Citrus Sinensis ID: 011341

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------49
MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMVGSRS
cccccccccccHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHcHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHcHHEEEEEcccccccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHcccccccHHccEEEEEEEcccHHHHHHHHHHHcccccccccccccccccccccccccccEEEcccccEEEEEEccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEEEccccccHHHHHHHHcccccccccccccccccccEEEccccccccccccccccEEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccc
ccccccccEEcHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHccccccccEEEccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccHEEccccccccEEccEEEEccccccEEEEEEcHHHHHHHHHHHHEEHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHccccccccccccccEEEEEEEcccccEEEcccccccHHHHHHcccccccEEEEEcccccEEcEEEccEEccccccccccccEEEEEEccccccccccHHHHHHHHccccEEEEcHHHHHHHHHHcc
mrasgdpylLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNmmtldalplckrQRFAKETLEIFVPLANRLGISTWKVQLENLcfkhlnpdqhtELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEvpgkmkdyitrpkfngyqslhtvvtgeglvplEVQIRTKEMHLQAEFGFAAhwrykegdcqhsSFVLQMVEWARWVLTWQCeamskdrscvgngdsikppctfpshaddcpfsykpqcshdgpvFVIMIENdkmsvqefptsstVMDLLERagrgssrwspygfplkeelrprlnhkavgdprcklkmgdvveltpaipdkslTEYREEIQRMYERGlavsntgpavtsmvgsrs
MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQlsklarenntasktveadrLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAgrgssrwspygfplkeelrprlnhkavgdprcklkmgdvveltpaipdkslteYREEIQRMYerglavsntgpavtsmvgsrs
MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMVGSRS
*******YLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLS***************VEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKM***************************YGF**************VGDPRCKLKMGDVVELTPAI*************************************
MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARE******TVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWR****************EWARWVLTWQCEAMS***SCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPD***TEYREEIQRMYE**************MVG***
MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGP**********
****GDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAM**********DSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMV**RS
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MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAVTSMVGSRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query488 2.2.26 [Sep-21-2011]
P74007 760 Probable guanosine-3',5'- N/A no 0.672 0.431 0.455 1e-75
O87331 760 GTP pyrophosphokinase OS= yes no 0.668 0.428 0.432 5e-71
O54408 734 GTP pyrophosphokinase OS= yes no 0.672 0.446 0.410 5e-68
O52177 757 GTP pyrophosphokinase OS= yes no 0.657 0.424 0.413 4e-67
Q8CS97 729 GTP pyrophosphokinase OS= yes no 0.622 0.417 0.420 1e-66
Q5HNR8 729 GTP pyrophosphokinase OS= yes no 0.622 0.417 0.420 1e-66
P52560 847 GTP pyrophosphokinase OS= yes no 0.659 0.380 0.411 6e-66
P0AG26 702 Guanosine-3',5'-bis(dipho yes no 0.676 0.470 0.420 9e-66
P0AG24 702 Bifunctional (p)ppGpp syn N/A no 0.676 0.470 0.420 9e-66
P0AG25 702 Guanosine-3',5'-bis(dipho N/A no 0.676 0.470 0.420 9e-66
>sp|P74007|SPOT_SYNY3 Probable guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=spoT PE=3 SV=1 Back     alignment and function desciption
 Score =  284 bits (727), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 155/340 (45%), Positives = 215/340 (63%), Gaps = 12/340 (3%)

Query: 2   RASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVE 61
           R SG+PY+ H V  A LL  +G +  ++AAG LHD ++D  +S + I   FG   A LVE
Sbjct: 70  RKSGEPYIAHPVAVAGLLRDLGGDEAMIAAGFLHDVVEDTDISIEQIEALFGEETASLVE 129

Query: 62  GVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPL 120
           GV+KLS+       N +++   +A+    MFLAMA D R +++KLADRLHNM TLDAL  
Sbjct: 130 GVTKLSKF------NFSSTTEHQAENFRRMFLAMAKDIRVIVVKLADRLHNMRTLDALSP 183

Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFD--EAM 178
            K++R A+ET +IF PLANRLGI  +K +LE+L FK+L PD + ++ S +VE     E+ 
Sbjct: 184 EKQRRIARETKDIFAPLANRLGIWRFKWELEDLSFKYLEPDSYRKIQSLVVEKRGDRESR 243

Query: 179 VTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEE 238
           + +  + L   L+D+ I    L GR K LY I+ KM  +    +EI+DI  LR+IVE++ 
Sbjct: 244 LETVKDMLRFRLRDEGIEHFELQGRPKHLYGIYYKMTSQDKAFEEIYDIAALRIIVESKG 303

Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQA 298
           +CY+AL VVH ++  +PG+ KDYI  PK N YQSLHT V G    PLE+QIRT+EMH  A
Sbjct: 304 ECYRALSVVHDVFKPIPGRFKDYIGLPKPNRYQSLHTTVLGLTSRPLEIQIRTEEMHHVA 363

Query: 299 EFGFAAHWRYKEGDCQHSSFVLQMVE---WARWVLTWQCE 335
           E+G AAHW+YKE     ++ +    E   W R +L WQ +
Sbjct: 364 EYGIAAHWKYKESGGSENATLTSTDEKFTWLRQLLDWQSD 403
In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. This enzyme catalyzes the degradation of ppGpp into GDP. It may also be capable of catalyzing the synthesis of ppGpp.
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)
EC: 3EC: .EC: 1EC: .EC: 7EC: .EC: 2
>sp|O87331|RELA_CORGL GTP pyrophosphokinase OS=Corynebacterium glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025) GN=relA PE=3 SV=2 Back     alignment and function description
>sp|O54408|RELA_BACSU GTP pyrophosphokinase OS=Bacillus subtilis (strain 168) GN=relA PE=3 SV=3 Back     alignment and function description
>sp|O52177|RELA_MYXXA GTP pyrophosphokinase OS=Myxococcus xanthus GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q8CS97|RELA_STAES GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|Q5HNR8|RELA_STAEQ GTP pyrophosphokinase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P52560|RELA_STRCO GTP pyrophosphokinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=relA PE=3 SV=1 Back     alignment and function description
>sp|P0AG26|SPOT_SHIFL Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Shigella flexneri GN=spoT PE=3 SV=1 Back     alignment and function description
>sp|P0AG24|SPOT_ECOLI Bifunctional (p)ppGpp synthase/hydrolase SpoT OS=Escherichia coli (strain K12) GN=spoT PE=1 SV=1 Back     alignment and function description
>sp|P0AG25|SPOT_ECO57 Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase OS=Escherichia coli O157:H7 GN=spoT PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
255560615 608 guanosine-3',5'-bis(diphosphate) 3'-pyro 1.0 0.802 0.842 0.0
297742998535 unnamed protein product [Vitis vinifera] 1.0 0.912 0.838 0.0
225442114 724 PREDICTED: GTP pyrophosphokinase-like [V 1.0 0.674 0.838 0.0
347730539506 RelA/SpoT-like protein [Quercus suber] 0.993 0.958 0.825 0.0
356558920 715 PREDICTED: uncharacterized protein LOC10 1.0 0.682 0.825 0.0
33637487 718 RSH2 [Nicotiana tabacum] 0.993 0.675 0.817 0.0
356519788 714 PREDICTED: uncharacterized protein LOC10 1.0 0.683 0.821 0.0
224070802 737 predicted protein [Populus trichocarpa] 0.997 0.660 0.826 0.0
224054061 716 predicted protein [Populus trichocarpa] 0.961 0.655 0.844 0.0
15081594 721 RSH-like protein [Capsicum annuum] 1.0 0.676 0.805 0.0
>gi|255560615|ref|XP_002521321.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] gi|223539399|gb|EEF40989.1| guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  863 bits (2230), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/489 (84%), Positives = 444/489 (90%), Gaps = 1/489 (0%)

Query: 1   MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
           MRASGDPYL HCVETA+LLA IGANSTVVAAGLLHDTLDD+FLSYDYIFRTFGAGVADLV
Sbjct: 120 MRASGDPYLQHCVETAVLLAMIGANSTVVAAGLLHDTLDDSFLSYDYIFRTFGAGVADLV 179

Query: 61  EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 120
           EGVSKLS LSKLARENNTA KTVEADRLHTMFLAMADARAVLIKLADRLHNM TLDALPL
Sbjct: 180 EGVSKLSHLSKLARENNTADKTVEADRLHTMFLAMADARAVLIKLADRLHNMKTLDALPL 239

Query: 121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 180
            K+QRFAKETLEIF PLANRLGIS+WK QLENLCFKHLNPD+H +L+S+LVE FDEA+VT
Sbjct: 240 VKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPDKHRDLASRLVESFDEAVVT 299

Query: 181 SAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDC 240
           SA EKLEQALKD +IS+ VL GRHKSLYSI+CKMLKKKL MDEIHDI+GLRLIVENEEDC
Sbjct: 300 SATEKLEQALKDDDISYHVLSGRHKSLYSIYCKMLKKKLNMDEIHDIHGLRLIVENEEDC 359

Query: 241 YQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEF 300
           Y+ALRVVHQLW+EVPGK KDYI+RPKFNGYQSLHTVV  EG+VPLEVQIRTKEMHLQAE 
Sbjct: 360 YRALRVVHQLWSEVPGKFKDYISRPKFNGYQSLHTVVRAEGMVPLEVQIRTKEMHLQAEC 419

Query: 301 GFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHA 360
           GFAAHWRYKEGDC+HSSFVLQMVEWARW++TWQCE MSK RS VG+ DSIK PC FP+H+
Sbjct: 420 GFAAHWRYKEGDCKHSSFVLQMVEWARWIVTWQCETMSKYRSSVGHADSIKAPCAFPTHS 479

Query: 361 DDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLK 420
           DDCPFSYKP    DGPVF+IMIENDKMSVQEFP +ST+MDLL RAGRGSSRWSPYGFP+K
Sbjct: 480 DDCPFSYKPHRGQDGPVFIIMIENDKMSVQEFPANSTMMDLLVRAGRGSSRWSPYGFPVK 539

Query: 421 EELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGL-AVSNTGPA 479
           EELRPRLNH  + D  CKLKMGDVVELTPAIP+KSLTE REEIQRMY+RGL  VS+T  A
Sbjct: 540 EELRPRLNHMPLSDATCKLKMGDVVELTPAIPNKSLTECREEIQRMYDRGLNTVSSTATA 599

Query: 480 VTSMVGSRS 488
            + M G RS
Sbjct: 600 ASGMAGWRS 608

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297742998|emb|CBI35865.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442114|ref|XP_002273796.1| PREDICTED: GTP pyrophosphokinase-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|347730539|gb|AEP20477.1| RelA/SpoT-like protein [Quercus suber] Back     alignment and taxonomy information
>gi|356558920|ref|XP_003547750.1| PREDICTED: uncharacterized protein LOC100787301 [Glycine max] Back     alignment and taxonomy information
>gi|33637487|gb|AAQ23899.1| RSH2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|356519788|ref|XP_003528551.1| PREDICTED: uncharacterized protein LOC100789399 [Glycine max] Back     alignment and taxonomy information
>gi|224070802|ref|XP_002303242.1| predicted protein [Populus trichocarpa] gi|222840674|gb|EEE78221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224054061|ref|XP_002298089.1| predicted protein [Populus trichocarpa] gi|222845347|gb|EEE82894.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15081594|gb|AAK82651.1| RSH-like protein [Capsicum annuum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query488
TAIR|locus:2088262709 RSH2 "RELA/SPOT homolog 2" [Ar 0.983 0.677 0.812 1.2e-209
TAIR|locus:2014335715 RSH3 "RELA/SPOT homolog 3" [Ar 0.987 0.674 0.798 2.4e-209
TIGR_CMR|BA_4637 727 BA_4637 "GTP pyrophosphokinase 0.670 0.449 0.436 7.7e-70
UNIPROTKB|Q3A9Z8 716 relA "GTP pyrophosphokinase" [ 0.668 0.455 0.454 1.8e-69
TIGR_CMR|CHY_2223 716 CHY_2223 "GTP pyrophosphokinas 0.668 0.455 0.454 1.8e-69
TIGR_CMR|DET_0005 728 DET_0005 "GTP pyrophosphokinas 0.674 0.451 0.438 1.1e-64
TIGR_CMR|GSU_2236 716 GSU_2236 "GTP pyrophosphokinas 0.665 0.453 0.420 6e-64
UNIPROTKB|P0AG24 702 spoT "guanosine 3'-diphosphate 0.676 0.470 0.423 2.1e-61
UNIPROTKB|P66014 738 relA "Bifunctional (p)ppGpp sy 0.668 0.441 0.401 1.2e-60
TIGR_CMR|CPS_4973 703 CPS_4973 "guanosine-3,5-bis(di 0.678 0.470 0.422 3.1e-60
TAIR|locus:2088262 RSH2 "RELA/SPOT homolog 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2027 (718.6 bits), Expect = 1.2e-209, P = 1.2e-209
 Identities = 390/480 (81%), Positives = 420/480 (87%)

Query:     1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
             MRAS DPYL HCVETAMLLA IGANSTVV AGLLHDT+DD+F+SYDYI R FGAGVADLV
Sbjct:   226 MRASRDPYLQHCVETAMLLANIGANSTVVVAGLLHDTIDDSFMSYDYILRNFGAGVADLV 285

Query:    61 EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMADARAVLIKLADRLHNMMTLDALPL 120
             EGVSKLSQLSKLARENNTA KTVEADRLHTMFLAMADARAVLIKLADRLHNM TL AL  
Sbjct:   286 EGVSKLSQLSKLARENNTACKTVEADRLHTMFLAMADARAVLIKLADRLHNMKTLYALSP 345

Query:   121 CKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDEAMVT 180
              K+QRFAKETLEIF PLANRLGISTWKVQLENLCFKHL P+QH E+S+ L + FDEAM+T
Sbjct:   346 VKQQRFAKETLEIFAPLANRLGISTWKVQLENLCFKHLYPNQHNEMSTMLEDSFDEAMIT 405

Query:   181 SAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEEDC 240
             SAIEKLEQALK   IS+ VLCGRHKSLYSI+ KMLKKKLT+DEIHDI+GLRLIV+NE DC
Sbjct:   406 SAIEKLEQALKKAGISYHVLCGRHKSLYSIYSKMLKKKLTVDEIHDIHGLRLIVDNEGDC 465

Query:   241 YQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEF 300
             Y+AL VVH LW+EVPGK+KDYIT PKFNGYQSLHTVV   G VPLEVQIRT+EMHLQAEF
Sbjct:   466 YKALGVVHSLWSEVPGKLKDYITHPKFNGYQSLHTVVMDNGTVPLEVQIRTQEMHLQAEF 525

Query:   301 GFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHA 360
             GFAAHWRYKEG C++SSFVLQMVEWARWV+TW CEAMSKDRS + + DSIKPPC FPSH+
Sbjct:   526 GFAAHWRYKEGGCKYSSFVLQMVEWARWVVTWHCEAMSKDRSSISSSDSIKPPCKFPSHS 585

Query:   361 DDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSSTVMDLLERAGRGSSRWSPYGFPLK 420
             +DCP SYKP  S DGPV+VI+IENDKMSVQEFP SSTV DLL RAG GSSRWS YG P K
Sbjct:   586 EDCPASYKPNSSQDGPVYVIVIENDKMSVQEFPASSTVSDLLSRAGPGSSRWSMYGIPAK 645

Query:   421 EELRPRLNHKAVGDPRCKLKMGDVVELTPAIPDKSLTEYREEIQRMYERGLAVSNTGPAV 480
             EELRPRLN   V D + KLKMGDVVELTP IPD+SLTEYREEIQRMY+RGLA S  G  V
Sbjct:   646 EELRPRLNQIPVSDLKWKLKMGDVVELTPTIPDESLTEYREEIQRMYDRGLAFSRPGTMV 705
GO:0003824 "catalytic activity" evidence=IEA
GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0015969 "guanosine tetraphosphate metabolic process" evidence=IEA
GO:0046872 "metal ion binding" evidence=IEA
GO:0008728 "GTP diphosphokinase activity" evidence=IGI
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IEP
GO:0007165 "signal transduction" evidence=RCA
GO:0009414 "response to water deprivation" evidence=RCA
GO:0009620 "response to fungus" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009733 "response to auxin stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0009753 "response to jasmonic acid stimulus" evidence=RCA
GO:0042538 "hyperosmotic salinity response" evidence=RCA
TAIR|locus:2014335 RSH3 "RELA/SPOT homolog 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4637 BA_4637 "GTP pyrophosphokinase" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|Q3A9Z8 relA "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2223 CHY_2223 "GTP pyrophosphokinase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0005 DET_0005 "GTP pyrophosphokinase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_2236 GSU_2236 "GTP pyrophosphokinase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
UNIPROTKB|P0AG24 spoT "guanosine 3'-diphosphate 5'-triphosphate 3'-diphosphatase [multifunctional]" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
UNIPROTKB|P66014 relA "Bifunctional (p)ppGpp synthase/hydrolase relA" [Mycobacterium tuberculosis (taxid:1773)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4973 CPS_4973 "guanosine-3,5-bis(diphosphate) 3-pyrophosphohydrolase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.6LOW CONFIDENCE prediction!
4th Layer2.7.6.5LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
COG0317 701 COG0317, SpoT, Guanosine polyphosphate pyrophospho 1e-132
TIGR00691 683 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/Sp 1e-113
PRK11092 702 PRK11092, PRK11092, bifunctional (p)ppGpp syntheta 1e-88
PRK10872 743 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophos 3e-68
smart00954111 smart00954, RelA_SpoT, Region found in RelA / SpoT 3e-53
pfam04607116 pfam04607, RelA_SpoT, Region found in RelA / SpoT 3e-52
pfam13328156 pfam13328, HD_4, HD domain 2e-45
cd05399129 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase ( 3e-38
COG2357231 COG2357, COG2357, PpGpp synthetase catalytic domai 1e-12
pfam01966111 pfam01966, HD, HD domain 8e-08
smart00471124 smart00471, HDc, Metal dependent phosphohydrolases 1e-04
cd00077145 cd00077, HDc, Metal dependent phosphohydrolases wi 4e-04
>gnl|CDD|223394 COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
 Score =  398 bits (1024), Expect = e-132
 Identities = 160/339 (47%), Positives = 217/339 (64%), Gaps = 13/339 (3%)

Query: 1   MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
            R SG+PY+ H +E A +LA +  +   +AA LLHDT++D  ++ + I   FG  VA LV
Sbjct: 42  TRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVTEELIEEIFGKEVAKLV 101

Query: 61  EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
           EGV+KL ++ +L+     + + ++A+ L  M LAM  D R VLIKLADRLHN+ TL  L 
Sbjct: 102 EGVTKLKKIGQLS-----SEEELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLD 156

Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVE--CFDEA 177
             KR+R A+ETL+I+ PLA+RLGI   K +LE+L F++L+PDQ+  ++  L E     E 
Sbjct: 157 EEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLHPDQYKRIAKLLDEKRLEREQ 216

Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
            + + + +L + LK   I   V  GR K +YSI+ KM KKKL+ DEI+D+  +R+IV+  
Sbjct: 217 YIENVVSELREELKAAGIKAEVS-GRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTI 275

Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQ 297
            DCY AL +VH LW  +PG+  DYI  PK NGYQSLHT V G    P+EVQIRTKEMH  
Sbjct: 276 PDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEI 335

Query: 298 AEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEA 336
           AE G AAHWRYKEG     S   + + W R +L WQ E+
Sbjct: 336 AELGVAAHWRYKEG----GSAYEEKIAWLRQLLEWQEES 370

Length = 701
>gnl|CDD|213552 TIGR00691, spoT_relA, (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>gnl|CDD|236843 PRK11092, PRK11092, bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>gnl|CDD|182797 PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>gnl|CDD|214934 smart00954, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|218170 pfam04607, RelA_SpoT, Region found in RelA / SpoT proteins Back     alignment and domain information
>gnl|CDD|222047 pfam13328, HD_4, HD domain Back     alignment and domain information
>gnl|CDD|143389 cd05399, NT_Rel-Spo_like, Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>gnl|CDD|225232 COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|216815 pfam01966, HD, HD domain Back     alignment and domain information
>gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 488
COG0317 701 SpoT Guanosine polyphosphate pyrophosphohydrolases 100.0
PRK10872 743 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; 100.0
PRK11092 702 bifunctional (p)ppGpp synthetase II/ guanosine-3', 100.0
TIGR00691 683 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( 100.0
KOG1157543 consensus Predicted guanosine polyphosphate pyroph 100.0
PF13328153 HD_4: HD domain; PDB: 3NR1_B. 100.0
cd05399129 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain 99.97
PF04607115 RelA_SpoT: Region found in RelA / SpoT proteins; I 99.96
COG2357231 PpGpp synthetase catalytic domain [General functio 99.95
PF0282460 TGS: TGS domain; InterPro: IPR004095 The TGS domai 99.48
cd0166976 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma 99.1
cd0166675 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate 99.04
cd0166860 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote 98.49
PRK09602396 translation-associated GTPase; Reviewed 98.3
cd0493876 TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma 98.23
TIGR03276179 Phn-HD phosphonate degradation operons associated 98.15
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 97.85
cd0161660 TGS The TGS domain, named after the ThrRS, GTPase, 97.81
PRK0565966 sulfur carrier protein ThiS; Validated 97.47
PRK0643767 hypothetical protein; Provisional 97.4
cd0166761 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn 97.4
cd0056565 ThiS ThiaminS ubiquitin-like sulfur carrier protei 97.38
PRK0744070 hypothetical protein; Provisional 97.15
PRK0769667 sulfur carrier protein ThiS; Provisional 97.06
TIGR0168364 thiS thiamine biosynthesis protein ThiS. This mode 97.06
PRK0177795 hypothetical protein; Validated 96.98
PRK0694465 sulfur carrier protein ThiS; Provisional 96.98
PRK0805366 sulfur carrier protein ThiS; Provisional 96.94
COG210468 ThiS Sulfur transfer protein involved in thiamine 96.93
PTZ00258390 GTP-binding protein; Provisional 96.93
PRK0836470 sulfur carrier protein ThiS; Provisional 96.87
PRK0586365 sulfur carrier protein ThiS; Provisional 96.85
COG1163365 DRG Predicted GTPase [General function prediction 96.85
PRK12444 639 threonyl-tRNA synthetase; Reviewed 96.72
PRK09601364 GTP-binding protein YchF; Reviewed 96.66
PRK0608384 sulfur carrier protein ThiS; Provisional 96.37
PRK0648865 sulfur carrier protein ThiS; Validated 96.32
PLN02908 686 threonyl-tRNA synthetase 96.25
PRK14707 2710 hypothetical protein; Provisional 96.04
PF1445181 Ub-Mut7C: Mut7-C ubiquitin 95.42
PLN0279982 Molybdopterin synthase sulfur carrier subunit 95.26
smart00471124 HDc Metal dependent phosphohydrolases with conserv 95.25
cd0075480 MoaD Ubiquitin domain of MoaD-like proteins. MoaD 95.19
PF0365884 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534 95.11
PRK11840 326 bifunctional sulfur carrier protein/thiazole synth 94.44
PF0259777 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam 94.27
PF01966122 HD: HD domain; InterPro: IPR006674 This domain is 93.34
TIGR0168280 moaD molybdopterin converting factor, subunit 1, n 92.39
COG291499 Uncharacterized protein conserved in bacteria [Fun 91.4
PRK09169 2316 hypothetical protein; Validated 91.33
cd00077145 HDc Metal dependent phosphohydrolases with conserv 90.68
PRK147072710 hypothetical protein; Provisional 90.03
PRK12703339 tRNA 2'-O-methylase; Reviewed 89.22
TIGR0168788 moaD_arch MoaD family protein, archaeal. Members o 87.55
COG1418222 Predicted HD superfamily hydrolase [General functi 87.46
PRK1113081 moaD molybdopterin synthase small subunit; Provisi 84.85
COG4341186 Predicted HD phosphohydrolase [General function pr 83.35
PF0607184 YchF-GTPase_C: Protein of unknown function (DUF933 82.75
TIGR03401228 cyanamide_fam HD domain protein, cyanamide hydrata 82.01
COG0012372 Predicted GTPase, probable translation factor [Tra 81.02
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-134  Score=1096.18  Aligned_cols=424  Identities=42%  Similarity=0.674  Sum_probs=399.7

Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhccccc
Q 011341            1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTAS   80 (488)
Q Consensus         1 ~r~sG~Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~   80 (488)
                      +|+||+|||.||++||.||+++++|.++++||||||++|||++|.++|++.||++|+.||+||||++.++.+.     ..
T Consensus        42 ~r~SGePYi~Hpl~Va~iLael~~d~~tl~AaLLHD~vEDt~~t~e~i~~~FG~eVa~LV~GvTkl~~i~~~~-----~~  116 (701)
T COG0317          42 TRKSGEPYISHPLEVAEILAELHMDMETLAAALLHDTIEDTPVTEELIEEIFGKEVAKLVEGVTKLKKIGQLS-----SE  116 (701)
T ss_pred             cCcCCCchhhCHHHHHHHHHHccCCHHHHHHHHccchHhcCCCCHHHHHHHHCHHHHHHHhhHHHhhhhhccC-----cc
Confidence            4899999999999999999999999999999999999999999999999999999999999999999984221     12


Q ss_pred             chHHHHHHHHHHhhcC-CchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccC
Q 011341           81 KTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN  159 (488)
Q Consensus        81 ~~~~~e~lRkmlla~~-D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~  159 (488)
                      +..|+|++|||++||. |+||++||||||||||||+..+++++|+++|+||++|||||||||||+++|||||||||+||+
T Consensus       117 ~~~qaen~rkmllAm~~DiRvilIKLADRLhNmrtl~~~~~ek~~riakETl~IyAPLA~RLGi~~iK~ELEDlsFr~l~  196 (701)
T COG0317         117 EELQAENLRKMLLAMVKDIRVVLIKLADRLHNLRTLKNLDEEKRRRIARETLDIYAPLAHRLGIGQIKWELEDLSFRYLH  196 (701)
T ss_pred             chhHHHHHHHHHHHhccCccEEEeehhhhhhhcccCccCCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhhC
Confidence            3458999999999998 999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeCCh
Q 011341          160 PDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE  237 (488)
Q Consensus       160 p~~y~~i~~~l~~~~--~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~~~  237 (488)
                      |++|+.|.+.|.+.+  |++++++++..|++.|.++||+++ |+||+||+||||+||++|++.|++|+|++||||||++.
T Consensus       197 P~~Y~~I~~~l~e~r~~re~~i~~~~~~l~~~L~~~gi~a~-v~gR~KhiYSIyrKM~~k~~~f~~I~Dl~avRiIv~~~  275 (701)
T COG0317         197 PDQYKRIAKLLDEKRLEREQYIENVVSELREELKAAGIKAE-VSGRPKHIYSIYRKMQKKKLSFDEIYDVRAVRIIVDTI  275 (701)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEE-EEcCCCcccHHHHHHHHcccChhhhhhheeEEEEECCh
Confidence            999999999998864  889999999999999999999996 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCcch
Q 011341          238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHSS  317 (488)
Q Consensus       238 ~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~  317 (488)
                      .|||++||+||.+|+|+|+|||||||+||+||||||||+|.||.|.++||||||..||..||+|+||||+||++++    
T Consensus       276 ~dCY~~LGiVH~~~kp~PgrFKDYIA~PK~NgYQSlHTtv~gp~g~~vEvQIRT~eMh~~AE~GvAAHW~YKe~~~----  351 (701)
T COG0317         276 PDCYTALGIVHTLWKPIPGEFDDYIANPKPNGYQSLHTTVIGPEGKPVEVQIRTKEMHEIAELGVAAHWRYKEGGS----  351 (701)
T ss_pred             HHHHHHHHHHHhcCcCCCCccccccccCCCCCCceeEEEEECCCCceEEEEEecHHHHHHHhhhHHHHhHhhcCCc----
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999873    


Q ss_pred             hHHHHHHHHHHHHHHHHHhcccCCCCCccCCCCCCCCCCCCCCCCCCcccCCCCCCCCCEEEEEEeCCcceEEecCCCCc
Q 011341          318 FVLQMVEWARWVLTWQCEAMSKDRSCVGNGDSIKPPCTFPSHADDCPFSYKPQCSHDGPVFVIMIENDKMSVQEFPTSST  397 (488)
Q Consensus       318 ~~~~~~~wl~~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vftp~~~~~~~i~v~~~~~~~~~~~~lp~GsT  397 (488)
                      ...+...||++|++||++..+    +.+|++.+|.+ +|+    |+||||||||                ++++||.|||
T Consensus       352 ~~~~~~~Wlr~lle~q~~~~d----~~ef~e~~k~d-lf~----d~VyvfTPkG----------------~vi~LP~Gat  406 (701)
T COG0317         352 AYEEKIAWLRQLLEWQEESAD----SGEFLEQLKSD-LFP----DRVYVFTPKG----------------KVIDLPKGAT  406 (701)
T ss_pred             hhhHHHHHHHHHHHHHHhcCC----cHHHHHHHhhc-ccC----ceEEEECCCC----------------CEEeCCCCCc
Confidence            346779999999999999877    57899999997 554    8999999996                7999999999


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCccccccccCCcccCCCCCccCCCCEEEEee---CCCCccHHH------HHHHHHHHhh
Q 011341          398 VMDLLERAGRGSSRWSPYGFPLKEELRPRLNHKAVGDPRCKLKMGDVVELTP---AIPDKSLTE------YREEIQRMYE  468 (488)
Q Consensus       398 ~~DfAy~i~~~~~~~~~~g~~~~~~v~akvN~~~v~~l~~~L~~GD~VeIi~---~~~~~~~~~------~~~~i~~~~~  468 (488)
                      |+||||+|||++|         ++|+||||||++|| |+++|++||+|||+|   ..|+.+|++      +|.+|++||.
T Consensus       407 plDFAY~vHt~iG---------~~c~gAkVnG~ivp-l~~~Lk~Gd~VEIit~k~~~Ps~~Wl~~v~t~kAR~kIr~~~k  476 (701)
T COG0317         407 PLDFAYAVHTDIG---------HRCIGAKVNGRIVP-LTTKLQTGDQVEIITSKHAGPSRDWLNFVVTSRARAKIRAWFK  476 (701)
T ss_pred             chhhhhhhhchhc---------ceeeEEEECCEEec-cceecCCCCEEEEEeCCCCCCCHHHHHHHhhHHHHHHHHHHHH
Confidence            9999999999975         79999999999995 999999999999999   568889995      4999999994


Q ss_pred             h
Q 011341          469 R  469 (488)
Q Consensus       469 ~  469 (488)
                      .
T Consensus       477 ~  477 (701)
T COG0317         477 K  477 (701)
T ss_pred             H
Confidence            4

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional Back     alignment and domain information
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional Back     alignment and domain information
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family Back     alignment and domain information
>KOG1157 consensus Predicted guanosine polyphosphate pyrophosphohydrolase/synthase [Signal transduction mechanisms] Back     alignment and domain information
>PF13328 HD_4: HD domain; PDB: 3NR1_B Back     alignment and domain information
>cd05399 NT_Rel-Spo_like Nucleotidyltransferase (NT) domain of RelA- and SpoT-like ppGpp synthetases and hydrolases Back     alignment and domain information
>PF04607 RelA_SpoT: Region found in RelA / SpoT proteins; InterPro: IPR007685 The functions of Escherichia coli RelA and SpoT differ somewhat Back     alignment and domain information
>COG2357 PpGpp synthetase catalytic domain [General function prediction only] Back     alignment and domain information
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) [] Back     alignment and domain information
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea Back     alignment and domain information
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2 Back     alignment and domain information
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response Back     alignment and domain information
>PRK09602 translation-associated GTPase; Reviewed Back     alignment and domain information
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF Back     alignment and domain information
>TIGR03276 Phn-HD phosphonate degradation operons associated HDIG domain protein Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin Back     alignment and domain information
>PRK05659 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PRK06437 hypothetical protein; Provisional Back     alignment and domain information
>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA Back     alignment and domain information
>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein Back     alignment and domain information
>PRK07440 hypothetical protein; Provisional Back     alignment and domain information
>PRK07696 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>TIGR01683 thiS thiamine biosynthesis protein ThiS Back     alignment and domain information
>PRK01777 hypothetical protein; Validated Back     alignment and domain information
>PRK06944 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK08053 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PTZ00258 GTP-binding protein; Provisional Back     alignment and domain information
>PRK08364 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK05863 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>COG1163 DRG Predicted GTPase [General function prediction only] Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK09601 GTP-binding protein YchF; Reviewed Back     alignment and domain information
>PRK06083 sulfur carrier protein ThiS; Provisional Back     alignment and domain information
>PRK06488 sulfur carrier protein ThiS; Validated Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PF14451 Ub-Mut7C: Mut7-C ubiquitin Back     alignment and domain information
>PLN02799 Molybdopterin synthase sulfur carrier subunit Back     alignment and domain information
>smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>cd00754 MoaD Ubiquitin domain of MoaD-like proteins Back     alignment and domain information
>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function Back     alignment and domain information
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional Back     alignment and domain information
>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer Back     alignment and domain information
>PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] Back     alignment and domain information
>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal Back     alignment and domain information
>COG2914 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PRK09169 hypothetical protein; Validated Back     alignment and domain information
>cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif Back     alignment and domain information
>PRK14707 hypothetical protein; Provisional Back     alignment and domain information
>PRK12703 tRNA 2'-O-methylase; Reviewed Back     alignment and domain information
>TIGR01687 moaD_arch MoaD family protein, archaeal Back     alignment and domain information
>COG1418 Predicted HD superfamily hydrolase [General function prediction only] Back     alignment and domain information
>PRK11130 moaD molybdopterin synthase small subunit; Provisional Back     alignment and domain information
>COG4341 Predicted HD phosphohydrolase [General function prediction only] Back     alignment and domain information
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes Back     alignment and domain information
>TIGR03401 cyanamide_fam HD domain protein, cyanamide hydratase family Back     alignment and domain information
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
1vj7_A393 Crystal Structure Of The Bifunctional Catalytic Fra 9e-66
3l9d_A255 The Crystal Structure Of Smu.1046c From Streptococc 2e-07
3nr1_A178 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 3e-07
3nqw_A179 A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Pl 5e-07
2be3_A226 Structure Of A Gtp Pyrophosphokinase Family Protein 2e-06
>pdb|1VJ7|A Chain A, Crystal Structure Of The Bifunctional Catalytic Fragment Of Relseq, The RelaSPOT HOMOLOG FROM STREPTOCOCCUS EQUISIMILIS. Length = 393 Back     alignment and structure 
Iteration: 1

 Score =  247 bits (631), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 133/315 (42%), Positives = 199/315 (63%), Gaps = 13/315 (4%)
Query: 1   MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
           +R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  ++ D I   FG  V D+V
Sbjct: 43  VRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIV 102
Query: 61  EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
           +GV+KL ++   + E   A           M +AM+ D R +L+KLADRLHNM TL  L 
Sbjct: 103 DGVTKLGKVEYKSHEEQLAENH------RKMLMAMSKDIRVILVKLADRLHNMRTLKHLR 156
Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFDE--A 177
             K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  +  ++S  + E   E  A
Sbjct: 157 KDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREA 216
Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
           +V   + K++    ++ + F  + GR K +YSI+ KM  KK   D+I D+  +R ++E +
Sbjct: 217 LVDDIVTKIKSYTTEQGL-FGDVYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQ 275
Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTG-EGLVPLEVQIRTKEMHL 296
            D Y  +  +H+LW  +PG+ KDYI  PK NGYQS+HT V G +G  P+E+QIRTKEMH 
Sbjct: 276 SDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG--PIEIQIRTKEMHQ 333
Query: 297 QAEFGFAAHWRYKEG 311
            AE+G AAHW YK+G
Sbjct: 334 VAEYGVAAHWAYKKG 348
>pdb|3L9D|A Chain A, The Crystal Structure Of Smu.1046c From Streptococcus Mutans Ua159 Length = 255 Back     alignment and structure
>pdb|3NR1|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 178 Back     alignment and structure
>pdb|3NQW|A Chain A, A Metazoan Ortholog Of Spot Hydrolyzes Ppgpp And Plays A Role In Starvation Responses Length = 179 Back     alignment and structure
>pdb|2BE3|A Chain A, Structure Of A Gtp Pyrophosphokinase Family Protein From Streptococcus Pneumoniae Length = 226 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query488
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 1e-142
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 8e-51
3nr1_A178 HD domain-containing protein 3; stringent response 7e-49
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 2e-48
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 5e-45
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Length = 393 Back     alignment and structure
 Score =  414 bits (1066), Expect = e-142
 Identities = 136/342 (39%), Positives = 208/342 (60%), Gaps = 15/342 (4%)

Query: 1   MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLV 60
           +R SG+PY++H ++ A +LA +  ++  VA G LHD ++D  ++ D I   FG  V D+V
Sbjct: 43  VRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIV 102

Query: 61  EGVSKLSQLSKLARENNTASKTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALP 119
           +GV+KL ++   + E         A+    M +AM+ D R +L+KLADRLHNM TL  L 
Sbjct: 103 DGVTKLGKVEYKSHE------EQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLR 156

Query: 120 LCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLNPDQHTELSSKLVECFD--EA 177
             K++R ++ET+EI+ PLA+RLGIS  K +LE+L F++LN  +  ++S  + E     EA
Sbjct: 157 KDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLNETEFYKISHMMNEKRREREA 216

Query: 178 MVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE 237
           +V   + K++    ++ +   V  GR K +YSI+ KM  KK   D+I D+  +R ++E +
Sbjct: 217 LVDDIVTKIKSYTTEQGLFGDVY-GRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQ 275

Query: 238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTG-EGLVPLEVQIRTKEMHL 296
            D Y  +  +H+LW  +PG+ KDYI  PK NGYQS+HT V G +G  P+E+QIRTKEMH 
Sbjct: 276 SDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG--PIEIQIRTKEMHQ 333

Query: 297 QAEFGFAAHWRYKEGDCQHSSFVLQM--VEWARWVLTWQCEA 336
            AE+G AAHW YK+G     +   Q   + W + ++  Q  +
Sbjct: 334 VAEYGVAAHWAYKKGVRGKVNQAEQKVGMNWIKELVELQDAS 375
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Length = 255 Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Length = 178 Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Length = 226 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Length = 179 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
1vj7_A393 Bifunctional RELA/SPOT; HD domain, alpha beta 2-la 100.0
3l9d_A255 SMU.1046C, putative GTP pyrophosphokinase; transfe 100.0
2be3_A226 GTP pyrophosphokinase; structural genomics, PSI, p 100.0
3nqw_A179 CG11900; stringent response, pyrophosphohydrolase, 99.97
3nr1_A178 HD domain-containing protein 3; stringent response 99.96
3hvz_A78 Uncharacterized protein; alpha-beta protein, struc 99.72
2eki_A93 DRG 1, developmentally-regulated GTP-binding prote 99.38
2kmm_A73 Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy 98.92
1tke_A 224 Threonyl-tRNA synthetase; ligase; 1.46A {Escherich 98.88
1wwt_A88 Threonyl-tRNA synthetase, cytoplasmic; TGS domain, 98.85
1wxq_A397 GTP-binding protein; structural genomics, riken st 98.63
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 97.54
1f0z_A66 THis protein; ubiquitin fold, transport protein; N 97.23
1tyg_B87 YJBS; alpha beta barrel, protein-protein complex, 97.22
2hj1_A97 Hypothetical protein; structural genomics, PSI, pr 97.2
2l32_A74 Small archaeal modifier protein 2; protein BIN; NM 97.16
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 97.14
2kl0_A73 Putative thiamin biosynthesis THis; structural gen 97.13
2k5p_A78 THis protein, thiamine-biosynthesis protein; NESG, 97.11
1ryj_A70 Unknown; beta/alpha protein, structural genomics, 97.05
1rws_A77 Hypothetical protein PF1061; residual dipolar coup 97.01
2cu3_A64 Unknown function protein; thermus thermophilus HB8 96.89
4a9a_A376 Ribosome-interacting GTPase 1; DRG-DFRP complex, r 96.43
1jal_A363 YCHF protein; nucleotide-binding fold, structural 96.17
2ohf_A396 Protein OLA1, GTP-binding protein 9; ATPase, GTPas 96.11
2dby_A368 GTP-binding protein; GDP, structural genomics, NPP 95.98
2q5w_D77 Molybdopterin converting factor, subunit 1; MOCO, 95.77
1vjk_A98 Molybdopterin converting factor, subunit 1; struct 95.27
3rpf_C74 Molybdopterin converting factor, subunit 1 (MOAD); 94.8
3po0_A89 Small archaeal modifier protein 1; ubiquitin-like 94.69
1fm0_D81 Molybdopterin convertin factor, subunit 1; molybde 93.94
2g1e_A90 Hypothetical protein TA0895; MOAD, molybdopterin, 93.61
1ni3_A392 YCHF GTPase, YCHF GTP-binding protein; structural 93.41
2paq_A201 5'-deoxynucleotidase YFBR; HD domain phosphoh stru 92.54
3b57_A209 LIN1889 protein; Q92AN1, X-RAY, NESG, structural g 90.22
2qgs_A225 Protein Se1688; alpha-helical protein, structural 88.74
2l52_A99 Methanosarcina acetivorans SAMP1 homolog; beta-grA 88.31
3dto_A223 BH2835 protein; all alpha-helical protein, structu 86.48
3dwg_C93 9.5 kDa culture filtrate antigen CFP10A; sulfur ca 86.26
2pjq_A231 Uncharacterized protein LP_2664; LPR71, NESG, stru 85.68
2pq7_A220 Predicted HD superfamily hydrolase; 104161995, HD 84.93
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, mangan PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Back     alignment and structure
Probab=100.00  E-value=3.3e-102  Score=807.43  Aligned_cols=330  Identities=40%  Similarity=0.650  Sum_probs=279.7

Q ss_pred             CCCCCcchhHHHHHHHHHHHHcCCCHHHHHHHhhhccccccCCCHHHHHhHhhHHHHHHHHHhccccccchHHhhccccc
Q 011341            1 MRASGDPYLLHCVETAMLLAAIGANSTVVAAGLLHDTLDDAFLSYDYIFRTFGAGVADLVEGVSKLSQLSKLARENNTAS   80 (488)
Q Consensus         1 ~r~sG~Pyi~H~l~VA~iLa~lg~D~~~i~AALLHDvvEDt~~t~eel~~~FG~~Va~lV~~vTk~~~~~~~~r~~~~~~   80 (488)
                      +|++|+|||.||++||.||+++|+|.++++||||||++|||++|.++|++.||++|+.||+||||++.++...      .
T Consensus        43 ~rksGePYi~Hpl~VA~iLa~l~~D~~~i~AALLHDvvEDt~~t~e~I~~~FG~~Va~lV~gvTk~~~~~~~~------~  116 (393)
T 1vj7_A           43 VRKSGEPYIVHPIQVAGILADLHLDAVTVACGFLHDVVEDTDITLDNIEFDFGKDVRDIVDGVTKLGKVEYKS------H  116 (393)
T ss_dssp             BCTTSCBTTHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHSSCCHHHHHHHHCHHHHHHHHHHHHHC-------------
T ss_pred             cCCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHhhhHHhcCCCCHHHHHHHhCHHHHHHHHHHHhcccCCccc------H
Confidence            4789999999999999999999999999999999999999999999999999999999999999999886421      2


Q ss_pred             chHHHHHHHHHHhhcC-CchhhHHHHhhHHhhhccccCCChHHHHHHHHHHHHHhhhhhcccChhhHHHHHHhhhhhccC
Q 011341           81 KTVEADRLHTMFLAMA-DARAVLIKLADRLHNMMTLDALPLCKRQRFAKETLEIFVPLANRLGISTWKVQLENLCFKHLN  159 (488)
Q Consensus        81 ~~~~~e~lRkmlla~~-D~rvvlIKLADRLhNmrtl~~~~~~k~~~~A~Etl~iyaPLA~rLGi~~ik~ELedl~f~~l~  159 (488)
                      ...|++++||||+||+ |+||++|||||||||||++..+|+++|+++|+||++|||||||||||++||||||||||+||+
T Consensus       117 ~~~qae~~Rkmllam~~D~RvvlIKLADRlhNmRtl~~~~~ek~~~iA~Etl~iyaPLA~rLGi~~ik~ELEdl~f~~l~  196 (393)
T 1vj7_A          117 EEQLAENHRKMLMAMSKDIRVILVKLADRLHNMRTLKHLRKDKQERISRETMEIYAPLAHRLGISRIKWELEDLAFRYLN  196 (393)
T ss_dssp             -------CCSCTTTSCCCHHHHHHHHHHHHHHHHTCC------HHHHHHHHHHTHHHHHHHTTCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhhcCCcceeeeeHHHHHHccCchhhCChHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHhcccc
Confidence            3457999999999997 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeCCh
Q 011341          160 PDQHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENE  237 (488)
Q Consensus       160 p~~y~~i~~~l~~~~--~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~~~  237 (488)
                      |+.|+.|.+.|.+..  ++.+++.+.+.|++.|.+.||.+. |+||+|++||||+||++|+.+|++|+|++|+||||++.
T Consensus       197 p~~y~~i~~~l~~~r~~r~~~i~~i~~~l~~~L~~~gi~~~-v~~R~K~~~Si~~Km~rk~~~~~~i~Di~giRIi~~~~  275 (393)
T 1vj7_A          197 ETEFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQ  275 (393)
T ss_dssp             HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceE-EEEEeCChHHHHHHHHHhCCChhhhcccceEEEEECCH
Confidence            999999999998864  788999999999999999999985 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCc--
Q 011341          238 EDCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQH--  315 (488)
Q Consensus       238 ~dcy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~--  315 (488)
                      +|||.++|+||+.|+|+|++|||||++||+||||||||+|.+|.| ++||||||..||.|||+||++||+||++....  
T Consensus       276 ~dcy~vl~~i~~~~~~~~~~~kDyIa~PK~nGYqSlH~~v~~p~~-~vEIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~~  354 (393)
T 1vj7_A          276 SDVYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVN  354 (393)
T ss_dssp             HHHHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC-------------
T ss_pred             HHHHHHHHHHHhcCCCCCCcccccccCCCcCCcceeEEEEEeCCc-eEEEEEecHHHHHHHHhhHHHHhccccCCCcccc
Confidence            999999999999999999999999999999999999999999999 99999999999999999999999999874321  


Q ss_pred             chhHHHHHHHHHHHHHHHHHhcc
Q 011341          316 SSFVLQMVEWARWVLTWQCEAMS  338 (488)
Q Consensus       316 ~~~~~~~~~wl~~l~e~~~~~~~  338 (488)
                      .....++++||++|++||++..+
T Consensus       355 ~~~~~~~~~wl~~ll~~~~~~~~  377 (393)
T 1vj7_A          355 QAEQKVGMNWIKELVELQDASNG  377 (393)
T ss_dssp             --------CHHHHHHHC------
T ss_pred             hhhhHHHHHHHHHHHHHHhcCCC
Confidence            12234578999999999988766
>3l9d_A SMU.1046C, putative GTP pyrophosphokinase; transferase; 2.48A {Streptococcus mutans} Back     alignment and structure
>2be3_A GTP pyrophosphokinase; structural genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG, transferase; HET: PG4; 2.40A {Streptococcus pneumoniae} SCOP: d.218.1.8 Back     alignment and structure
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Back     alignment and structure
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum} Back     alignment and structure
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Back     alignment and structure
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis} Back     alignment and structure
>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A* Back     alignment and structure
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens} Back     alignment and structure
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2 Back     alignment and structure
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2 Back     alignment and structure
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4 Back     alignment and structure
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii} Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A Back     alignment and structure
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2 Back     alignment and structure
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A Back     alignment and structure
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E Back     alignment and structure
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae} Back     alignment and structure
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} Back     alignment and structure
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A Back     alignment and structure
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B* Back     alignment and structure
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1 Back     alignment and structure
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori} Back     alignment and structure
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A Back     alignment and structure
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D Back     alignment and structure
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A Back     alignment and structure
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 Back     alignment and structure
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphoh structural genomics, PSI, protein structure initiative, MID center for structural genomics, MCSG; 2.10A {Escherichia coli} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Back     alignment and structure
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Back     alignment and structure
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 Back     alignment and structure
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans} Back     alignment and structure
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Back     alignment and structure
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A Back     alignment and structure
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Back     alignment and structure
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 488
d2be3a1203 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase 4e-36
d1vj7a1192 a.211.1.1 (A:5-196) Stringent response-like protei 1e-34
d1vj7a2175 d.218.1.8 (A:197-371) Stringent response-like prot 2e-29
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Length = 203 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: RelA/SpoT domain
domain: Putative GTP pyrophosphokinase SP1097
species: Streptococcus pneumoniae [TaxId: 1313]

 Score =  130 bits (328), Expect = 4e-36
 Identities = 43/170 (25%), Positives = 79/170 (46%), Gaps = 16/170 (9%)

Query: 183 IEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTM----DEIHDIYGLRLIVENEE 238
            ++  +  K   I F+   GR K + SI  KM ++ +T      ++ DI GLR++V+  +
Sbjct: 27  RKQYRKQNKHSPIEFVT--GRVKPIESIKEKMARRGITYATLEHDLQDIAGLRVMVQFVD 84

Query: 239 DCYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVT-------GEGLVPLEVQIRT 291
           D  + + ++H+       + +DYIT  K +GY+S H VV        G   +  E+QIRT
Sbjct: 85  DVKEVVDILHKRQDMRIIQERDYITHRKASGYRSYHVVVEYTVDTINGAKTILAEIQIRT 144

Query: 292 KEMHLQAEFGFAAHWRYKEGDCQHSSFVLQMVEWARWVLTWQCEAMSKDR 341
             M+  A    + +++Y+         + + +E    +     E M + R
Sbjct: 145 LAMNFWATIEHSLNYKYQGDFPDE---IKKRLEITARIAHQLDEEMGEIR 191
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Length = 192 Back     information, alignment and structure
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Length = 175 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query488
d1vj7a2175 Stringent response-like protein RelA domain 2 {Str 100.0
d1vj7a1192 Stringent response-like protein RelA N-terminal do 100.0
d2be3a1203 Putative GTP pyrophosphokinase SP1097 {Streptococc 100.0
d1wxqa276 GTP-binding protein PH0525 {Pyrococcus horikoshii 99.45
d1tkea162 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.25
d1nyra259 Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi 99.1
d1zud2165 Thiamin biosynthesis sulfur carrier protein ThiS { 97.19
d1rwsa_68 Hypothetical protein PF1061 {Archaeon Pyrococcus f 96.64
d1tygb_65 Thiamin biosynthesis sulfur carrier protein ThiS { 96.51
d2cu3a163 Uncharacterised protein TTHA0675 {Thermus thermoph 96.4
d2hj1a177 Hypothetical protein HI0395 {Haemophilus influenza 95.96
d1vjka_88 Molybdopterin synthase subunit MoaD {Pyrococcus fu 95.28
d2pq7a1217 Predicted hydrolase mes0020 {Uncultured thermotoga 84.71
d1ni3a282 YchF GTP-binding protein, C-terminal domain {Fissi 84.51
d1jala285 YchF GTP-binding protein, C-terminal domain {Haemo 83.19
d3dtoa1212 Uncharacterized protein BH2835 {Bacillus haloduran 83.03
d3b57a1201 Uncharacterized protein Lin1889 {Listeria innocua 82.99
d2qgsa1216 Uncharacterized protein SE1688 {Staphylococcus epi 82.18
d2pjqa1215 Uncharacterized protein LP2664 {Lactobacillus plan 80.52
>d1vj7a2 d.218.1.8 (A:197-371) Stringent response-like protein RelA domain 2 {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Nucleotidyltransferase
superfamily: Nucleotidyltransferase
family: RelA/SpoT domain
domain: Stringent response-like protein RelA domain 2
species: Streptococcus equisimilis [TaxId: 119602]

Probab=100.00  E-value=1.8e-52  Score=388.15  Aligned_cols=168  Identities=38%  Similarity=0.634  Sum_probs=143.1

Q ss_pred             hHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhcCCceeeeeccccChHHHHHHHhhcCCCCCCCCcceEEEEEeCChHH
Q 011341          162 QHTELSSKLVECF--DEAMVTSAIEKLEQALKDKNISFLVLCGRHKSLYSIHCKMLKKKLTMDEIHDIYGLRLIVENEED  239 (488)
Q Consensus       162 ~y~~i~~~l~~~~--~~~~i~~~~~~l~~~L~~~gi~~~~v~~R~K~~~Si~~K~~rk~~~~~~i~Dl~giRIiv~~~~d  239 (488)
                      +|++|++.|.+..  ++++++.++..|++.|.+.||.++ |+||+|++||||+||.+++.+|++|+|++|+||||.+.+|
T Consensus         3 EY~~I~~~l~~~r~~re~~i~~i~~~L~~~L~~~~i~~~-I~gR~K~~ySI~~Km~~k~~~~~~i~Di~aiRIIv~~~~d   81 (175)
T d1vj7a2           3 EFYKISHMMNEKRREREALVDDIVTKIKSYTTEQGLFGD-VYGRPKHIYSIYRKMRDKKKRFDQIFDLIAIRCVMETQSD   81 (175)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTCCCE-EEECCCCHHHHHHHHHHHGGGCCTTGGGCEEEEEESSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccE-EEEEEccHHHHHHHHHhcCCChhhccccceEEEEEeeccc
Confidence            3999999998763  788999999999999999999985 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhccCCCCcccCcccCCCCCCccceeEEEEcCCeeeEEEEEeehhhhHHHHhhhhhhcccccCCCCcc--h
Q 011341          240 CYQALRVVHQLWAEVPGKMKDYITRPKFNGYQSLHTVVTGEGLVPLEVQIRTKEMHLQAEFGFAAHWRYKEGDCQHS--S  317 (488)
Q Consensus       240 cy~vl~~i~~~~~~~~~~~kDyI~~PK~nGYqSlH~~v~~~~g~~~EIQIRT~~mh~~Ae~g~aah~~YK~~~~~~~--~  317 (488)
                      ||.+||+||+.|+|+|++|||||++||+||||||||+|.+|+| ++||||||..||.|||+|+||||+||++.....  .
T Consensus        82 cy~~lg~ih~~~~p~~~r~kDyI~~PK~nGYqSLHt~v~~~~~-~~evqIRT~~M~~~Ae~G~aahw~Yk~~~~~~~~~~  160 (175)
T d1vj7a2          82 VYAMVGYIHELWRPMPGRFKDYIAAPKANGYQSIHTTVYGPKG-PIEIQIRTKEMHQVAEYGVAAHWAYKKGVRGKVNQA  160 (175)
T ss_dssp             HHHHHHHHHHHSCBCTTCCEETTTSCCTTCCCCEEEEEECSSS-EEEEEEEEHHHHHHHHHTTCC---------------
T ss_pred             HHHHHHHHHhcCCceeeccccccccCCCCCcceEEEEEEcCCc-cEEEEEEehHHHHHHhhhHHHHHhhccCCCCCcchH
Confidence            9999999999999999999999999999999999999999987 799999999999999999999999998743221  2


Q ss_pred             hHHHHHHHHHHHHH
Q 011341          318 FVLQMVEWARWVLT  331 (488)
Q Consensus       318 ~~~~~~~wl~~l~e  331 (488)
                      .......||++|+|
T Consensus       161 ~~~~~~~wl~~lle  174 (175)
T d1vj7a2         161 EQKVGMNWIKELVE  174 (175)
T ss_dssp             ------CHHHHHHH
T ss_pred             HHHHHHHHHHHhhc
Confidence            23335679998886
>d1vj7a1 a.211.1.1 (A:5-196) Stringent response-like protein RelA N-terminal domain {Streptococcus equisimilis [TaxId: 119602]} Back     information, alignment and structure
>d2be3a1 d.218.1.8 (A:1-203) Putative GTP pyrophosphokinase SP1097 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rwsa_ d.15.3.2 (A:) Hypothetical protein PF1061 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} Back     information, alignment and structure
>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} Back     information, alignment and structure
>d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} Back     information, alignment and structure
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure