Q 011197 129 EFLRTKAHLRP-RTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAI 207 (491)
Q Consensus 129 ~~~r~~~~l~~-R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~ 207 (491)
+...+|||||+ |++.++++|++||++++++|+||.++||+||+||+|++++|+|++++|.+.
T Consensus 3 ~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~----------------- 65 (342)
T d1e1oa2 3 EVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH----------------- 65 (342)
T ss_dssp THHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-----------------
T ss_pred HhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeec-----------------
Confidence 33448999998 889999999999999999999999999999999999999999999999652
Q ss_pred CCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEeccCCHHHHHHHH
Q 011197 208 PKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 208 ~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
.+||+.++||+||||+||| ++++|++||||||||||+|++ ++||+|||||||||++|+|++|+|+++
T Consensus 66 -----------~~~~~~~~yL~~Spql~~k~~l~~g~~~vf~i~p~FR~E~~-~~rHl~EFtmlE~e~a~~~~~d~m~~~ 133 (342)
T d1e1oa2 66 -----------HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYADYHDLIELT 133 (342)
T ss_dssp -----------ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECCCCC-CC-CCSEEEEEEEEEESCCHHHHHHHH
T ss_pred -----------ccCCCcccccchhhHHHHHHHhhhcccceeeeccccccccc-cccchHHHHHHHHHHHhhhhhhHHHhh
Confidence 2678999999999999997 889999999999999999988 679999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHH-------------------HHh
Q 011197 287 TAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELL-------------------IKA 347 (491)
Q Consensus 287 e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l-------------------~~~ 347 (491)
|+|+++ ++..+.+.+........ ...+.+++++++.+|++.+ +..
T Consensus 134 e~l~~~----i~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (342)
T d1e1oa2 134 ESLFRT----LAQEVLGTTKVTYGEHV------------FDFGKPFEKLTMREAIKKYRPETDMADLDNFDAAKALAESI 197 (342)
T ss_dssp HHHHHH----HHHHHHSSSEEEETTEE------------EETTSCCEEEEHHHHHHHHSTTCCGGGGGSHHHHHHHHHHT
T ss_pred hHHHHH----HHHHHhCcchhhccchh------------cccCCchhhhhHHHHHHHHhccccHhhhhhhHHHHHHHHHc
Confidence 999999 88888766542211100 0122344455555444322 222
Q ss_pred ccccccccccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHH
Q 011197 348 KKKFEFLVKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEY 427 (491)
Q Consensus 348 ~~~~~~~~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~ 427 (491)
+...+....++..+ .+....+.+..+. +|+||+|||..++|||+..++++.++++||||++|+ ||+|||+|++++++
T Consensus 198 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~p~fi~~~P~~~~~f~~~~~~~~~~~~~fdl~~~g~-El~~G~~r~~d~~~ 274 (342)
T d1e1oa2 198 GITVEKSWGLGRIV-TEIFDEVAEAHLI-QPTFITEYPAEVSPLARRNDVNPEITDRFEFFIGGR-EIGNGFSELNDAED 274 (342)
T ss_dssp TCCCCTTCCHHHHH-HHHHHHHTGGGCC-SCEEEECCBGGGCTTBCBCSSCTTBBSEEEEEETTE-EEEEEEEBCCCHHH
T ss_pred CCCcccccchhHHH-HHHHHHhhHhhcc-CCCcCCCCccccChhhccccccchhhhhhhcccCCE-eecCCccccCCHHH
Confidence 33322211222223 2334444555565 899999999999999998777778999999999995 99999999999999
Q ss_pred HHHHHHH------cCCCccc--HHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCC
Q 011197 428 LEGRLDE------LKLNRDS--YWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTP 486 (491)
Q Consensus 428 ~~~~~~~------~g~~~~~--~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~ 486 (491)
+.+++++ .+.++.. ++|||+|++||+|||||||||||||+|++||.+|||||+||||..
T Consensus 275 ~~~r~~~~~~~~~~~~~~~~~~d~~yl~a~~~G~pPh~G~glG~dRlvm~l~g~~nIrdvi~FPr~r 341 (342)
T d1e1oa2 275 QAERFQEQVNAKAAGDDEAMFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILFPAMR 341 (342)
T ss_dssp HHHHHHHHHHHHHTTCTTCCCCCHHHHHHHHHHCCSEEEEEEEHHHHHHHHHTCSSGGGTSSSCCCC
T ss_pred HHHHHHHHHHHHhcCcchhhhhhHHHHHHhhCCCCCccchhHHHHHHHHHHhCCCcHHHhccCCCCC
Confidence 9998754 2333332 389999999999999999999999999999999999999999964
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=1.7e-73 Score=572.52 Aligned_cols=299 Identities=29% Similarity=0.454 Sum_probs=223.0
Q ss_pred CccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCC
Q 011197 134 KAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG 213 (491)
Q Consensus 134 ~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~ 213 (491)
|||||+|++..+++|++||+|++++|+||.++||+||+||+|++++++|++++|.+
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~------------------------ 56 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGV------------------------ 56 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC----------------------------------------
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCCceECC------------------------
Confidence 68999999999999999999999999999999999999999999999998888864
Q ss_pred CcCccccccCcccccccchhhHHHHHhccCCceEEEccccccCCCCCCcccccccceeeEeccC-CHHHHHHHHHHHHHH
Q 011197 214 LIDWSQDFFEKPAFLTVSGQLNAETYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA-DLKDDMACATAYLQL 292 (491)
Q Consensus 214 ~~~~~~~~f~~~~~L~~Spql~lql~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~-~~~~lm~~~e~li~~ 292 (491)
+|+++++||++|||+|||++++|++||||||||||+|++.++||+|||||||||++|. +++++|+++|++++.
T Consensus 57 ------~~~~~~~~L~~Spel~k~ll~~g~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~ 130 (304)
T d1n9wa2 57 ------DYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAE 130 (304)
T ss_dssp ------------------CHHHHHHHHHHHSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHH
T ss_pred ------cccccchhccccHHHHHHHhhcccccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999987889999999999999987 589999999999999
Q ss_pred HHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhc--
Q 011197 293 YSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLT-- 370 (491)
Q Consensus 293 ~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~-- 370 (491)
++..+.+.+...+..++.. ......+++++++.||+++++..- . ..++.++....++.|.
T Consensus 131 ----~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~e~~~~l~~~~-~----~~~~~~~~~~~~~~l~~~ 192 (304)
T d1n9wa2 131 ----MLEEALNTAGDEIRLLGAT---------WPSFPQDIPRLTHAEAKRILKEEL-G----YPVGQDLSEEAERLLGEY 192 (304)
T ss_dssp ----HHHHHHHHSHHHHHHTTCC---------CCCCSSSCCEEEHHHHHHHHHHTS-C----CCCCSSCCHHHHHHHHHH
T ss_pred ----HHHHHHhhhhhhhhhhccc---------eecccchhhhhhHHHHHHHHHHHh-C----CCcCCCccHHHHHHHHHH
Confidence 8888877665444333221 112445788999999999887641 1 2344556665555443
Q ss_pred --cccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHH
Q 011197 371 --EEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDL 448 (491)
Q Consensus 371 --~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~ 448 (491)
+.... .|+||+|||++++|||+..+ ++.+++|||||++|+ ||+|||+|++|+++|.++++++|++++.++|||+|
T Consensus 193 ~~~~~~~-~~~fi~~~P~~~~p~~~~~~-~~~~a~rfel~~~G~-El~nG~~e~~d~~~l~~r~~~~~~~~e~~~~yl~a 269 (304)
T d1n9wa2 193 AKERWGS-DWLFVTRYPRSVRPFYTYPE-EDGTTRSFDLLFRGL-EITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEV 269 (304)
T ss_dssp HHHHTCC-SEEEEECCBGGGSCTTBCBC-TTSBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHGG
T ss_pred HHhhcCC-ceEEEeCChhhhCchhhccc-ccceeehhccccCcE-EEeccccccCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 33333 79999999999999997544 445899999999997 99999999999999999999999999999999999
Q ss_pred HhcCCCCccceeccHHHHHHHHcCCCCcccccccC
Q 011197 449 RHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFP 483 (491)
Q Consensus 449 ~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FP 483 (491)
+++|+|||||||||+|||+|++||.+|||||++||
T Consensus 270 l~~G~PP~~G~glGiDRL~m~l~g~~~Irdv~~FP 304 (304)
T d1n9wa2 270 FKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 304 (304)
T ss_dssp GGBCCCSEEEEEEEHHHHHHHHTTCSSGGGGCSCC
T ss_pred HhcCCCCCceeehHHHHHHHHHhCCCcHHheecCC
Confidence 99999999999999999999999999999999999
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=2.7e-72 Score=574.50 Aligned_cols=312 Identities=22% Similarity=0.329 Sum_probs=255.2
Q ss_pred CCCCCccccC------hhhhc-cCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeee
Q 011197 118 SYPIQKKRVS------REFLR-TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVT 190 (491)
Q Consensus 118 ~~P~~~~~~~------~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt 190 (491)
++|++.+.++ .+.+| ++||||+|++.++++||+||++++++|+||.++||+||+||+|++++|+|++..|.++
T Consensus 3 ~~p~~~~~~~~~~~~~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~ 82 (356)
T d1l0wa3 3 PFPVDAGWRGEEEKEASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPY 82 (356)
T ss_dssp SSCCSSGGGTCCCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEEC
T ss_pred CcccCcccccccccccCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCcccccchhhh
Confidence 4888764332 22345 9999999999999999999999999999999999999999999999999999887541
Q ss_pred ecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccc
Q 011197 191 TLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWM 269 (491)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtm 269 (491)
.+|++.++||++||||||| ++++|++|||+||||||||+++ +||+|||||
T Consensus 83 ----------------------------~~~~~~~~yL~~Spel~lk~ll~~g~~~Vf~i~~~FRaE~~~-t~H~~EFtm 133 (356)
T d1l0wa3 83 ----------------------------RHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDEDLR-ADRQPDFTQ 133 (356)
T ss_dssp ----------------------------TTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCCCC-SSCCSEEEE
T ss_pred ----------------------------hcccccccCCCcChhHHHHHhhhcccCcEEEEeccccccccC-CcchhhhhH
Confidence 2577899999999999996 7899999999999999999995 689999999
Q ss_pred eeeEeccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhcc
Q 011197 270 IEPELAFADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKK 349 (491)
Q Consensus 270 lE~e~~~~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~ 349 (491)
||||++|+|++++|+++|+|+++ +++.+.+. ....+|++++|.+|+..+.....
T Consensus 134 LE~e~~~~~~~~~m~~~E~li~~----v~~~~~~~----------------------~~~~~f~r~~~~~a~~~~~~~~~ 187 (356)
T d1l0wa3 134 LDLEMSFVEVEDVLELNERLMAH----VFREALGV----------------------ELPLPFPRLSYEEAMERYGSDKP 187 (356)
T ss_dssp EEEEEESCCHHHHHHHHHHHHHH----HHHHHTCC----------------------CCCSSCCEEEHHHHHHHHSSSSC
T ss_pred HHHhhhHHHHHHHHHHHHHHHHH----HHHHHhCC----------------------CCCCCCCcchHHhhHHHHhcCcH
Confidence 99999999999999999999999 88776542 13458999999999876543211
Q ss_pred ccc---cccccccccch--HHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhccc
Q 011197 350 KFE---FLVKWGCDLQS--EHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREER 424 (491)
Q Consensus 350 ~~~---~~~~~g~~l~~--~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~ 424 (491)
... ....|+.++.. ..+......+ ..|+|+++||...+++++ +++..++++||||++|+ ||+|||+|++|
T Consensus 188 ~l~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~f~~~~p~~~~~~~~--~~~~~~a~~FdL~~~G~-ElanG~~r~~d 262 (356)
T d1l0wa3 188 DLRREGFRFLWVVDFPLLEWDEEEEAWTY--MHHPFTSPHPEDLPLLEK--DPGRVRALAYDLVLNGV-EVGGGSIRIHD 262 (356)
T ss_dssp CCSCCSCCEEEEECCBSBCCCTTTSCCCB--SSCTTBCBCSTTTTHHHH--CGGGCBBSEEEEEETTE-EEEEEEEBCCC
T ss_pred hHHHHhhhhhhccccccccccchhcceee--eeCCcccCChhhhchhhc--CCCcceeeeeecccCCE-EeeccEEEeCc
Confidence 110 01122222211 1111101111 268899999998876553 33445788999999997 99999999999
Q ss_pred HHHHHHHHHHcCCCcc----cHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 425 LEYLEGRLDELKLNRD----SYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 425 ~~~~~~~~~~~g~~~~----~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
+++|.+++++.+++++ .++|||+|++||+|||||||||+|||+|++||.+|||||++|||+++++
T Consensus 263 ~~~~~~r~~~~~~~~~~~~~~~~~yl~a~~~G~PP~~G~glGldRLlm~l~g~~~Irdvi~FPR~~~r~ 331 (356)
T d1l0wa3 263 PRLQARVFRLLGIGEEEQREKFGFFLEALEYGAPPHGGIAWGLDRLLALMTGSPSIREVIAFPKNKEGK 331 (356)
T ss_dssp HHHHHHHHHHHTCCTTTHHHHTHHHHHHTTBTCCCEEEEEEEHHHHHHHHHTCSSGGGGSSSCCCTTSC
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHhhCCCCCcceEEEcHHHHHHHHcCCCcHHheecCCCCCCCC
Confidence 9999999999888764 3799999999999999999999999999999999999999999999986
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-72 Score=572.78 Aligned_cols=311 Identities=23% Similarity=0.323 Sum_probs=255.5
Q ss_pred CCCCccccChhhhc-cCccccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcc
Q 011197 119 YPIQKKRVSREFLR-TKAHLRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSR 197 (491)
Q Consensus 119 ~P~~~~~~~~~~~r-~~~~l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~ 197 (491)
+|++.+..+.+..| ++||||+|++..+++|++||++++++|+||.++||+||+||+|++++|+|++..|..+
T Consensus 2 lP~~~~~~~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~------- 74 (346)
T d1c0aa3 2 LPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPS------- 74 (346)
T ss_dssp CSSCTTSCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEEC-------
T ss_pred CCCCCCCCCCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCcccccccccc-------
Confidence 67776655555555 9999999999999999999999999999999999999999999999999998877531
Q ss_pred cccCCCCCCCCCCCCCCcCccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCCCCCcccccccceeeEecc
Q 011197 198 EAAESPVDAIPKTKDGLIDWSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAF 276 (491)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~ 276 (491)
..+++.++||++||||||| ++++|++||||||||||||++ +++|+|||||||||++|
T Consensus 75 ---------------------~~~~~~~~~L~~Spel~lk~ll~~g~~~Vf~i~~~FR~E~~-~~~H~~EFtmLE~e~a~ 132 (346)
T d1c0aa3 75 ---------------------RVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDL-RADRQPEFTQIDVETSF 132 (346)
T ss_dssp ---------------------SSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECCCCC-BTTBCSEEEEEEEEEES
T ss_pred ---------------------ccCCCccccCCcCHHHHHHHHhhcCCCceEEEeeecccccc-CchhhhHhhhhcccccc
Confidence 1455788899999999996 788999999999999999999 56777999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccc--
Q 011197 277 ADLKDDMACATAYLQLYSCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFL-- 354 (491)
Q Consensus 277 ~~~~~lm~~~e~li~~~~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~-- 354 (491)
+|++++|+++|+|+++ ++..+.+.. -.+|+++++.||+..+......+...
T Consensus 133 ~~~~~~m~~~E~li~~----l~~~~~~~~-----------------------~~~~~~~~~~e~~~~~~~~~~~l~~~~~ 185 (346)
T d1c0aa3 133 MTAPQVREVMEALVRH----LWLEVKGVD-----------------------LGDFPVMTFAEAERRYGSDKPDLRDESK 185 (346)
T ss_dssp CCHHHHHHHHHHHHHH----HHHHHHSCC-----------------------CCSCCEEEHHHHHHHHSCSSCCTTCSSC
T ss_pred ccHhHhHHHHHHHHHH----HHHHHhCCc-----------------------CCccceeeHHHHHHHhcccccchhhHhh
Confidence 9999999999999999 887764321 13678899999976543221111111
Q ss_pred --cccccccchHHhhhhccccccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHH
Q 011197 355 --VKWGCDLQSEHERYLTEEAFGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRL 432 (491)
Q Consensus 355 --~~~g~~l~~~~e~~l~~~~~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~ 432 (491)
..|+.++... +. ..+..+. .+++++++|...+|+++..++++.++++||||++|+ ||+|||+|+++++++++++
T Consensus 186 ~~~~~~~~~~~~-~~-~~~~~l~-~~~~~~~~p~~~~~~~~~~~~~~~~a~~fdl~~~G~-El~nG~~rl~d~~~~~~r~ 261 (346)
T d1c0aa3 186 WAPLWVIDFPMF-ED-DGEGGLT-AMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGY-EVGGGSVRIHNGDMQQTVF 261 (346)
T ss_dssp CCEEEEECCBSE-EE-CSSSCEE-ESSCTTBCBSSCCHHHHHHSCTTCBBSEEEEEETTE-EEEEEEEBCCCHHHHHHHH
T ss_pred hhhhcccccccc-ch-hccccee-eeEeeccccchhhHHHhccCCccccccccccCcCCE-EEechhhhhchHHHHHHHH
Confidence 1111121110 00 0111111 455677889999999987777788999999999996 9999999999999999999
Q ss_pred HHcCCCc----ccHHHHHHHHhcCCCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 433 DELKLNR----DSYWWYLDLRHYGSVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 433 ~~~g~~~----~~~~~yl~~~~~G~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
++.|+++ +.++|||+|++||+|||||||||+|||+|++||.+|||||++|||+++..
T Consensus 262 ~~~~~~~~~~~e~~~~ylda~~~G~PP~~G~glGldRL~m~l~g~~~Irdvi~FPRt~~~~ 322 (346)
T d1c0aa3 262 GILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAA 322 (346)
T ss_dssp HHTTCCHHHHHHHHHHHHHHTTTTCCCEEEEEEEHHHHHHHHHTCSCGGGGSSSCCCTTSC
T ss_pred HHhCccccchHHHHHHHHHHHHCCCCCceeEeEHHHHHHHHHcCCCcHHheecCCCCCCCC
Confidence 9999987 56899999999999999999999999999999999999999999999753
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6e-70 Score=542.06 Aligned_cols=284 Identities=23% Similarity=0.364 Sum_probs=236.4
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 137 LRPRTNTFGAVARVRNALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 137 l~~R~~~~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
||+|++..+++|++||+|++++|+||.++||+||+||+|++........++. +.. ..
T Consensus 3 l~l~~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~-~~~----------------------~~ 59 (293)
T d1nnha_ 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAG-EGM----------------------EP 59 (293)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTC-CCC----------------------CC
T ss_pred ccccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCcccc-Ccc----------------------cc
Confidence 6889999999999999999999999999999999999999754432222221 100 11
Q ss_pred ccccccCcccccccchhhHHH-HHhccCCceEEEccccccCCC--CCCcccccccceeeEeccCCHHHHHHHHHHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNAE-TYATALSNVYTFGPTFRAENS--NTSRHLAEFWMIEPELAFADLKDDMACATAYLQLY 293 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~lq-l~~~g~~rvfeI~~~FR~E~~--~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~ 293 (491)
++.+||++++||++||||||| +|++|++||||||||||||++ +|.||||||||||||++|+|++|+|+++|+++++
T Consensus 60 ~~~~~~~~~~yL~~SPel~lk~lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d~~d~m~~~e~li~~- 138 (293)
T d1nnha_ 60 AEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAKMEDIMRLIERLVYG- 138 (293)
T ss_dssp CEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCCHHHHHHHHHHHHHH-
T ss_pred ccccCCCceeecccChhhhHHHHHHhccccceeechhhhcCcccCCCCccchhhhhhccccccccHHHHHHHHHHHHHH-
Confidence 234789999999999999996 899999999999999999964 4679999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccchHHhhhhcccc
Q 011197 294 SCMQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQSEHERYLTEEA 373 (491)
Q Consensus 294 ~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~ 373 (491)
+++.+.+.+..++. ...+|++++|.||++.+ |.|.... + .
T Consensus 139 ---~~~~~~~~~~~~~~-----------------~~~~~~~~~~~eal~~~-------------g~d~~~~------~-~ 178 (293)
T d1nnha_ 139 ---LFRKAEEWTGREFP-----------------KTKRFEVFEYSEVLEEF-------------GSDEKAS------Q-E 178 (293)
T ss_dssp ---HHHHHHHHHSSCCC-----------------CCSSCEEEEHHHHHHHT-------------SSHHHHH------H-H
T ss_pred ---HHHHHHHHhCcccc-----------------cCCccccccHHhhhccc-------------Ccccccc------c-c
Confidence 88776544333221 23478999999997532 2221111 1 1
Q ss_pred ccCccEEEEeCCCCCcccccccCCCCCceEEEEEEeCCeeEeechhhhcccHHHHHHHHHHcCCCcccHHHHHHHHhcC-
Q 011197 374 FGGCPVIVSDYPKEIKAFYMRQNDDGRTVAAMDMLVPRIGELIGGSQREERLEYLEGRLDELKLNRDSYWWYLDLRHYG- 452 (491)
Q Consensus 374 ~~~~p~~i~~~P~~~~pf~~~~~~~~~~~~~fdl~~~G~gEi~~G~~r~~~~~~~~~~~~~~g~~~~~~~~yl~~~~~G- 452 (491)
+. .|+|++|||. +||++.+++...+.+|+++++|. ||+||++|++|+++|.+++++.|++++.++|||+|++||
T Consensus 179 ~~-~p~~~~~~p~---~f~~~~~~~~~~~~~~~l~~~g~-Elang~~el~d~~~~~~r~~~~gl~~e~~~~yl~a~~~G~ 253 (293)
T d1nnha_ 179 ME-EPFWIINIPR---EFYDREVDGFWRNYDLILPYGYG-EVASGGEREWEYEKIVAKIRKAGLNEDSFRPYLEIAKAGK 253 (293)
T ss_dssp CS-SCEEEECCCC---CTTBCEETTEECEEEEEETTTTE-EEEEEEEBCCCHHHHHHHHHHTTCCGGGGHHHHHHHHTTC
T ss_pred cc-cceeccccch---hhcccccccccccceeEecccCc-ccccccccccCHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Confidence 23 7999999995 68876665555678899999995 999999999999999999999999999999999999999
Q ss_pred CCCccceeccHHHHHHHHcCCCCcccccccCCCCCCC
Q 011197 453 SVPHAGFGLGFERLVQFATGVENIRDAIPFPRTPGSV 489 (491)
Q Consensus 453 ~pp~~G~glGidRL~m~l~g~~~Irdvi~FPr~~~~~ 489 (491)
||||||||||+|||+|+++|.+|||||++|||+||.-
T Consensus 254 mPP~~G~glGiDRL~m~l~g~~~Irdv~~FPR~~g~~ 290 (293)
T d1nnha_ 254 LKPSAGAGIGVERLVRFIVGAKHIAEVQPFPRIPGIP 290 (293)
T ss_dssp CCCEEEEEEEHHHHHHHHHTCSSGGGGCSSCCCTTSC
T ss_pred CCCCCeEeehHHHHHHHHhCCCcHHheecCCCCCCCc
Confidence 8999999999999999999999999999999999863
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.84 E-value=6.5e-21 Score=158.57 Aligned_cols=97 Identities=16% Similarity=0.282 Sum_probs=87.5
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc---chhhhhhcCCCCCcEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE---GYDQVKSGLITTGASI 86 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~---~~~~~~~~~L~~gd~V 86 (491)
++|+|.+|.+. +.|++|+|+|||+++|.+|+++|++|||++| .+|||++++.. .|+.+++ |+.||+|
T Consensus 3 RTh~~~el~~~------~~G~~V~v~Gwv~~~R~~g~i~Fi~LrD~sg--~iQ~v~~~~~~~~~~~~~~~~--l~~es~v 72 (103)
T d1b8aa1 3 RTHYSSEITEE------LNGQKVKVAGWVWEVKDLGGIKFLWIRDRDG--IVQITAPKKKVDPELFKLIPK--LRSEDVV 72 (103)
T ss_dssp CSCCGGGCCGG------GTTCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSCHHHHHHGGG--CCTTCEE
T ss_pred cccChhhCChh------HCCCEEEEEEEEehhccCCCcEEEEEEcCCE--eeeEEEeccccchhhhhHHhh--CCcceEE
Confidence 57899999875 7899999999999999999999999999997 49999987652 3666778 9999999
Q ss_pred EEEEEEEecCCCceeEEEEEeeEEEEccCC
Q 011197 87 WIQGNVVPSQGSKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 87 ~V~G~v~~~~~~~~~~el~~~~i~ils~~~ 116 (491)
.|+|++.+++.+++++||++++++|||+|.
T Consensus 73 ~V~G~v~~~~~~~~~iEi~v~~i~ils~a~ 102 (103)
T d1b8aa1 73 AVEGVVNFTPKAKLGFEILPEKIVVLNRAE 102 (103)
T ss_dssp EEEEEEEECTTSTTSEEEEEEEEEEEECBC
T ss_pred EEEEEEEECCCCCccEEEEeeEEEEEEecC
Confidence 999999999988888999999999999985
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.83 E-value=2.7e-20 Score=152.03 Aligned_cols=92 Identities=17% Similarity=0.290 Sum_probs=82.3
Q ss_pred ceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEE
Q 011197 11 KLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQG 90 (491)
Q Consensus 11 ~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G 90 (491)
|+.|+||.+ +.|++|+|+|||+++|.+||++|++|||++|. +||++++.. . +..||+|.|+|
T Consensus 2 R~~I~dl~~-------~~g~~V~v~GwV~~~R~~gk~~Fi~LrD~sg~--iQ~v~~~~~-------~--~~~e~~v~v~G 63 (93)
T d1n9wa1 2 RVLVRDLKA-------HVGQEVELLGFLHWRRDLGRIQFLLLRDRSGV--VQVVTGGLK-------L--PLPESALRVRG 63 (93)
T ss_dssp BCCGGGGGG-------CTTSEEEEEEEEEEEEECSSEEEEEEEETTEE--EEEEEESCC-------C--CCTTCEEEEEE
T ss_pred cEEhHHhhh-------cCCCEEEEEEEEEeEEeCCCcEEEEEEcCCcc--ceEEecccc-------c--cccceEEEEEE
Confidence 467889853 68999999999999999999999999999974 999998753 4 88999999999
Q ss_pred EEEecCCCceeEEEEEeeEEEEccCCCCCC
Q 011197 91 NVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (491)
Q Consensus 91 ~v~~~~~~~~~~el~~~~i~ils~~~~~~P 120 (491)
++.+++.+++++||++++++||++|..++|
T Consensus 64 ~v~~~~~~~~~~Ei~v~~i~il~~a~~plP 93 (93)
T d1n9wa1 64 LVVENAKAPGGLEVQAKEVEVLSPALEPTP 93 (93)
T ss_dssp EEEECTTSTTSEEEEEEEEEEEECCCSCCC
T ss_pred EEEECCCCCCCEEEEEeEEEEEecCCCCCC
Confidence 999999888899999999999999986565
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.82 E-value=2.8e-20 Score=154.60 Aligned_cols=97 Identities=19% Similarity=0.355 Sum_probs=86.9
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEE
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWI 88 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V 88 (491)
.++|+|.+|.+. +.|++|+|+|||+++|.+|+++|++|||++|. +|+|++.+.+.|+.+++ |+.||+|.|
T Consensus 2 ~RTh~~geL~~~------~~g~~V~l~GWV~~~R~~g~i~Fi~LRD~~G~--iQ~v~~~~~~~~~~~~~--l~~Es~I~V 71 (104)
T d1l0wa1 2 RRTHYAGSLRET------HVGEEVVLEGWVNRRRDLGGLIFLDLRDREGL--VQLVAHPASPAYATAER--VRPEWVVRA 71 (104)
T ss_dssp CCSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECTTSTTHHHHTT--CCTTCEEEE
T ss_pred ccccccccCChH------HCCCEEEEEEEEEehhcCCCeEEEEEECCCCc--eEEecccchhHHHHHhh--cCcccEEEE
Confidence 467899999864 79999999999999999999999999999974 99999988777888888 999999999
Q ss_pred EEEEEecCC-----CceeEEEEEeeEEEEccC
Q 011197 89 QGNVVPSQG-----SKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 89 ~G~v~~~~~-----~~~~~el~~~~i~ils~~ 115 (491)
+|+|.+++. .+|++||++++++|||+|
T Consensus 72 ~G~V~~r~~~n~~~~tG~iEi~v~~i~iL~~a 103 (104)
T d1l0wa1 72 KGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103 (104)
T ss_dssp EEEEEECSSCCTTSTTTTEEEEEEEEEEEECC
T ss_pred EEEEeeCCccCCCCCCCCEEEEEeEEEEEEcC
Confidence 999987664 246799999999999997
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=9.3e-20 Score=152.16 Aligned_cols=97 Identities=18% Similarity=0.367 Sum_probs=84.2
Q ss_pred cceeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCcc-chhhhhhcCCCCCcEEEE
Q 011197 10 KKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAE-GYDQVKSGLITTGASIWI 88 (491)
Q Consensus 10 ~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~-~~~~~~~~~L~~gd~V~V 88 (491)
++|+|.+|... +.|++|+|+|||+++|.+|+++|++|||++|. +|+|+.++.. .++.++. |+.||+|.|
T Consensus 2 Rth~cgeL~~~------~~g~~V~v~GWv~~~R~~g~i~Fi~LRD~~G~--~Q~v~~~~~~~~~~~~~~--l~~Es~v~V 71 (106)
T d1c0aa1 2 RTEYCGQLRLS------HVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI--VQVFFDPDRADALKLASE--LRNEFCIQV 71 (106)
T ss_dssp CSSCGGGCCGG------GTTCEEEEEEEEEEEEECSSCEEEEEEETTEE--EEEEECGGGHHHHHHHTT--CCTTCEEEE
T ss_pred CceEcccCChH------HCCCEEEEEEEEEEeeeCCCcEEEEEEcCCeE--EeEEecccchhHHHHHHh--hCccceEEE
Confidence 67899999864 79999999999999999999999999999975 9999987643 3455677 999999999
Q ss_pred EEEEEecCCC-------ceeEEEEEeeEEEEccCC
Q 011197 89 QGNVVPSQGS-------KQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 89 ~G~v~~~~~~-------~~~~el~~~~i~ils~~~ 116 (491)
+|+|.+++.+ ++++||++++++|||+|+
T Consensus 72 ~G~V~~r~~~~~n~~~~tg~iEi~v~~i~vl~~ad 106 (106)
T d1c0aa1 72 TGTVRARDEKNINRDMATGEIEVLASSLTIINRAD 106 (106)
T ss_dssp EEEEEECCTTTCCTTSTTTTEEEEEEEEEEEECCC
T ss_pred EeEEeccCccccCCCCCCCcEEEEEeEEEEEeCCC
Confidence 9999987642 357999999999999984
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.77 E-value=4.7e-19 Score=155.55 Aligned_cols=109 Identities=19% Similarity=0.327 Sum_probs=91.2
Q ss_pred CCcccceeeccccCCcccC----CCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCc---cchhh-hhh
Q 011197 6 GEFRKKLKIVDVKGGPNEG----LDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDA---EGYDQ-VKS 77 (491)
Q Consensus 6 ~~~~~~~~i~~l~~~~~~~----~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~---~~~~~-~~~ 77 (491)
.+|+++++++++...|.+. .+..+..|+|+|||.++|.+||++|++|+|.+| +||++++++. ..|+. .+.
T Consensus 27 ~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~Gk~~F~~i~D~~g--~iQi~~~~~~~~~~~~~~~~k~ 104 (143)
T d1e1oa1 27 NDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMGKASFVTLQDVGG--RIQLYVARDSLPEGVYNDQFKK 104 (143)
T ss_dssp CCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEETTEEEEEEEETTE--EEEEEEETTTSSTTHHHHTGGG
T ss_pred CCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccCCeeEEEEEeCCc--eEEEEEccccchhhhHHHHHhc
Confidence 3688899999998876431 113467899999999999999999999999996 6999999764 23544 356
Q ss_pred cCCCCCcEEEEEEEEEecCCCceeEEEEEeeEEEEccCCCCCC
Q 011197 78 GLITTGASIWIQGNVVPSQGSKQKVELKVNKIVLVGKSDPSYP 120 (491)
Q Consensus 78 ~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~i~ils~~~~~~P 120 (491)
|+.||+|+|+|.+.+|++| +++|.|+++++|+||..++|
T Consensus 105 --ld~GDiIgv~G~~~~TktG--Elsi~~~~~~lLsK~l~PLP 143 (143)
T d1e1oa1 105 --WDLGDIIGARGTLFKTQTG--ELSIHCTELRLLTKALRPLP 143 (143)
T ss_dssp --CCTTCEEEEEEEEEECTTC--CEEEEEEEEEEEECCSSCCC
T ss_pred --CCcccEEEeecccEECCCC--cEEEEeeEEEEeccccCCCC
Confidence 9999999999999999876 89999999999999996555
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.6e-17 Score=144.52 Aligned_cols=100 Identities=17% Similarity=0.319 Sum_probs=83.2
Q ss_pred ccceeeccccCCcccCCCCCCcEEEEEEEEeeeecCC-CeEEEEEEcCCCccceEEEEeCCcc---c---hhhhhhcCCC
Q 011197 9 RKKLKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTSDAE---G---YDQVKSGLIT 81 (491)
Q Consensus 9 ~~~~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~g-kl~Fi~LrD~~g~~~iQvv~~~~~~---~---~~~~~~~~L~ 81 (491)
..++.++|+... ++.|++|+|+|||+++|.+| +++|++|||++| .+|+++..+.. . ++.+++ |+
T Consensus 21 ~~r~~i~dl~~~-----~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg--~iQ~~v~~~~~~~~~~~~~~~~~~--l~ 91 (134)
T d1eova1 21 QKRVKFVDLDEA-----KDSDKEVLFRARVHNTRQQGATLAFLTLRQQAS--LIQGLVKANKEGTISKNMVKWAGS--LN 91 (134)
T ss_dssp CCCCCGGGCCTT-----TTTTCEEEEEEEEEEEEECSSSEEEEEEEETTE--EEEEEEECCSSSSSCHHHHHHHTT--CC
T ss_pred cEEEEeccccch-----hcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCC--cEEEEEEeccccchhHHHHHHHhc--CC
Confidence 345677777654 57899999999999999997 699999999996 59999987642 1 344567 99
Q ss_pred CCcEEEEEEEEEecCC-----CceeEEEEEeeEEEEccCCC
Q 011197 82 TGASIWIQGNVVPSQG-----SKQKVELKVNKIVLVGKSDP 117 (491)
Q Consensus 82 ~gd~V~V~G~v~~~~~-----~~~~~el~~~~i~ils~~~~ 117 (491)
.||+|.|+|+|++++. ..+++||+|++++|||+|..
T Consensus 92 ~es~V~V~G~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a~~ 132 (134)
T d1eova1 92 LESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPE 132 (134)
T ss_dssp TTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCS
T ss_pred CCCEEEEEEEEEeCCccCCCCCCCcEEEEEEEEEEEeCCCC
Confidence 9999999999999875 25789999999999999974
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=2.1e-16 Score=151.09 Aligned_cols=132 Identities=16% Similarity=0.145 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhhCCcEEeecceeeccCCCCCCCceeeeecCCCcccccCCCCCCCCCCCCC---CcCccccccCccccc
Q 011197 152 NALAYATHKFFQENGFIWISSPIITASDCEGAGEQFCVTTLIPSSREAAESPVDAIPKTKDG---LIDWSQDFFEKPAFL 228 (491)
Q Consensus 152 s~i~~~iR~ff~~~~F~EV~TPiL~~~~~eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~f~~~~~L 228 (491)
+.+++.|+++|.+.||-|++.|.+.+ +.+..+.++.|++|+|++..|+-....++ ..+++.+ .....-|
T Consensus 20 ~~~~~~i~~if~~~GF~~~~gp~ies-------~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~-~~~~~lL 91 (266)
T d1jjca_ 20 TLMERELVEIFRALGYQAVEGPEVES-------EFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEE-VEGRLLL 91 (266)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEE-------HHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCE-ECSCEEE
T ss_pred HHHHHHHHHHHHHcCCeEeeCCcccc-------chhhhhcccCCcccchhcccceEEEecccccccCccccc-chhhhhh
Confidence 45788899999999999999998875 22334678889999998644432211100 0000001 1223345
Q ss_pred ccchhhHH-HHHhccCC--ceEEEccccccCCCCCCcccccccceeeEeccC--CHHHHHHHHHHHHHH
Q 011197 229 TVSGQLNA-ETYATALS--NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFA--DLKDDMACATAYLQL 292 (491)
Q Consensus 229 ~~Spql~l-ql~~~g~~--rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~--~~~~lm~~~e~li~~ 292 (491)
++..--+. +.|..+.. |++.+|+|||+|.. +.+|.|+|+|+|.-.... ++.+++..++.+++.
T Consensus 92 RTHTS~~q~r~~~~~~~p~~~~~~g~VyRrd~i-D~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~ 159 (266)
T d1jjca_ 92 RTHTSPMQVRYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQA 159 (266)
T ss_dssp CSSSTHHHHHHHHHSCSSEEEEEEEEEECCSCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHhccCCCceEEecccceecCCC-CCcccccceeeeeeeccccccHHHHHHHHHHHHHH
Confidence 55444444 56666653 78999999999998 699999999999988764 488888877777766
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=98.73 E-value=5.7e-08 Score=94.89 Aligned_cols=101 Identities=17% Similarity=0.180 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccC------CCC----CCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASD------CEG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~------~eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-.+.+..+...+++.|..+||.||.||++...+ ..+ ..+.|.+...+
T Consensus 14 ~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~~----------------------- 70 (318)
T d1z7ma1 14 QVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHE----------------------- 70 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTT-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecCC-----------------------
Confidence 466777899999999999999999999996432 111 11344432111
Q ss_pred ccccccCccccccc--chhhHHHHHhc----cCCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 217 WSQDFFEKPAFLTV--SGQLNAETYAT----ALSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 217 ~~~~~f~~~~~L~~--Spql~lql~~~----g~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
|+.+.|+- .+++. ++++. ...|+|++|+|||+|.. ...+..||+|+.+|.-+.+
T Consensus 71 ------g~~l~LRpD~T~~ia-R~~~~~~~~~~~r~~Y~g~vfR~~~~-~~~r~rE~~Q~g~EiiG~~ 130 (318)
T d1z7ma1 71 ------GQSITLRYDFTLPLV-RLYSQIKDSTSARYSYFGKIFRKEKR-HKGRSTENYQIGIELFGES 130 (318)
T ss_dssp ------CCEEEECCCSHHHHH-HHHHTCCSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSC
T ss_pred ------ccEEEeeccccchHH-HHHHHhcccCCcccccccceeEEccc-cccccchhhhhheeccccc
Confidence 23333321 12222 33322 23589999999999976 3445679999999998765
|
| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Asparagine synthetase species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=2.3e-06 Score=80.61 Aligned_cols=272 Identities=16% Similarity=0.110 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHhh-----CCcEEeecceeeccCCCCCCCce----eeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 151 RNALAYATHKFFQE-----NGFIWISSPIITASDCEGAGEQF----CVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 151 Rs~i~~~iR~ff~~-----~~F~EV~TPiL~~~~~eg~~~~F----~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
..+.|..++++|.. .+.+.|..|+++....+-+-++- +|+...+ +.
T Consensus 5 tq~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpV~F~ik-------------------------~~ 59 (327)
T d12asa_ 5 KQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVK-------------------------AL 59 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCS-------------------------SS
T ss_pred HHHHHHHHHHHHHHHHHHHhCcEEecCCeEEcCCCCcccCCCCeeeeeEEecC-------------------------CC
Confidence 44566777777754 69999999999986543111100 0111000 00
Q ss_pred cCcccccccchhhHHHHHhc--cCC---ceEEEcccccc-CCCCCCcccccccceeeEeccCCHHHHHHHHHHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNAETYAT--ALS---NVYTFGPTFRA-ENSNTSRHLAEFWMIEPELAFADLKDDMACATAYLQLYSC 295 (491)
Q Consensus 222 f~~~~~L~~Spql~lql~~~--g~~---rvfeI~~~FR~-E~~~t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~~~~ 295 (491)
=+..+-..+|--=|+|+... +|. -+|+=..+.|. |+.-+..|.-=.-|-|||.....-+--++...+.++.
T Consensus 60 ~~~~~EiVhSLAKWKR~aL~~y~f~~geGlytdMnAiR~DEd~ldn~HSiyVDQWDWEkvI~~~dR~l~~Lk~tV~~--- 136 (327)
T d12asa_ 60 PDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEA--- 136 (327)
T ss_dssp TTCCEEECSCCTTHHHHHHHHTTCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCTTCCSHHHHHHHHHH---
T ss_pred CCCeeEEEeehHHHHHHHHHhcCCCCCceeccCCccccCCcccCCCceeEEEcccchhhhcCccccCHHHHHHHHHH---
Confidence 13333455666667774433 664 58998888887 4533799999999999999976433333333444444
Q ss_pred HHHHHHHhcCcccccccchhhcchhhhhhhhhhcCCCccccHHHHHHHHHHhccccccccccccccc-hHHhhhhccccc
Q 011197 296 MQVRYILDNCKEDMDFFNTWIEKGIIDRLSTVAERDFVQLSYTDAIELLIKAKKKFEFLVKWGCDLQ-SEHERYLTEEAF 374 (491)
Q Consensus 296 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~it~~ea~~~l~~~~~~~~~~~~~g~~l~-~~~e~~l~~~~~ 374 (491)
+.+.+..... .+ ..++ + +.+.+. ..|++-.+.+++... | +++ .+-|..++..+
T Consensus 137 -Iy~~ik~te~-~v--~~~y-~------~~~~Lp---~~I~FitsqeL~~~Y------P-----~Lt~keRE~~i~ke~- 190 (327)
T d12asa_ 137 -IWAGIKATEA-AV--SEEF-G------LAPFLP---DQIHFVHSQELLSRY------P-----DLDAKGRERAIAKDL- 190 (327)
T ss_dssp -HHHHHHHHHH-HH--HHHS-C------CCCCSC---SSCEEEEHHHHHHHS------S-----SSCHHHHHHHHHHHH-
T ss_pred -HHHHHHHHHH-HH--HHhC-C------cccCCC---CceEEEehHHHHHHC------C-----CCChHHHHHHHHHHh-
Confidence 3333321100 00 0000 0 001111 123332222222221 0 222 22333333333
Q ss_pred cCccEEEEeCCCCCcccccccC----CCCCce---------EEEEEEeC------CeeEeechhhhcccHHHHHHHHHHc
Q 011197 375 GGCPVIVSDYPKEIKAFYMRQN----DDGRTV---------AAMDMLVP------RIGELIGGSQREERLEYLEGRLDEL 435 (491)
Q Consensus 375 ~~~p~~i~~~P~~~~pf~~~~~----~~~~~~---------~~fdl~~~------G~gEi~~G~~r~~~~~~~~~~~~~~ 435 (491)
..|||+.--..++-= .+++ +-+.+. -+=|+++- .+ ||.+-+.|-.. +.+.++++..
T Consensus 191 --gAVFi~~IG~~L~~G-~~Hd~RApDYDDW~t~~~~~~~gLNGDIlvw~~vl~~a~-ElSSMGIRVd~-~~L~~QL~~~ 265 (327)
T d12asa_ 191 --GAVFLVGIGGKLSDG-HRHDVRAPDYDDWSTPSELGHAGLNGDILVWNPVLEDAF-ELSSMGIRVDA-DTLKHQLALT 265 (327)
T ss_dssp --SEEEEECCSSCCSSS-CCSSCCCTTTBCCSSBCTTSSBCSEEEEEEEETTTTEEE-EEEEEEEBCCH-HHHHHHHHHH
T ss_pred --CcEEEEecCCcCCCC-CcCCCCCCCCCcccCcccccccCccceEEEechhcCcee-eeecceeEECH-HHHHHHHHHc
Confidence 356666533322110 0111 111122 46666653 57 99999999854 8888888877
Q ss_pred CCCcccHHHHHHHHhcC-CCCccceeccHHHHHHHHcCCCCcccccc
Q 011197 436 KLNRDSYWWYLDLRHYG-SVPHAGFGLGFERLVQFATGVENIRDAIP 481 (491)
Q Consensus 436 g~~~~~~~~yl~~~~~G-~pp~~G~glGidRL~m~l~g~~~Irdvi~ 481 (491)
|-+...--.|-.++-.| +|-+-|.|||=.||+|+|++..+|-+|++
T Consensus 266 ~~~~r~~l~~Hk~ll~~~LP~TIGGGIGQSRlcM~lL~KaHIGEVQa 312 (327)
T d12asa_ 266 GDEDRLELEWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQA 312 (327)
T ss_dssp TCTTGGGSHHHHHHHTTCSCCEEEEEEEHHHHHHHHHTCSCGGGTSC
T ss_pred CChhhhcCHHHHHHHcCCCCccccccccHHHHHHHHHccCcccceee
Confidence 65433223467777667 89999999999999999999999999976
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=98.48 E-value=2.5e-07 Score=90.44 Aligned_cols=103 Identities=17% Similarity=0.241 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CC----CCCceeeeecCCCcccccCCCCCCCCCCCCCCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG----AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLI 215 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg----~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (491)
.-.+.|..+.+.+++.|...||.+|.||++...+. +. ....|.....
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~----------------------- 70 (325)
T d1qe0a2 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDK----------------------- 70 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHH-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhcc-----------------------
Confidence 34677899999999999999999999999976431 11 0122222110
Q ss_pred CccccccCcccccccchhhHH-HHHh-cc----C---CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 216 DWSQDFFEKPAFLTVSGQLNA-ETYA-TA----L---SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 216 ~~~~~~f~~~~~L~~Spql~l-ql~~-~g----~---~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
-+....|+..+..-. +.++ .. . -|+|++|+|||.+.....|. -||+|+.+|.-+.+
T Consensus 71 ------~~~~~~lr~d~t~~~~r~~~~~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~~-rE~~Q~G~EiiG~~ 135 (325)
T d1qe0a2 71 ------GDRSITLRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRY-RQFNQFGVEAIGAE 135 (325)
T ss_dssp ------HHCCEEECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------C-CEEEEEEEEEESCC
T ss_pred ------ccccccccccccccHHHHHHhhccccccccchhhheecceeeeccccCCcc-ceeeecceeecCCc
Confidence 022222333222222 2221 11 1 28999999999997744444 79999999998775
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=98.45 E-value=4.6e-07 Score=88.38 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CCC----CCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC------EGA----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg~----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
-.+.|..+...+++.|...||.+|.||++...+. +.. ...+.....
T Consensus 15 ~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~------------------------ 70 (322)
T d1kmma2 15 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDR------------------------ 70 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhc------------------------
Confidence 4567788999999999999999999999976431 110 112222111
Q ss_pred ccccccCcccccccc--hhhHHHHHhcc------CCceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 217 WSQDFFEKPAFLTVS--GQLNAETYATA------LSNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 217 ~~~~~f~~~~~L~~S--pql~lql~~~g------~~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
-++.+-|+-- ++.. +.++.. --|+|++|+|||.+.....|. -||+|+.+|.-..+
T Consensus 71 -----~g~~l~Lr~D~T~~ia-R~~~~~~~~~~~p~r~~y~g~v~r~~~~~~gr~-re~~Q~g~EiiG~~ 133 (322)
T d1kmma2 71 -----NGDSLTLRPEGTAGCV-RAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRY-RQFHQLGCEVFGLQ 133 (322)
T ss_dssp -----TSCEEEECSCSHHHHH-HHHHHTTCSTTCCEEEEEEEEEECCCCCBTTBC-SEEEEEEEEEESCC
T ss_pred -----ccccccccccccchhh-HHHHhhhhhhhhhhhHhhcccccccCCCCCCcc-chhhhhhHHHhccc
Confidence 1333333322 1221 233221 237899999999998744444 79999999998765
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=98.17 E-value=3.3e-05 Score=74.92 Aligned_cols=104 Identities=18% Similarity=0.291 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC----CCC------CCceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC----EGA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~----eg~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
-.-.+.|..+...+++.|...||.||.||++...+. .|. ...|.+...
T Consensus 13 p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~---------------------- 70 (324)
T d1h4vb2 13 GKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDR---------------------- 70 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECT----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhcc----------------------
Confidence 456788899999999999999999999999965431 011 122222111
Q ss_pred cCccccccCcccccccc--hhhHHHHHhcc---CC---ceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 215 IDWSQDFFEKPAFLTVS--GQLNAETYATA---LS---NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~S--pql~lql~~~g---~~---rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
-++.+.|+-- ++....+.... .. |.|++|+|||.+... .-..-||+|+.+|.-..+
T Consensus 71 -------~g~~l~LRpD~T~~iar~~~~~~~~~~~~p~r~~Y~g~VfR~~~~~-~gr~re~~Q~g~EiiG~~ 134 (324)
T d1h4vb2 71 -------GGRSLTLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSE 134 (324)
T ss_dssp -------TSCEEEECCCSHHHHHHHHHHTTGGGSSSSEEEEEEEEEECCCCC-----CCEEEEEEEEEESCC
T ss_pred -------CCcccccccccccHHHHHHHHhhhhhhchhhhheeeCcccccCccc-CCCcceeccccccccCCC
Confidence 0333333321 12222222232 22 899999999999874 334589999999998764
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.79 E-value=2.3e-05 Score=75.19 Aligned_cols=116 Identities=14% Similarity=0.123 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC-CC-------CCceeeeecCCCcccccCCCCCCCCCCCCCCcCcc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDCE-GA-------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWS 218 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e-g~-------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (491)
-.+++.+|.+.+|+.+.+.||.||.||.|.+...- +. -+.|.++...
T Consensus 29 G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~------------------------- 83 (291)
T d1nyra4 29 GATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLD------------------------- 83 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEET-------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeecc-------------------------
Confidence 56788899999999999999999999999996431 11 1222111100
Q ss_pred ccccCcccccccchhhHHH-HHhcc------C-CceEEEccccccCCCCCCc----ccccccceeeEeccCCHHHHHHHH
Q 011197 219 QDFFEKPAFLTVSGQLNAE-TYATA------L-SNVYTFGPTFRAENSNTSR----HLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 219 ~~~f~~~~~L~~Spql~lq-l~~~g------~-~rvfeI~~~FR~E~~~t~r----Hl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
-+.+++|....+-.+- +.... + =|+|++++|||+|.+ +.. =.-||+|.|.+. |.+.++..+.+
T Consensus 84 ---~~~~~~L~pt~e~~~~~~~~~~~~sy~dLPlr~~~~~~~fR~E~~-~~~~Gl~Rvr~F~~~d~~~-f~~~eq~~~e~ 158 (291)
T d1nyra4 84 ---ETESMVLRPMNCPHHMMIYANKPHSYRELPIRIAELGTMHRYEAS-GAVSGLQRVRGMTLNDSHI-FVRPDQIKEEF 158 (291)
T ss_dssp ---TTEEEEECSSSHHHHHHHHHTSCCBGGGCCEEEEEEEEEECCCCT-TTCBTTTBCSEEEEEEEEE-EECGGGHHHHH
T ss_pred ---ccccccccccchhHHHHhhhcEeccccccceEEeeccceeecCCC-cccccccceeeeeeeehee-ecCCcccHHHH
Confidence 0345677777777774 33322 2 289999999999975 222 235999999987 56767777777
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
++++..
T Consensus 159 ~~~~~~ 164 (291)
T d1nyra4 159 KRVVNM 164 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776655
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=3.5e-05 Score=73.87 Aligned_cols=116 Identities=12% Similarity=0.131 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCCC---CC-----CCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASDCE---GA-----GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~e---g~-----~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
.-.+++.+|.+.+|+.+.+.||.||.||.|.+...- |. .+.|.++..
T Consensus 28 ~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~~------------------------- 82 (291)
T d1qf6a4 28 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSE------------------------- 82 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEET-------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhcccccc-------------------------
Confidence 356788999999999999999999999999986421 11 122222110
Q ss_pred cccccCcccccccchhhHH-HHHhccC-------CceEEEccccccCCCC---CCcccccccceeeEeccCCHHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSN---TSRHLAEFWMIEPELAFADLKDDMACA 286 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~g~-------~rvfeI~~~FR~E~~~---t~rHl~EFtmlE~e~~~~~~~~lm~~~ 286 (491)
+...+|.-..+-.. .+...-. -|+||+++|||+|... +-.=.-||+|-|.+. |..-++.++.+
T Consensus 83 -----~~~~~L~Pt~e~~~~~~~~~~~~sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~~e~~~~e~ 156 (291)
T d1qf6a4 83 -----NREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCTEEQIRDEV 156 (291)
T ss_dssp -----TEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EECGGGHHHHH
T ss_pred -----chhhcccccCcHHHHHHHHccccchhhcCeeEeecceeeecccccccccccccccceecccee-EecchhhHHHH
Confidence 34456776666655 4443322 3799999999999531 222346999999998 66667777888
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
+++++.
T Consensus 157 ~~~~~~ 162 (291)
T d1qf6a4 157 NGCIRL 162 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.60 E-value=0.00025 Score=66.44 Aligned_cols=124 Identities=15% Similarity=0.119 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC--------CceeeeecCCCcccccCCCCCCCCCCCCCC
Q 011197 144 FGAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG--------EQFCVTTLIPSSREAAESPVDAIPKTKDGL 214 (491)
Q Consensus 144 ~~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~--------~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~ 214 (491)
+-.-.+++.+|.+.+++.+.+.||.||.||+|..... +..+ +.|.+.....
T Consensus 36 lP~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~-------------------- 95 (272)
T d1hc7a2 36 RPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGG-------------------- 95 (272)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESS--------------------
T ss_pred CccHHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeecccc--------------------
Confidence 3446789999999999999999999999998877553 2211 2222221110
Q ss_pred cCccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCC-cccccccceeeEeccCCHHHHHHH
Q 011197 215 IDWSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTS-RHLAEFWMIEPELAFADLKDDMAC 285 (491)
Q Consensus 215 ~~~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~-rHl~EFtmlE~e~~~~~~~~lm~~ 285 (491)
+--+.+.+|+...+-.. .+.... + -|+||+++|||+|.+... .=.-+|+|.+.+....+..+....
T Consensus 96 -----~~~~~~~~L~pt~e~~~~~~~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~~~~~~~~ 170 (272)
T d1hc7a2 96 -----EELEEPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHATREEAEEE 170 (272)
T ss_dssp -----SEEEEEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESSHHHHHHH
T ss_pred -----ccccchhhcccccccceeehhhceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcccccchhH
Confidence 11134456777776655 333322 2 279999999999965211 112479999999888888777777
Q ss_pred HHHHHHH
Q 011197 286 ATAYLQL 292 (491)
Q Consensus 286 ~e~li~~ 292 (491)
.++.+..
T Consensus 171 ~~~~~~~ 177 (272)
T d1hc7a2 171 VRRMLSI 177 (272)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766655
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.45 E-value=0.00028 Score=68.14 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC------CC-CCCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC------EG-AGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~------eg-~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
.+-...+..+...+++.|.+.||.+|.||++...+. +. ..+.|.++..+
T Consensus 15 p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~------------------------ 70 (327)
T d1wu7a2 15 PEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKG------------------------ 70 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTT------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhccc------------------------
Confidence 446677889999999999999999999999866431 11 12345443221
Q ss_pred cccccCccccccc--chhhHHHHHhc--c--C-CceEEEccccccCCCCCCcccccccceeeEeccCC
Q 011197 218 SQDFFEKPAFLTV--SGQLNAETYAT--A--L-SNVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD 278 (491)
Q Consensus 218 ~~~~f~~~~~L~~--Spql~lql~~~--g--~-~rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~ 278 (491)
++.+.|+. .|+.. ++++. . . -|+|++|+|||.+.. ..-+.-||+|+.+|.-+.+
T Consensus 71 -----g~~l~LRpD~T~~ia-r~~~~~~~~~~p~k~~y~g~VfR~~~~-~~g~~re~~Q~G~EiiG~~ 131 (327)
T d1wu7a2 71 -----GREVTLIPEATPSTV-RMVTSRKDLQRPLRWYSFPKVWRYEEP-QAGRYREHYQFNADIFGSD 131 (327)
T ss_dssp -----SCEEEECSCSHHHHH-HHHTTCTTCCSSEEEEECCEEECCCCS-CSSCCSEEEEEEEEEESCC
T ss_pred -----chhhcccccccchhh-hHhhhhhhccccceeeccCcceecccc-ccCCcchhhhhhhhhcCCc
Confidence 22222221 12221 22222 1 2 389999999999977 3455679999999998775
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.21 E-value=0.00037 Score=67.71 Aligned_cols=140 Identities=16% Similarity=0.196 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHH--hhCCcEEeecceeeccCC---CCCCCceeeeecCCCcccccCCCC---CCCCCCCCCCcCc
Q 011197 146 AVARVRNALAYATHKFF--QENGFIWISSPIITASDC---EGAGEQFCVTTLIPSSREAAESPV---DAIPKTKDGLIDW 217 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff--~~~~F~EV~TPiL~~~~~---eg~~~~F~vt~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 217 (491)
.-.++|..|++.+|+.| .+.|+.||+||+|++... .|.-+.|. ...-.........+. +...++.-+.
T Consensus 37 ~G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~-d~m~~~~~~~~~~~~~~~~~~~~~~~~~--- 112 (331)
T d1b76a2 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFA-DPMVDNAKARYWTPPRYFNMMFQDLRGP--- 112 (331)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCE-EEECBSSSCBCCCCCEEEECCEEEECSS---
T ss_pred cHHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccC-CceeeecccccccCccchhhcccccccc---
Confidence 35788999999999998 467999999999998542 12112221 000000000000000 0000000000
Q ss_pred cccccCcccccc--cchhhHHH---HHh-cc--C-CceEEEccccccCCCCCCcc---cccccceeeEeccCCHHHHHHH
Q 011197 218 SQDFFEKPAFLT--VSGQLNAE---TYA-TA--L-SNVYTFGPTFRAENSNTSRH---LAEFWMIEPELAFADLKDDMAC 285 (491)
Q Consensus 218 ~~~~f~~~~~L~--~Spql~lq---l~~-~g--~-~rvfeI~~~FR~E~~~t~rH---l~EFtmlE~e~~~~~~~~lm~~ 285 (491)
...-+.+.||+ +++..+.. ... +. + =+++|||+|||||-+ .... .=||||-|+|. |.+-++..+.
T Consensus 113 -~~~~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s-~~~gl~RvReFtq~D~~~-F~~~~q~~~~ 189 (331)
T d1b76a2 113 -RGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-PRNFIFRVREFEQMEIEY-FVRPGEDEYW 189 (331)
T ss_dssp -SCCGGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSS-CCTTTTSCSEEEEEEEEE-EECGGGHHHH
T ss_pred -ccccCCcccccCcchhhHHHHHHhHHhccccccchhhhhccceeccccc-ccccccccchhhhhhhhh-hcCCcchhHH
Confidence 00002333444 33333322 222 22 3 279999999999965 3222 24999999987 6777777777
Q ss_pred HHHHHHH
Q 011197 286 ATAYLQL 292 (491)
Q Consensus 286 ~e~li~~ 292 (491)
....+..
T Consensus 190 ~~~~~~~ 196 (331)
T d1b76a2 190 HRYWVEE 196 (331)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666666
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.10 E-value=0.0015 Score=61.36 Aligned_cols=120 Identities=16% Similarity=0.154 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC---CCC------CCceeeeecCCCcccccCCCCCCCCCCCCCCcCc
Q 011197 147 VARVRNALAYATHKFFQENGFIWISSPIITASDC---EGA------GEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDW 217 (491)
Q Consensus 147 ~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~---eg~------~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (491)
-.+++.+|.+.+|+.+.+.||.||.||+|.+... .++ -+.|.++....
T Consensus 34 G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~----------------------- 90 (268)
T d1nj8a3 34 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGK----------------------- 90 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSS-----------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEecccc-----------------------
Confidence 5678999999999999999999999999875321 111 12333322110
Q ss_pred cccccCcccccccchhhHH-HHHhccC-------CceEEEccccccCCCCCCc---cccccccee-eEeccCCHHHHHHH
Q 011197 218 SQDFFEKPAFLTVSGQLNA-ETYATAL-------SNVYTFGPTFRAENSNTSR---HLAEFWMIE-PELAFADLKDDMAC 285 (491)
Q Consensus 218 ~~~~f~~~~~L~~Spql~l-ql~~~g~-------~rvfeI~~~FR~E~~~t~r---Hl~EFtmlE-~e~~~~~~~~lm~~ 285 (491)
+=-+.+.+|....+-.. .+..... =|+||+++|||+|.. ..+ =.-||++.| .+....+-++..+.
T Consensus 91 --~~~~~~~~L~P~~~~~~~~i~~~~~~Syr~LP~r~~e~~~~fR~E~~-~~~GllR~reF~~~dd~~~~~~~~~~~~~~ 167 (268)
T d1nj8a3 91 --TQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETK-HTRPLIRLREIMTFKEAHTAHSTKEEAENQ 167 (268)
T ss_dssp --SEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCS-CCBTTTBCSBCSCEEEEEEEESSHHHHHHH
T ss_pred --ccchhhhhcccCCCchhHHhhhhhccchhhhheEEeecccccccccc-ccccceeEEEEeeechhceeccccchhhHH
Confidence 00023456766666555 4444322 379999999999943 211 235898555 56666677776666
Q ss_pred HHHHHHH
Q 011197 286 ATAYLQL 292 (491)
Q Consensus 286 ~e~li~~ 292 (491)
.+.++..
T Consensus 168 ~~~~~~~ 174 (268)
T d1nj8a3 168 VKEAISI 174 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=96.89 E-value=0.0012 Score=61.64 Aligned_cols=119 Identities=15% Similarity=0.123 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHHHHHHhhCCcEEeecceeeccC-CC--------CCCCceeeeecCCCcccccCCCCCCCCCCCCCCcC
Q 011197 146 AVARVRNALAYATHKFFQENGFIWISSPIITASD-CE--------GAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLID 216 (491)
Q Consensus 146 ~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~-~e--------g~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (491)
.-.+++.+|.+.+|+.+ ++||.||.||.|.+.. .. -..+.|.++....
T Consensus 31 ~G~~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~---------------------- 87 (265)
T d1nj1a3 31 HGFMIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGL---------------------- 87 (265)
T ss_dssp HHHHHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETT----------------------
T ss_pred cHHHHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCc----------------------
Confidence 34577888999999876 5699999999876432 11 1124555432210
Q ss_pred ccccccCcccccccchhhHH-HHHhcc------C-CceEEEccccccCCCCCCc---ccccccce-eeEeccCCHHHHHH
Q 011197 217 WSQDFFEKPAFLTVSGQLNA-ETYATA------L-SNVYTFGPTFRAENSNTSR---HLAEFWMI-EPELAFADLKDDMA 284 (491)
Q Consensus 217 ~~~~~f~~~~~L~~Spql~l-ql~~~g------~-~rvfeI~~~FR~E~~~t~r---Hl~EFtml-E~e~~~~~~~~lm~ 284 (491)
+=-+.+.+|+-..+-+. .++... + =|+||+|+|||+|.. ..+ =.-|||++ +.+....+-++...
T Consensus 88 ---~~~~~~~~L~pt~~~~~~~~~~~~~~SyrdLPlr~~q~~~~fR~E~~-~~~Gl~R~reF~~~~d~~~~~~~~~~~~~ 163 (265)
T d1nj1a3 88 ---SKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETK-HTRPLIRVREITTFKEAHTIHATASEAEE 163 (265)
T ss_dssp ---EEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCS-CCBTTTBCSEEEEEEEEEEEESSHHHHHH
T ss_pred ---cccceeEEeecccccceEEeeeeeeccccccceEEEeeccceeeecc-cCcCCEEEEEEEEeccceeecCCHHHHHH
Confidence 00034456777776666 554433 2 279999999999943 211 23599865 55555567666655
Q ss_pred HHHHHHH
Q 011197 285 CATAYLQ 291 (491)
Q Consensus 285 ~~e~li~ 291 (491)
..+.++.
T Consensus 164 e~~~~~~ 170 (265)
T d1nj1a3 164 QVERAVE 170 (265)
T ss_dssp HHHHHHH
T ss_pred HhhhhHH
Confidence 5444443
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=96.12 E-value=0.022 Score=54.13 Aligned_cols=121 Identities=20% Similarity=0.252 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCcEEeecceeeccCC-CCCC--CceeeeecCCCcccccCCCCCCCCCCCCCCcCccccc
Q 011197 145 GAVARVRNALAYATHKFFQENGFIWISSPIITASDC-EGAG--EQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDF 221 (491)
Q Consensus 145 ~~~~~~Rs~i~~~iR~ff~~~~F~EV~TPiL~~~~~-eg~~--~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (491)
....++.-.+++.+.+++.++||.||.+|.|..... ++.+ .-|.- .+.. .
T Consensus 53 g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~----------------~~y~-----------~ 105 (311)
T d1seta2 53 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRD----------------QVWA-----------I 105 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGG----------------GSCB-----------B
T ss_pred CHHHHHHHHHHHHHHHhhhcccceEEeechhhccchhhhccccccccc----------------cccc-----------c
Confidence 456677788999999999999999999999998654 2222 11110 0000 0
Q ss_pred cCcccccccchhhHHH-HHhc------cC-CceEEEccccccCCCC------CCcccccccceeeEec-cCCHHHHHHHH
Q 011197 222 FEKPAFLTVSGQLNAE-TYAT------AL-SNVYTFGPTFRAENSN------TSRHLAEFWMIEPELA-FADLKDDMACA 286 (491)
Q Consensus 222 f~~~~~L~~Spql~lq-l~~~------g~-~rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~-~~~~~~lm~~~ 286 (491)
-+.+.||.-..|..+= +... .+ -|+++.++|||.|... +--...+|+.+|.... ..+.++..+..
T Consensus 106 ~~~~~~LipTsE~~l~~~~~~~i~~~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~ 185 (311)
T d1seta2 106 AETDLYLTGTAEVVLNALHSGEILPYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAF 185 (311)
T ss_dssp TTSSEEECSSTHHHHHHTTTTCEEEGGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHH
T ss_pred cccceeecccccchhhhhhhhhhhhhhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHH
Confidence 1345678766666652 2221 12 2799999999999632 2224569999998754 23677777777
Q ss_pred HHHHHH
Q 011197 287 TAYLQL 292 (491)
Q Consensus 287 e~li~~ 292 (491)
++++..
T Consensus 186 ~~~~~~ 191 (311)
T d1seta2 186 QELLEN 191 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777766
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.02 E-value=0.032 Score=45.85 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=55.0
Q ss_pred cEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccc-hhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEEee
Q 011197 30 LMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEG-YDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKVNK 108 (491)
Q Consensus 30 ~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~-~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~~~ 108 (491)
..|++.|+|.++....+-.-..|-|+|| ..|.|....+... ...... +..|++|.|.|.++.-.. +..|.+..
T Consensus 29 ~~V~iVG~V~~i~~~~t~~~y~idDgTG-~~i~v~~w~~~~~~~~~~~~--i~~g~yVrV~G~lk~f~~---~~~i~~~~ 102 (128)
T d2pi2a1 29 SQVTIVGIIRHAEKAPTNIVYKIDDMTA-APMDVRQWVDTDDTSSENTV--VPPETYVKVAGHLRSFQN---KKSLVAFK 102 (128)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSS-SCEEEEEECC-------CCC--CCTTCEEEEEEEEEEETT---EEEEEEEE
T ss_pred EEEEEEEEEEEEEecCCEEEEEEECCCC-CcEEEEEECCCCCCcccccc--ccCCCEEEEEEEEEeeCC---eEEEEEEE
Confidence 4689999999998875555568999997 2588877654321 112234 999999999999986543 46777777
Q ss_pred EEEEc
Q 011197 109 IVLVG 113 (491)
Q Consensus 109 i~ils 113 (491)
+..+.
T Consensus 103 i~~v~ 107 (128)
T d2pi2a1 103 IMPLE 107 (128)
T ss_dssp EEECS
T ss_pred EEEeC
Confidence 76554
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=95.45 E-value=0.026 Score=44.79 Aligned_cols=82 Identities=18% Similarity=0.235 Sum_probs=59.1
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEE
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGN 91 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~ 91 (491)
+++++++.. ..+..|+|.|.|.+.-..-+ | .++|++| .|+|-++.+. |.- .. +++++-|.|.|.
T Consensus 25 ~tV~~a~~~------~Ddt~V~L~G~Iv~~l~~d~--Y-~F~D~TG--~I~VeId~~~--w~g-~~--v~p~~kV~i~Ge 88 (106)
T d1nnxa_ 25 TTVESAKSL------RDDTWVTLRGNIVERISDDL--Y-VFKDASG--TINVDIDHKR--WNG-VT--VTPKDTVEIQGE 88 (106)
T ss_dssp CCHHHHTTS------CSSEEEEEEEEEEEEEETTE--E-EEEETTE--EEEEECCGGG--STT-CC--CCTTSCEEEEEE
T ss_pred EhHHHHhhC------cCCCeEEEEEEEEEEeCCce--E-EEECCCC--cEEEEEChhh--cCC-cc--cCCCCEEEEEEE
Confidence 355555443 46788999999988765543 3 4699996 5898887643 111 14 999999999999
Q ss_pred EEecCCCceeEEEEEeeEEEE
Q 011197 92 VVPSQGSKQKVELKVNKIVLV 112 (491)
Q Consensus 92 v~~~~~~~~~~el~~~~i~il 112 (491)
+-+.-. ..||.|+.|++|
T Consensus 89 vDk~~~---~~eIdV~~I~~l 106 (106)
T d1nnxa_ 89 VDKDWN---SVEIDVKQIRKV 106 (106)
T ss_dssp EEEETT---EEEEEEEEEEEC
T ss_pred EcCCCC---ceEEEEEEEEEC
Confidence 997643 479999998875
|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Archaeal ssDNA-binding protein species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.06 E-value=0.043 Score=44.12 Aligned_cols=84 Identities=15% Similarity=0.140 Sum_probs=58.8
Q ss_pred eeccccCCcccCCCCCCcEEEEEEEEeee---ec------CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCC
Q 011197 13 KIVDVKGGPNEGLDRVGLMIVVAGWVRTL---RA------QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTG 83 (491)
Q Consensus 13 ~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R~------~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~g 83 (491)
+|+||... ...|.|.|+|.++ |. .+++..+.|.|.+| +|.+++..+. ... |..|
T Consensus 4 kI~dL~pg--------~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG--~i~~~~W~~~-----~~~--l~~G 66 (115)
T d1o7ia_ 4 KVGNLKPN--------MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETG--RVKLTLWGKH-----AGS--IKEG 66 (115)
T ss_dssp CGGGCCTT--------CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTE--EEEEEEEGGG-----TTC--CCTT
T ss_pred cHHHCCCC--------CCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCC--eEEEEEeccc-----ccc--CCCC
Confidence 67777642 2348999999986 43 24678889999996 5999887532 234 9999
Q ss_pred cEEEEEEEEEecCCCceeEEEEEeeEEEEccC
Q 011197 84 ASIWIQGNVVPSQGSKQKVELKVNKIVLVGKS 115 (491)
Q Consensus 84 d~V~V~G~v~~~~~~~~~~el~~~~i~ils~~ 115 (491)
|+|.++|--++.-. +.++|.+.+-..+.++
T Consensus 67 dvv~i~na~v~~~~--g~~el~~~~~s~i~~~ 96 (115)
T d1o7ia_ 67 QVVKIENAWTTAFK--GQVQLNAGSKTKIAEA 96 (115)
T ss_dssp CEEEEEEEEEEEET--TEEEEEECTTCEEEEC
T ss_pred CEEEEeeEEEEEEC--CeEEEEECCCeEEEEC
Confidence 99999865544433 3689999764444443
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=95.03 E-value=0.033 Score=51.80 Aligned_cols=44 Identities=14% Similarity=0.082 Sum_probs=30.6
Q ss_pred ceEEEccccccCCCCCCcccccccceeeEeccCC-H---HHHHHHHHHHHHH
Q 011197 245 NVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-L---KDDMACATAYLQL 292 (491)
Q Consensus 245 rvfeI~~~FR~E~~~t~rHl~EFtmlE~e~~~~~-~---~~lm~~~e~li~~ 292 (491)
|+|.+|+|||.++. +.-||+|+-+|.-+.+ . -|++.++-++++.
T Consensus 72 k~~Y~g~VfR~~~~----~~re~~Q~G~EiiG~~~~~aD~Evi~l~~~~l~~ 119 (275)
T d1usya_ 72 KVWYADFVYRYSGS----DLVAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp EEECCEEEEEEETT----EEEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred eeeEEeeEEEeCCC----cccceeecCceeechhhHHHHHHHHHHHHHHHHh
Confidence 89999999998754 3469999999987653 2 3445554444433
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.074 Score=42.67 Aligned_cols=92 Identities=12% Similarity=0.106 Sum_probs=62.2
Q ss_pred eeeccccCCcccCCCCCCcEEEEEEEEeee---e---c---CCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCC
Q 011197 12 LKIVDVKGGPNEGLDRVGLMIVVAGWVRTL---R---A---QSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITT 82 (491)
Q Consensus 12 ~~i~~l~~~~~~~~~~~~~~V~v~G~V~~~---R---~---~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~ 82 (491)
++|++|... ...++|.|||.++ | . .|++.-++|.|.+| .|++++..+... ..... |..
T Consensus 3 ~PI~~L~p~--------~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G--~I~~t~~~~~~~-~f~~~--l~~ 69 (116)
T d1jmca1 3 VPIASLTPY--------QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESG--EIRATAFNEQVD-KFFPL--IEV 69 (116)
T ss_dssp CCGGGCCTT--------CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSC--EEEEEEEHHHHH-HHGGG--CCT
T ss_pred EeHHHcCCC--------CCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCC--CEEEEEchhhhh-hhHhh--ccc
Confidence 567777643 3347899999654 2 2 25777889999997 499999865321 11224 999
Q ss_pred CcEEEEEE-EEEecCC----CceeEEEEEeeEEEEccCC
Q 011197 83 GASIWIQG-NVVPSQG----SKQKVELKVNKIVLVGKSD 116 (491)
Q Consensus 83 gd~V~V~G-~v~~~~~----~~~~~el~~~~i~ils~~~ 116 (491)
|+++.+.| .|+.... ..+.+||....-+.+.+|+
T Consensus 70 G~vy~i~~~~V~~~~~~y~~~~~~yei~f~~~T~I~~~~ 108 (116)
T d1jmca1 70 NKVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPCE 108 (116)
T ss_dssp TCEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEECC
T ss_pred CCEEEEcceEEEEccCcEeccCCcEEEEECCCcEEEECC
Confidence 99999997 4554332 2346899988777776664
|
| >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 14 KDa (RPA14) subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.19 Score=40.24 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=49.7
Q ss_pred CCCcEEEEEEEEeeeecCCCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecCCCceeEEEEE
Q 011197 27 RVGLMIVVAGWVRTLRAQSSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQGSKQKVELKV 106 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~~gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~~~~~~~el~~ 106 (491)
+.|+.|++-|+|.+++..|+.. .+++..+ ..++|.+++.. . ...+.+|.|.|++.. +.+|.+
T Consensus 18 ~~Gk~V~ivGkV~~v~~~g~~~--~~~s~D~-~~V~v~l~~~~-------~--~~~~~~vEViG~V~~------~~sI~~ 79 (115)
T d2pi2e1 18 FIDKPVCFVGRLEKIHPTGKMF--ILSDGEG-KNGTIELMEPL-------D--EEISGIVEVVGRVTA------KATILC 79 (115)
T ss_dssp STTCEEEEEEEEEEECTTSSEE--EEECTTS-CEEEEECSSCC-------S--SCCCSEEEEEEEECT------TSCEEE
T ss_pred hCCCeEEEEEEEEEEcCCCCEE--EEEcCCC-CEEEEEeCCCC-------C--CccCCeEEEEEEECC------CCcEEE
Confidence 6999999999999999876533 4666544 35667666532 2 677889999999932 345777
Q ss_pred eeEEEEcc
Q 011197 107 NKIVLVGK 114 (491)
Q Consensus 107 ~~i~ils~ 114 (491)
..+.-++.
T Consensus 80 ~~~~~fg~ 87 (115)
T d2pi2e1 80 TSYVQFKE 87 (115)
T ss_dssp EEEEECCC
T ss_pred EEEEEcCC
Confidence 77665553
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=88.25 E-value=0.21 Score=48.28 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=27.2
Q ss_pred eEEEccccccCCCCCCcc----cccccceeeEeccCCHHHHHH
Q 011197 246 VYTFGPTFRAENSNTSRH----LAEFWMIEPELAFADLKDDMA 284 (491)
Q Consensus 246 vfeI~~~FR~E~~~t~rH----l~EFtmlE~e~~~~~~~~lm~ 284 (491)
+.|||+||||| + +.|+ .-||+|+|+|. |.+-++-..
T Consensus 212 iAQIGk~FRNE-I-sPr~~l~R~REF~q~EiE~-Fv~P~~~~~ 251 (394)
T d1atia2 212 IAQIGKAFRNE-I-TPRNFIFRVREFEQMEIEY-FVRPGEDEY 251 (394)
T ss_dssp EEEEEEEEBCC-S-SCCTGGGSCSEEEEEEEEE-EECGGGHHH
T ss_pred eeeeccccccc-c-CcccCCcccccceeeeeEE-EEeCCcchH
Confidence 89999999999 3 4553 46999999988 566544433
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=83.49 E-value=1.6 Score=37.97 Aligned_cols=108 Identities=11% Similarity=0.045 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhCCcEEeecceeeccCC----CCCCCceeeeecCCCcccccCCCCCCCCCCCCCCcCccccccCcccccc
Q 011197 154 LAYATHKFFQENGFIWISSPIITASDC----EGAGEQFCVTTLIPSSREAAESPVDAIPKTKDGLIDWSQDFFEKPAFLT 229 (491)
Q Consensus 154 i~~~iR~ff~~~~F~EV~TPiL~~~~~----eg~~~~F~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~L~ 229 (491)
..+.+|++|...||.||-|-.+++..- ....+. +.-.|+-+ ..--+|+
T Consensus 20 ~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~~~--i~l~NPis--------------------------~e~~~lR 71 (207)
T d1jjcb5 20 KEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPR--LLLLNPLA--------------------------PEKAALR 71 (207)
T ss_dssp HHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCS--CEESSCSS--------------------------GGGSEEC
T ss_pred HHHHHHHHHHHCCcchhcCCCcCCHHHHHhhcCCCCc--EEEeCCcc--------------------------hhhhhhh
Confidence 456789999999999999999987432 111112 22223200 1112577
Q ss_pred cchhhHH-HHH----hccC-C--ceEEEccccccCCCC------CCcccccccceeeEeccCCHHHHHHHHHHHHHH
Q 011197 230 VSGQLNA-ETY----ATAL-S--NVYTFGPTFRAENSN------TSRHLAEFWMIEPELAFADLKDDMACATAYLQL 292 (491)
Q Consensus 230 ~Spql~l-ql~----~~g~-~--rvfeI~~~FR~E~~~------t~rHl~EFtmlE~e~~~~~~~~lm~~~e~li~~ 292 (491)
+|-=--+ +.+ ..+. + |+||||++|+..+.. +..+.++.++-. .-.|+.++...++.++..
T Consensus 72 ~sLlpgLL~~~~~N~~r~~~~~~~lFEiG~vf~~~~~~~~~~~~~g~~~~~~~~~~---~~~df~~~Kg~v~~ll~~ 145 (207)
T d1jjcb5 72 THLFPGLVRVLKENLDLDRPERALLFEVGRVFREREETHLAGLLFGEGVGLPWAKE---RLSGYFLLKGYLEALFAR 145 (207)
T ss_dssp SCSHHHHHHHHHHHHHHSCCSEEEEEEEEEEESSSEEEEEEEEEEESCBSCTTSSC---CBCHHHHHHHHHHHHHHH
T ss_pred hhcchHHHHHHHhCcccccccceeeEeeeeeeeccccccchhhhhhcccccccccc---cchhHHHHHHHHHHHHHh
Confidence 7755444 433 2343 3 689999999876421 112233332211 112567777777776655
|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RecG "wedge" domain domain: RecG "wedge" domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.24 E-value=0.89 Score=38.65 Aligned_cols=65 Identities=12% Similarity=0.156 Sum_probs=43.8
Q ss_pred CCCcEEEEEEEEeeeec--C--CCeEEEEEEcCCCccceEEEEeCCccchhhhhhcCCCCCcEEEEEEEEEecC
Q 011197 27 RVGLMIVVAGWVRTLRA--Q--SSVTFIEVNDGSCLSNMQCVMTSDAEGYDQVKSGLITTGASIWIQGNVVPSQ 96 (491)
Q Consensus 27 ~~~~~V~v~G~V~~~R~--~--gkl~Fi~LrD~~g~~~iQvv~~~~~~~~~~~~~~~L~~gd~V~V~G~v~~~~ 96 (491)
..|+.|++.|.|.+.+. . .++.-+.+.|++| .|.+++=......... . ...|+.|.|.|++....
T Consensus 58 ~~g~~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g--~i~l~fFn~~~~~~~~-k--~~~G~~v~v~Gkvk~~~ 126 (180)
T d1gm5a2 58 LPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLV--HVPLKWFNQDYLQTYL-K--QLTGKEVFVTGTVKSNA 126 (180)
T ss_dssp CSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSC--CEEEEECSCCTTHHHH-H--TTCSSCEEEEEEECSCC
T ss_pred CcceeeeeeeEEEeeccccccccceeEEEEEeccc--eEEEEEeCcHHHHHHH-h--hhcCceEEEEEEEeecc
Confidence 35778999999987543 2 3445677899986 4998765442111122 2 45799999999997653
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| >d1ltla_ b.40.4.11 (A:) DNA replication initiator (cdc21/cdc54) N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: DNA replication initiator (cdc21/cdc54) N-terminal domain domain: DNA replication initiator (cdc21/cdc54) N-terminal domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=80.18 E-value=3.8 Score=36.22 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=22.9
Q ss_pred CCCCcEEEEEEEEEecC---CCceeEEEEEeeEEEE
Q 011197 80 ITTGASIWIQGNVVPSQ---GSKQKVELKVNKIVLV 112 (491)
Q Consensus 80 L~~gd~V~V~G~v~~~~---~~~~~~el~~~~i~il 112 (491)
+.+||.|.|+|.+...+ .+....-|.+..|++|
T Consensus 204 ~~pGd~V~i~GI~~~~~~~~~~~~~~~i~a~~Ie~l 239 (239)
T d1ltla_ 204 LTPGDIVRVTGTLRTVRDERTKRFKNFIYGNYTEFL 239 (239)
T ss_dssp CCTTCEEEEEEEEEEEEETTTTEEEEEEEEEECCBC
T ss_pred cCCCCEEEEEEEEEEeecCCCCceEEEEEEEEEEEC
Confidence 89999999999986432 2333566666666553
|