Citrus Sinensis ID: 011335

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDDAVHGEEAYALWGDGEKYDPRKHGWHGSSYSEDIAPSPYVNGARGVTINL
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcccccccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHccccHHccccccccccccEEEccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHccccccccccccccccccccccccccccccccccccccccccccccc
ccccccccccccccccccHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEccccccccccccccHHHcHHHEcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHcccHHHHcccEEcccccEEEEHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEHcHHEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccHHHHcHHHHHHcccccccccccccccccccccccccccccccccEEEEEc
matppipiayqqelpavpdwlnkgdsawQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMafgdqllpfwgkgapalgqkylvgrarvpesthevdgktvttepfYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGafslwgggflyqwgvidysggyVIHVSSGIAGLTaaywvgprlksdkerfppnNVLLMLAGAGLlwmgwsgfnggapYAAHIASSIAILNTNVAAATSLLVWTCLDviffgkpsvIGAVQGMMTGLVcitpgaglvQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGlltglfaepqlckltlpeptrgafyggkggVQFLKQIVGALFVIAWNLVSTTIILLAIRIfiplrmpeeqlaigddavhgeeayalwgdgekydprkhgwhgssysediapspyvngargvtinl
matppipiayqqelPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARvpesthevdgktvtTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDDAVHGEEAYALWGDGEKYDPRKHGWHGSsysediapspyvngargvtinl
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVllmlagagllwmgwSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVtgllgglltglFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDDAVHGEEAYALWGDGEKYDPRKHGWHGSSYSEDIAPSPYVNGARGVTINL
*******IAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDDAVHGEEAYALWGDGEKYD*****W*************************
*******IAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDDAVHGEEAYALWGD************************************
MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDDAVHGEEAYALWGDGEKYDPRKHGWHGSSYSEDIAPSPYVNGARGVTINL
**************PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDDAVHGEEAYALWGDGE**************************ARGV*INL
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MATPPIPIAYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDDAVHGEEAYALWGDGEKYDPRKHGWHGSSYSEDIAPSPYVNGARGVTINL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query488 2.2.26 [Sep-21-2011]
Q9M6N7475 Ammonium transporter 2 OS yes no 0.965 0.991 0.744 0.0
Q84KJ6498 Ammonium transporter 3 me yes no 0.940 0.921 0.720 0.0
Q8S230501 Ammonium transporter 2 me no no 0.997 0.972 0.698 0.0
Q84KJ7486 Ammonium transporter 2 me no no 0.975 0.979 0.742 0.0
Q8S233497 Ammonium transporter 2 me no no 0.997 0.979 0.684 0.0
Q69T29480 Ammonium transporter 3 me no no 0.942 0.958 0.705 0.0
Q851M9479 Ammonium transporter 3 me no no 0.936 0.954 0.701 1e-179
O66515423 Ammonia channel OS=Aquife yes no 0.817 0.943 0.365 6e-63
O26759412 Putative ammonium transpo yes no 0.838 0.992 0.356 5e-59
O26757407 Putative ammonium transpo no no 0.825 0.990 0.332 5e-54
>sp|Q9M6N7|AMT2_ARATH Ammonium transporter 2 OS=Arabidopsis thaliana GN=AMT2 PE=1 SV=2 Back     alignment and function desciption
 Score =  718 bits (1853), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/481 (74%), Positives = 414/481 (86%), Gaps = 10/481 (2%)

Query: 9   AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
           AY   LP VP+WLNKGD+AWQ+TA+TLVG+QSMPGL+I+YASIVKKKWAVNSAFM LYAF
Sbjct: 4   AYDPSLPEVPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAF 63

Query: 69  AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFY 128
           AAVL+CWVL+CY+MAFG++LLPFWGKG PA  Q YL G+A++P S            P++
Sbjct: 64  AAVLLCWVLLCYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIPNSN--------VAAPYF 115

Query: 129 AMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQ 188
            MATLVYFQFTFAAIT IL+AGSVLGRMNI+AWMAFVPLWL+FSYTVGA+S+WGGGFLYQ
Sbjct: 116 PMATLVYFQFTFAAITTILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWGGGFLYQ 175

Query: 189 WGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGF 248
           WGVIDYSGGYVIH+SSG+AG  AAYWVGPR K+D+ERFPPNNVLLMLAGAGLLWMGWSGF
Sbjct: 176 WGVIDYSGGYVIHLSSGVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGLLWMGWSGF 235

Query: 249 NGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPG 308
           NGGAPYAA++ SSIA+LNTN++AATSLLVWT LDVIFFGKPSVIGA+QGM+TGL  +TPG
Sbjct: 236 NGGAPYAANLTSSIAVLNTNLSAATSLLVWTTLDVIFFGKPSVIGAIQGMVTGLAGVTPG 295

Query: 309 AGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGL 368
           AGL+Q+WAAI++G++SG+ PW +MMI+HKK +LLQ+VDDTLAVF+THAV GLLGG++TGL
Sbjct: 296 AGLIQTWAAIIIGVVSGTAPWASMMIIHKKSALLQKVDDTLAVFYTHAVAGLLGGIMTGL 355

Query: 369 FAEPQLCKLTLPEP-TRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPL 427
           FA P LC L LP P TRGAFYGG GG Q LKQ+ GA F+  WN+VSTTIILLAIR+FIPL
Sbjct: 356 FAHPDLCVLVLPLPATRGAFYGGNGGKQLLKQLAGAAFIAVWNVVSTTIILLAIRVFIPL 415

Query: 428 RMPEEQLAIGDDAVHGEEAYALWGDGEKYDPRKHGWHGSSYSEDIAPSPYVNGARGVTIN 487
           RM EE+L IGDDA HGEEAYALWGDGEK+D  +H        E   PS YV+GARGVTI 
Sbjct: 416 RMAEEELGIGDDAAHGEEAYALWGDGEKFDATRHVQQFERDQEAAHPS-YVHGARGVTIV 474

Query: 488 L 488
           L
Sbjct: 475 L 475
High affinity ammonium transporter that may play an important role in moving ammonium between the apoplast and symplast of cells throughout the plant. Does not transport methylammonium.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84KJ6|AMT31_ORYSJ Ammonium transporter 3 member 1 OS=Oryza sativa subsp. japonica GN=AMT3-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8S230|AMT22_ORYSJ Ammonium transporter 2 member 2 OS=Oryza sativa subsp. japonica GN=AMT2-2 PE=2 SV=2 Back     alignment and function description
>sp|Q84KJ7|AMT21_ORYSJ Ammonium transporter 2 member 1 OS=Oryza sativa subsp. japonica GN=AMT2-1 PE=2 SV=1 Back     alignment and function description
>sp|Q8S233|AMT23_ORYSJ Ammonium transporter 2 member 3 OS=Oryza sativa subsp. japonica GN=AMT2-3 PE=2 SV=1 Back     alignment and function description
>sp|Q69T29|AMT33_ORYSJ Ammonium transporter 3 member 3 OS=Oryza sativa subsp. japonica GN=AMT3-3 PE=2 SV=1 Back     alignment and function description
>sp|Q851M9|AMT32_ORYSJ Ammonium transporter 3 member 2 OS=Oryza sativa subsp. japonica GN=AMT3-2 PE=2 SV=1 Back     alignment and function description
>sp|O66515|AMT_AQUAE Ammonia channel OS=Aquifex aeolicus (strain VF5) GN=amt PE=1 SV=1 Back     alignment and function description
>sp|O26759|Y663_METTH Putative ammonium transporter MTH_663 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_663 PE=3 SV=1 Back     alignment and function description
>sp|O26757|Y661_METTH Putative ammonium transporter MTH_661 OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_661 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
373501951490 ammonium transporter [Malus hupehensis] 0.983 0.979 0.826 0.0
373501953490 ammonium transporter [Malus hupehensis] 0.983 0.979 0.824 0.0
224091028485 ammonium transporter [Populus trichocarp 0.981 0.987 0.856 0.0
255579286477 ammonium transporter, putative [Ricinus 0.969 0.991 0.837 0.0
224140459485 ammonium transporter [Populus trichocarp 0.983 0.989 0.844 0.0
357506079487 Ammonium transporter 3 member [Medicago 0.987 0.989 0.819 0.0
356521048486 PREDICTED: ammonium transporter 2-like [ 0.981 0.985 0.835 0.0
356496235488 PREDICTED: ammonium transporter 2-like [ 0.981 0.981 0.819 0.0
356568134486 PREDICTED: ammonium transporter 2-like [ 0.981 0.985 0.833 0.0
15799272486 putative ammonium transporter AMT2 [Lotu 0.981 0.985 0.814 0.0
>gi|373501951|gb|AEY75248.1| ammonium transporter [Malus hupehensis] gi|384237235|gb|AFH74972.1| ammonium transporter AMT2;1 [Malus hupehensis] gi|384237237|gb|AFH74973.1| ammonium transporter AMT2;1 [Malus hupehensis] Back     alignment and taxonomy information
 Score =  801 bits (2070), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 400/484 (82%), Positives = 443/484 (91%), Gaps = 4/484 (0%)

Query: 9   AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
           AY +  PAVP WLNKGD+AWQ+TA+T VG+QSMPGL+I+YASIVKKKWAVNSAFM LYAF
Sbjct: 7   AYSEITPAVPPWLNKGDNAWQLTAATFVGLQSMPGLVILYASIVKKKWAVNSAFMALYAF 66

Query: 69  AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDG---KTVTTE 125
           AAVLICWVLV YRMAFGDQLLPFW KGAP+LGQK+L+ RA+VPESTH  DG   +T T E
Sbjct: 67  AAVLICWVLVGYRMAFGDQLLPFWAKGAPSLGQKFLINRAKVPESTHFHDGGLIETPTVE 126

Query: 126 PFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGF 185
           PFY M +LVYFQFTFAAIT++LLAGSVLGRMNI+AWMAFVPLWL+FSYTVGAFSLWGGGF
Sbjct: 127 PFYPMVSLVYFQFTFAAITLVLLAGSVLGRMNIKAWMAFVPLWLLFSYTVGAFSLWGGGF 186

Query: 186 LYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGW 245
           LY WGVIDYSGGYVIH+SSGIAG TAAYWVGPRLKSD+ERFPPNNVLLML GAG+LWMGW
Sbjct: 187 LYHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRLKSDRERFPPNNVLLMLCGAGMLWMGW 246

Query: 246 SGFNGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCI 305
           SGFNGGAPYAA++ + IA+LNTN+ AATSLLVWT LDV+FFGKPSVIGAVQGMMTGLVCI
Sbjct: 247 SGFNGGAPYAANVIAPIAVLNTNICAATSLLVWTSLDVVFFGKPSVIGAVQGMMTGLVCI 306

Query: 306 TPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLL 365
           TPGAGLVQSWAAI+MGILSGSIPWV+MM+LHKK +LLQ+VDDTL VFHTHAV GLLGGLL
Sbjct: 307 TPGAGLVQSWAAILMGILSGSIPWVSMMVLHKKSTLLQKVDDTLGVFHTHAVAGLLGGLL 366

Query: 366 TGLFAEPQLCKLTLP-EPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIF 424
           TGL AEP LC+L LP   +RGAFYGG GG+QFLKQ+VGA+FVIAWN+VSTTIILLAIR+F
Sbjct: 367 TGLLAEPALCRLILPVGNSRGAFYGGNGGMQFLKQLVGAMFVIAWNIVSTTIILLAIRVF 426

Query: 425 IPLRMPEEQLAIGDDAVHGEEAYALWGDGEKYDPRKHGWHGSSYSEDIAPSPYVNGARGV 484
           IPLRMPEEQL IGDDAVHGEEAYALWGDGEKYDP +HG + + Y E++APSPYVNGARGV
Sbjct: 427 IPLRMPEEQLNIGDDAVHGEEAYALWGDGEKYDPTRHGRNTAVYGEEMAPSPYVNGARGV 486

Query: 485 TINL 488
           TINL
Sbjct: 487 TINL 490

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|373501953|gb|AEY75249.1| ammonium transporter [Malus hupehensis] Back     alignment and taxonomy information
>gi|224091028|ref|XP_002309151.1| ammonium transporter [Populus trichocarpa] gi|222855127|gb|EEE92674.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255579286|ref|XP_002530488.1| ammonium transporter, putative [Ricinus communis] gi|223529945|gb|EEF31872.1| ammonium transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224140459|ref|XP_002323600.1| ammonium transporter [Populus trichocarpa] gi|222868230|gb|EEF05361.1| ammonium transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357506079|ref|XP_003623328.1| Ammonium transporter 3 member [Medicago truncatula] gi|355498343|gb|AES79546.1| Ammonium transporter 3 member [Medicago truncatula] Back     alignment and taxonomy information
>gi|356521048|ref|XP_003529170.1| PREDICTED: ammonium transporter 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356496235|ref|XP_003516974.1| PREDICTED: ammonium transporter 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356568134|ref|XP_003552268.1| PREDICTED: ammonium transporter 2-like [Glycine max] Back     alignment and taxonomy information
>gi|15799272|gb|AAL08212.1| putative ammonium transporter AMT2 [Lotus japonicus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
TAIR|locus:2042917475 AMT2 "ammonium transporter 2" 0.965 0.991 0.698 2.8e-185
UNIPROTKB|Q84KJ7486 AMT2-1 "Ammonium transporter 2 0.975 0.979 0.701 6.3e-179
TIGR_CMR|CHY_0073438 CHY_0073 "ammonium transporter 0.651 0.726 0.355 1.3e-57
UNIPROTKB|P69681428 amtB "AmtB" [Escherichia coli 0.616 0.703 0.350 4.7e-50
TIGR_CMR|CPS_3995445 CPS_3995 "ammonium transporter 0.627 0.687 0.340 7.7e-50
TIGR_CMR|DET_1125408 DET_1125 "ammonium transporter 0.819 0.980 0.316 1.9e-44
TIGR_CMR|SPO_2093431 SPO_2093 "ammonium transporter 0.641 0.726 0.313 2.3e-44
TIGR_CMR|GSU_0940489 GSU_0940 "ammonium transporter 0.848 0.846 0.300 3.6e-41
DICTYBASE|DDB_G0277503463 amtA "ammonium transporter" [D 0.831 0.876 0.280 3.7e-39
POMBASE|SPCPB1C11.01497 amt1 "ammonium transporter Amt 0.823 0.808 0.294 7.8e-39
TAIR|locus:2042917 AMT2 "ammonium transporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1797 (637.6 bits), Expect = 2.8e-185, P = 2.8e-185
 Identities = 336/481 (69%), Positives = 390/481 (81%)

Query:     9 AYQQELPAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAF 68
             AY   LP VP+WLNKGD+AWQ+TA+TLVG+QSMPGL+I+YASIVKKKWAVNSAFM LYAF
Sbjct:     4 AYDPSLPEVPEWLNKGDNAWQLTAATLVGLQSMPGLVILYASIVKKKWAVNSAFMALYAF 63

Query:    69 AAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFY 128
             AAVL+CWVL+CY+MAFG++LLPFWGKG PA  Q YL G+A++P S            P++
Sbjct:    64 AAVLLCWVLLCYKMAFGEELLPFWGKGGPAFDQGYLKGQAKIPNSN--------VAAPYF 115

Query:   129 AMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQ 188
              MATLVYFQFTFAAIT IL+AGSVLGRMNI+AWMAFVPLWL+FSYTVGA+S+WGGGFLYQ
Sbjct:   116 PMATLVYFQFTFAAITTILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWGGGFLYQ 175

Query:   189 WGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGF 248
             WGVIDYSGGYVIH+SSG+AG  AAYWVGPR K+D+ERFPPNNV              SGF
Sbjct:   176 WGVIDYSGGYVIHLSSGVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGLLWMGWSGF 235

Query:   249 NGGAPYAAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPG 308
             NGGAPYAA++ SSIA+LNTN++AATSLLVWT LDVIFFGKPSVIGA+QGM+TGL  +TPG
Sbjct:   236 NGGAPYAANLTSSIAVLNTNLSAATSLLVWTTLDVIFFGKPSVIGAIQGMVTGLAGVTPG 295

Query:   309 AGLVQSWAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXX 368
             AGL+Q+WAAI++G++SG+ PW +MMI+HKK +LLQ+VDDTLAVF+THAV           
Sbjct:   296 AGLIQTWAAIIIGVVSGTAPWASMMIIHKKSALLQKVDDTLAVFYTHAVAGLLGGIMTGL 355

Query:   369 FAEPQLCKLTLPEP-TRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPL 427
             FA P LC L LP P TRGAFYGG GG Q LKQ+ GA F+  WN+VSTTIILLAIR+FIPL
Sbjct:   356 FAHPDLCVLVLPLPATRGAFYGGNGGKQLLKQLAGAAFIAVWNVVSTTIILLAIRVFIPL 415

Query:   428 RMPEEQLAIGDDAVHGEEAYALWGDGEKYDPRKHGWHGSSYSEDIAPSPYVNGARGVTIN 487
             RM EE+L IGDDA HGEEAYALWGDGEK+D  +H        E   PS YV+GARGVTI 
Sbjct:   416 RMAEEELGIGDDAAHGEEAYALWGDGEKFDATRHVQQFERDQEAAHPS-YVHGARGVTIV 474

Query:   488 L 488
             L
Sbjct:   475 L 475
GO:0005737 "cytoplasm" evidence=ISM
GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS
GO:0015695 "organic cation transport" evidence=ISS;IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0015398 "high affinity secondary active ammonium transmembrane transporter activity" evidence=IDA
GO:0015696 "ammonium transport" evidence=RCA;TAS
GO:0009624 "response to nematode" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0000165 "MAPK cascade" evidence=RCA
GO:0002237 "response to molecule of bacterial origin" evidence=RCA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0006820 "anion transport" evidence=RCA
GO:0006862 "nucleotide transport" evidence=RCA
GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA
GO:0006944 "cellular membrane fusion" evidence=RCA
GO:0006995 "cellular response to nitrogen starvation" evidence=RCA
GO:0007154 "cell communication" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009581 "detection of external stimulus" evidence=RCA
GO:0009595 "detection of biotic stimulus" evidence=RCA
GO:0009627 "systemic acquired resistance" evidence=RCA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009749 "response to glucose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
GO:0015802 "basic amino acid transport" evidence=RCA
GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA
GO:0031347 "regulation of defense response" evidence=RCA
GO:0031348 "negative regulation of defense response" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
GO:0043069 "negative regulation of programmed cell death" evidence=RCA
GO:0043090 "amino acid import" evidence=RCA
GO:0043269 "regulation of ion transport" evidence=RCA
GO:0043900 "regulation of multi-organism process" evidence=RCA
GO:0050832 "defense response to fungus" evidence=RCA
GO:0051707 "response to other organism" evidence=RCA
UNIPROTKB|Q84KJ7 AMT2-1 "Ammonium transporter 2 member 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_0073 CHY_0073 "ammonium transporter" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
UNIPROTKB|P69681 amtB "AmtB" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3995 CPS_3995 "ammonium transporter" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1125 DET_1125 "ammonium transporter" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_2093 SPO_2093 "ammonium transporter" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0940 GSU_0940 "ammonium transporter" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0277503 amtA "ammonium transporter" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
POMBASE|SPCPB1C11.01 amt1 "ammonium transporter Amt1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q851M9AMT32_ORYSJNo assigned EC number0.70120.93640.9540nono
Q69T29AMT33_ORYSJNo assigned EC number0.70530.94260.9583nono
Q9M6N7AMT2_ARATHNo assigned EC number0.74420.96510.9915yesno
Q9C0V1AMT1_SCHPONo assigned EC number0.31350.82990.8148yesno
P63520AMT_MYCBONo assigned EC number0.31840.8750.8951yesno
Q07429NRGA_BACSUNo assigned EC number0.33640.81760.9876yesno
O66515AMT_AQUAENo assigned EC number0.36590.81760.9432yesno
P63519AMT_MYCTUNo assigned EC number0.31840.8750.8951yesno
Q84KJ6AMT31_ORYSJNo assigned EC number0.72060.94050.9216yesno
Q84KJ7AMT21_ORYSJNo assigned EC number0.74220.97540.9794nono
O26759Y663_METTHNo assigned EC number0.35690.83810.9927yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
TIGR00836403 TIGR00836, amt, ammonium transporter 1e-117
COG0004409 COG0004, AmtB, Ammonia permease [Inorganic ion tra 1e-104
pfam00909399 pfam00909, Ammonium_transp, Ammonium Transporter F 2e-66
PRK10666428 PRK10666, PRK10666, ammonium transporter; Provisio 2e-65
TIGR03644404 TIGR03644, marine_trans_1, probable ammonium trans 1e-32
>gnl|CDD|233145 TIGR00836, amt, ammonium transporter Back     alignment and domain information 
 Score =  350 bits (901), Expect = e-117
 Identities = 154/425 (36%), Positives = 223/425 (52%), Gaps = 27/425 (6%)

Query: 27  AWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGD 86
           AW + A+ LV     PG  ++YA +V+ K  +N     L  FA   + W L  Y +AFG+
Sbjct: 2   AWLLIAAALVFFM-QPGFALLYAGLVRSKNVLNIMMKNLLDFAIGSLLWWLFGYSLAFGE 60

Query: 87  QLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVI 146
              P  G      G   L                 ++            FQ  FAAI   
Sbjct: 61  DN-PINGFIGT--GGFGLKNFL---------YPGKISLAGTLPDLLFFLFQMMFAAIAAT 108

Query: 147 LLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWG-GGFLYQWGVIDYSGGYVIHVSSG 205
           +++G+V  RM   A++ F  LW    Y   A  +WG GG+LY+ GV+D++GG V+H+  G
Sbjct: 109 IISGAVAERMKFSAYLLFSVLWTTLVYPPVAHWVWGGGGWLYKLGVLDFAGGGVVHIVGG 168

Query: 206 IAGLTAAYWVGPRLKSDKE--RFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASSIA 263
           +AGL AA  +GPR+          P+NV L++ G  +LW GW GFN G+  AA+  ++ A
Sbjct: 169 VAGLAAALVLGPRIGRFPRPVAIRPHNVPLVVLGTFILWFGWFGFNAGSALAANGTAAYA 228

Query: 264 ILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGIL 323
            +NTN+AAA   L W  +D +  GKP+++GA  G++ GLV ITPG G+V  W AI++G++
Sbjct: 229 AVNTNLAAAAGGLTWLLIDWLKHGKPTLLGACNGILAGLVAITPGCGVVTPWGAIIIGLV 288

Query: 324 SGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPT 383
           +G + ++ +  L KK     ++DD L  F  H V G+ G + TGLFA P++  +      
Sbjct: 289 AGVLCYLAVSKLKKK----LKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGT---- 340

Query: 384 RGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIGDD-AVH 442
            G   GG  G Q   Q++G   +IAW  V T IIL  +   I LR+ EE+  IG D A H
Sbjct: 341 -GGLLGG-NGKQLGVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEH 398

Query: 443 GEEAY 447
           GE AY
Sbjct: 399 GEFAY 403

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403
>gnl|CDD|223083 COG0004, AmtB, Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family Back     alignment and domain information
>gnl|CDD|182630 PRK10666, PRK10666, ammonium transporter; Provisional Back     alignment and domain information
>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 488
COG0004409 AmtB Ammonia permease [Inorganic ion transport and 100.0
KOG0682500 consensus Ammonia permease [Inorganic ion transpor 100.0
PRK10666428 ammonium transporter; Provisional 100.0
TIGR00836403 amt ammonium transporter. The mechanism of energy 100.0
TIGR03644404 marine_trans_1 probable ammonium transporter, mari 100.0
PF00909399 Ammonium_transp: Ammonium Transporter Family; Inte 100.0
KOG3796442 consensus Ammonium transporter RHBG [Intracellular 100.0
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.2e-107  Score=834.97  Aligned_cols=403  Identities=39%  Similarity=0.714  Sum_probs=371.3

Q ss_pred             ccccchHHHHHHHHHHHHHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccchh
Q 011335           21 LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALG  100 (488)
Q Consensus        21 ~~~~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~~~  100 (488)
                      +|++|+.|+|+|+.|| ++|||||+++|+|++|+||++|+++|+++++++++++|+++||+++||++.++|+|+...+  
T Consensus         1 ~~~~d~~wml~sa~LV-~lMtpGlalfy~Gl~R~Kn~ln~~m~~~~~~~i~~~~w~~~Gyslafg~~~~~~iG~~~~~--   77 (409)
T COG0004           1 MDSGDTAWMLLSAALV-LLMTPGLALFYGGLVRKKNVLNTLMQSFVAFAIVTLLWIFVGYSLAFGPDGNGFIGNLDQF--   77 (409)
T ss_pred             CCcccHHHHHHHHHHH-HHHhhHHHHHHhhHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhheecCCCCcccCCHHHH--
Confidence            3678999999999999 9999999999999999999999999999999999999999999999998667899986421  


Q ss_pred             hhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhccccee
Q 011335          101 QKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSL  180 (488)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwv  180 (488)
                         +++.......    .+     ..++|...+++||++||++|++|++|+++||+|+.+|++|+++|.+++|||++||+
T Consensus        78 ---~~~~~~~~~~----~~-----~~~ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw~~~vY~p~ahWv  145 (409)
T COG0004          78 ---FLNGLGFAAV----AG-----GAGIPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLWSTLVYPPVAHWV  145 (409)
T ss_pred             ---hccCcccccc----CC-----cccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhheeE
Confidence               1111100000    01     13589999999999999999999999999999999999999999999999999999


Q ss_pred             e-ccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchh
Q 011335          181 W-GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA  259 (488)
Q Consensus       181 W-~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~  259 (488)
                      | ++|||.++|++|||||+|||..+|+.||++++++|||+++.+++++|||++++++|+.+||+||+|||+||+++.+.+
T Consensus       146 Wggggwl~~~g~~DFAGgtVVHi~aG~aaLa~a~~lG~R~g~~~~~~~pHNl~~~~lGa~lLWfGWfGFN~GSal~~~~~  225 (409)
T COG0004         146 WGGGGWLALLGALDFAGGTVVHINAGFAALAAALVLGKRIGGKPVAIPPHNLPLVVLGAALLWFGWFGFNAGSALAANGV  225 (409)
T ss_pred             ecCchHHHhcCceecCCCceEEechhHHHHHHHHHeecccCCCCCCCCCCchhHHHHHHHHHHHHHccCCccchhhhhhh
Confidence            9 566999999999999999999999999999999999999888999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhh
Q 011335          260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKC  339 (488)
Q Consensus       260 ~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l  339 (488)
                      +..+++||++|+++++++|++++|+++||+|+..+|||++||||+|||+|++|+||+|++||+++|++|+++.++++|+ 
T Consensus       226 a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~sG~vAGLVaITpaag~V~p~~A~iiGii~g~i~~~a~~~lk~~-  304 (409)
T COG0004         226 AALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAASGAVAGLVAITPAAGFVSPWGALIIGLIAGVICYFAVKLLKKK-  304 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhhHHHhHHHhcCCcccccCcHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999888775 


Q ss_pred             ccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011335          340 SLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILL  419 (488)
Q Consensus       340 ~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~~  419 (488)
                         +|+|||+|++++||++|+||+|++|+|++++..      ...|.+|+  +.+|++.|+.+++++.+|++++++++++
T Consensus       305 ---l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~~------~~~G~~~~--~~~~l~~Q~~~v~~~~~~~~v~t~ii~~  373 (409)
T COG0004         305 ---LGVDDALDVFGVHGVGGIVGAILTGIFAAPAVG------GGGGLFYG--GGVQLGVQLLGVLVTIVYAFVVTFIILK  373 (409)
T ss_pred             ---cCCCCcccceeccchhhHHHHHHHHHhcCcccc------ccCccccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               699999999999999999999999999998641      12355553  6899999999999999999999999999


Q ss_pred             HHHHhcCCCCChHHhhcC-ChhhhCccccccc
Q 011335          420 AIRIFIPLRMPEEQLAIG-DDAVHGEEAYALW  450 (488)
Q Consensus       420 ~l~~~~~lRvs~e~E~~G-D~~~hg~~ay~~~  450 (488)
                      ++|++.+||||||||++| |.+||||++|++.
T Consensus       374 vl~~~~gLRvs~eeE~~GlD~~~Hge~aY~~~  405 (409)
T COG0004         374 VLKLIIGLRVSEEEELEGLDISEHGESAYSEE  405 (409)
T ss_pred             HHHhccCCCCCHHHHhhCCChHHhcccccccc
Confidence            999999999999999999 9999999999874

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10666 ammonium transporter; Provisional Back     alignment and domain information
>TIGR00836 amt ammonium transporter Back     alignment and domain information
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype Back     alignment and domain information
>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix Back     alignment and domain information
>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
1xqe_A418 The Mechanism Of Ammonia Transport Based On The Cry 3e-44
2nmr_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 3e-44
2ns1_A412 Crystal Structure Of The E. Coli Ammonia Channel Am 3e-44
2nuu_A415 Regulating The Escherichia Coli Ammonia Channel: Th 2e-43
2now_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 2e-43
3c1i_A424 Substrate Binding, Deprotonation And Selectivity At 3e-43
3c1h_A424 Substrate Binding, Deprotonation And Selectivity At 3e-43
2npd_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 4e-43
2npg_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 4e-43
2npc_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 5e-43
2npe_A424 An Unusual Twin-his Arrangement In The Pore Of Ammo 5e-43
3c1j_A424 Substrate Binding, Deprotonation And Selectivity At 4e-42
2npk_A424 An Unusual Twin-His Arrangement In The Pore Of Ammo 6e-42
1u77_A385 Crystal Structure Of Ammonia Channel Amtb From E. C 3e-36
2b2f_A399 Ammonium Transporter Amt-1 From A.Fulgidus (Native) 9e-35
>pdb|1XQE|A Chain A, The Mechanism Of Ammonia Transport Based On The Crystal Structure Of Amtb Of E. Coli. Length = 418 Back     alignment and structure 
Iteration: 1

 Score =  176 bits (446), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/434 (30%), Positives = 204/434 (47%), Gaps = 32/434 (7%)
Query: 15  PAVPDWLNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLIC 74
           PAV D   K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I 
Sbjct: 2   PAVAD---KADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCIL 58
Query: 75  WVLVCYRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLV 134
           WV+  Y +AFG+             G  +      +     E+     +   +  +A   
Sbjct: 59  WVVYGYSLAFGE-------------GNNFFGNINWLMLKNIELTAVMGSIYQYIHVA--- 102
Query: 135 YFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDY 194
            FQ +FA ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D+
Sbjct: 103 -FQGSFACITVGLIVGALAERIRFSAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDF 161
Query: 195 SGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVXXXXXXXXXXXXXXSGFNGGAPY 254
           +GG V+H+++ IAGL  AY +G R+   KE F P+N+               GFN G+  
Sbjct: 162 AGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAG 221
Query: 255 AAHIASSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQS 314
            A+  +++A +NT VA A ++L W   +    GKPS++GA  G + GLV +TP  G +  
Sbjct: 222 TANEIAALAFVNTVVATAAAILGWIFGEWALRGKPSLLGACSGAIAGLVGVTPACGYIGV 281
Query: 315 WAAIVMGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVXXXXXXXXXXXFAEPQL 374
             A+++G+++G      + +L +    L +VDD   VF  H V           FA   L
Sbjct: 282 GGALIIGVVAGLAGLWGVTMLKR----LLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSL 337
Query: 375 CKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQL 434
             +   E       G   G Q L Q+      I W+ V   I      + + LR+PEEQ 
Sbjct: 338 GGVGFAE-------GVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRVPEEQE 390
Query: 435 AIGDDA-VHGEEAY 447
             G D   HGE AY
Sbjct: 391 REGLDVNSHGENAY 404
>pdb|2NMR|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NS1|A Chain A, Crystal Structure Of The E. Coli Ammonia Channel Amtb Complexed With The Signal Transduction Protein Glnk Length = 412 Back     alignment and structure
>pdb|2NUU|A Chain A, Regulating The Escherichia Coli Ammonia Channel: The Crystal Structure Of The Amtb-glnk Complex Length = 415 Back     alignment and structure
>pdb|2NOW|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1I|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|3C1H|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPD|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPG|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPC|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|2NPE|A Chain A, An Unusual Twin-his Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|3C1J|A Chain A, Substrate Binding, Deprotonation And Selectivity At The Periplasmic Entrance Of The E. Coli Ammonia Channel Amtb Length = 424 Back     alignment and structure
>pdb|2NPK|A Chain A, An Unusual Twin-His Arrangement In The Pore Of Ammonia Channels Is Essential For Substrate Conductance Length = 424 Back     alignment and structure
>pdb|1U77|A Chain A, Crystal Structure Of Ammonia Channel Amtb From E. Coli Length = 385 Back     alignment and structure
>pdb|2B2F|A Chain A, Ammonium Transporter Amt-1 From A.Fulgidus (Native) Length = 399 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 1e-107
1u7g_A385 Probable ammonium transporter; right handed helica 1e-101
3b9w_A407 Ammonium transporter family; membrane protein, amm 3e-72
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 1e-56
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Length = 399 Back     alignment and structure
 Score =  323 bits (829), Expect = e-107
 Identities = 128/438 (29%), Positives = 216/438 (49%), Gaps = 41/438 (9%)

Query: 21  LNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVC 79
           ++ G+ AW + ++ LV +  M PG+   YA +V++K AVN   +   +    ++ W+   
Sbjct: 1   MSDGNVAWILASTALVML--MVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYG 58

Query: 80  YRMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFT 139
           Y ++FG+ +    G     L    L G  +  +                     + +Q  
Sbjct: 59  YSVSFGNDISGIIG----GLNYALLSG-VKGEDLLF------------------MMYQMM 95

Query: 140 FAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYV 199
           FAA+T+ +L  ++  R  + +++    LWL F Y   A  LWGGG+L + G +D++GG V
Sbjct: 96  FAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLWGGGWLAKLGALDFAGGMV 155

Query: 200 IHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA 259
           +H+SSG A L  A  +G R   ++    P+++ L L GA LLW GW GFNGG+  AA+  
Sbjct: 156 VHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDV 215

Query: 260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIV 319
           +  A++ TN +AA +  VW  +  I  GKP  +G V G + GL  ITP AG V    AIV
Sbjct: 216 AINAVVVTNTSAAVAGFVWMVIGWI-KGKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIV 274

Query: 320 MGILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTL 379
           +G+++G + ++ M    KK     ++D++L  +  H + GL G +  G+ A P++     
Sbjct: 275 IGLVAGIVCYLAMDFRIKK-----KIDESLDAWAIHGIGGLWGSVAVGILANPEV----- 324

Query: 380 PEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRMPEEQLAIG-D 438
                G  +G       + Q++      A+  + T I+  A+   + LR+  ++  +G D
Sbjct: 325 -NGYAGLLFG--NPQLLVSQLIAVASTTAYAFLVTLILAKAVDAAVGLRVSSQEEYVGLD 381

Query: 439 DAVHGEEAYALWGDGEKY 456
            + H E AY L      +
Sbjct: 382 LSQHEEVAYTLEHHHHHH 399
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Length = 385 Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407 Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Length = 490 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
2b2h_A399 AMT-1, ammonium transporter; membrane protein, tra 100.0
1u7g_A385 Probable ammonium transporter; right handed helica 100.0
3b9w_A407 Ammonium transporter family; membrane protein, amm 100.0
3hd6_A490 Ammonium transporter RH type C; ammonia, channel, 100.0
>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A Back     alignment and structure
Probab=100.00  E-value=7.9e-107  Score=842.71  Aligned_cols=392  Identities=32%  Similarity=0.608  Sum_probs=361.8

Q ss_pred             cccchHHHHHHHHHHHHHhhHHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccchhh
Q 011335           22 NKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPALGQ  101 (488)
Q Consensus        22 ~~~d~~w~L~~~~lV~~~m~~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~~~~  101 (488)
                      |+.|+.|+|+|++|| ++|||||+++|+|+||+||++|+++||++++++++++||++||+++||++.++|+|+.+.+   
T Consensus         2 ~~~d~~w~l~~~~LV-~~M~~Gfa~~~~G~vR~KN~~n~l~k~~~~~~i~~i~w~~~Gy~lafg~~~~~~iG~~~~~---   77 (399)
T 2b2h_A            2 SDGNVAWILASTALV-MLMVPGVGFFYAGMVRRKNAVNMIALSFISLIITVLLWIFYGYSVSFGNDISGIIGGLNYA---   77 (399)
T ss_dssp             CHHHHHHHHHHHHHH-HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSEETTTEECSTTG---
T ss_pred             CcccHHHHHHHHHHH-HHHHHHHHHHhcccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCCchHh---
Confidence            568999999999999 9999999999999999999999999999999999999999999999998667899974321   


Q ss_pred             hhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccceee
Q 011335          102 KYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLW  181 (488)
Q Consensus       102 ~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahwvW  181 (488)
                        ++...                + .- ...+++||++||++|++|++||++||+|+.+|++|+++|++++|||++||+|
T Consensus        78 --~~~~~----------------~-~~-~~~~~~Fq~~Faa~t~~IvsGAvaeR~kf~a~lif~~l~~~~vY~~~ahwvW  137 (399)
T 2b2h_A           78 --LLSGV----------------K-GE-DLLFMMYQMMFAAVTIAILTSAIAERAKVSSFILLSALWLTFVYAPFAHWLW  137 (399)
T ss_dssp             --GGTTC----------------C-TH-HHHHHHHHHHHHHHHHHHHGGGGTTTBCHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             --hccCC----------------C-CC-chhHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHHHHhhhhhhheE
Confidence              11100                0 01 2678999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchhhH
Q 011335          182 GGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIASS  261 (488)
Q Consensus       182 ~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~~~  261 (488)
                      ++|||.++|++|||||+|||++||++||++++++|||+++++++++|||++++++|+++||+||||||+||++..+..+.
T Consensus       138 ~~GwL~~lG~~DFAGs~vVH~~gG~~aL~~a~~LG~R~g~~~~~~~~hn~~~~~lG~~lLW~GWfGFN~GS~l~~~~~a~  217 (399)
T 2b2h_A          138 GGGWLAKLGALDFAGGMVVHISSGFAALAVAMTIGKRAGFEEYSIEPHSIPLTLIGAALLWFGWFGFNGGSALAANDVAI  217 (399)
T ss_dssp             SSCHHHHTTCCCSSCTTTTHHHHHHHHHHHHHHHCCCTTTTTSCCCCSCHHHHHHHHHHHHHHHHHHHHGGGSSSSHHHH
T ss_pred             CchhHHhcCCccccCCeEEEechhHHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhcHHhhccccchhh
Confidence            99999999999999999999999999999999999999988889999999999999999999999999999998888899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhhcc
Q 011335          262 IAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKCSL  341 (488)
Q Consensus       262 ~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l~~  341 (488)
                      ++++||++|+++|+++|+++++++ ||+|+.+++||+|||||||||+|++++||+|++||+++|++|++++ .+++    
T Consensus       218 ~a~~nT~lAaaag~l~~~~~~~~~-gk~~~~~~~nG~lAGLVaITa~~~~v~p~~A~iiG~iag~i~~~~~-~l~~----  291 (399)
T 2b2h_A          218 NAVVVTNTSAAVAGFVWMVIGWIK-GKPGSLGIVSGAIAGLAAITPAAGFVDVKGAIVIGLVAGIVCYLAM-DFRI----  291 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHHHHHHH-HHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhhccccccCCHHHHHHHHHHHHHHHHHHH-HHHH----
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999988 3333    


Q ss_pred             ccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011335          342 LQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAI  421 (488)
Q Consensus       342 ~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~~~l  421 (488)
                      |+|||||||++++||+||+||++++|+|++++..+      .+|++|+  +..|++.|++|++++++|+++.++++++++
T Consensus       292 kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g------~~Gl~~g--~~~ql~~Ql~g~~~~~~~~~v~~~i~~~il  363 (399)
T 2b2h_A          292 KKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNG------YAGLLFG--NPQLLVSQLIAVASTTAYAFLVTLILAKAV  363 (399)
T ss_dssp             HTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHS------CCCGGGT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCCCCCCceeccchhhHHHHHHHHHHccccccC------CCccccC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999876421      2478885  579999999999999999999999999999


Q ss_pred             HHhcCCCCChHHhhcC-ChhhhCcccccccc
Q 011335          422 RIFIPLRMPEEQLAIG-DDAVHGEEAYALWG  451 (488)
Q Consensus       422 ~~~~~lRvs~e~E~~G-D~~~hg~~ay~~~~  451 (488)
                      |++.+||++||||++| |.+||||++|++.+
T Consensus       364 ~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~  394 (399)
T 2b2h_A          364 DAAVGLRVSSQEEYVGLDLSQHEEVAYTLEH  394 (399)
T ss_dssp             HHHTCSBCCHHHHHHCHHHHHHCCCSCC---
T ss_pred             HhcccCCCCHHHHHhCCCHHHhCcccCCccc
Confidence            9999999999999999 99999999998743
>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A Back     alignment and structure
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Back     alignment and structure
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 488
d1u7ga_383 f.44.1.1 (A:) Ammonium transporter AmtB {Escherich 2e-59
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Length = 383 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

 Score =  198 bits (504), Expect = 2e-59
 Identities = 125/409 (30%), Positives = 200/409 (48%), Gaps = 28/409 (6%)

Query: 21  LNKGDSAWQMTASTLVGIQSMPGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCY 80
            +K D+A+ M  + LV   ++PG+ + Y  +++ K  ++    V   FA V I WV+  Y
Sbjct: 3   ADKADNAFMMICTALVLFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGY 62

Query: 81  RMAFGDQLLPFWGKGAPALGQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTF 140
            +A G+    F       L    L                             V FQ +F
Sbjct: 63  SLASGEGNNFFGNINWLMLKNIELTAVM-----------------GSIYQYIHVAFQGSF 105

Query: 141 AAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFSLWGGGFLYQWGVIDYSGGYVI 200
           A ITV L+ G++  R+   A + FV +WL  SY   A  +WGGG L   G +D++GG V+
Sbjct: 106 ACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHMVWGGGLLASHGALDFAGGTVV 165

Query: 201 HVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIAS 260
           H+++ IAGL  AY +G R+   KE F P+N+ ++  G  +L++GW GFN G+   A+  +
Sbjct: 166 HINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEIA 225

Query: 261 SIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVM 320
           ++A +NT VA A ++L W   +    G PS++GA  G + GLV +TP  G +    A+++
Sbjct: 226 ALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALII 285

Query: 321 GILSGSIPWVTMMILHKKCSLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLP 380
           G+++G      + +L +      +VDD   VF  H V G++G ++TG+FA   L  +   
Sbjct: 286 GVVAGLAGLWGVTMLKRLL----RVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGV--- 338

Query: 381 EPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILLAIRIFIPLRM 429
               G   G   G Q L Q+      I W+ V   I      + + LR+
Sbjct: 339 ----GFAEGVTMGHQLLVQLESIAITIVWSGVVAFIGYKLADLTVGLRV 383

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
d1u7ga_383 Ammonium transporter AmtB {Escherichia coli [TaxId 100.0
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.3e-91  Score=726.36  Aligned_cols=380  Identities=32%  Similarity=0.557  Sum_probs=345.6

Q ss_pred             ccccchHHHHHHHHHHHHHhh-HHHhhhcccccccccHHHHHHHHHHHHHHHHHHHHhhchhhcccCCCCCcccCCccch
Q 011335           21 LNKGDSAWQMTASTLVGIQSM-PGLLIIYASIVKKKWAVNSAFMVLYAFAAVLICWVLVCYRMAFGDQLLPFWGKGAPAL   99 (488)
Q Consensus        21 ~~~~d~~w~L~~~~lV~~~m~-~GfalleaG~Vr~kn~~~~l~~~~~~~~i~~i~~~~~Gy~laFG~~~~~fiG~~~~~~   99 (488)
                      .|+.|+.|+|+|++|| ++|| |||+++|+|+||+||++|+++||++++++++++||++||++|||++ ++++|...++.
T Consensus         3 ~d~~d~~~~l~~~~lV-~~m~~~Gf~lle~G~vr~kn~~~~~~k~~~~~~~~~i~~~~~Gy~lafg~~-~~~~g~~~~~~   80 (383)
T d1u7ga_           3 ADKADNAFMMICTALV-LFMTIPGIALFYGGLIRGKNVLSMLTQVTVTFALVCILWVVYGYSLASGEG-NNFFGNINWLM   80 (383)
T ss_dssp             CCHHHHHHHHHHHHHH-HHHHTTHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSC-SSSCCCSTTGG
T ss_pred             cCcccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHheeeEeEEeEcCCC-CCcCCCcchhh
Confidence            4678999999999999 7776 8999999999999999999999999999999999999999999987 46677654321


Q ss_pred             hhhhhcccCCCCCCccccCCccccCCcchhHHHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHhhhhcccce
Q 011335          100 GQKYLVGRARVPESTHEVDGKTVTTEPFYAMATLVYFQFTFAAITVILLAGSVLGRMNIRAWMAFVPLWLMFSYTVGAFS  179 (488)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~~fq~~Faa~a~~I~sGavaeR~~~~~~~i~~~l~~~~vY~v~ahw  179 (488)
                      .    .+.+  .+          ..+..+|.+.+++||++||+++++|++|+++||+|+++|++|+++|++++|||++||
T Consensus        81 ~----~~~~--~~----------~~~~~~~~~~~~~fq~~Fa~~a~~IvsGavaeR~~~~~~~i~~~~~~~~vy~~~~hw  144 (383)
T d1u7ga_          81 L----KNIE--LT----------AVMGSIYQYIHVAFQGSFACITVGLIVGALAERIRFPAVLIFVVVWLTLSYIPIAHM  144 (383)
T ss_dssp             G----TTCC--TT----------CEETTEEHHHHHHHHHHHHHHHHHHHHHHHGGGBCHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             c----cCcc--cc----------cccccchhhHHhHhhhhhhhhhccccccccccccceeEeeehhhHhhhhccchHHhe
Confidence            1    0000  00          012347789999999999999999999999999999999999999999999999999


Q ss_pred             eeccchhhcccceeccCCeeehhhhHHHHHHHHHHHccCCCCCCCCCCCCcHHHHHHHHHHHHHhhhhhcCCcccccchh
Q 011335          180 LWGGGFLYQWGVIDYSGGYVIHVSSGIAGLTAAYWVGPRLKSDKERFPPNNVLLMLAGAGLLWMGWSGFNGGAPYAAHIA  259 (488)
Q Consensus       180 vW~~GwL~~lG~~DfaG~~vVH~~gG~~gL~~a~~lG~R~~~~~~~~~~~s~~~~~lGt~lLw~gW~gFN~gs~~~~~~~  259 (488)
                      +|++|||+++|++|||||+|||++||+++|++++++|||++|++++.+|||++++.+|+++||+||+|||+||+...+..
T Consensus       145 vw~~g~l~~lG~~DfaGs~vVH~~gG~~aL~~~~~lgpR~~~~~~~~~~~~~~~~~lG~~iLw~gW~gFN~gs~~~~~~~  224 (383)
T d1u7ga_         145 VWGGGLLASHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPHNLPMVFTGTAILYIGWFGFNAGSAGTANEI  224 (383)
T ss_dssp             HHSSCHHHHHTCCCSSCTTTTHHHHHHHHHHHHHHSCCCCCTTCSSCCGGGHHHHHHHHHHHHHHHHHHHHGGGSSSSHH
T ss_pred             ecCCCccccCCceeccCceeeeecccHHHHHHHHhcCCcccccccccccCChhhhhHHHHHHHHHHHHhccccccccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhhhhhcccceeccCCCCcchHHHHHHHHhhhhHHHHHHHHHHhhh
Q 011335          260 SSIAILNTNVAAATSLLVWTCLDVIFFGKPSVIGAVQGMMTGLVCITPGAGLVQSWAAIVMGILSGSIPWVTMMILHKKC  339 (488)
Q Consensus       260 ~~~a~~NT~la~a~g~l~~~~~~~~~~~k~~~~~~~nG~LAGlVaIta~a~~v~pw~A~iiG~iag~i~~~~~~~l~~~l  339 (488)
                      ..++.+||++|+++++++++..+++.+||+|+.+++||+|||||+|||+|++++||+|++||+++|++|+++++++++| 
T Consensus       225 ~~~~~~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~~v~p~~A~~iG~i~g~i~~~~~~~l~~~-  303 (383)
T d1u7ga_         225 AALAFVNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACGYIGVGGALIIGVVAGLAGLWGVTMLKRL-  303 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCccccchhhHHHHHhhccHHHHHHHHHHHhh-
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999887654 


Q ss_pred             ccccccccccccccccchhhhHhhhhhhhccCccccccCCCCCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 011335          340 SLLQQVDDTLAVFHTHAVTGLLGGLLTGLFAEPQLCKLTLPEPTRGAFYGGKGGVQFLKQIVGALFVIAWNLVSTTIILL  419 (488)
Q Consensus       340 ~~~l~IDD~~~v~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~Gl~~g~~~~~ql~~Ql~g~~v~~~ws~~~~~i~~~  419 (488)
                         +|||||||++++||+||+||++++|+|+.++..+..+.       .+...++|++.|++|++++++|+++.++++++
T Consensus       304 ---~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~~g~~~~-------~~~~~~~ql~~Ql~g~~v~~~~~~~~~~ii~~  373 (383)
T d1u7ga_         304 ---LRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFA-------EGVTMGHQLLVQLESIAITIVWSGVVAFIGYK  373 (383)
T ss_dssp             ---HCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCC-------TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cccccccceEeehhhhHHHHHHHHHHhcCccccccccc-------cccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               69999999999999999999999999998875432211       11235689999999999999999999999999


Q ss_pred             HHHHhcCCCC
Q 011335          420 AIRIFIPLRM  429 (488)
Q Consensus       420 ~l~~~~~lRv  429 (488)
                      ++||+.+|||
T Consensus       374 il~~~~gLRV  383 (383)
T d1u7ga_         374 LADLTVGLRV  383 (383)
T ss_dssp             HHHHHTCSBC
T ss_pred             HHHhCcCCcC
Confidence            9999999997