Citrus Sinensis ID: 011268

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNQMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
cccccccEEcccccccEEEEEEEEccccccccccccccccccccccccccEEEcccccccEEEEEccccEEEEEEcccEEEEEEEEcccccccccccccEEEEccEEEcccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccEEEcEEEEcccccccEEEEEccccEEEEEEccccEEEEEcccccccccccccccEEccEEEcccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccEEEcccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccEEEEEEEcccccccccEEEEEcccccEEEEEccccEEEEEccccccccccccccccccEEccccccccEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccccEEccccccccEEEEEccccEEEEEEccccEEEEEccccccccccccccccccEEEEcccccccEEEc
cccccccccHHcccccEEEEEEEccccccccHHHcccccccccccccccccccccHHHHHHHHHHEccccccEEEEEcccEEEEEcccccccccccccccccccccHHHccccEEEEEEcccEEEEEEccEEEEEEcccccccccccccccccccEEcccccccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccccEHHHHcccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccEHHHHccccEEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccHHHHHHHcccEEEEEEEcccEEEEEEccccEEEEEcccccccccccccccccccEHHHHccccEEEEEEcccEEEEEEcccEEEEEccccccccccccccccccccccEEHHHHcccEEEEEEEcccEEEEEEcccEEEEEcccccccccccccccccccEEEEcccccEEEEEc
madryrlfsieelpSHLIFEILTSGRLSAVDLAHLELtsktfggshglypqkFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEhssdivetsagnqmqitTGRYHTLlisnssvfscgsslcgvlghgpettqcvsftrinfpsaaHVVQVSASENHAAFVlqsgqvftcgdnssfccghrdtnrpifrPRLVEalkgvpckqvtaglnFTGFLTIRGHvhtcgsnthgqlghgdtldrptpksiapleevgsvvqiaagpSYMLAVTGNgvvysfgsgsnfclghgeqhdelqPRAIQTFRRKGIHVVRVSAGDEHVVALdssgyvytwgkgycgalghgdeidktlpeplsslksHLAVQVCARKRKTfvlvdtgsvygfgwmgfgslgfpdrgvsdkvlrpRILDSLRAHHVSQISTGLYHTVvvtdrgrlfgfgdneraqlghdtlrgclepTEIFIQEMEEDTGLA
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSdivetsagnqmQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVrvsagdehvvaLDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAhhvsqistglyhtvVVTDRGRLFGFGDneraqlghdtlrgcLEPTEIFIQEMEEDTGLA
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNQMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
****YRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNQMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQL***************PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI**********
******L**IEELPSHLIFEILTSGRLSAVDLAHLEL**********LYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRF***********ETSAGNQMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNQMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
*****RLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNQMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
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MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLAASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNQMQITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQEMEEDTGLA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query489 2.2.26 [Sep-21-2011]
Q9FN03440 Ultraviolet-B receptor UV no no 0.728 0.809 0.311 2e-37
Q15034 1050 Probable E3 ubiquitin-pro yes no 0.556 0.259 0.318 4e-30
Q4U2R1 4836 E3 ubiquitin-protein liga no no 0.638 0.064 0.292 2e-29
Q5PQN1 1057 Probable E3 ubiquitin-pro no no 0.543 0.251 0.329 2e-29
Q6PAV2 1057 Probable E3 ubiquitin-pro no no 0.543 0.251 0.329 2e-29
O95714 4834 E3 ubiquitin-protein liga no no 0.638 0.064 0.292 3e-29
Q5GLZ8 1057 Probable E3 ubiquitin-pro no no 0.543 0.251 0.329 7e-29
Q15751 4861 Probable E3 ubiquitin-pro no no 0.658 0.066 0.303 1e-28
Q9VR91 4912 Probable E3 ubiquitin-pro no no 0.693 0.069 0.291 2e-27
F2Z461 1003 E3 ISG15--protein ligase no no 0.519 0.253 0.311 8e-26
>sp|Q9FN03|UVR8_ARATH Ultraviolet-B receptor UVR8 OS=Arabidopsis thaliana GN=UVR8 PE=1 SV=1 Back     alignment and function desciption
 Score =  157 bits (397), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/366 (31%), Positives = 180/366 (49%), Gaps = 10/366 (2%)

Query: 101 EHSSDIVETSAGNQMQITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRIN 159
           + ++D V       + I+ G  H++ L+S   V S G    G LGHG +     S T+++
Sbjct: 4   DMAADEVTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLS 62

Query: 160 FPSAAHVVQVSASENHAAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVP 218
                 +V V+   +H     QSG +V++ G       GH +++  +F P  ++AL G+ 
Sbjct: 63  ALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSD-LFTPLPIKALHGIR 121

Query: 219 CKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAG 278
            KQ+  G +    +T+ G V + G N +GQLG GDT D   P+ I   E +  +  +AAG
Sbjct: 122 IKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAG 180

Query: 279 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVA 338
             +  AVT +G +Y +G G    LG G++ D L P  + +    G  +  V+ G  H ++
Sbjct: 181 AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTIS 238

Query: 339 LDSSGYVYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVY 398
           +  SG +YT+G    G LGHGD  D  +P  L +L +    Q+    R T  L   G +Y
Sbjct: 239 VSYSGALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLY 298

Query: 399 GFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDN 458
           G+GW  FG +G  +       ++ R  D  +   V Q+S G  HT+ VT+R  +F +G  
Sbjct: 299 GWGWNKFGQVGVGNNLDQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRG 355

Query: 459 ERAQLG 464
              QLG
Sbjct: 356 TNGQLG 361
UV-B specific signaling component that acts as UV-B photoreceptor and plays a key role in establishing UV-protective responses in plants. Upon UV-B irradiation, UVR8 undergoes an immediate switch from homodimer to monomer, accumulates in the nucleus, interacts with the photomorphogenic repressor COP1 and regulates the expression of the transcription factor HY5 by associating with chromatin (through histone H2B binding) in the HY5 promoter region. UVR8 is involved in controlling aspects of leaf growth and morphogenesis in response to UV-B, is required for normal progression of endocycle and has a regulatory role in stomatal differentiation. Is required for plant circadian clock response to photomorphogenic UV-B light, partly through the transcriptional activation of responsive clock genes. Promotes photosynthetic efficiency at elevated levels of UV-B. Plays a role in mediating the effects of UV-B radiation on pathogen resistance by controlling the expression of the sinapate biosynthetic pathway. The two tryptophans, Trp-285 and Trp-233, serve collectively as the UV-B chromophore.
Arabidopsis thaliana (taxid: 3702)
>sp|Q15034|HERC3_HUMAN Probable E3 ubiquitin-protein ligase HERC3 OS=Homo sapiens GN=HERC3 PE=1 SV=1 Back     alignment and function description
>sp|Q4U2R1|HERC2_MOUSE E3 ubiquitin-protein ligase HERC2 OS=Mus musculus GN=Herc2 PE=1 SV=3 Back     alignment and function description
>sp|Q5PQN1|HERC4_RAT Probable E3 ubiquitin-protein ligase HERC4 OS=Rattus norvegicus GN=Herc4 PE=2 SV=1 Back     alignment and function description
>sp|Q6PAV2|HERC4_MOUSE Probable E3 ubiquitin-protein ligase HERC4 OS=Mus musculus GN=Herc4 PE=2 SV=2 Back     alignment and function description
>sp|O95714|HERC2_HUMAN E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens GN=HERC2 PE=1 SV=2 Back     alignment and function description
>sp|Q5GLZ8|HERC4_HUMAN Probable E3 ubiquitin-protein ligase HERC4 OS=Homo sapiens GN=HERC4 PE=1 SV=1 Back     alignment and function description
>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1 OS=Homo sapiens GN=HERC1 PE=1 SV=2 Back     alignment and function description
>sp|Q9VR91|HERC2_DROME Probable E3 ubiquitin-protein ligase HERC2 OS=Drosophila melanogaster GN=HERC2 PE=1 SV=3 Back     alignment and function description
>sp|F2Z461|HERC6_MOUSE E3 ISG15--protein ligase Herc6 OS=Mus musculus GN=Herc6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
255575340497 Ran GTPase binding protein, putative [Ri 0.995 0.979 0.836 0.0
224114984478 predicted protein [Populus trichocarpa] 0.977 1.0 0.826 0.0
225461391492 PREDICTED: probable E3 ubiquitin-protein 0.993 0.987 0.811 0.0
224128193492 predicted protein [Populus trichocarpa] 0.995 0.989 0.805 0.0
147820281511 hypothetical protein VITISV_023540 [Viti 0.989 0.947 0.807 0.0
356549747485 PREDICTED: probable E3 ubiquitin-protein 0.983 0.991 0.802 0.0
255646519485 unknown [Glycine max] 0.983 0.991 0.795 0.0
356544020485 PREDICTED: probable E3 ubiquitin-protein 0.983 0.991 0.795 0.0
449446943491 PREDICTED: probable E3 ubiquitin-protein 0.991 0.987 0.763 0.0
18400769488 regulator of chromosome condensation rep 0.977 0.979 0.755 0.0
>gi|255575340|ref|XP_002528573.1| Ran GTPase binding protein, putative [Ricinus communis] gi|223532017|gb|EEF33828.1| Ran GTPase binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 408/488 (83%), Positives = 441/488 (90%), Gaps = 1/488 (0%)

Query: 1   MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
           MAD+YRL SI+ELPSHLI EIL +GRLSA DL  LELTSKTFGGSHGLYP KF+SLVD A
Sbjct: 1   MADKYRLVSIDELPSHLILEILMTGRLSATDLVCLELTSKTFGGSHGLYPHKFKSLVDFA 60

Query: 61  ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNQMQITTG 120
           A QLCA HS+Y GM  N Q ELL+RC GNWKRVLRFL +VE SS +VETSAGN MQITTG
Sbjct: 61  AFQLCASHSVYTGMLWNAQKELLDRCGGNWKRVLRFLLAVEESSGMVETSAGN-MQITTG 119

Query: 121 RYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVL 180
           RYHTLLISNSSV+SCGSSLCGVLGHGPETTQCVSF+RI FPS A VVQVSAS NHAA++L
Sbjct: 120 RYHTLLISNSSVYSCGSSLCGVLGHGPETTQCVSFSRITFPSLARVVQVSASHNHAAYIL 179

Query: 181 QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHT 240
           +SG+VFTCGDNSSFCCGH+DT+RPIFRPR VEALKGVPCKQV AGLNFT FLT  GHV++
Sbjct: 180 ESGEVFTCGDNSSFCCGHQDTSRPIFRPRFVEALKGVPCKQVAAGLNFTVFLTRTGHVYS 239

Query: 241 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNF 300
           CG+NTHGQLGHGDTLDRPTPK I   E +GSV QIAAGPSY+LAVT +GVVYSFGSGSNF
Sbjct: 240 CGTNTHGQLGHGDTLDRPTPKIIESFEGIGSVAQIAAGPSYVLAVTDSGVVYSFGSGSNF 299

Query: 301 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGD 360
           CLGHGEQH+E  PRAIQTFRRK +HVVRVSAGDEHVVALDSSG+VYTWGKGYCGALGHGD
Sbjct: 300 CLGHGEQHNEFHPRAIQTFRRKNLHVVRVSAGDEHVVALDSSGFVYTWGKGYCGALGHGD 359

Query: 361 EIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVL 420
           EIDKTLPEPL+SLKSHLAVQVCARKRKTFVLVD G V+GFGWMGFGSLGFPDRGVSDKV+
Sbjct: 360 EIDKTLPEPLNSLKSHLAVQVCARKRKTFVLVDGGCVFGFGWMGFGSLGFPDRGVSDKVM 419

Query: 421 RPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQ 480
           RPRILDSLRAH VSQISTGLYHTV VT +G++FGFGDNERAQLGHDTLRGCLEPTEIF+Q
Sbjct: 420 RPRILDSLRAHRVSQISTGLYHTVAVTSQGQVFGFGDNERAQLGHDTLRGCLEPTEIFLQ 479

Query: 481 EMEEDTGL 488
           E   DTG+
Sbjct: 480 EFGHDTGI 487

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224114984|ref|XP_002316910.1| predicted protein [Populus trichocarpa] gi|222859975|gb|EEE97522.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225461391|ref|XP_002284809.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2 [Vitis vinifera] gi|302143037|emb|CBI20332.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224128193|ref|XP_002329104.1| predicted protein [Populus trichocarpa] gi|222869773|gb|EEF06904.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147820281|emb|CAN60415.1| hypothetical protein VITISV_023540 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356549747|ref|XP_003543252.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC1-like [Glycine max] Back     alignment and taxonomy information
>gi|255646519|gb|ACU23737.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356544020|ref|XP_003540454.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Glycine max] Back     alignment and taxonomy information
>gi|449446943|ref|XP_004141229.1| PREDICTED: probable E3 ubiquitin-protein ligase HERC2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|18400769|ref|NP_566512.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|42572455|ref|NP_974323.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|7021728|gb|AAF35409.1| unknown protein [Arabidopsis thaliana] gi|15795108|dbj|BAB02372.1| unnamed protein product [Arabidopsis thaliana] gi|23297250|gb|AAN12924.1| unknown protein [Arabidopsis thaliana] gi|332642152|gb|AEE75673.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] gi|332642153|gb|AEE75674.1| regulator of chromosome condensation repeat-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query489
TAIR|locus:2090136488 AT3G15430 "AT3G15430" [Arabido 0.977 0.979 0.755 5.2e-200
TAIR|locus:2092190532 AT3G26100 [Arabidopsis thalian 0.910 0.836 0.345 8.9e-54
TAIR|locus:2163986440 UVR8 "UVB-RESISTANCE 8" [Arabi 0.723 0.804 0.313 2e-40
TAIR|locus:2165770 1073 AT5G42140 "AT5G42140" [Arabido 0.619 0.282 0.311 7.2e-35
TAIR|locus:2025277 1103 PRAF1 "AT1G76950" [Arabidopsis 0.621 0.275 0.310 1.5e-33
FB|FBgn0035207 1058 CG9153 [Drosophila melanogaste 0.719 0.332 0.303 4.7e-33
ZFIN|ZDB-GENE-070718-6 4832 herc2 "hect domain and RLD 2" 0.638 0.064 0.298 7.3e-33
UNIPROTKB|F1NBC5 1050 HERC3 "Uncharacterized protein 0.619 0.288 0.321 7.5e-33
UNIPROTKB|E1BW48 4841 HERC2 "Uncharacterized protein 0.638 0.064 0.289 4.7e-31
UNIPROTKB|E1C8K2 4841 HERC2 "Uncharacterized protein 0.638 0.064 0.289 4.7e-31
TAIR|locus:2090136 AT3G15430 "AT3G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1936 (686.6 bits), Expect = 5.2e-200, P = 5.2e-200
 Identities = 362/479 (75%), Positives = 404/479 (84%)

Query:     1 MADRYRLFSIEELPSHLIFEILTSGRLSAVDLAHLELTSKTFGGSHGLYPQKFRSLVDLA 60
             MADR  L S E+LPSHLI E+LTSGRLSAVDL  LELTSK FGGSHG YP KFRSL D A
Sbjct:     1 MADRNCLISFEDLPSHLILEVLTSGRLSAVDLLSLELTSKVFGGSHGFYPLKFRSLADYA 60

Query:    61 ASQLCALHSIYAGMSRNVQIELLNRCNGNWKRVLRFLQSVEHSSDIVETSAGNQMQITTG 120
             ASQLC++H +Y GM    Q EL   C GNWKR+  FLQSVE SSD+VETS G +MQI TG
Sbjct:    61 ASQLCSMHPVYVGMGLTTQKELFANCEGNWKRLFSFLQSVEQSSDMVETSQG-KMQIATG 119

Query:   121 RYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVL 180
             +YHTLLI+NS V+SCG SL GVL HG ETTQCV+FT I FP  A V QVSA++NH+AFVL
Sbjct:   120 KYHTLLINNSKVYSCGVSLSGVLAHGSETTQCVAFTPIEFPFPAQVAQVSATQNHSAFVL 179

Query:   181 QSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHT 240
             QSGQV TCGDNSS CCGH DT+RPIFRP+LVEALKG PCKQV AGL+FT FL+  GH +T
Sbjct:   180 QSGQVLTCGDNSSHCCGHLDTSRPIFRPKLVEALKGTPCKQVAAGLHFTVFLSREGHAYT 239

Query:   241 CGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNF 300
             CGSNTHGQLGHGDTLDRP PK +  L+ +G VVQIAAGPSY+LAVT +G VYSFGSGSNF
Sbjct:   240 CGSNTHGQLGHGDTLDRPVPKVVEFLKTIGPVVQIAAGPSYVLAVTQDGSVYSFGSGSNF 299

Query:   301 CLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHGD 360
             CLGHGEQ DELQPR IQ F+RKGIH++RVSAGDEH VALDS+G VYTWGKGYCGALGHGD
Sbjct:   300 CLGHGEQQDELQPRVIQAFKRKGIHILRVSAGDEHAVALDSNGRVYTWGKGYCGALGHGD 359

Query:   361 EIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVL 420
             E DK  P+ L +L + LAVQVCARKRKTFVLV+ G +YGFGWMGFGSLGFPDRGVSDKVL
Sbjct:   360 ENDKITPQVLVNLNNCLAVQVCARKRKTFVLVEGGLLYGFGWMGFGSLGFPDRGVSDKVL 419

Query:   421 RPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFI 479
             RPR+L+ L+ H VSQ+STGLYHT+VVT RGR+FGFGDNERAQLGHD+LRGCLEPTEIF+
Sbjct:   420 RPRVLECLKPHRVSQVSTGLYHTIVVTQRGRIFGFGDNERAQLGHDSLRGCLEPTEIFL 478
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0008536 "Ran GTPase binding" evidence=ISS
GO:0006486 "protein glycosylation" evidence=RCA
TAIR|locus:2092190 AT3G26100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163986 UVR8 "UVB-RESISTANCE 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2165770 AT5G42140 "AT5G42140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025277 PRAF1 "AT1G76950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0035207 CG9153 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070718-6 herc2 "hect domain and RLD 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBC5 HERC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BW48 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C8K2 HERC2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XI.3954.1
hypothetical protein (478 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.75940001
hypothetical protein (143 aa)
  •     0.490
eugene3.01650001
annotation not avaliable (143 aa)
  •     0.490
estExt_Genewise1_v1.C_LG_X2024
hypothetical protein (203 aa)
  •     0.490

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 6e-26
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-22
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-20
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 2e-19
COG5184 476 COG5184, ATS1, Alpha-tubulin suppressor and relate 4e-18
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 5e-10
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 7e-09
COG5184476 COG5184, ATS1, Alpha-tubulin suppressor and relate 1e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-07
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 1e-06
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 1e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 4e-05
pfam0041550 pfam00415, RCC1, Regulator of chromosome condensat 8e-05
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 3e-04
pfam0064648 pfam00646, F-box, F-box domain 0.001
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.002
pfam1354030 pfam13540, RCC1_2, Regulator of chromosome condens 0.004
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
 Score =  110 bits (276), Expect = 4e-26
 Identities = 89/385 (23%), Positives = 150/385 (38%), Gaps = 49/385 (12%)

Query: 117 ITTGRYHTLLISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINF--PSAAHVVQVSASEN 174
           I    +  LL+  +SV+S GS+    LG G + T+        F     A +++++   N
Sbjct: 57  INKHTH--LLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGN 114

Query: 175 HAAFVLQSGQVFTCGDNSSFCCG---HRDTN----------------RPIFRPRLVEALK 215
           H+  +   G +++ GDN     G   H+D                   P   P    A  
Sbjct: 115 HSLGLDHDGNLYSWGDNDDGALGRDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKS 174

Query: 216 GVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVG--SVV 273
            +   ++  G   +  LT  G V++ G+   G+LG G   +           +V   ++V
Sbjct: 175 HLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVPKKAIV 234

Query: 274 QIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKG--------IH 325
           Q+AAG  +++A+T  G VY +GS          Q  +L     +  +            +
Sbjct: 235 QLAAGADHLIALTNEGKVYGWGSN---------QKGQLGRPTSERLKLVVLVGDPFAIRN 285

Query: 326 VVRVSAGDEHVVALDSSGYVYTWGKGYCGALGHG----DEIDKTLPEPLSSLKSHLAVQV 381
           +  V+ G +H +ALD  G +Y WG    G LG G         T P     L       +
Sbjct: 286 IKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSI 345

Query: 382 CARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLY 441
            A +  + +L   G++Y FG    G LG  +    D            A  + Q++ G +
Sbjct: 346 SAGESHSLILRKDGTLYAFGRGDRGQLGIQEEITID---VSTPTKLSVAIKLEQVACGTH 402

Query: 442 HTVVVTDRGRLFGFGDNERAQLGHD 466
           H +  TD G ++ +G  E   LG+ 
Sbjct: 403 HNIARTDDGSVYSWGWGEHGNLGNG 427

Length = 476
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|227511 COG5184, ATS1, Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201217 pfam00415, RCC1, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|201368 pfam00646, F-box, F-box domain Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information
>gnl|CDD|205718 pfam13540, RCC1_2, Regulator of chromosome condensation (RCC1) repeat Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 489
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
COG5184476 ATS1 Alpha-tubulin suppressor and related RCC1 dom 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1427443 consensus Uncharacterized conserved protein, conta 100.0
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.97
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.95
KOG1428 3738 consensus Inhibitor of type V adenylyl cyclases/Ne 99.91
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.26
PF0041551 RCC1: Regulator of chromosome condensation (RCC1) 99.24
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.18
KOG0941 850 consensus E3 ubiquitin protein ligase [Posttransla 99.13
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.12
PF1354030 RCC1_2: Regulator of chromosome condensation (RCC1 99.12
PF1293747 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 97.93
PF0064648 F-box: F-box domain; InterPro: IPR001810 The F-box 97.25
smart0025641 FBOX A Receptor for Ubiquitination Targets. 96.92
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 95.36
KOG0274537 consensus Cdc4 and related F-box and WD-40 protein 95.26
KOG3669 705 consensus Uncharacterized conserved protein, conta 95.02
KOG3669 705 consensus Uncharacterized conserved protein, conta 93.8
PF11725 1774 AvrE: Pathogenicity factor; InterPro: IPR021085 Th 91.95
KOG0315311 consensus G-protein beta subunit-like protein (con 90.76
KOG2997366 consensus F-box protein FBX9 [General function pre 90.11
KOG0943 3015 consensus Predicted ubiquitin-protein ligase/hyper 89.12
KOG0646 476 consensus WD40 repeat protein [General function pr 85.61
KOG0315311 consensus G-protein beta subunit-like protein (con 84.65
KOG0291 893 consensus WD40-repeat-containing subunit of the 18 84.19
PHA03098534 kelch-like protein; Provisional 83.5
PF13013109 F-box-like_2: F-box-like domain 82.31
PHA02713557 hypothetical protein; Provisional 81.17
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=4.5e-53  Score=404.01  Aligned_cols=351  Identities=26%  Similarity=0.383  Sum_probs=290.9

Q ss_pred             CceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCC--CCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCccc
Q 011268          121 RYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFP--SAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCG  197 (489)
Q Consensus       121 ~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~--~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg  197 (489)
                      ..|..+. .-..||+||+|..+|||.+........|+..++.  ....|++++||..|+++|++||+||+||.|..|+||
T Consensus        58 ~~~~~~~~~~~~v~~~Gsn~~~eLGlg~de~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lg  137 (476)
T COG5184          58 NKHTHLLVKMASVYSWGSNGMNELGLGNDETKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALG  137 (476)
T ss_pred             ccchhhhhheeeeEEEecCcceeeccCCchhcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccc
Confidence            3444455 7788999999999999999888876778887776  445899999999999999999999999999999999


Q ss_pred             CCC---------------CCCceeccEEecc----CCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCC-
Q 011268          198 HRD---------------TNRPIFRPRLVEA----LKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDR-  257 (489)
Q Consensus       198 ~~~---------------~~~~~~~p~~v~~----~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~-  257 (489)
                      ...               ......+|..|+.    ....+|++++||++++++|+++|+||+||.+..+.++.+...+. 
T Consensus       138 r~~~~~~~~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~  217 (476)
T COG5184         138 RDIHKDICDQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQ  217 (476)
T ss_pred             cccccccccccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccc
Confidence            876               1123567777776    22347999999999999999999999999998888888744432 


Q ss_pred             -----CCceeecCCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEec
Q 011268          258 -----PTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAG  332 (489)
Q Consensus       258 -----~~p~~i~~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g  332 (489)
                           .+|..+.    ...|+++++|.+|.++|+++|+||+||+|..||||.........+..+..+. .-..|..|+||
T Consensus       218 k~~~~~~p~~v~----~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~~~~~~lv~~~f-~i~~i~~vacG  292 (476)
T COG5184         218 KTSIQFTPLKVP----KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSERLKLVVLVGDPF-AIRNIKYVACG  292 (476)
T ss_pred             cceeeeeeeecC----chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhhcccccccCChh-hhhhhhhcccC
Confidence                 3444444    2589999999999999999999999999999999998777766665554322 12247889999


Q ss_pred             CCeEEEEcCCCcEEEEecCCCCCCCCCCC----CCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCC
Q 011268          333 DEHVVALDSSGYVYTWGKGYCGALGHGDE----IDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSL  408 (489)
Q Consensus       333 ~~h~~~lt~~G~vy~wG~n~~gqlg~~~~----~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqL  408 (489)
                      .+|++||+++|++|+||.|.+||||.+..    .....|.....+.+..|.++++|..|+++|..+|.||+||++..+||
T Consensus       293 ~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~i~~is~ge~H~l~L~~~G~l~a~Gr~~~~ql  372 (476)
T COG5184         293 KDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVTICSISAGESHSLILRKDGTLYAFGRGDRGQL  372 (476)
T ss_pred             cceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCceEEEEecCcceEEEEecCceEEEecCCccccc
Confidence            99999999999999999999999999822    12234666666777789999999999999999999999999999999


Q ss_pred             CCCCCCCCCceeccEEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCC-CCCCcccCeEEEc
Q 011268          409 GFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHD-TLRGCLEPTEIFI  479 (489)
Q Consensus       409 G~~~~~~~~~~~~P~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~-~~~~~~~p~~v~~  479 (489)
                      |..... ...+..|.++...  .++.+++||..|+++.+++|+||.||+|++||||.+ ....+..|+.|+-
T Consensus       373 g~~~~~-~~~~~~~~~ls~~--~~~~~v~~gt~~~~~~t~~gsvy~wG~ge~gnlG~g~~~~~~~~pt~i~~  441 (476)
T COG5184         373 GIQEEI-TIDVSTPTKLSVA--IKLEQVACGTHHNIARTDDGSVYSWGWGEHGNLGNGPKEADVLVPTLIRQ  441 (476)
T ss_pred             cCcccc-eeecCCccccccc--cceEEEEecCccceeeccCCceEEecCchhhhccCCchhhhccccccccc
Confidence            998744 3445666666543  379999999999999999999999999999999998 4678888888874

>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms] Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS) Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B Back     alignment and domain information
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B Back     alignment and domain information
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ] Back     alignment and domain information
>smart00256 FBOX A Receptor for Ubiquitination Targets Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only] Back     alignment and domain information
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG2997 consensus F-box protein FBX9 [General function prediction only] Back     alignment and domain information
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0646 consensus WD40 repeat protein [General function prediction only] Back     alignment and domain information
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] Back     alignment and domain information
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PF13013 F-box-like_2: F-box-like domain Back     alignment and domain information
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
4d9s_A406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-38
4d9s_A 406 Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv 1e-29
4dnw_A374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-38
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 1e-29
4dnw_A 374 Crystal Structure Of Uvb-Resistance Protein Uvr8 Le 2e-16
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-38
4dnv_A370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 1e-29
4dnv_A 370 Crystal Structure Of The W285f Mutant Of Uvb-Resist 2e-16
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 7e-38
4dnu_A372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 3e-29
4dnu_A 372 Crystal Structure Of The W285a Mutant Of Uvb-Resist 1e-16
3kci_A389 The Third Rld Domain Of Herc2 Length = 389 3e-28
3kci_A 389 The Third Rld Domain Of Herc2 Length = 389 1e-21
1a12_A413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 6e-15
1a12_A 413 Regulator Of Chromosome Condensation (Rcc1) Of Huma 9e-13
1i2m_B402 Ran-Rcc1-So4 Complex Length = 402 7e-15
1i2m_B 402 Ran-Rcc1-So4 Complex Length = 402 8e-13
3mvd_K423 Crystal Structure Of The Chromatin Factor Rcc1 In C 5e-13
3mvd_K 423 Crystal Structure Of The Chromatin Factor Rcc1 In C 4e-05
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 2e-10
3of7_A 473 The Crystal Structure Of Prp20p From Saccharomyces 1e-07
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/350 (32%), Positives = 174/350 (49%), Gaps = 10/350 (2%)
Query: 117 ITTGRYHTL-LISNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENH 175
           I+ G  H++ L+S   V S G    G LGHG +     S T+++      +V V+   +H
Sbjct: 21  ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-DAEDRPSPTQLSALDGHQIVSVTCGADH 79
Query: 176 AAFVLQSG-QVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTI 234
                QSG +V++ G       GH +++  +F P  ++AL G+  KQ+  G +    +T+
Sbjct: 80  TVAYSQSGMEVYSWGWGDFGRLGHGNSSD-LFTPLPIKALHGIRIKQIACGDSHCLAVTM 138
Query: 235 RGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSF 294
            G V + G N +GQLG GDT D   P+ I   E +  +  +AAG  +  AVT +G +Y +
Sbjct: 139 EGEVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGI-RIKMVAAGAEHTAAVTEDGDLYGW 197
Query: 295 GSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGYCG 354
           G G    LG G++ D L P  + +    G  +  V+ G  H +++  SG +YT+G    G
Sbjct: 198 GWGRYGNLGLGDRTDRLVPERVTS--TGGEKMSMVACGWRHTISVSYSGALYTYGWSKYG 255
Query: 355 ALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRG 414
            LGHGD  D  +P  L +L +    Q+    R T  L   G +YG+GW  FG +G  +  
Sbjct: 256 QLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGNNL 315
Query: 415 VSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLG 464
                ++ R  D  +   V Q+S G  HT+ VT+R  +F +G     QLG
Sbjct: 316 DQCSPVQVRFPDDQK---VVQVSCGWRHTLAVTERNNVFAWGRGTNGQLG 362
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv Resistance Locus 8) Length = 406 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8 Length = 374 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance Protein Uvr8 Length = 370 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance Protein Uvr8 Length = 372 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2 Length = 389 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human Length = 413 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex Length = 402 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex With The Nucleosome Core Particle Length = 423 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces Cerevisiae And Its Binding Properties To Gsp1p And Histones Length = 473 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query489
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-108
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-86
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-85
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 3e-73
3kci_A 389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 1e-33
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 1e-107
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 7e-85
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 3e-75
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 2e-56
4d9s_A 406 UVB-resistance protein UVR8; UV resistance, UV-B p 5e-53
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 4e-39
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 1e-87
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-77
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 7e-74
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 2e-06
3mvd_K423 Regulator of chromosome condensation; protein-DNA 1e-82
3mvd_K423 Regulator of chromosome condensation; protein-DNA 9e-72
3mvd_K423 Regulator of chromosome condensation; protein-DNA 7e-68
3mvd_K 423 Regulator of chromosome condensation; protein-DNA 1e-14
3of7_A 473 Regulator of chromosome condensation; beta-propell 2e-69
3of7_A473 Regulator of chromosome condensation; beta-propell 9e-68
3of7_A 473 Regulator of chromosome condensation; beta-propell 8e-44
3of7_A 473 Regulator of chromosome condensation; beta-propell 3e-22
3of7_A473 Regulator of chromosome condensation; beta-propell 1e-05
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-32
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 7e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-31
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 8e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
 Score =  325 bits (835), Expect = e-108
 Identities = 96/365 (26%), Positives = 159/365 (43%), Gaps = 9/365 (2%)

Query: 116 QITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASEN 174
              +     L    + +++  G +  G LG   E  +    T     +    VQ+   E 
Sbjct: 5   HHHSSGRENLYFQGSGTIYGWGHNHRGQLGGI-EGAKVKVPTPCEALATLRPVQLIGGEQ 63

Query: 175 HAAFVLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCK--QVTAGLNFTGFL 232
               V   G+++  G  +    G   T   +  P L+E+++ V  K   V +G      L
Sbjct: 64  TLFAVTADGKLYATGYGAGGRLGIGGTE-SVSTPTLLESIQHVFIKKVAVNSGGKHCLAL 122

Query: 233 TIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVY 292
           +  G V++ G    G+LGHG+      P+ I  L  +  VV +AAG ++   VT  G +Y
Sbjct: 123 SSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGI-EVVDVAAGGAHSACVTAAGDLY 181

Query: 293 SFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGYVYTWGKGY 352
           ++G G    LGH +  D+L+P+ ++  +   +  +   +GD   + L     V++WG G 
Sbjct: 182 TWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGD 241

Query: 353 CGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPD 412
            G LG G      +P  + SL     V+V    + +  L  +G+VY +G   +  LG   
Sbjct: 242 YGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWGKGDYHRLGHGS 301

Query: 413 RGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCL 472
               D V RPR +  L+   V  I+TG  H V  T+ G ++ +GDN+  QLG  T     
Sbjct: 302 ---DDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWGDNDEGQLGDGTTNAIQ 358

Query: 473 EPTEI 477
            P  +
Sbjct: 359 RPRLV 363
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Length = 389 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Length = 406 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Length = 413 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Length = 423 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Length = 473 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Length = 282 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3kci_A389 Probable E3 ubiquitin-protein ligase HERC2; WD40, 100.0
1a12_A413 RCC1, regulator of chromosome condensation 1; guan 100.0
4d9s_A406 UVB-resistance protein UVR8; UV resistance, UV-B p 100.0
3mvd_K423 Regulator of chromosome condensation; protein-DNA 100.0
3of7_A473 Regulator of chromosome condensation; beta-propell 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
3qhy_B282 Beta-lactamase inhibitory protein II; enyzme-inhib 100.0
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 99.08
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 98.93
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 98.79
1fs1_A53 SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L 97.4
3l2o_B312 F-box only protein 4; small G protein fold, UBL co 96.71
1p22_A435 F-BOX/WD-repeat protein 1A; ubiquitination, degrad 96.5
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.28
4gbf_A400 Phikz131; 7-bladed beta-propeller, possibly partic 96.07
2ovr_B445 FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 95.35
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 95.15
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 94.74
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 94.64
2e31_A297 FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui 94.27
1k3i_A656 Galactose oxidase precursor; blade beta propeller, 93.47
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 93.41
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 92.69
2zwa_A695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 91.69
3k26_A366 Polycomb protein EED; WD40, structural genomics, N 91.64
3odt_A313 Protein DOA1; ubiquitin, nuclear protein; HET: MSE 91.4
3v7d_B464 Cell division control protein 4; WD 40 domain, pho 89.67
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 89.09
3sfz_A1249 APAF-1, apoptotic peptidase activating factor 1; a 88.78
1pgu_A615 Actin interacting protein 1; WD repeat, seven-blad 88.67
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 88.52
4aez_A401 CDC20, WD repeat-containing protein SLP1; cell cyc 88.38
3jrp_A379 Fusion protein of protein transport protein SEC13 88.31
1gxr_A337 ESG1, transducin-like enhancer protein 1; transcri 88.01
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 87.82
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 87.8
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 86.17
3no0_A276 DNA gyrase subunit A; DNA topology, topoisomerase, 84.8
3zwl_B369 Eukaryotic translation initiation factor 3 subuni; 84.29
4g56_B357 MGC81050 protein; protein arginine methyltransfera 83.04
4a11_B408 DNA excision repair protein ERCC-8; DNA binding pr 82.99
1sq9_A397 Antiviral protein SKI8; WD repeat, beta-transducin 82.82
3mmy_A368 MRNA export factor; mRNA export, nuclear protein; 82.6
3vl1_A420 26S proteasome regulatory subunit RPN14; beta-prop 82.55
3uc1_A327 DNA gyrase subunit A; DNA binding protein, topoiso 81.79
1r5m_A425 SIR4-interacting protein SIF2; transcription corep 81.04
3ii7_A306 Kelch-like protein 7; protein-binding, kelch-repea 80.88
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
Probab=100.00  E-value=1.3e-74  Score=585.22  Aligned_cols=367  Identities=31%  Similarity=0.477  Sum_probs=335.7

Q ss_pred             eecCCCCeEEEEecCceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCC-c
Q 011268          107 VETSAGNQMQITTGRYHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSG-Q  184 (489)
Q Consensus       107 ~~~~~~~~~~i~~G~~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G-~  184 (489)
                      +..+..+|++|+||..|+++| ++|+||+||+|.+||||.+...+ ...|++++.....+|++|+||..|+++|+++| +
T Consensus        11 v~~~~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~   89 (406)
T 4d9s_A           11 VTAPPRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGME   89 (406)
T ss_dssp             ----CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTE
T ss_pred             CCCCccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCE
Confidence            344566799999999999999 99999999999999999998776 35666666556669999999999999999986 9


Q ss_pred             EEEEeCCCCCcccCCCCCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCCCCCCCCCceeec
Q 011268          185 VFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHGDTLDRPTPKSIA  264 (489)
Q Consensus       185 v~~wG~n~~gqlg~~~~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~~~~~~~~p~~i~  264 (489)
                      ||+||.|.+||||.+.. .....|.+++.+.+.+|++|+||..|++||+++|+||+||.|.+||||.++......|.++.
T Consensus        90 v~~wG~n~~GqLG~g~~-~~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~  168 (406)
T 4d9s_A           90 VYSWGWGDFGRLGHGNS-SDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWGRNQNGQLGLGDTEDSLVPQKIQ  168 (406)
T ss_dssp             EEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECG
T ss_pred             EEEEcCCCCcCCCCCCC-CccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeCCCCCccCCCCCCCCcccceEec
Confidence            99999999999999887 56788999999999999999999999999999999999999999999999999889999998


Q ss_pred             CCCCCCCEEEEEeCCCEEEEEEcCCcEEEecCCCCcccCCCCCCCCcCceEeeccccCCccEEEEEecCCeEEEEcCCCc
Q 011268          265 PLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDELQPRAIQTFRRKGIHVVRVSAGDEHVVALDSSGY  344 (489)
Q Consensus       265 ~~~~~~~i~~i~~G~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~~p~~i~~~~~~~~~i~~i~~g~~h~~~lt~~G~  344 (489)
                      .+.. .+|++|+||.+|+++|+++|+||+||.|.+||||.+.......|.++..+.  ..+|++|+||.+|+++|+++|+
T Consensus       169 ~~~~-~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~--~~~i~~va~G~~ht~~l~~~G~  245 (406)
T 4d9s_A          169 AFEG-IRIKMVAAGAEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPERVTSTG--GEKMSMVACGWRHTISVSYSGA  245 (406)
T ss_dssp             GGTT-CCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEEECCCST--TCCEEEEEECSSEEEEEETTCC
T ss_pred             ccCC-CcEEEEecCCCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccEEecccC--CceEEEEEECCCcEEEEcCCCC
Confidence            8765 589999999999999999999999999999999999988888898887653  4589999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCcccceeeccCCCCcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceeccEE
Q 011268          345 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRPRI  424 (489)
Q Consensus       345 vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P~~  424 (489)
                      ||+||.|.+||||+++......|++++.+.+.+|++|+||.+|++||+++|+||+||+|.+||||.+.   ......|.+
T Consensus       246 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~~G~v~~wG~n~~GqLG~g~---~~~~~~p~~  322 (406)
T 4d9s_A          246 LYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWGWNKFGQVGVGN---NLDQCSPVQ  322 (406)
T ss_dssp             EEEEECCTTSTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSS---SSCEEEEEE
T ss_pred             EEEeeCCCCCCCCCCCCcCccccEEecccCCCCEEEEEecCCEEEEEcCCCeEEEeeCCCCCCCCCCC---CCCCccCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999987   455678999


Q ss_pred             cCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccCeEEEccc
Q 011268          425 LDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQE  481 (489)
Q Consensus       425 v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~  481 (489)
                      ++.+...+|++|+||.+|++||+++|+||+||+|++||||+++..+...|+.|+...
T Consensus       323 v~~~~~~~v~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~  379 (406)
T 4d9s_A          323 VRFPDDQKVVQVSCGWRHTLAVTERNNVFAWGRGTNGQLGIGESVDRNFPKIIEALS  379 (406)
T ss_dssp             ECCGGGCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCCCEEEEEECGGGC
T ss_pred             EeccCCCcEEEEEeCCCeEEEEeCCCCEEEecCCCCCccCCCCCCCCcCCEEeeeec
Confidence            987777899999999999999999999999999999999999999999999886543
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} Back     alignment and structure
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B Back     alignment and structure
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A Back     alignment and structure
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Back     alignment and structure
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Back     alignment and structure
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>4gbf_A Phikz131; 7-bladed beta-propeller, possibly participates in binding of phage to the HOST cell, viral protein; 1.95A {Pseudomonas phage phikz} Back     alignment and structure
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Back     alignment and structure
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A Back     alignment and structure
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} Back     alignment and structure
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Back     alignment and structure
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} Back     alignment and structure
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} Back     alignment and structure
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} Back     alignment and structure
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} Back     alignment and structure
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} Back     alignment and structure
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} Back     alignment and structure
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X Back     alignment and structure
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} Back     alignment and structure
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A Back     alignment and structure
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} Back     alignment and structure
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} Back     alignment and structure
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 489
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 2e-33
d1a12a_401 b.69.5.1 (A:) Regulator of chromosome condensation 1e-27
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 3e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 6e-10
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 4e-07
d1jtdb_273 b.69.5.2 (B:) beta-lactamase inhibitor protein-II, 1e-06
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (322), Expect = 2e-33
 Identities = 83/381 (21%), Positives = 133/381 (34%), Gaps = 24/381 (6%)

Query: 120 GRYHTLLISNS-SVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAF 178
              H    +    V + G    G LG G    +      ++ P    VVQ  A   H   
Sbjct: 4   KVSHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIPE--DVVQAEAGGMHTVC 61

Query: 179 VLQSGQVFTCGDNSSFCCGHRDTNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHV 238
           + +SGQV++ G N     G   +          +        QV+AG + T  LT  G V
Sbjct: 62  LSKSGQVYSFGCNDEGALGRDTSVEGSEMVP-GKVELQEKVVQVSAGDSHTAALTDDGRV 120

Query: 239 HTCGSNTHGQLGHGDTLDRPTPKSIAPLEEVGSVVQIAAGPSYMLAVTGNGVVYSFGSGS 298
              GS        G             ++    VV++A+G  +++ +T +G +Y+ G G 
Sbjct: 121 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDVPVVKVASGNDHLVMLTADGDLYTLGCGE 180

Query: 299 NFCLGHGEQHDELQPRAIQTFR--------------RKGIHVVRVSAGDEHVVALDSSGY 344
              LG   +    +       R              R  +       G     A+   G+
Sbjct: 181 QGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH 240

Query: 345 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKSHL--AVQVCARKRKTFVLVDTGSVYGFGW 402
           VY +G      LG        +P+ L+S K+     V     +  T  +   G  Y  G 
Sbjct: 241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGR 300

Query: 403 MGFGSLGFPDRGVSDKVLRPRILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQ 462
             +G LG  +      +  P ++  L A  VS ++ G      VT  GR+F +G     Q
Sbjct: 301 AEYGRLGLGEGAEEKSI--PTLISRLPA--VSSVACGASVGYAVTKDGRVFAWGMGTNYQ 356

Query: 463 LGHDTLRGCLEPTEIFIQEME 483
           LG         P E+  +++E
Sbjct: 357 LGTGQDEDAWSPVEMMGKQLE 377
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Length = 401 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query489
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1a12a_401 Regulator of chromosome condensation RCC1 {Human ( 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1jtdb_273 beta-lactamase inhibitor protein-II, BLIP-II {Stre 100.0
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 98.21
d1fs1a141 Skp2 {Human (Homo sapiens) [TaxId: 9606]} 97.89
d2ovrb1102 F-box/WD repeat-containing protein 7, FBXW7 {Human 97.21
d1nexb1100 Cdc4 F-box and linker domains {Baker's yeast (Sacc 96.87
d1k3ia3387 Galactose oxidase, central domain {Fungi (Fusarium 96.78
d1p22a1118 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 95.0
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 94.56
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 89.46
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 87.86
d1p22a2293 F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom 87.07
d1nexb2355 Cdc4 propeller domain {Baker's yeast (Saccharomyce 85.19
d1yfqa_342 Cell cycle arrest protein BUB3 {Baker's yeast (Sac 84.89
d2bbkh_355 Methylamine dehydrogenase, H-chain {Paracoccus den 84.18
d1rwia_260 Serine/threonine-protein kinase PknD {Mycobacteriu 82.66
d2ovrb2342 F-box/WD repeat-containing protein 7, FBXW7 {Human 80.77
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: Regulator of chromosome condensation RCC1
domain: Regulator of chromosome condensation RCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-59  Score=470.36  Aligned_cols=351  Identities=23%  Similarity=0.307  Sum_probs=289.6

Q ss_pred             ceeEEe-eCCcEEEEeCCCCCCcCCCCCCCeeeeeeEeeCCCCCCEEEEEeCCceeEEEEcCCcEEEEeCCCCCcccCCC
Q 011268          122 YHTLLI-SNSSVFSCGSSLCGVLGHGPETTQCVSFTRINFPSAAHVVQVSASENHAAFVLQSGQVFTCGDNSSFCCGHRD  200 (489)
Q Consensus       122 ~h~~~l-~~g~vy~wG~n~~gqLG~g~~~~~~~~p~~~~~~~~~~i~~vs~G~~~~~~lt~~G~v~~wG~n~~gqlg~~~  200 (489)
                      .|++++ .+|+||+||.|.+||||++........|++++++  .+|++|+||..|+++|+++|+||+||.|.+||||.+.
T Consensus         6 ~h~~~~~~~G~vy~wG~n~~GqLG~g~~~~~~~~P~~v~~~--~~i~~ia~G~~h~~al~~~G~vy~wG~n~~GQLG~g~   83 (401)
T d1a12a_           6 SHRSHSTEPGLVLTLGQGDVGQLGLGENVMERKKPALVSIP--EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDT   83 (401)
T ss_dssp             CCTTCCCCCBEEEEEEECTTSTTCSCTTCCEEEEEEEECCS--SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCC
T ss_pred             eEEEEECCCCEEEEEeCCCCCCCCCCCCCceeccCEEeCCC--CCeEEEEeCCCEEEEEeCCCEEEEEeCCCCCCCCccc
Confidence            689999 9999999999999999999877666667766554  5799999999999999999999999999999999987


Q ss_pred             CCCceeccEEeccCCCCCeEEEEccCCeeEEEEcCCcEEEEeCCCCCccCCC--CCCCCCCceeecCCCCCCCEEEEEeC
Q 011268          201 TNRPIFRPRLVEALKGVPCKQVTAGLNFTGFLTIRGHVHTCGSNTHGQLGHG--DTLDRPTPKSIAPLEEVGSVVQIAAG  278 (489)
Q Consensus       201 ~~~~~~~p~~v~~~~~~~i~~V~~G~~h~~~Lt~~G~vy~wG~n~~GqlG~~--~~~~~~~p~~i~~~~~~~~i~~i~~G  278 (489)
                      .. ....|.+.......+|++|+||..|+++++++|+||+||.+..++.+..  .......+......  ..+|++|+||
T Consensus        84 ~~-~~~~~~~~~~~~~~~i~~i~~g~~~~~~~~~~g~v~~wG~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~~i~~g  160 (401)
T d1a12a_          84 SV-EGSEMVPGKVELQEKVVQVSAGDSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQVQL--DVPVVKVASG  160 (401)
T ss_dssp             CS-TTGGGSCEECCCCSCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEECC--SSCEEEEEEC
T ss_pred             cc-ccccccccccccccceeeecccccceeeccccccceeccccccccccccccCCccccceeeeecc--CCceeEEEec
Confidence            64 2344444444556789999999999999999999999998766554433  33222222222222  2589999999


Q ss_pred             CCEEEEEEcCCcEEEecCCCCcccCCCCCCCCc-----------CceEeeccc---cCCccEEEEEecCCeEEEEcCCCc
Q 011268          279 PSYMLAVTGNGVVYSFGSGSNFCLGHGEQHDEL-----------QPRAIQTFR---RKGIHVVRVSAGDEHVVALDSSGY  344 (489)
Q Consensus       279 ~~~~~~lt~~G~vy~wG~n~~gqlG~~~~~~~~-----------~p~~i~~~~---~~~~~i~~i~~g~~h~~~lt~~G~  344 (489)
                      ..|+++++++|++|+||.|.++|||........           .|..+....   ....+|.+|+||..|+++|+++|+
T Consensus       161 ~~~~~~~~~~g~~~~~G~n~~gqlg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~i~~v~~g~~~~~~l~~~g~  240 (401)
T d1a12a_         161 NDHLVMLTADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGH  240 (401)
T ss_dssp             SSEEEEEETTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEETTEEEEEETTCC
T ss_pred             ccceeeeecCCcccccccCCccccCCCCccccccCCccccccccccceeeccccCCCCCceEEEEEecCCeEEEEecCCe
Confidence            999999999999999999999999986442211           233332211   133579999999999999999999


Q ss_pred             EEEEecCCCCCCCCCCCCCcccceeeccCCC--CcEEEEEeeCCeEEEEEcCCcEEEEEcCCCCCCCCCCCCCCCceecc
Q 011268          345 VYTWGKGYCGALGHGDEIDKTLPEPLSSLKS--HLAVQVCARKRKTFVLVDTGSVYGFGWMGFGSLGFPDRGVSDKVLRP  422 (489)
Q Consensus       345 vy~wG~n~~gqlg~~~~~~~~~p~~v~~~~~--~~i~~v~~G~~ht~~lt~~G~vy~wG~n~~gqLG~~~~~~~~~~~~P  422 (489)
                      ||.||.|.++++|.........+..+..+..  ..++++++|..|+++++++|+||+||.|.+||||.++.  ......|
T Consensus       241 v~~~g~n~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~g~~~~~~l~~~g~v~~wG~n~~gqlG~g~~--~~~~~~P  318 (401)
T d1a12a_         241 VYGFGLSNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAEYGRLGLGEG--AEEKSIP  318 (401)
T ss_dssp             EEEEECCTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSCTT--CCCEEEE
T ss_pred             EeeecccceecccccccccceeccccccccccceeEEEEeeeccceeeeccCCCEEEecccccCccCCCcc--cccccCC
Confidence            9999999999999998888877777765443  46999999999999999999999999999999999864  3445678


Q ss_pred             EEcCcCCCCCEEEEEecCCeEEEEEcCCCEEEEeCCCCCCCCCCCCCCcccCeEEEccc
Q 011268          423 RILDSLRAHHVSQISTGLYHTVVVTDRGRLFGFGDNERAQLGHDTLRGCLEPTEIFIQE  481 (489)
Q Consensus       423 ~~v~~~~~~~v~~i~~G~~ht~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~  481 (489)
                      ++++.+.  +|++|+||.+|++||+++|+||+||+|.+||||+|+..++..|++|..+.
T Consensus       319 ~~i~~~~--~i~~Is~G~~hs~alt~dG~v~~WG~n~~GQLG~G~~~~~~~P~~v~~~~  375 (401)
T d1a12a_         319 TLISRLP--AVSSVACGASVGYAVTKDGRVFAWGMGTNYQLGTGQDEDAWSPVEMMGKQ  375 (401)
T ss_dssp             EECCSSS--SEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSSSCSCEEEEEECCSTT
T ss_pred             EEcCCCC--CeEEEEeeCCEEEEEeCCCeEEEEecCCCCCCCCCCCCCEecCEEeeccC
Confidence            8888764  79999999999999999999999999999999999999999999986544
>d1a12a_ b.69.5.1 (A:) Regulator of chromosome condensation RCC1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Back     information, alignment and structure
>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure