Citrus Sinensis ID: 011362
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LQ14 | 629 | Pentatricopeptide repeat- | yes | no | 0.926 | 0.717 | 0.391 | 2e-96 | |
| P0C7Q7 | 602 | Putative pentatricopeptid | no | no | 0.936 | 0.757 | 0.374 | 5e-96 | |
| Q9CAN0 | 630 | Pentatricopeptide repeat- | no | no | 0.926 | 0.715 | 0.382 | 2e-94 | |
| Q9CAN5 | 614 | Pentatricopeptide repeat- | no | no | 0.926 | 0.734 | 0.371 | 2e-93 | |
| Q9SXD8 | 634 | Pentatricopeptide repeat- | no | no | 0.926 | 0.711 | 0.378 | 4e-93 | |
| Q9LQ16 | 632 | Pentatricopeptide repeat- | no | no | 0.926 | 0.713 | 0.376 | 7e-92 | |
| Q0WKV3 | 637 | Pentatricopeptide repeat- | no | no | 0.938 | 0.717 | 0.367 | 6e-91 | |
| Q9C8T7 | 559 | Pentatricopeptide repeat- | no | no | 0.926 | 0.806 | 0.369 | 8e-91 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.926 | 0.715 | 0.367 | 1e-90 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.948 | 0.743 | 0.364 | 7e-90 |
| >sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 353 bits (905), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/457 (39%), Positives = 278/457 (60%), Gaps = 6/457 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++ + P+ VTF +LI GL ++ EA AL ++ GC+PD+FTY
Sbjct: 165 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 224
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
T+VNGLC+ +AL+L ++M G E + V YTTIID LC V+ A L
Sbjct: 225 TVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLF 278
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M +K I+PNVVTY S+IR C W++A RL +M+++ + PNVVTF+ ++D K
Sbjct: 279 TEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 338
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C V +Y
Sbjct: 339 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI G+CK K +E + L+ EM +G+ + V +NTL GLF+ + A K+F +M
Sbjct: 399 NTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 458
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV D TY +DGLCK G + +A+ +F L+ K E DI YN +I+G+CK+G++E
Sbjct: 459 DGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVED 518
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF SL + PNV+ Y+ MI G C G ++A LF +M+E+ +PN T++ LIR
Sbjct: 519 GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ + DAS +S+V+++L
Sbjct: 579 ARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 352 bits (902), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 173/462 (37%), Positives = 275/462 (59%), Gaps = 6/462 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
+ + VLG+++K + PD TF +LIKGL E ++ EA L ++ GC+PDV TY
Sbjct: 138 KTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVVTYN 197
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
++VNG+CR+ T +AL+L +M N + + TY+TIID LC++G +D A L
Sbjct: 198 SIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIIDSLCRDGCIDAAISLF 251
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M+ K IK +VVTY S++RG C A WN+ L +M+ + + PNV+TFNV++D K
Sbjct: 252 KEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKE 311
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA+ L MI G+ P+ TYNTL+DG+C+ R++ A + M C + ++
Sbjct: 312 GKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI GYC K ++ + ++ + +G+ + V ++ L G + +++ A +LF EM
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVS 431
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV D TY +DGLC NG + +A+E+F L+ K + I Y ++I+G+CK G++E
Sbjct: 432 HGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVED 491
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
A LF SLPC + PNV+TY++MI GLC G + +A L MEE+ PN T++ LIR
Sbjct: 492 AWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPNDCTYNTLIR 551
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI 464
+R + + +L+ +MK DAS + +V+D+L E+
Sbjct: 552 AHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSGEL 593
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 346 bits (887), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 175/457 (38%), Positives = 274/457 (59%), Gaps = 6/457 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++G++++ + PD+ TF +LI GL +R EA AL ++ V GC+PD+ TY
Sbjct: 166 RISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYG 225
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
+VNGLC+ +AL+L ++M G EP V Y TIID LC V+ A L
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGK------IEPGVVIYNTIIDALCNYKNVNDALNLF 279
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M +K I+PNVVTY S+IR C W++A RL +M+++ + PNVVTF+ ++D K
Sbjct: 280 TEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 339
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C V +Y
Sbjct: 340 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 399
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI G+CK K ++ + L+ EM +G+ + V + TL G F+ + + A +F +M
Sbjct: 400 NTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVS 459
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV D TY +DGLC NG + A+ +F L+ K E DI YN +I+G+CK+G++E
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF SL + PNVVTY+ M+ G C G ++A LF +M+E +P+ T++ LIR
Sbjct: 520 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ + DAS + +V ++L
Sbjct: 580 AHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNML 616
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 343 bits (879), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 170/457 (37%), Positives = 274/457 (59%), Gaps = 6/457 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++++ + PD VTFT+L+ GL ++ EA AL ++ V GC+PD+ TY
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
++NGLC+ +ALNL +M G E + V Y+T+ID LCK VD A L
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGK------IEADVVIYSTVIDSLCKYRHVDDALNLF 263
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M +K I+P+V TY+S+I C W++A RL +M+++ + PNVVTFN ++D K
Sbjct: 264 TEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L D MIQ + P+ TYN+L++GFC+ R++ A+++F M S C V +Y
Sbjct: 324 GKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 383
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LING+CK K++ + L+ +M +G+ + V + TL G F+ + A +F +M
Sbjct: 384 NTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVS 443
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV + TY T +DGLCKNG + +A+ +F L+ K E DI YN + +G+CK+G++E
Sbjct: 444 DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF SL + P+V+ Y+ MI G C G ++A LF+ M+E+ +P+ T++ LIR
Sbjct: 504 GWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIR 563
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ DAS +V D+L
Sbjct: 564 AHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML 600
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590 OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 342 bits (877), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 173/457 (37%), Positives = 275/457 (60%), Gaps = 6/457 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++++ + PD +TFT+LI GL ++ EA AL ++ GC+P++ TY
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
+VNGLC+ T +ALNL +M E + V + TIID LCK VD A L
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKMEAAK------IEADVVIFNTIIDSLCKYRHVDDALNLF 283
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M+ K I+PNVVTY+S+I C W++A +L +M+++ + PN+VTFN ++D K
Sbjct: 284 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK EA +L D MI+ + PD FTYN+L++GFC+ R++ AK++F M S C V +Y
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTY 403
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI G+CK+K +E L+ EM +G+ D V + TL GLF + A K+F +M
Sbjct: 404 NTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 463
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV D TY +DGLC NG + +A+E+F ++ + + DI Y ++I+G+CK+G+++
Sbjct: 464 DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 523
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF SL + PNVVTY+ MI GLC+ + +A L M+E+ +PN T++ LIR
Sbjct: 524 GWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIR 583
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ + DAS + +V ++L
Sbjct: 584 AHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 620
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 338 bits (866), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 172/457 (37%), Positives = 269/457 (58%), Gaps = 6/457 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++++ + PD TFT+LI GL ++ EA AL ++ GC+PD+ TY
Sbjct: 168 RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYG 227
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
T+VNGLC+ +AL+L ++M G E + V Y TIIDGLCK +D A L
Sbjct: 228 TVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYNTIIDGLCKYKHMDDALNLF 281
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M +K I+P+V TY+S+I C W++A RL +M+++ + PNVVTF+ ++D K
Sbjct: 282 TEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 341
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C V +Y
Sbjct: 342 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 401
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
S LI G+CK K +E + L+ EM +G+ + V + TL G F+ + A +F +M
Sbjct: 402 STLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVS 461
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
GV + TY +DGLCKNG + +A+ +F L+ E DI YN +I+G+CK+G++E
Sbjct: 462 VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVED 521
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
ELF +L + PNV+ Y+ MI G C G ++A L M+E+ +PN T++ LIR
Sbjct: 522 GWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNTLIR 581
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + EL+ +M+ DAS + +V ++L
Sbjct: 582 ARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 618
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 335 bits (858), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 170/463 (36%), Positives = 269/463 (58%), Gaps = 6/463 (1%)
Query: 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTY 61
GRVS ++ R+++ PD +T +L+ GLC + EA L K+ +GC+P+ TY
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231
Query: 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL 121
++N +C++ T +A+ L +M N + + V Y+ IIDGLCK G +D A L
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKL------DAVKYSIIIDGLCKHGSLDNAFNL 285
Query: 122 LLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181
+M+ K I N++TY +I GFC A W++ +L +M+ + + PNVVTF+V++D K
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Query: 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241
GK+ EA L MI G+ PD TY +L+DGFC ++ A ++ M S GC + +
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405
Query: 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301
++ILINGYCK I+ L L+ +M +G+ D V +NTL G E+ ++ A +LF EM
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465
Query: 302 RNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLE 361
V + TY+ +DGLC NG +A+E+F + K E DI YN +I G+C + +++
Sbjct: 466 SRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 525
Query: 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLI 421
A +LF SLP + P V TY+IMIGGLC G + +A LF MEE+ P+ T+++LI
Sbjct: 526 DAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 585
Query: 422 RGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI 464
R + + +K ++L+ ++K DAS + +V+D+L+ +
Sbjct: 586 RAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRL 628
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 334 bits (857), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 169/457 (36%), Positives = 273/457 (59%), Gaps = 6/457 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++++ + PD +TFT+LI GL ++ EA AL ++ GC+P++ TY
Sbjct: 95 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 154
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
+VNGLC+ +A NL +M E + V + TIID LCK VD A L
Sbjct: 155 VVVNGLCKRGDIDLAFNLLNKMEAAK------IEADVVIFNTIIDSLCKYRHVDDALNLF 208
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M+ K I+PNVVTY+S+I C W++A +L +M+++ + PN+VTFN ++D K
Sbjct: 209 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 268
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK EA +L D MI+ + PD FTYN+L++GFC+ R++ AK++F M S C + +Y
Sbjct: 269 GKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTY 328
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI G+CK+K +E L+ EM +G+ D V + TL GLF + A K+F +M
Sbjct: 329 NTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 388
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV D TY +DGLC NG + +A+E+F ++ + + DI Y ++I+G+CK+G+++
Sbjct: 389 DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 448
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF SL + PNVVTY+ MI GLC+ + +A L M+E+ +P+ T++ LIR
Sbjct: 449 GWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNTLIR 508
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ + DAS + +V ++L
Sbjct: 509 AHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 545
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 334 bits (856), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 168/457 (36%), Positives = 270/457 (59%), Gaps = 6/457 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++ + + P+ VTF +LI GL ++ EA AL ++ GC+PD+ TY
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
+VNGLC+ T +A NL +M G EP + Y TIIDGLCK +D A L
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGK------LEPGVLIYNTIIDGLCKYKHMDDALNLF 279
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M+ K I+PNVVTY+S+I C W++A RL +M+++ + P+V TF+ ++D K
Sbjct: 280 KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 339
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L D M++ + P TY++L++GFC+ R++ AK++F M S C V +Y
Sbjct: 340 GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 399
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI G+CK K +E + ++ EM +G+ + V +N L GLF+ + A ++F EM
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV + TY T +DGLCKNG + +A+ +F L+ K E I YN +I+G+CK+G++E
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVED 519
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF +L + P+VV Y+ MI G C G ++A LF +M+E+ +PN ++ LIR
Sbjct: 520 GWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 579
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + EL+ +M+ DAS + +V ++L
Sbjct: 580 ARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 331 bits (849), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 179/491 (36%), Positives = 275/491 (56%), Gaps = 29/491 (5%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
++S F +G+I+K + PD VTF++LI GLC E R+ EA L ++ G +P + T
Sbjct: 122 KLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLN 181
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGE---------FGVVCEP---------------- 97
LVNGLC A+ L + M + V+C+
Sbjct: 182 ALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEER 241
Query: 98 ----NTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEA 153
+ V Y+ IIDGLCK+G +D A L +M+ K K +++ YT++IRGFCYA W++
Sbjct: 242 KIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDG 301
Query: 154 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDG 213
+L +M+ + + P+VV F+ ++D K GK+ EA L MIQ G+ PD TY +L+DG
Sbjct: 302 AKLLRDMIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDG 361
Query: 214 FCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 273
FC +++ A + M S GC + +++ILINGYCK I+ L L+ +M +G+ D
Sbjct: 362 FCKENQLDKANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVAD 421
Query: 274 VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFH 333
V +NTL G E+ ++E A +LF EM V D +Y+ +DGLC NG +A+E+F
Sbjct: 422 TVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFE 481
Query: 334 TLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393
+ K E DI YN +I G+C + +++ A +LF SLP + P+V TY+IMIGGLC G
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKG 541
Query: 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVS 453
+ +A LF MEE+ PN T+++LIR + + +K +L+ ++K DAS V
Sbjct: 542 SLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVK 601
Query: 454 IVVDLLAKNEI 464
+VVD+L+ +
Sbjct: 602 MVVDMLSDGRL 612
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| 359479583 | 627 | PREDICTED: pentatricopeptide repeat-cont | 0.979 | 0.760 | 0.525 | 1e-140 | |
| 449520325 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.790 | 0.475 | 1e-129 | |
| 449529622 | 618 | PREDICTED: pentatricopeptide repeat-cont | 0.975 | 0.768 | 0.476 | 1e-127 | |
| 255559961 | 628 | pentatricopeptide repeat-containing prot | 0.952 | 0.738 | 0.487 | 1e-127 | |
| 449520323 | 605 | PREDICTED: pentatricopeptide repeat-cont | 0.827 | 0.666 | 0.495 | 1e-124 | |
| 449462477 | 597 | PREDICTED: pentatricopeptide repeat-cont | 0.907 | 0.740 | 0.486 | 1e-119 | |
| 449462479 | 580 | PREDICTED: pentatricopeptide repeat-cont | 0.930 | 0.781 | 0.452 | 1e-117 | |
| 449444222 | 588 | PREDICTED: pentatricopeptide repeat-cont | 0.897 | 0.743 | 0.452 | 1e-101 | |
| 224130786 | 599 | predicted protein [Populus trichocarpa] | 0.936 | 0.761 | 0.408 | 1e-101 | |
| 224130706 | 613 | predicted protein [Populus trichocarpa] | 0.940 | 0.747 | 0.411 | 3e-99 |
| >gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Vitis vinifera] gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 505 bits (1300), Expect = e-140, Method: Compositional matrix adjust.
Identities = 252/480 (52%), Positives = 331/480 (68%), Gaps = 3/480 (0%)
Query: 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFT 60
+ +V G VLG +L+ +P+ VTFTSL+KGLC SRI EA L K+ G P+V T
Sbjct: 140 LNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLLRKMVRMGYRPNVVT 199
Query: 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE 120
Y TL+NGLC T +T++A+ L EEM NGNG FGV +PN V Y TIID LCK+G +DK KE
Sbjct: 200 YGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTIIDSLCKDGLIDKGKE 259
Query: 121 LLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180
L L+MK + I P+VV Y+S+I G C+ W AK LF EM+D+GV PNVVTFNV++D LC
Sbjct: 260 LFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALC 319
Query: 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240
K GKM+EA+ LL LMIQ G PD FTYNTL+DGFCL GR++ A++LFVSMES G +
Sbjct: 320 KAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAV 379
Query: 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM 300
SY++LINGYCK+ + A LY EM+ K I P V+ +NTL GLF +V A+ LF EM
Sbjct: 380 SYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEM 439
Query: 301 QRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRL 360
+ + + ++ TY +DGLCKN ++ EA+ELFH L + I+ +N LIDGLCK+ ++
Sbjct: 440 KVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKARKI 499
Query: 361 EIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDML 420
EIA ELF L L PNV+TY++MI GLC GQ++ A+DLFL MEE PN++TF+ L
Sbjct: 500 EIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTL 559
Query: 421 IRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHEQ 477
+RGF + +E KV+ELL +M E + PDAS +SIVVDLL+K+E L+ LP+F Q
Sbjct: 560 MRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQGQ 619
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 230/484 (47%), Positives = 330/484 (68%), Gaps = 6/484 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+ GF IL+ ++P+ VT+ +LIKGLC E RI EA LF +++ GC PDV TY
Sbjct: 119 RLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYG 178
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
TL+ GLC T + +AL L +EM N + + C+PN +TY I+DGLCK G D+AK+L
Sbjct: 179 TLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLF 238
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+MK + + P++++Y S+I GFC A W E+KRL EM+DQG+QP++VTFNV++D LCK
Sbjct: 239 EEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVLIDTLCKE 298
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +LL +MI+ G+ PD TYN+L++GFC+ G +N A+ELFVSM S GC+ V SY
Sbjct: 299 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 358
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
++LINGY K ++E A+ LY+EML G +P+V+ +++L G+F +V+ A KLF M+
Sbjct: 359 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 418
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+G+A +++TY F+DGLCKN + EA++LF L+ + +I N LIDGLCK+G+LE
Sbjct: 419 HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLET 478
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
A ELF L PNVVTY+IMI G C +GQ+DKA L ME N P++IT++ L+R
Sbjct: 479 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMR 538
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHEQQE 479
GF N+ +V++LLH+M + +V PDA SIVVD+L+K+E L+ LP F + Q+
Sbjct: 539 GFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPI---QK 595
Query: 480 EVDE 483
VD+
Sbjct: 596 GVDK 599
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/478 (47%), Positives = 325/478 (67%), Gaps = 3/478 (0%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
RVS + IL+ + P+ VT+T+LIKGLC E RI EA LF +++ GC P+ TY
Sbjct: 141 RVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQKLGCTPNAVTYG 200
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
TL+ GLC+T + +AL L +EM N ++GV C+P +TY+ IIDGLCK G D+AKEL
Sbjct: 201 TLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELF 260
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+MK + + P+V++Y+++I GFC A W+++K LF EM+DQGVQP++VTF+V++D LCK
Sbjct: 261 EEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKE 320
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +LL++MIQ G+ P+ TYN+L+DGFC+ G +N A+ELF+SM S G + SY
Sbjct: 321 GKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISY 380
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LINGYCK +++ A++LY+EML G P+V + TL GLF+ +V A KLF M+
Sbjct: 381 TTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKT 440
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
GV+A++ Y F+DGLCKN + EA+ELF+ L+ + +I Y+ LIDGLCK+G+LE
Sbjct: 441 YGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLET 500
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
A ELF L L P+VVTY+IMI G C GQ+D A LF MEEN P++I ++ L+
Sbjct: 501 AWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLC 560
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS---LNSLPSFTVHEQ 477
GF N+ +VI+LLHKM + +V P+A+ +IVVD+L K+E ++ LP F V
Sbjct: 561 GFCEGNKLEEVIKLLHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPKFPVQRH 618
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 234/480 (48%), Positives = 320/480 (66%), Gaps = 16/480 (3%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
RV GFVV G IL+ + P+ TFT+L+KGLC E +I EA +F + VF C P T
Sbjct: 157 RVFEGFVVFGMILRKGYRPNTRTFTNLVKGLCLEGKIGEAVRVFKIMGVFDCRPSAITCG 216
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
L++GLCRT +T AL L E M NGN +FG+ C+P V+Y+ IID LCK+G V++AKE
Sbjct: 217 VLISGLCRTGNTCNALKLHEAMINGNSDFGINCKPTVVSYSCIIDSLCKDGLVERAKEFF 276
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
++MK+K I PNVVTYTS++ G C A +W EAKRLFIEM+D G+ P+VVTF+V++ LCK
Sbjct: 277 VEMKEKGIFPNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKV 336
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EAS L DLM+Q V P TYN L++G+CL G V+ K++F+SM + C+H SY
Sbjct: 337 GKVKEASGLFDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSY 396
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
SIL+ YCK+ E+ GA+ LY EM+ +GI+P V+ ++ +V A KLF E+Q
Sbjct: 397 SILMKAYCKDSEVHGAMILYREMMDRGIQPTVITYS----------KVGDARKLFGEIQF 446
Query: 303 NGVAADTWT---YRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGR 359
+ D+ + Y ++DGLCKNG + EA+++F+ L K ++ +NSLI+G+C+S +
Sbjct: 447 QDMVLDSISYSIYNVYLDGLCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEK 506
Query: 360 LEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDM 419
LEIA ELF L L P+VVTY+IMI GLC GQ KA DLFL+MEE PNV+TF+
Sbjct: 507 LEIAWELFNRLCNEALQPDVVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNT 566
Query: 420 LIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHE 476
L+RG +E K++ELLHKM + PDAS + IV+D+L K+E LN LP+F V E
Sbjct: 567 LMRGLCLNSERPKIVELLHKMAARKLSPDASTLLIVMDILLKDENYHECLNLLPTFPVQE 626
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/450 (49%), Positives = 304/450 (67%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
RV G V+ IL+ + PD VT+T+LIKGLC E RI +AA LFT+++ GC P+ TY
Sbjct: 146 RVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYG 205
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
TL+ GLCRT + +AL L +EM N + +G+ +P ++Y+ IID LCK+ D+A++L
Sbjct: 206 TLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLF 265
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+MK + + P V++YTS+I GFC W EAKRLF EM++QGVQPNVVTFNV++D LCK
Sbjct: 266 EEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKE 325
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA LL++MIQ G+ P+ TYN+L++GFCL G +N A+ELFVSM S GC+ V Y
Sbjct: 326 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 385
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
++LINGYCK ++E A+ LY+ ML G +PDV + L GLF+ +V A KLF M+
Sbjct: 386 TVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKV 445
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
G+ D + Y F++GLCKNG + EA+ELF+ L+ + DI +N LIDGLCK+G+LE
Sbjct: 446 YGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLET 505
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
A ELF LP L P+VVTY+IMI C GQ+ KA LF ME+N P+ IT+ LIR
Sbjct: 506 AWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 565
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIV 452
GF + KV+ELLH M + +V D +I+
Sbjct: 566 GFFESKKLEKVVELLHMMVQRDVSLDVNIL 595
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 436 bits (1122), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/450 (48%), Positives = 301/450 (66%), Gaps = 8/450 (1%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
RV G V+ IL+ + PD VT+T+LIKGLC E RI +AA LFT+++ GC P+ TY
Sbjct: 146 RVGEGLAVMAGILRRGYIPDIVTYTTLIKGLCMEHRISKAALLFTRMQKLGCTPNAITYG 205
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
TL+ GLCRT + +AL L +EM N + +G+ +P ++Y+ IID LCK+ D+A++L
Sbjct: 206 TLMKGLCRTGNISIALKLHQEMLNDSSLYGINFKPVVISYSIIIDALCKDRREDEARDLF 265
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+MK + + P V++YTS++ W EAKRLF EM++QGVQPNVVTFNV++D LCK
Sbjct: 266 EEMKVQGMTPTVISYTSLM--------WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKE 317
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA LL++MIQ G+ P+ TYN+L++GFCL G +N A+ELFVSM S GC+ V Y
Sbjct: 318 GKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 377
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
++LINGYCK ++E A+ LY+ ML G +PDV + L GLF+ +V A KLF M+
Sbjct: 378 TVLINGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKV 437
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
G+ D + Y F++GLCKNG + EA+ELF+ L+ + DI +N LIDGLCK+G+LE
Sbjct: 438 YGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLET 497
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
A ELF LP L P+VVTY+IMI C GQ+ KA LF ME+N P+ IT+ LIR
Sbjct: 498 AWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIR 557
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIV 452
GF + KV+ELLH M + +V D +I+
Sbjct: 558 GFFESKKLEKVVELLHMMVQRDVSLDVNIL 587
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 219/484 (45%), Positives = 313/484 (64%), Gaps = 31/484 (6%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+ GF IL+ ++P+ VT+ +LIKGLC E RI EA LF +++ GC PDV TY
Sbjct: 119 RLREGFAAFAGILRRGYSPNIVTYNTLIKGLCMEHRISEATRLFLRMQKLGCTPDVVTYG 178
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
TL+ GLC T + +AL L +EM N + + C+PN +TY I+DGLCK G D+AK+L
Sbjct: 179 TLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGREDEAKQLF 238
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+MK + + PN EM+DQG+QP++VTFNV++D LCK
Sbjct: 239 EEMKTQGMIPN-------------------------EMLDQGLQPDMVTFNVLIDTLCKE 273
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +LL +MI+ G+ PD TYN+L++GFC+ G +N A+ELFVSM S GC+ V SY
Sbjct: 274 GKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISY 333
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
++LINGY K ++E A+ LY+EML G +P+V+ +++L G+F +V+ A KLF M+
Sbjct: 334 NVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKA 393
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+G+A +++TY F+DGLCKN + EA++LF L+ + +I N LIDGLCK+G+LE
Sbjct: 394 HGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLNCLIDGLCKAGKLET 453
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
A ELF L PNVVTY+IMI G C +GQ+DKA L ME N P++IT++ L+R
Sbjct: 454 AWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMR 513
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI---SLNSLPSFTVHEQQE 479
GF N+ +V++LLH+M + +V PDA SIVVD+L+K+E L+ LP F + Q+
Sbjct: 514 GFYESNKLEEVVQLLHRMAQKDVSPDAITCSIVVDMLSKDEKYQECLHLLPRFPI---QK 570
Query: 480 EVDE 483
VD+
Sbjct: 571 GVDK 574
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/449 (45%), Positives = 277/449 (61%), Gaps = 12/449 (2%)
Query: 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80
PD +T LI LC +RI E A + G PDV T+TTL+ GLC I A L
Sbjct: 124 PDLLTLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKL 183
Query: 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK------NIKPNV 134
F M + C PN VTY T+I GLC G ++ A + +M + N +PNV
Sbjct: 184 FMRMQK------LGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNV 237
Query: 135 VTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 194
++Y+ +I G C +W EA LF EM+DQGVQPNVVTF+V++D LCK G++ +A +LL++
Sbjct: 238 ISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEM 297
Query: 195 MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE 254
MIQ G+ P+ FTY +L+ GFCL G +N AKELFVSM S G + V SY++LINGYCK +
Sbjct: 298 MIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLK 357
Query: 255 IEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRT 314
+E A+ L++EML G+ PDV L LF +V+ A +LF ++ + D
Sbjct: 358 VEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCI 417
Query: 315 FIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV 374
F+DGLCKNGYI EA++LF+ L + DI + LIDGLCK+G+LE A ELF L
Sbjct: 418 FLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLETAWELFEKLYEEG 477
Query: 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVI 434
+ P+ + YS MI G C GQ+DKA LF MEEN P++IT+ +L+RGF N+ KV+
Sbjct: 478 IQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVV 537
Query: 435 ELLHKMKEINVMPDASIVSIVVDLLAKNE 463
+LLH+M E +V PD I +IV D++ K+E
Sbjct: 538 QLLHRMIEKDVWPDDGIYAIVEDMVCKDE 566
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa] gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 190/465 (40%), Positives = 292/465 (62%), Gaps = 9/465 (1%)
Query: 3 RVSH---GFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF 59
R++H VLG++ K PDA+TF +LI G C E I EA LF ++ G +PDV
Sbjct: 139 RLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMVRRGHQPDVI 198
Query: 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAK 119
+Y+T++NGLC++ +T +AL L +M C+PN V YTTIID LCK+ V+ A
Sbjct: 199 SYSTVINGLCKSGNTSMALQLLRKMEEKG------CKPNLVAYTTIIDSLCKDTLVNDAM 252
Query: 120 ELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 179
+LL +M D+ I P+VVTY++++ GFC NEA LF EM+ + V PN VTF +++D L
Sbjct: 253 DLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGL 312
Query: 180 CKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV 239
CK G + EA + + M + G P+A+TYN L+DG+CL +++ A+++ M GC V
Sbjct: 313 CKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVV 372
Query: 240 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDE 299
SY+ILINGYCK + ++ A SL EM K + PD V ++TL GL ++ + + A LF E
Sbjct: 373 HSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKE 432
Query: 300 MQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGR 359
M +G+ D TY T +DGLCK+G++ EA++L +++ K E DI YN LI+G+ +G+
Sbjct: 433 MCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGK 492
Query: 360 LEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDM 419
LE+A ELF L + P + TY+IMI GL +G D+A +LF ME++ +PN ++++
Sbjct: 493 LEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNV 552
Query: 420 LIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI 464
+I+GF++ + S I L+ +M D+S +++DL +++EI
Sbjct: 553 IIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLDLESRDEI 597
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa] gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 191/464 (41%), Positives = 290/464 (62%), Gaps = 6/464 (1%)
Query: 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFT 60
+ V VLG++ K PDA+TF +LI GLC E +I EA LF ++ G EP+V +
Sbjct: 141 LNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVIS 200
Query: 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE 120
YTT++NGLC+T +T +A+++F++M NG C+PN VTY+TIID LCK+ V+ A E
Sbjct: 201 YTTVINGLCKTGNTSMAVDVFKKMEQ-NG-----CKPNVVTYSTIIDSLCKDRLVNDAME 254
Query: 121 LLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180
L +M ++ I PNV TY S++ GFC NEA RLF EM+ + V PN VTF +++D LC
Sbjct: 255 FLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLC 314
Query: 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240
K G + EA + + M + GV PD TYN L+DG+CL +N AK++F M GC
Sbjct: 315 KEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAH 374
Query: 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM 300
SY+ILINGYCK++ ++ A SL +EM K + PD V ++TL GL ++ + + A LF EM
Sbjct: 375 SYNILINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEM 434
Query: 301 QRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRL 360
G + TY +DG CK+G++ EA++L +++ K E +I Y LI+G+ +G+L
Sbjct: 435 CSYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKL 494
Query: 361 EIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDML 420
E+A ELF L P++ TY++MI GL +G D+A DLF ME++ +PN +++++
Sbjct: 495 EVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVM 554
Query: 421 IRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI 464
I+GF++ + S I L+ +M + S +++DL +++EI
Sbjct: 555 IQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLDLESQDEI 598
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 487 | ||||||
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.926 | 0.717 | 0.391 | 1.2e-88 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.926 | 0.715 | 0.382 | 4.7e-87 | |
| TAIR|locus:2015228 | 614 | AT1G63080 [Arabidopsis thalian | 0.926 | 0.734 | 0.371 | 2.6e-86 | |
| TAIR|locus:2203916 | 634 | AT1G62590 [Arabidopsis thalian | 0.926 | 0.711 | 0.380 | 2.6e-86 | |
| TAIR|locus:2034760 | 637 | AT1G12300 [Arabidopsis thalian | 0.948 | 0.725 | 0.365 | 2.4e-85 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.948 | 0.746 | 0.363 | 1.7e-84 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.926 | 0.715 | 0.367 | 4.4e-84 | |
| TAIR|locus:2015213 | 629 | AT1G63150 [Arabidopsis thalian | 0.919 | 0.712 | 0.376 | 3.9e-83 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.948 | 0.743 | 0.358 | 4.5e-82 | |
| TAIR|locus:1009023134 | 644 | AT1G12775 [Arabidopsis thalian | 0.946 | 0.715 | 0.346 | 4.2e-79 |
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 885 (316.6 bits), Expect = 1.2e-88, P = 1.2e-88
Identities = 179/457 (39%), Positives = 278/457 (60%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++ + P+ VTF +LI GL ++ EA AL ++ GC+PD+FTY
Sbjct: 165 RISEAVALVDQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYG 224
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
T+VNGLC+ +AL+L ++M G E + V YTTIID LC V+ A L
Sbjct: 225 TVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLF 278
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M +K I+PNVVTY S+IR C W++A RL +M+++ + PNVVTF+ ++D K
Sbjct: 279 TEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 338
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C V +Y
Sbjct: 339 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI G+CK K +E + L+ EM +G+ + V +NTL GLF+ + A K+F +M
Sbjct: 399 NTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVS 458
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV D TY +DGLCK G + +A+ +F L+ K E DI YN +I+G+CK+G++E
Sbjct: 459 DGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVED 518
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF SL + PNV+ Y+ MI G C G ++A LF +M+E+ +PN T++ LIR
Sbjct: 519 GWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ + DAS +S+V+++L
Sbjct: 579 ARLRDGDKAASAELIKEMRSCGFVGDASTISMVINML 615
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 175/457 (38%), Positives = 274/457 (59%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++G++++ + PD+ TF +LI GL +R EA AL ++ V GC+PD+ TY
Sbjct: 166 RISDAVSLVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYG 225
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
+VNGLC+ +AL+L ++M G EP V Y TIID LC V+ A L
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGK------IEPGVVIYNTIIDALCNYKNVNDALNLF 279
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M +K I+PNVVTY S+IR C W++A RL +M+++ + PNVVTF+ ++D K
Sbjct: 280 TEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKE 339
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L D MI+ + PD FTY++L++GFC+ R++ AK +F M S C V +Y
Sbjct: 340 GKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 399
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI G+CK K ++ + L+ EM +G+ + V + TL G F+ + + A +F +M
Sbjct: 400 NTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVS 459
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV D TY +DGLC NG + A+ +F L+ K E DI YN +I+G+CK+G++E
Sbjct: 460 DGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVED 519
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF SL + PNVVTY+ M+ G C G ++A LF +M+E +P+ T++ LIR
Sbjct: 520 GWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ + DAS + +V ++L
Sbjct: 580 AHLRDGDKAASAELIREMRSCRFVGDASTIGLVTNML 616
|
|
| TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 170/457 (37%), Positives = 274/457 (59%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++++ + PD VTFT+L+ GL ++ EA AL ++ V GC+PD+ TY
Sbjct: 150 RISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYG 209
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
++NGLC+ +ALNL +M G E + V Y+T+ID LCK VD A L
Sbjct: 210 AVINGLCKRGEPDLALNLLNKMEKGK------IEADVVIYSTVIDSLCKYRHVDDALNLF 263
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M +K I+P+V TY+S+I C W++A RL +M+++ + PNVVTFN ++D K
Sbjct: 264 TEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKE 323
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L D MIQ + P+ TYN+L++GFC+ R++ A+++F M S C V +Y
Sbjct: 324 GKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 383
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LING+CK K++ + L+ +M +G+ + V + TL G F+ + A +F +M
Sbjct: 384 NTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVS 443
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV + TY T +DGLCKNG + +A+ +F L+ K E DI YN + +G+CK+G++E
Sbjct: 444 DGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVED 503
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF SL + P+V+ Y+ MI G C G ++A LF+ M+E+ +P+ T++ LIR
Sbjct: 504 GWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNTLIR 563
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ DAS +V D+L
Sbjct: 564 AHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTDML 600
|
|
| TAIR|locus:2203916 AT1G62590 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 2.6e-86, P = 2.6e-86
Identities = 174/457 (38%), Positives = 277/457 (60%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++++ + PD +TFT+LI GL ++ EA AL ++ GC+P++ TY
Sbjct: 170 RISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
+VNGLC+ T +ALNL +M E + E + V + TIID LCK VD A L
Sbjct: 230 VVVNGLCKRGDTDLALNLLNKM-----EAAKI-EADVVIFNTIIDSLCKYRHVDDALNLF 283
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M+ K I+PNVVTY+S+I C W++A +L +M+++ + PN+VTFN ++D K
Sbjct: 284 KEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKE 343
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK EA +L D MI+ + PD FTYN+L++GFC+ R++ AK++F M S C V +Y
Sbjct: 344 GKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTY 403
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI G+CK+K +E L+ EM +G+ D V + TL GLF + A K+F +M
Sbjct: 404 NTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVS 463
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV D TY +DGLC NG + +A+E+F ++ + + DI Y ++I+G+CK+G+++
Sbjct: 464 DGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMCKAGKVDD 523
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF SL + PNVVTY+ MI GLC+ + +A L M+E+ +PN T++ LIR
Sbjct: 524 GWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNTLIR 583
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ + DAS + +V ++L
Sbjct: 584 AHLRDGDKAASAELIREMRSCRFVGDASTIGLVANML 620
|
|
| TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 854 (305.7 bits), Expect = 2.4e-85, P = 2.4e-85
Identities = 171/468 (36%), Positives = 271/468 (57%)
Query: 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTY 61
GRVS ++ R+++ PD +T +L+ GLC + EA L K+ +GC+P+ TY
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231
Query: 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL 121
++N +C++ T +A+ L +M N + + V Y+ IIDGLCK G +D A L
Sbjct: 232 GPVLNVMCKSGQTALAMELLRKMEERNIKL------DAVKYSIIIDGLCKHGSLDNAFNL 285
Query: 122 LLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181
+M+ K I N++TY +I GFC A W++ +L +M+ + + PNVVTF+V++D K
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345
Query: 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241
GK+ EA L MI G+ PD TY +L+DGFC ++ A ++ M S GC + +
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405
Query: 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301
++ILINGYCK I+ L L+ +M +G+ D V +NTL G E+ ++ A +LF EM
Sbjct: 406 FNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMV 465
Query: 302 RNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLE 361
V + TY+ +DGLC NG +A+E+F + K E DI YN +I G+C + +++
Sbjct: 466 SRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 525
Query: 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLI 421
A +LF SLP + P V TY+IMIGGLC G + +A LF MEE+ P+ T+++LI
Sbjct: 526 DAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNILI 585
Query: 422 RGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSL 469
R + + +K ++L+ ++K DAS + +V+D+L+ + + L
Sbjct: 586 RAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVIDMLSDGRLKKSFL 633
|
|
| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 1.7e-84, P = 1.7e-84
Identities = 170/468 (36%), Positives = 278/468 (59%)
Query: 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTY 61
GRVS ++ R+++ PD VT ++LI GLC + R+ EA L ++ +G +PD TY
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213
Query: 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL 121
++N LC++ ++ +AL+LF +M N + + V Y+ +ID LCK+G D A L
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERN------IKASVVQYSIVIDSLCKDGSFDDALSL 267
Query: 122 LLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181
+M+ K IK +VVTY+S+I G C W++ ++ EM+ + + P+VVTF+ ++D K
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327
Query: 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241
GK+ EA L + MI G+ PD TYN+L+DGFC ++ A ++F M S GC+ + +
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387
Query: 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301
YSILIN YCK K ++ + L+ E+ SKG+ P+ + +NTL +G + ++ A +LF EM
Sbjct: 388 YSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMV 447
Query: 302 RNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLE 361
GV TY +DGLC NG + +A+E+F ++ + I YN +I G+C + +++
Sbjct: 448 SRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVD 507
Query: 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLI 421
A LF SL + P+VVTY++MIGGLC G + +A LF M+E+ P+ T+++LI
Sbjct: 508 DAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILI 567
Query: 422 RGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSL 469
R + + +EL+ +MK D+S + +V+D+L+ + + L
Sbjct: 568 RAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVIDMLSDRRLDKSFL 615
|
|
| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 168/457 (36%), Positives = 270/457 (59%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++ + + P+ VTF +LI GL ++ EA AL ++ GC+PD+ TY
Sbjct: 166 RISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYG 225
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
+VNGLC+ T +A NL +M G EP + Y TIIDGLCK +D A L
Sbjct: 226 VVVNGLCKRGDTDLAFNLLNKMEQGK------LEPGVLIYNTIIDGLCKYKHMDDALNLF 279
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M+ K I+PNVVTY+S+I C W++A RL +M+++ + P+V TF+ ++D K
Sbjct: 280 KEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKE 339
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L D M++ + P TY++L++GFC+ R++ AK++F M S C V +Y
Sbjct: 340 GKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 399
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LI G+CK K +E + ++ EM +G+ + V +N L GLF+ + A ++F EM
Sbjct: 400 NTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVS 459
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
+GV + TY T +DGLCKNG + +A+ +F L+ K E I YN +I+G+CK+G++E
Sbjct: 460 DGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVED 519
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+LF +L + P+VV Y+ MI G C G ++A LF +M+E+ +PN ++ LIR
Sbjct: 520 GWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 579
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + EL+ +M+ DAS + +V ++L
Sbjct: 580 ARLRDGDREASAELIKEMRSCGFAGDASTIGLVTNML 616
|
|
| TAIR|locus:2015213 AT1G63150 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 3.9e-83, P = 3.9e-83
Identities = 172/457 (37%), Positives = 271/457 (59%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
R+S ++ ++++ + PD TFT+LI GL ++ EA AL ++ GC+PD+ TY
Sbjct: 168 RISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYG 227
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
T+VNGLC+ +ALNL +M + N V + TIID LCK V+ A +L
Sbjct: 228 TVVNGLCKRGDIDLALNLLNKMEAAR------IKANVVIFNTIIDSLCKYRHVEVAVDLF 281
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M+ K I+PNVVTY S+I C W++A RL M+++ + PNVVTFN ++D K
Sbjct: 282 TEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKE 341
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +L + MIQ + PD TYN L++GFC+ R++ AK++F M S C + +Y
Sbjct: 342 GKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTY 401
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ LING+CK K +E + L+ EM +G+ + V + T+ G F+ + A +F +M
Sbjct: 402 NTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVS 461
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
N V D TY + GLC G + A+ +F L+ + E +I YN++I+G+CK+G++
Sbjct: 462 NRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIYNTMIEGMCKAGKVGE 521
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
A +LF SL + P+VVTY+ MI GLC+ + +A DLF M+E+ +PN T++ LIR
Sbjct: 522 AWDLFCSLS---IKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIR 578
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459
+R + + EL+ +M+ + DAS +S+V ++L
Sbjct: 579 ANLRDCDRAASAELIKEMRSSGFVGDASTISLVTNML 615
|
|
| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 823 (294.8 bits), Expect = 4.5e-82, P = 4.5e-82
Identities = 168/468 (35%), Positives = 271/468 (57%)
Query: 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTY 61
GRVS ++ R+++ P +T +L+ GLC ++ +A L ++ G +P+ TY
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215
Query: 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL 121
++ +C++ T +A+ L +M + + V Y+ IIDGLCK+G +D A L
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKL------DAVKYSIIIDGLCKDGSLDNAFNL 269
Query: 122 LLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181
+M+ K K +++ YT++IRGFCYA W++ +L +M+ + + P+VV F+ ++D K
Sbjct: 270 FNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVK 329
Query: 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241
GK+ EA L MIQ G+ PD TY +L+DGFC +++ A + M S GC + +
Sbjct: 330 EGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRT 389
Query: 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301
++ILINGYCK I+ L L+ +M +G+ D V +NTL G E+ ++E A +LF EM
Sbjct: 390 FNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMV 449
Query: 302 RNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLE 361
V D +Y+ +DGLC NG +A+E+F + K E DI YN +I G+C + +++
Sbjct: 450 SRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVD 509
Query: 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLI 421
A +LF SLP + P+V TY+IMIGGLC G + +A LF MEE+ PN T+++LI
Sbjct: 510 DAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILI 569
Query: 422 RGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSL 469
R + + +K +L+ ++K DAS V +VVD+L+ + + L
Sbjct: 570 RAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVDMLSDGRLKKSFL 617
|
|
| TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 795 (284.9 bits), Expect = 4.2e-79, P = 4.2e-79
Identities = 162/467 (34%), Positives = 267/467 (57%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYT 62
RVS ++ R+++ P +T +L+ GLC ++ +A L ++ G +P+ TY
Sbjct: 173 RVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYG 232
Query: 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELL 122
++N +C++ T +A+ L +M N + + V Y+ IIDGLCK+G +D A L
Sbjct: 233 PVLNVMCKSGQTALAMELLRKMEERNIKL------DAVKYSIIIDGLCKDGSLDNAFNLF 286
Query: 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182
+M+ K K +++TY ++I GFC A W++ +L +M+ + + PNVVTF+V++D K
Sbjct: 287 NEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKE 346
Query: 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
GK+ EA +LL M+Q G+ P+ TYN+L+DGFC R+ A ++ M S GC + ++
Sbjct: 347 GKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTF 406
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302
+ILINGYCK I+ L L+ EM +G+ + V +NTL G + ++E A KLF EM
Sbjct: 407 NILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVS 466
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362
V D +Y+ +DGLC NG + +A+E+F + K E DI Y +I G+C + +++
Sbjct: 467 RRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDD 526
Query: 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422
A +LF SLP + + Y+IMI LC + KA LF M E P+ +T+++LIR
Sbjct: 527 AWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEEGHAPDELTYNILIR 586
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSL 469
+ ++ + EL+ +MK D S V +V+++L+ E+ + L
Sbjct: 587 AHLGDDDATTAAELIEEMKSSGFPADVSTVKMVINMLSSGELDKSFL 633
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 487 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-33 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-32 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-29 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-20 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-19 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-18 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 9e-18 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-17 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-11 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 8e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-06 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 3e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 2e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 3e-33
Identities = 111/445 (24%), Positives = 188/445 (42%), Gaps = 76/445 (17%)
Query: 1 MGRVSHGFVVLGRILKSCFT----PDAVTFTSLIK-----------GLCAESRIMEAAAL 45
M ++ H + K+C +A F LI+ +CA S+ ++ A
Sbjct: 404 MDKIYHA-----KFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGA-- 456
Query: 46 FTKLRVF------GCEPDVFTYTTLVNGLCRTSHTIVAL-NLFEEMANGNGEFGVVCEPN 98
LRV G + D YTTL++ C S + A+ +F EM N GV E N
Sbjct: 457 ---LRVLRLVQEAGLKADCKLYTTLIST-CAKSGKVDAMFEVFHEMVNA----GV--EAN 506
Query: 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158
T+ +IDG + G V KA M+ KN+K
Sbjct: 507 VHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK--------------------------- 539
Query: 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI--QHGVRPDAFTYNTLLDGFCL 216
P+ V FN ++ ++G +D A +L M H + PD T L+
Sbjct: 540 --------PDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591
Query: 217 TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI 276
G+V+ AKE++ + K T Y+I +N + + + ALS+Y +M KG+KPD V
Sbjct: 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVF 651
Query: 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLR 336
+ L +++AF++ + ++ G+ T +Y + + +A+EL+ ++
Sbjct: 652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711
Query: 337 ILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMD 396
+K + N+LI LC+ +L ALE+ + L PN +TYSI++ D
Sbjct: 712 SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD 771
Query: 397 KARDLFLDMEENAVVPNVITFDMLI 421
DL +E+ + PN++ +
Sbjct: 772 VGLDLLSQAKEDGIKPNLVMCRCIT 796
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 1e-32
Identities = 104/434 (23%), Positives = 188/434 (43%), Gaps = 60/434 (13%)
Query: 34 CAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGV 93
C + R ++ A F KL P + T+ L++ +C +S I +G V
Sbjct: 416 CKKQRAVKEAFRFAKLIR---NPTLSTFNMLMS-VCASSQDI------------DGALRV 459
Query: 94 V-------CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY 146
+ + + YTT+I K G VD E+ +M + ++ NV T+ ++I G
Sbjct: 460 LRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR 519
Query: 147 AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI--QHGVRPDA 204
A +A + M + V+P+ V FN ++ ++G +D A +L M H + PD
Sbjct: 520 AGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH 579
Query: 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSE 264
T L+ G+V+ AKE++ + K T Y+I +N + + + ALS+Y +
Sbjct: 580 ITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDD 639
Query: 265 MLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGY 324
M KG+KPD V + L +++AF++ + + K G
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDAR-------------------KQGI 680
Query: 325 IVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSI 384
+ V +Y+SL+ + + ALEL+ + L P V T +
Sbjct: 681 KLGTV----------------SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA 724
Query: 385 MIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444
+I LC Q+ KA ++ +M+ + PN IT+ +L+ R ++ ++LL + KE
Sbjct: 725 LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784
Query: 445 VMPDASIVSIVVDL 458
+ P+ + + L
Sbjct: 785 IKPNLVMCRCITGL 798
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 4e-29
Identities = 78/346 (22%), Positives = 149/346 (43%), Gaps = 34/346 (9%)
Query: 8 FVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAA-ALFTKLRVFGCEPDVFTYTTLVN 66
VL + ++ D +T+LI CA+S ++A +F ++ G E +V T+ L++
Sbjct: 457 LRVLRLVQEAGLKADCKLYTTLIST-CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515
Query: 67 GLCRTSHTIVALN---------------LFEEMANGNGEFGVV----------------C 95
G R A +F + + G+ G V
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575
Query: 96 EPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKR 155
+P+ +T ++ G VD+AKE+ + + NIK YT + DW+ A
Sbjct: 576 DPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALS 635
Query: 156 LFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC 215
++ +M +GV+P+ V F+ ++D G +D+A +L + G++ +Y++L+
Sbjct: 636 IYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS 695
Query: 216 LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 275
A EL+ ++S+ + TV + + LI C+ ++ AL + SEM G+ P+ +
Sbjct: 696 NAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTI 755
Query: 276 IHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321
++ L V + L + + +G+ + R I GLC
Sbjct: 756 TYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRC-ITGLCL 800
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 5e-21
Identities = 116/497 (23%), Positives = 202/497 (40%), Gaps = 84/497 (16%)
Query: 13 RILKSCFTPDAVTFTSLIK---GLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC 69
R+L + PD TF +++ G+ +R E A + FG E DV L+
Sbjct: 177 RMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR---FGFELDVDVVNALITMYV 233
Query: 70 RTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN 129
+ + A +F+ M + +++ +I G + G + EL M++ +
Sbjct: 234 KCGDVVSARLVFDRMP----------RRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 130 IKPNVVTYTSVI---------------------RGFC--------------YAKDWNEAK 154
+ P+++T TSVI GF W EA+
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 155 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGF 214
++F M + + V++ ++ KNG D+A LM Q V PD T ++L
Sbjct: 344 KVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 215 CLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 274
G ++ +L E G V + LI Y K K I+ AL ++ + K DV
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DV 455
Query: 275 VIHNTLFVGLFEIHQVERAFKLFDEM----QRNGVAADTWTYRTFIDGL---CKNGYIVE 327
+ ++ GL ++ A F +M + N V T I L + G ++
Sbjct: 456 ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSV--------TLIAALSACARIGALMC 507
Query: 328 AVELFHTLRILKCEFDIRAY--NSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIM 385
E+ H +L+ + N+L+D + GR+ A F S +VV+++I+
Sbjct: 508 GKEI-HA-HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHE-----KDVVSWNIL 560
Query: 386 IGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE-IN 444
+ G G+ A +LF M E+ V P+ +TF L+ R ++ +E H M+E +
Sbjct: 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS 620
Query: 445 VMPDASIVSIVVDLLAK 461
+ P+ + VVDLL +
Sbjct: 621 ITPNLKHYACVVDLLGR 637
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 82.1 bits (204), Expect = 9e-20
Identities = 26/49 (53%), Positives = 36/49 (73%)
Query: 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145
P+ VTY T+IDG CK+G V++A +L +MK + IKPNV TY+ +I G C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 91.9 bits (228), Expect = 2e-19
Identities = 69/312 (22%), Positives = 133/312 (42%), Gaps = 34/312 (10%)
Query: 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80
PD +T +L+K ++ A ++ + + + YT VN + AL++
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636
Query: 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV 140
+++M + GV P+ V ++ ++D G +DKA E+L + + IK V+Y+S+
Sbjct: 637 YDDMK----KKGVK--PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSL 690
Query: 141 IRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV 200
+ AK+W +A L+ ++ ++P V T N ++ LC+ ++ +A +L M + G+
Sbjct: 691 MGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGL 750
Query: 201 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCK--------- 251
P+ TY+ LL + +L + G K + + G C
Sbjct: 751 CPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRRFEKACAL 809
Query: 252 ---------------NKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKL 296
NK AL +Y E +S G P + + + + L H +L
Sbjct: 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRL 869
Query: 297 FDEMQRNGVAAD 308
+ + G++AD
Sbjct: 870 IENL---GISAD 878
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 1e-18
Identities = 22/49 (44%), Positives = 37/49 (75%)
Query: 167 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC 215
P+VVT+N ++D CK GK++EA +L + M + G++P+ +TY+ L+DG C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 3e-18
Identities = 76/323 (23%), Positives = 128/323 (39%), Gaps = 55/323 (17%)
Query: 134 VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 193
TY +++ K K ++ + G +P+ N ++ K G + +A RL D
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182
Query: 194 LMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSMESMG--CKHTVFSYSI----- 244
M P+ ++ T++ G G A LF M G + F +
Sbjct: 183 EM------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAG 236
Query: 245 ----------------------------LINGYCKNKEIEGALSLYSEMLSKGIKPDVVI 276
LI+ Y K +IE A ++ M K V
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVA 292
Query: 277 HNTLFVGLFEIH-QVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTL 335
N++ G + +H E A L+ EM+ +GV+ D +T+ I + ++E + H
Sbjct: 293 WNSMLAG-YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMI-RIFSRLALLEHAKQAHAG 350
Query: 336 RILK-CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ 394
I DI A +L+D K GR+E A +F +P N+++++ +I G N G+
Sbjct: 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGR 406
Query: 395 MDKARDLFLDMEENAVVPNVITF 417
KA ++F M V PN +TF
Sbjct: 407 GTKAVEMFERMIAEGVAPNHVTF 429
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 86.1 bits (213), Expect = 9e-18
Identities = 93/408 (22%), Positives = 163/408 (39%), Gaps = 98/408 (24%)
Query: 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLR---------- 50
+GR HG+VV K+ F D SLI+ + EA +F+++
Sbjct: 306 LGREMHGYVV-----KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAM 360
Query: 51 VFGCE----PD--VFTYTTL-VNGLCRTSHTIVA-------LNLFE------EMANGNGE 90
+ G E PD + TY + + + TI + L + E+A G
Sbjct: 361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420
Query: 91 FGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150
V N +I+ K +DKA E+ + +K+ V+++TS+I G
Sbjct: 421 ISYVVVANA-----LIEMYSKCKCIDKALEVFHNIPEKD----VISWTSIIAGLRLNNRC 471
Query: 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTL 210
EA +F M ++PN VT + + G + + +++ G+ D F N L
Sbjct: 472 FEA-LIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNAL 530
Query: 211 LDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 270
LD + GR+N+A F S + V S++IL+ GY + + A+ L++ M+ G+
Sbjct: 531 LDLYVRCGRMNYAWNQFNS-----HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585
Query: 271 KPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC---KNGYIVE 327
PD V TFI LC ++G + +
Sbjct: 586 NPDEV--------------------------------------TFISLLCACSRSGMVTQ 607
Query: 328 AVELFHTLRILKCEFDI----RAYNSLIDGLCKSGRLEIALELFRSLP 371
+E FH++ + ++ I + Y ++D L ++G+L A +P
Sbjct: 608 GLEYFHSM---EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP 652
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-17
Identities = 89/452 (19%), Positives = 171/452 (37%), Gaps = 75/452 (16%)
Query: 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR---------------- 70
S ++ LC+ ++ +A L ++ D Y L LC
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRAL 113
Query: 71 TSHTIVALNL----------FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE 120
+SH + + L F E+ + FG + E + ++ ++ G K G+ D+A
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALC 173
Query: 121 LLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180
L +M ++P+V T+ V+R D + + ++ G + +V N ++
Sbjct: 174 LYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYV 233
Query: 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240
K G + A + D M R D ++N ++ G+ G ELF +M + +
Sbjct: 234 KCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM 289
Query: 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM 300
+ + +I+ + ++ ++ G DV + N+L + A K+F M
Sbjct: 290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRM 349
Query: 301 QRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI--------------LKC------ 340
+ +WT I G KNG +A+E + + C
Sbjct: 350 ETKDAV--SWT--AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDL 405
Query: 341 -------EFDIRA--------YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIM 385
E R N+LI+ K ++ ALE+F ++P +V++++ +
Sbjct: 406 DVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSI 461
Query: 386 IGGLCNDGQMDKARDLFLDMEENAVVPNVITF 417
I GL + + +A F M + PN +T
Sbjct: 462 IAGLRLNNRCFEALIFFRQMLLT-LKPNSVTL 492
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 73.6 bits (182), Expect = 1e-16
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 132 PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181
P+VVTY ++I G+C EA +LF EM +G++PNV T+++++D LCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 72.1 bits (178), Expect = 3e-16
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 202 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCK 251
PD TYNTL+DG+C G+V A +LF M+ G K V++YSILI+G CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 6e-16
Identities = 100/479 (20%), Positives = 184/479 (38%), Gaps = 70/479 (14%)
Query: 19 FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVAL 78
FT A T+ +L++ A I A++ + G EPD + ++ + I A
Sbjct: 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDAR 178
Query: 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYT 138
LF+EM E N ++ TII GL G +A L +M + T+
Sbjct: 179 RLFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 139 SVIR---------------------GFC------------YAK--DWNEAKRLFIEMMDQ 163
++R G Y+K D +A+ +F D
Sbjct: 229 VMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF----DG 284
Query: 164 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 223
+ V +N ++ +G +EA L M GV D FT++ ++ F + HA
Sbjct: 285 MPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHA 344
Query: 224 KELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVG 283
K+ + G + + + L++ Y K +E A +++ M K +++ N L G
Sbjct: 345 KQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAG 400
Query: 284 LFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTL-RILKCEF 342
+ +A ++F+ M GVA + T+ + +G + E+F ++ + +
Sbjct: 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP 460
Query: 343 DIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL- 401
Y +I+ L + G L+ A + R P P V M L ++ K +L
Sbjct: 461 RAMHYACMIELLGREGLLDEAYAMIRRAP---FKPTVN----MWAALLTACRIHKNLELG 513
Query: 402 ------FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSI 454
M + V+ ++ R E +KV+E L K K +++ P + + +
Sbjct: 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSG-RQAEAAKVVETL-KRKGLSMHPACTWIEV 570
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 69.7 bits (172), Expect = 2e-15
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGF 424
P+VVTY+ +I G C G++++A LF +M++ + PNV T+ +LI G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 7e-15
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 272 PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321
PDVV +NTL G + +VE A KLF+EM++ G+ + +TY IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.7 bits (159), Expect = 1e-13
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 343 DIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN 391
D+ YN+LIDG CK G++E AL+LF + + PNV TYSI+I GLC
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 3e-13
Identities = 25/56 (44%), Positives = 31/56 (55%), Gaps = 6/56 (10%)
Query: 56 PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK 111
PDV TY TL++G C+ AL LF EM +PN TY+ +IDGLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG------IKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 5e-13
Identities = 21/50 (42%), Positives = 36/50 (72%)
Query: 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR 70
PD VT+ +LI G C + ++ EA LF +++ G +P+V+TY+ L++GLC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 2e-12
Identities = 22/46 (47%), Positives = 33/46 (71%)
Query: 239 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGL 284
V +Y+ LI+GYCK ++E AL L++EM +GIKP+V ++ L GL
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 56.2 bits (137), Expect = 8e-11
Identities = 18/32 (56%), Positives = 25/32 (78%)
Query: 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMK 126
+P+ VTY T+IDGLC+ G VD+A ELL +M+
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.1 bits (129), Expect = 1e-09
Identities = 17/33 (51%), Positives = 27/33 (81%)
Query: 163 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM 195
+G++P+VVT+N ++D LC+ G++DEA LLD M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 8e-09
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 240 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 274
+Y+ LI+G CK +E AL L+ EM +GI+PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 50.4 bits (122), Expect = 1e-08
Identities = 19/33 (57%), Positives = 23/33 (69%)
Query: 199 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 231
G++PD TYNTL+DG C GRV+ A EL ME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (120), Expect = 2e-08
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDME 406
L P+VVTY+ +I GLC G++D+A +L +ME
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.5 bits (117), Expect = 5e-08
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 52 FGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEM 84
G +PDV TY TL++GLCR A+ L +EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 9e-08
Identities = 20/35 (57%), Positives = 28/35 (80%)
Query: 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV 134
VTY T+IDGLCK G V++A EL +MK++ I+P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 3e-07
Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 35/231 (15%)
Query: 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT---------- 71
D +++TS+I GL +R EA F ++ + +P+ T ++ R
Sbjct: 454 DVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAALSACARIGALMCGKEIH 512
Query: 72 SHTIVA------------LNLF---EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVD 116
+H + L+L+ M +F E + V++ ++ G G
Sbjct: 513 AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVSWNILLTGYVAHGKGS 571
Query: 117 KAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ-GVQPNVVTFNVI 175
A EL +M + + P+ VT+ S++ + + F M ++ + PN+ + +
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACV 631
Query: 176 MDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 226
+D L + GK+ EA ++ M + PD + LL+ C R++ EL
Sbjct: 632 VDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA-C---RIHRHVEL 675
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 67/275 (24%), Positives = 112/275 (40%), Gaps = 43/275 (15%)
Query: 49 LRVFGCEP--DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106
L VF P DV ++T+++ GL + AL F +M + +PN+VT +
Sbjct: 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML-------LTLKPNSVTLIAAL 496
Query: 107 DGLCKEGFVDKAKE-----LLLQMKDKNIKPNVVTYTSVIRG-FCYAKDWNEAKRLFIEM 160
+ G + KE L + PN + V G YA WN+
Sbjct: 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA--WNQF------- 547
Query: 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRV 220
+ +VV++N+++ +GK A L + M++ GV PD T+ +LL +G V
Sbjct: 548 --NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMV 605
Query: 221 NHAKELFVSME-----SMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV 275
E F SME + KH Y+ +++ + ++ A + ++M I PD
Sbjct: 606 TQGLEYFHSMEEKYSITPNLKH----YACVVDLLGRAGKLTEAYNFINKM---PITPDPA 658
Query: 276 IHNTLFVGLFEIHQV----ERAFKLFDEMQRNGVA 306
+ L IH+ E A + E+ N V
Sbjct: 659 VWGALLNAC-RIHRHVELGELAAQHIFELDPNSVG 692
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 6e-07
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 128 KNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160
K +KP+VVTY ++I G C A +EA L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 7e-07
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 240 FSYSILINGYCKNKEIEGALSLYSEMLSKGI 270
+Y+ LI+GYCK ++E AL L+ EM KG+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 8e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 233 MGCKHTVFSYSILINGYCKNKEIEGALSLYSEM 265
G K V +Y+ LI+G C+ ++ A+ L EM
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 9e-07
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 135 VTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV 169
VTY ++I G C A EA LF EM ++G++P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 1e-06
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNI 130
VTY ++I G CK G +++A EL +MK+K +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 2e-06
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDA 204
VT+N ++D LCK G+++EA L M + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.3 bits (113), Expect = 3e-06
Identities = 51/260 (19%), Positives = 89/260 (34%), Gaps = 7/260 (2%)
Query: 148 KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV-RPDAFT 206
KD A + +E + + + + + L G++ EA LL+ ++ A
Sbjct: 2 KDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGL 61
Query: 207 YNTLLDGFCLTGRVNHAKELFVSMESMGCK-HTVFSYSILINGYCKNKEIEGALSLYSEM 265
L GR+ A EL + + + L + E AL L +
Sbjct: 62 LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121
Query: 266 LSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG--VAADTWTYRTFIDGLCKNG 323
L+ PD+ L+E+ E A +L+++ + L G
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181
Query: 324 YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYS 383
EA+EL L + D A +L K G+ E ALE + L P+
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYY--EKALELDPDNAEAL 239
Query: 384 IMIGG-LCNDGQMDKARDLF 402
+ L G+ ++A +
Sbjct: 240 YNLALLLLELGRYEEALEAL 259
|
Length = 291 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 4e-06
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 412 PNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAK 461
P+V+T++ LI G+ + + + ++L ++MK+ + P+ SI++D L K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 4e-06
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 380 VTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNV 414
VTY+ +I GLC G++++A +LF +M+E + P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 5e-06
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 303 NGVAADTWTYRTFIDGLCKNGYIVEAVELF 332
G+ D TY T IDGLC+ G + EAVEL
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 1e-05
Identities = 14/26 (53%), Positives = 21/26 (80%)
Query: 343 DIRAYNSLIDGLCKSGRLEIALELFR 368
D+ YN+LIDGLC++GR++ A+EL
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 17/32 (53%), Positives = 20/32 (62%)
Query: 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMGCK 236
TYNTL+DG C GRV A ELF M+ G +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIE 32
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-05
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 239 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP 272
+ +Y+ L+ K + + AL++ EM + G+KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 2e-05
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 134 VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP 167
+ TY +++ A D + A + EM G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGV 200
VT+N ++ CK GK++EA L M + GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 135 VTYTSVIRGFCYAKDWNEAKRLFIEMMDQGV 165
VTY S+I G+C A EA LF EM ++GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 3e-05
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 380 VTYSIMIGGLCNDGQMDKARDLFLDMEEN 408
VTY+ +I G C G++++A +LF +M+E
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEK 29
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMGC 235
TYN+L+ G+C G++ A ELF M+ G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 1e-04
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 268 KGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301
KG+KPDVV +NTL GL +V+ A +L DEM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 1e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRP 202
+ T+N ++ L K G D A +L+ M G++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 2e-04
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 19 FTPDAVTFTSLIKGLCAESRIMEAAALF 46
PD VT+ +LI GLC R+ EA L
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELL 30
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 7e-04
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV 58
VT+ +LI GLC R+ EA LF +++ G EPDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 16/23 (69%), Positives = 19/23 (82%)
Query: 346 AYNSLIDGLCKSGRLEIALELFR 368
YNSLI G CK+G+LE ALELF+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFK 24
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 9e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP 132
TY ++ L K G D A +L +MK +KP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 19/35 (54%), Positives = 26/35 (74%)
Query: 345 RAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV 379
YN+LIDGLCK+GR+E ALELF+ + + P+V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 34.7 bits (81), Expect = 0.003
Identities = 17/34 (50%), Positives = 22/34 (64%)
Query: 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDI 344
TY T IDGLCK G + EA+ELF ++ E D+
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.95 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.93 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.93 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.93 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.93 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.91 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.91 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.9 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.86 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.85 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.84 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.84 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.84 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.82 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.8 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.79 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.79 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.76 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.75 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.75 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.73 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.73 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.72 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.71 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.71 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.7 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.7 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.7 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.69 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.68 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.68 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.66 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.66 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.63 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.61 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.6 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.6 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.57 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.57 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.56 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.56 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.56 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.55 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.54 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.54 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.52 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.51 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.5 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.49 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.48 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.47 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.44 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.41 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.4 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.39 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.37 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.35 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.34 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.33 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.31 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.31 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.3 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.28 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.27 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.26 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.22 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.21 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.2 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.19 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.19 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.17 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.13 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.09 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.07 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 99.05 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 99.05 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.04 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.03 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.03 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.02 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.0 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.99 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.98 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.97 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.96 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.96 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.94 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.9 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.9 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.9 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.87 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.81 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.81 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.78 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.78 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.77 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.77 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.77 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.77 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.76 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.75 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.71 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.61 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.58 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.45 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.4 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.38 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.33 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.31 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.31 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.23 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.22 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.21 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.19 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.18 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.16 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.16 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.15 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.15 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 98.15 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.14 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.12 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.1 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.09 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.09 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.09 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.07 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.07 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.04 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.04 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.03 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.03 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.02 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.02 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.01 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.0 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.97 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.97 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.93 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.93 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.92 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.89 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.88 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.87 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.87 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.86 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.84 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.82 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.81 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.8 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.79 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.78 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.78 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.76 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.76 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.76 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.73 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.72 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.61 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.6 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.59 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.58 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.55 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.47 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.47 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.45 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.44 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.41 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.4 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.4 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.36 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.35 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.33 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.26 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.25 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.22 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.18 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.17 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.13 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.11 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.03 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.02 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.02 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.9 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.87 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.82 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.79 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.77 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.72 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.71 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.65 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.6 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.58 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 96.53 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.52 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.51 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.49 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.46 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.45 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.44 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.44 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.42 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.39 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.39 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.39 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.38 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.32 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.31 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.27 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.17 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.14 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.12 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.12 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.08 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.06 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.04 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.85 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.83 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.82 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.79 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.64 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.43 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.38 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.17 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.15 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.14 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.11 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 95.09 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.03 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.92 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 94.78 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.73 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 94.46 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.31 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.2 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.19 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.0 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 93.82 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.7 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.69 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.51 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.48 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.44 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 93.19 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.16 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.15 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 93.14 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 93.13 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 93.0 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 92.99 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.75 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.74 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 92.69 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 92.65 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 92.56 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 92.51 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 91.98 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 91.94 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.82 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.75 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 91.53 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 91.53 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.44 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.39 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 91.29 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.28 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 91.25 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.02 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.88 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 90.79 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.4 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 90.27 | |
| PRK09687 | 280 | putative lyase; Provisional | 90.07 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 90.0 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 89.89 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 89.15 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 89.03 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 88.99 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.6 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 88.45 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 88.26 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 88.1 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.98 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 87.57 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 87.46 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 87.42 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 87.37 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 87.35 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.25 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.14 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 87.04 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 86.68 | |
| KOG4077 | 149 | consensus Cytochrome c oxidase, subunit Va/COX6 [E | 86.27 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 86.2 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.1 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.98 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 85.75 | |
| KOG0128 | 881 | consensus RNA-binding protein SART3 (RRM superfami | 85.43 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 85.28 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.2 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 85.09 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 84.61 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 84.26 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 83.88 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 83.05 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 82.82 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 82.62 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 82.12 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 82.02 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 81.56 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 81.07 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 80.98 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 80.04 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-67 Score=507.85 Aligned_cols=455 Identities=23% Similarity=0.357 Sum_probs=433.1
Q ss_pred CCccchHHHHHHHHHhCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCF-TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+++|+.|...+. +++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.++.+|++.|+++.|.+
T Consensus 383 ~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~ 458 (1060)
T PLN03218 383 DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALR 458 (1060)
T ss_pred CcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHH
Confidence 4889999999999999985 46777888899999999999999999999873 899999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
+|+.|.+.+ +.|+..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++
T Consensus 459 lf~~M~~~G------l~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~ 532 (1060)
T PLN03218 459 VLRLVQEAG------LKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGI 532 (1060)
T ss_pred HHHHHHHcC------CCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 999999988 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC
Q 011362 160 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ--HGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKH 237 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (487)
|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.+++|
T Consensus 533 M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p 612 (1060)
T PLN03218 533 MRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG 612 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999986 6789999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 011362 238 TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (487)
+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.++.
T Consensus 613 ~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ 692 (1060)
T PLN03218 613 TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMG 692 (1060)
T ss_pred ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (487)
+|++.|++++|.++|++|...++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|++.|++++
T Consensus 693 ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 693 ACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADV 772 (1060)
T ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CChhHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 398 ARDLFLDMEENAVVPNVITFDMLIRGFIR----I-------------------NEPSKVIELLHKMKEINVMPDASIVSI 454 (487)
Q Consensus 398 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (487)
|.+++.+|.+.|+.||..+|+.++..|.+ . +..++|..+|++|++.|+.||..+|..
T Consensus 773 A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~ 852 (1060)
T PLN03218 773 GLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQ 852 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 99999999999999999999999876432 1 123679999999999999999999999
Q ss_pred HHHHHHhcccc
Q 011362 455 VVDLLAKNEIS 465 (487)
Q Consensus 455 l~~~~~~~g~~ 465 (487)
++.++.+.+..
T Consensus 853 vL~cl~~~~~~ 863 (1060)
T PLN03218 853 VLGCLQLPHDA 863 (1060)
T ss_pred HHHHhcccccH
Confidence 99888777766
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-65 Score=493.89 Aligned_cols=450 Identities=18% Similarity=0.280 Sum_probs=431.4
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|.+++|+.+|+.|.. |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|
T Consensus 420 g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf 495 (1060)
T PLN03218 420 RAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVF 495 (1060)
T ss_pred CCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 678899999988864 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
++|.+.+ +.||..+|+.+|.+|++.|++++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.
T Consensus 496 ~eM~~~G------v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~ 569 (1060)
T PLN03218 496 HEMVNAG------VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK 569 (1060)
T ss_pred HHHHHcC------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999988 7899999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H--cCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH
Q 011362 162 D--QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV 239 (487)
Q Consensus 162 ~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 239 (487)
. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|...|+.||.
T Consensus 570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence 6 57899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 011362 240 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGL 319 (487)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (487)
.+|+.++.+|++.|++++|.+++++|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.++.||..+|+.++.+|
T Consensus 650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy 729 (1060)
T PLN03218 650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL 729 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc----c---
Q 011362 320 CKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN----D--- 392 (487)
Q Consensus 320 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~--- 392 (487)
++.|++++|.++|++|...++.||..+|+.++.+|.+.|++++|.+++.+|.+.|+.||..+|+.++..|.+ +
T Consensus 730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999866432 1
Q ss_pred ----------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011362 393 ----------------GQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVV 456 (487)
Q Consensus 393 ----------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 456 (487)
+..++|..+|++|.+.|+.||..||..++.+++..+....+..+++.|...+..|+..+|..++
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li 889 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH
Confidence 2246799999999999999999999999988888899999999999999888899999999999
Q ss_pred HHHHh
Q 011362 457 DLLAK 461 (487)
Q Consensus 457 ~~~~~ 461 (487)
+++++
T Consensus 890 ~g~~~ 894 (1060)
T PLN03218 890 DGFGE 894 (1060)
T ss_pred Hhhcc
Confidence 99854
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=487.45 Aligned_cols=455 Identities=22% Similarity=0.315 Sum_probs=285.0
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|+.+|++|...|..||..+|+.++.+|...+++..+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|
T Consensus 166 g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf 245 (857)
T PLN03077 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245 (857)
T ss_pred CCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHH
Confidence 56666666666666666666655555554444444444444444444444444444444444555555555555555555
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
++|. .+|..+|+.+|.+|++.|++++|+++|++|...|+.||..+|+.++.+|.+.|+.+.|.+++..+.
T Consensus 246 ~~m~----------~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~ 315 (857)
T PLN03077 246 DRMP----------RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315 (857)
T ss_pred hcCC----------CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 5443 233444555555555555555555555555544444444444444444444444444444444444
Q ss_pred HcCCCCChhhHHHHHHHHHhC-------------------------------CChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011362 162 DQGVQPNVVTFNVIMDELCKN-------------------------------GKMDEASRLLDLMIQHGVRPDAFTYNTL 210 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~-------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 210 (487)
+.|+.||..+|+.++.+|++. |++++|+++|++|.+.|+.||..+|+.+
T Consensus 316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 444444444444444444444 4444444444444444444444444444
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCH
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQV 290 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (487)
+.+|++.|+++.|.++++.+.+.|+.++..+++.|+.+|++.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~ 471 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRC 471 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCH
Confidence 444444444444444444444444444444444444444444444445444444432 2444555555555555555
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhc
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSL 370 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (487)
++|..+|++|.. ++.||..+|..++.+|++.|..+.+.+++..+.+.|+.++..+++.|+.+|.+.|++++|.++|+.+
T Consensus 472 ~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~ 550 (857)
T PLN03077 472 FEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH 550 (857)
T ss_pred HHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc
Confidence 555555555543 3566666666666666666666666666666666666677777777788888888888888888876
Q ss_pred cCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-hcCCCCCH
Q 011362 371 PCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK-EINVMPDA 449 (487)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~ 449 (487)
.||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.|+.|+.
T Consensus 551 -----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 551 -----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred -----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCch
Confidence 578999999999999999999999999999999999999999999999999999999999999999 78999999
Q ss_pred HHHHHHHHHHHhcccccccccccccch
Q 011362 450 SIVSIVVDLLAKNEISLNSLPSFTVHE 476 (487)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~~~~~~~~~~ 476 (487)
.+|..++++|++.|++++|.+.+..+|
T Consensus 626 ~~y~~lv~~l~r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 626 KHYACVVDLLGRAGKLTEAYNFINKMP 652 (857)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHCC
Confidence 999999999999999977766665554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-61 Score=467.81 Aligned_cols=455 Identities=20% Similarity=0.288 Sum_probs=430.4
Q ss_pred CCccchHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+++|+.|...+ ..|+..+|+.++.+|.+.++++.|.+++..|.+.|+.||..+++.++.+|++.|+++.|.+
T Consensus 100 ~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~ 179 (697)
T PLN03081 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARR 179 (697)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHH
Confidence 378999999999998765 5789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
+|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|..++.+|...|..+.+.+++..
T Consensus 180 lf~~m~----------~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~ 249 (697)
T PLN03081 180 LFDEMP----------ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCC 249 (697)
T ss_pred HHhcCC----------CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 999996 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH
Q 011362 160 MMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV 239 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 239 (487)
+.+.|+.||..+++.++.+|++.|++++|.++|+.|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 250 ~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~ 325 (697)
T PLN03081 250 VLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325 (697)
T ss_pred HHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999999999999999999985 458999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 011362 240 FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGL 319 (487)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (487)
.+|+.++.+|++.|+++.|.+++..|.+.|+.|+..+++.++.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 326 ~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y 401 (697)
T PLN03081 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGY 401 (697)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 46889999999999
Q ss_pred HhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccC-CCCCCcHHHHHHHHHHHHccCCHHHH
Q 011362 320 CKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPC-GVLVPNVVTYSIMIGGLCNDGQMDKA 398 (487)
Q Consensus 320 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (487)
++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|++++|
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA 481 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence 99999999999999999999999999999999999999999999999999975 68999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccchh
Q 011362 399 RDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVHEQ 477 (487)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 477 (487)
.+++++| +..|+..+|+.++.+|...|+.+.|..+++++.+.+ +.+..+|..+++.|++.|+++++.+.+..+.+
T Consensus 482 ~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 482 YAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred HHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9998876 468999999999999999999999999999997643 23467999999999999999888777665543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=470.88 Aligned_cols=438 Identities=19% Similarity=0.323 Sum_probs=416.4
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|.++|+.|. .||..+|++++.+|.+.|++++|+++|++|...|+.||..+|+.++.+|.+.|+.+.|.++
T Consensus 235 ~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l 310 (857)
T PLN03077 235 CGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREM 310 (857)
T ss_pred CCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHH
Confidence 378899999999885 4688899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
+..+.+.+ ..|+..+|+.|+.+|++.|++++|.++|++|.. ||..+|+.++.+|.+.|++++|+++|++|
T Consensus 311 ~~~~~~~g------~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M 380 (857)
T PLN03077 311 HGYVVKTG------FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALM 380 (857)
T ss_pred HHHHHHhC------CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999988 799999999999999999999999999999864 68899999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHh
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (487)
.+.|+.||..+|+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|. .++..
T Consensus 381 ~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~v 456 (857)
T PLN03077 381 EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVI 456 (857)
T ss_pred HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 45788
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC 320 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (487)
+|+.++.+|++.|+.++|+.+|++|.. ++.||..+|..++.+|++.|+.+.+.+++..+.+.|+.++..+++.++.+|+
T Consensus 457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~ 535 (857)
T PLN03077 457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV 535 (857)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence 999999999999999999999999986 5899999999999999999999999999999999999999999999999999
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARD 400 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (487)
+.|++++|..+|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.+
T Consensus 536 k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~ 610 (857)
T PLN03077 536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE 610 (857)
T ss_pred HcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence 999999999999886 679999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH-hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 401 LFLDME-ENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 401 ~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+|+.|. +.|+.|+..+|+.++.+|.+.|+.++|.+++++|. +.||..+|..++.+|...|+.
T Consensus 611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~ 673 (857)
T PLN03077 611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHV 673 (857)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCh
Confidence 999998 67999999999999999999999999999999984 789999999999999887777
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-59 Score=451.12 Aligned_cols=429 Identities=21% Similarity=0.309 Sum_probs=410.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFG-CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+...|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++.+.+.+++..|.+.+ +.|+..
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g------~~~~~~ 159 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG------FEPDQY 159 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC------CCcchH
Confidence 45589999999999999999999999998764 67999999999999999999999999999999988 789999
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (487)
+|+.++..|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~ 235 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASA 235 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHh
Confidence 999999999999999999999999964 6999999999999999999999999999999999999999999999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHH
Q 011362 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALS 260 (487)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 260 (487)
+.|....+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.|. +++..+|+.++.+|++.|++++|.+
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~ 311 (697)
T PLN03081 236 GLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALC 311 (697)
T ss_pred cCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999996 5688999999999999999999999
Q ss_pred HHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 011362 261 LYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (487)
+|++|...|+.||..+|+.++.+|++.|++++|.+++..+.+.|+.||..+++.++.+|++.|++++|.++|++|.
T Consensus 312 lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~---- 387 (697)
T PLN03081 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP---- 387 (697)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh-CCCCCCHHHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEE-NAVVPNVITFDM 419 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ 419 (487)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.
T Consensus 388 ~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 388 RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 5789999999999999999999999999999999999999999999999999999999999999976 699999999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccc
Q 011362 420 LIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPS 471 (487)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 471 (487)
++.+|.+.|+.++|.+++++| ++.|+..+|..++.+|...|+.+.+.+.
T Consensus 468 li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 999999999999999998876 5789999999999999999998554443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=280.58 Aligned_cols=451 Identities=12% Similarity=0.042 Sum_probs=356.1
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|+.+++.+.... +++..++..++..+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+.+
T Consensus 445 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 522 (899)
T TIGR02917 445 GQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRF 522 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 56667777777776653 4466677777777888888888888888777654 445556667777777788888888888
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+++.+.. |.+..++..+...+.+.|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.
T Consensus 523 ~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 594 (899)
T TIGR02917 523 EKVLTID-------PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAA 594 (899)
T ss_pred HHHHHhC-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8877765 5567777778888888888888888888876653 3456677778888888888888888888887
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
+.. +.+...|..+..++...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...
T Consensus 595 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 671 (899)
T TIGR02917 595 DAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEA 671 (899)
T ss_pred HcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHH
Confidence 653 3466778888888888888888888888887653 3356677778888888888888888888887764 556777
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (487)
+..++..+...|++++|..+++.+....+ .+...+..+...+...|++++|...+..+.... |+..++..++.++.+
T Consensus 672 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~ 748 (899)
T TIGR02917 672 QIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLA 748 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHH
Confidence 88888888888888888888888877643 366677778888888999999999998888764 444677778888899
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
.|++++|...++.+.... +.++..+..+...|...|++++|...|+++.+.. +++..+++.++..+...|+ .+|+..
T Consensus 749 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~ 825 (899)
T TIGR02917 749 SGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEY 825 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHH
Confidence 999999999999888765 6678888889999999999999999999988764 5677888899999999999 889999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccc
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFT 473 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 473 (487)
++++.+.. +.++.++..+..++...|++++|.+.++++++.+ +.+..++..++.++.+.|+..++++.+.
T Consensus 826 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 826 AEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99998763 2356677788888999999999999999999876 4488899999999999999988877654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=272.86 Aligned_cols=450 Identities=14% Similarity=0.075 Sum_probs=209.1
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|...++.++... +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|++.+
T Consensus 343 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 420 (899)
T TIGR02917 343 GRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADL 420 (899)
T ss_pred CCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHH
Confidence 34444444444444432 2234444444444444455555555444444432 223333444444444444444444444
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+.+.+.. +........++..+.+.|++++|.++++.+... .+++..++..+...+...|++++|.+.|+++.
T Consensus 421 ~~a~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 421 ETAAQLD-------PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHHHhhC-------CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 4444332 112222333334444444444444444444432 22344455555555555555555555555555
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
+... .+...+..+...+...|++++|.++++.+.... +.+..++..+...+.+.|+.++|...++++...+ +.+...
T Consensus 493 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 569 (899)
T TIGR02917 493 SIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEP 569 (899)
T ss_pred hhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhH
Confidence 4321 133344444555555555555555555554432 1234445555555555555555555555554433 333444
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (487)
+..++..|...|++++|..+++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 647 (899)
T TIGR02917 570 ALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAV 647 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 4445555555555555555555554432 2234445555555555555555555555554432 2233444445555555
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
.|++++|..+++++.... +.+..++..++..+...|++++|..+++.+.+.+ +++...+..++..+...|++++|...
T Consensus 648 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~ 725 (899)
T TIGR02917 648 MKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQA 725 (899)
T ss_pred cCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 555555555555554432 3334444445555555555555555555544432 33334444444555555555555555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccc
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPS 471 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 471 (487)
|+++.... |+..++..++.++...|++++|.+.++++.+.. +.+...+..+...+.+.|+..++++.
T Consensus 726 ~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~ 792 (899)
T TIGR02917 726 YRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKH 792 (899)
T ss_pred HHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 55554432 222334444444445555555555555544432 33344444444444545555444333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-24 Score=221.44 Aligned_cols=451 Identities=12% Similarity=0.050 Sum_probs=257.6
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------------------C--------
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGC------------------E-------- 55 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------------------~-------- 55 (487)
|+.++|+..|+++++.. |.+...+..+...+...|++++|+..++++..... .
T Consensus 161 g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~ 239 (1157)
T PRK11447 161 AQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQ 239 (1157)
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHH
Confidence 55666666666666664 33556666666666667777777776666543210 0
Q ss_pred ------CCHHHH---------------------HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 56 ------PDVFTY---------------------TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 56 ------~~~~~~---------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|+.... ......+...|++++|+..|+++.+.. |.+...+..+..+
T Consensus 240 ~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-------P~~~~a~~~Lg~~ 312 (1157)
T PRK11447 240 KYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-------PKDSEALGALGQA 312 (1157)
T ss_pred HHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 000000 011233455666667777776666654 4456666666666
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCC-CHhhH------------HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKP-NVVTY------------TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVI 175 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 175 (487)
+.+.|++++|+..|++..+..... ....| ......+.+.|++++|+..|+++.+... .+...+..+
T Consensus 313 ~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~L 391 (1157)
T PRK11447 313 YSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYAVLGL 391 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 767777777777776666542111 11111 1123345566667777777766666532 244455556
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC--------CCCHhhHHHHHH
Q 011362 176 MDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC--------KHTVFSYSILIN 247 (487)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~~~~~~~l~~ 247 (487)
...+...|++++|++.|+++.+.... +...+..+...+. .++.++|..+++.+..... ......+..+..
T Consensus 392 g~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~ 469 (1157)
T PRK11447 392 GDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAE 469 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 66666677777777777666654221 2333333322221 1122222222222110000 000011122333
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH--------------
Q 011362 248 GYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYR-------------- 313 (487)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-------------- 313 (487)
.+...|++++|++.+++.++..+. +...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 470 ~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~ 547 (1157)
T PRK11447 470 ALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRA 547 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHH
Confidence 344455555555555555544222 33344445555555555555555555554432 11222222
Q ss_pred ------------------------------HHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 011362 314 ------------------------------TFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIA 363 (487)
Q Consensus 314 ------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 363 (487)
.....+...|+.++|..+++. .+.++..+..+...+.+.|++++|
T Consensus 548 Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A 622 (1157)
T PRK11447 548 ALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAA 622 (1157)
T ss_pred HHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHH
Confidence 233445556666666666551 255666778888889999999999
Q ss_pred HHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 364 LELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
...|+++.... +.+...+..++..+...|++++|+..++.+.+.. +.+...+..+..++...|++++|.++++++...
T Consensus 623 ~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 623 RAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 99999988763 5567888899999999999999999999887642 224566677888888999999999999998864
Q ss_pred CCC--C---CHHHHHHHHHHHHhccccccccccc
Q 011362 444 NVM--P---DASIVSIVVDLLAKNEISLNSLPSF 472 (487)
Q Consensus 444 ~~~--~---~~~~~~~l~~~~~~~g~~~~~~~~~ 472 (487)
... | +..++..+...+.+.|+..+|++.|
T Consensus 701 ~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y 734 (1157)
T PRK11447 701 AKSQPPSMESALVLRDAARFEAQTGQPQQALETY 734 (1157)
T ss_pred CccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 321 1 2245666677888888885555543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-25 Score=222.94 Aligned_cols=422 Identities=12% Similarity=0.056 Sum_probs=332.4
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CHHHH------------HHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP-DVFTY------------TTLVNG 67 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~------------~~l~~~ 67 (487)
.|++++|+..|+++++.. |.+..++..+..++.+.|++++|+..|+++.+..... ....+ ......
T Consensus 282 ~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~ 360 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDA 360 (1157)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHH
Confidence 488999999999999986 4578899999999999999999999999998764221 11111 123456
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 011362 68 LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA 147 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 147 (487)
+.+.|++++|+..|+++.+.. |.+...+..+..++...|++++|++.|+++.+.. +.+...+..+...+. .
T Consensus 361 ~~~~g~~~eA~~~~~~Al~~~-------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 361 ALKANNLAQAERLYQQARQVD-------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 778999999999999999876 5677888889999999999999999999998763 335667777777764 4
Q ss_pred CChhhHHHHHHHHHHcCCC--------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 148 KDWNEAKRLFIEMMDQGVQ--------PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
++.++|+..++.+...... .....+..+...+...|++++|+..|++.++.... +...+..+...+.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence 6789999888765432100 01223455677888999999999999999887433 67778889999999999
Q ss_pred HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccCh---------hhHHHHHHHHHhcCCH
Q 011362 220 VNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV---------VIHNTLFVGLFEIHQV 290 (487)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~ 290 (487)
+++|...++++.... +.+...+..+...+...++.++|+..++.+......++. ..+......+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998764 455666666666778899999999999876543222221 1223456678889999
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhc
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSL 370 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (487)
++|..+++. .+.+...+..+...+.+.|++++|+..|+.+.... |.++..+..++..+...|++++|...++.+
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999998872 35566677888999999999999999999999876 667889999999999999999999999988
Q ss_pred cCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC--C---CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 371 PCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVV--P---NVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
.+.. +.+..++..+..++...|++++|..+++++...... | +...+..+...+...|++++|.+.|++.+
T Consensus 664 l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 664 PATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred hccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 8652 345667778888999999999999999999875322 2 22456667888999999999999999986
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-25 Score=191.77 Aligned_cols=441 Identities=13% Similarity=0.057 Sum_probs=342.9
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|.+.-...-+.+ +.+....-.+-..+.+..+.+.....-....+.. +.-..+|..+...+-..|++++|+.++
T Consensus 62 gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y 139 (966)
T KOG4626|consen 62 GDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALY 139 (966)
T ss_pred cCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 56666666665555554 2233333334445555556655554444444332 445667888999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh-hHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV-TYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
+.+.+.. |...+.|..+..++...|+.+.|.+.|...++. .|+.. ....+.......|+.++|...|.+.
T Consensus 140 ~~aiel~-------p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkA 210 (966)
T KOG4626|consen 140 RAAIELK-------PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKA 210 (966)
T ss_pred HHHHhcC-------chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHH
Confidence 9999876 667889999999999999999999999988876 34433 3334555666789999999999888
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHh
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (487)
++.... -...|..|.-.+..+|+...|++.|++..+.... -...|..|...|...+.+++|...+.+..... +....
T Consensus 211 i~~qp~-fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~ 287 (966)
T KOG4626|consen 211 IETQPC-FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAV 287 (966)
T ss_pred HhhCCc-eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-Ccchh
Confidence 875332 3567888888899999999999999999876322 35678888999999999999999998887764 55677
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC 320 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (487)
.+..+...|...|+.+.|+..|++.++..+. -+..|+.+..++-..|++.+|.+.+.+.+... +....+.+.+...+.
T Consensus 288 a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~ 365 (966)
T KOG4626|consen 288 AHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYR 365 (966)
T ss_pred hccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence 7888888899999999999999999886433 35689999999999999999999999998863 445678889999999
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH-HHHHHHHHHHHccCCHHHHH
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV-VTYSIMIGGLCNDGQMDKAR 399 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~ 399 (487)
..|.+++|..+|....+.. +.-....+.|...|-++|++++|+..|++.+. +.|+. ..|+.+...|-..|+.+.|.
T Consensus 366 E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHH
Confidence 9999999999999988764 44456788999999999999999999999987 46764 68999999999999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHhcccc
Q 011362 400 DLFLDMEENAVVPN-VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA-SIVSIVVDLLAKNEIS 465 (487)
Q Consensus 400 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~ 465 (487)
..+.+++.. .|. ...++.|...|..+|+..+|++.|+..+.. +||. ..+-.++-++.=...|
T Consensus 443 q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 443 QCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred HHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHHHHHhcc
Confidence 999999884 455 467788999999999999999999999874 5653 4444444444333333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-24 Score=187.72 Aligned_cols=425 Identities=15% Similarity=0.137 Sum_probs=350.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
...|..-..+.|++.+|.+.-...-..+ +.+......+-..+....+.+.....-....+.. +.-.++|..+
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-------~q~ae~ysn~ 122 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-------PQGAEAYSNL 122 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-------chHHHHHHHH
Confidence 3456667778899999998777665543 3333344445566677777777666655555554 5678999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH-HHHHHHHHhCCC
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTF-NVIMDELCKNGK 184 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~ 184 (487)
...+-..|+++.|+..++.+.+.. +-.+..|..+..++...|+.+.|.+.|.+.++. .|+.... ..+...+-..|+
T Consensus 123 aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 123 ANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred HHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcc
Confidence 999999999999999999999874 336889999999999999999999999999885 4554433 334455566899
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHH
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSE 264 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (487)
.++|...+.+.++... --...|..|...+-..|+...|+..|++..+.+ |.-...|..|...|...+.++.|+..|.+
T Consensus 200 l~ea~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~r 277 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLR 277 (966)
T ss_pred cchhHHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHH
Confidence 9999999988887632 235678889999999999999999999999875 44567899999999999999999999999
Q ss_pred HHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC
Q 011362 265 MLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD-TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFD 343 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 343 (487)
.....+. ....+..+...|...|+.+-|+..+++.++. .|+ ...|+.+..++-..|+..+|...|.+..... +..
T Consensus 278 Al~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~h 353 (966)
T KOG4626|consen 278 ALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNH 353 (966)
T ss_pred HHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-Ccc
Confidence 8875332 4567777888899999999999999999986 444 5789999999999999999999999999876 667
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH-HHHHHHH
Q 011362 344 IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN-VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNV-ITFDMLI 421 (487)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~ 421 (487)
..+.+.|...|...|.+++|..+|.....- .|. ....+.|...|-++|++++|+..+++.++ +.|+. ..|+.+.
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmG 429 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMG 429 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcc
Confidence 889999999999999999999999998874 444 46789999999999999999999999998 67774 6788999
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHhcccccccccccc
Q 011362 422 RGFIRINEPSKVIELLHKMKEINVMPD-ASIVSIVVDLLAKNEISLNSLPSFT 473 (487)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~~~~~~~ 473 (487)
..|-..|+.+.|.+.+.++.. +.|. ....+.+...+...|+..++|++|.
T Consensus 430 nt~ke~g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 430 NTYKEMGDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred hHHHHhhhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 999999999999999999988 4565 4678899999999999988887754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-22 Score=190.03 Aligned_cols=401 Identities=12% Similarity=-0.002 Sum_probs=294.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+......+.+.|++++|+..|++++.. .|+...|..+..+|...|++++|+..++...+.+ |.+...+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-------p~~~~a~~~ 199 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-------PDYSKALNR 199 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-------CCCHHHHHH
Confidence 4556788888999999999999998876 5677788888899999999999999999998876 567788889
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC--------------------
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG-------------------- 164 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------------------- 164 (487)
+..+|...|++++|+..|..+...+.. +......++..+... .+........+..
T Consensus 200 ~a~a~~~lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~~----~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 274 (615)
T TIGR00990 200 RANAYDGLGKYADALLDLTASCIIDGF-RNEQSAQAVERLLKK----FAESKAKEILETKPENLPSVTFVGNYLQSFRPK 274 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHHH----HHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCC
Confidence 999999999999998888766544211 111111111111110 1111111111110
Q ss_pred -----------CCCCh-hhHHHHHHH---HHhCCChHHHHHHHHHHHHCC-C-CCCHHHHHHHHHHHHcCCCHhHHHHHH
Q 011362 165 -----------VQPNV-VTFNVIMDE---LCKNGKMDEASRLLDLMIQHG-V-RPDAFTYNTLLDGFCLTGRVNHAKELF 227 (487)
Q Consensus 165 -----------~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (487)
..+.. ..+..+... ....+++++|.+.|+.....+ . +.....+..+...+...|++++|...+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~ 354 (615)
T TIGR00990 275 PRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADL 354 (615)
T ss_pred cchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 00000 011111111 122467899999999998764 2 234567888888899999999999999
Q ss_pred HHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 011362 228 VSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAA 307 (487)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 307 (487)
++..... +.....|..+..++...|++++|...++++....+ .+..++..+...+...|++++|...|++..+.. +.
T Consensus 355 ~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~ 431 (615)
T TIGR00990 355 SKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PD 431 (615)
T ss_pred HHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-cc
Confidence 9998774 44567888899999999999999999999988643 357788889999999999999999999998864 44
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCC-----cH-HH
Q 011362 308 DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVP-----NV-VT 381 (487)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~-~~ 381 (487)
+...+..+..++.+.|++++|+..++...... +.++..++.+...+...|++++|...|++........ +. ..
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l 510 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPL 510 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHH
Confidence 56777888889999999999999999998764 5678889999999999999999999999987642111 11 11
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
++..+..+...|++++|..++++...... .+...+..+...+...|++++|.+.|++..+..
T Consensus 511 ~~~a~~~~~~~~~~~eA~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 511 INKALALFQWKQDFIEAENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 22222334447999999999999987642 245678889999999999999999999998753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.2e-22 Score=189.02 Aligned_cols=393 Identities=16% Similarity=0.047 Sum_probs=291.3
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.++... |+...|..+..+|...|++++|++.++++++.. +.+..++..+..++...|++++|+..
T Consensus 140 ~~~~~~Ai~~y~~al~~~--p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~lg~~~eA~~~ 216 (615)
T TIGR00990 140 NKDFNKAIKLYSKAIECK--PDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGLGKYADALLD 216 (615)
T ss_pred cCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999999874 577889999999999999999999999999875 55677899999999999999999998
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC---------------------------CCCCC
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK---------------------------NIKPN 133 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------------------~~~~~ 133 (487)
|..+...+ +.+......++..+........+...++.-... ...+.
T Consensus 217 ~~~~~~~~-------~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (615)
T TIGR00990 217 LTASCIID-------GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEE 289 (615)
T ss_pred HHHHHHhC-------CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccc
Confidence 87776543 111111111111111100011111111100000 00000
Q ss_pred -HhhHHHHHHHH---HhcCChhhHHHHHHHHHHcC-CCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 011362 134 -VVTYTSVIRGF---CYAKDWNEAKRLFIEMMDQG-VQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTY 207 (487)
Q Consensus 134 -~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 207 (487)
...+..+...+ ...+++++|.+.|+...+.+ ..| ....+..+...+...|++++|+..++..++... .....|
T Consensus 290 ~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~~~ 368 (615)
T TIGR00990 290 TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQSY 368 (615)
T ss_pred cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHH
Confidence 00111111111 22468999999999998764 223 445677788888999999999999999988632 246688
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc
Q 011362 208 NTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI 287 (487)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (487)
..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...|++.+...+. +...+..+...+...
T Consensus 369 ~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 369 IKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHC
Confidence 888999999999999999999998875 567888999999999999999999999999987543 566777888899999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChH------hHHHHHHHHHhcCCHH
Q 011362 288 HQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIR------AYNSLIDGLCKSGRLE 361 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~ 361 (487)
|++++|...++...+.. +.+...+..+...+...|++++|...|+.........+.. .++..+..+...|+++
T Consensus 447 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~ 525 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFI 525 (615)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHH
Confidence 99999999999998763 4557888899999999999999999999998764321111 1222223344579999
Q ss_pred HHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
+|..++++..... +.+...+..++.++...|++++|...|++..+.
T Consensus 526 eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 526 EAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999987753 344567889999999999999999999999875
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-23 Score=188.25 Aligned_cols=312 Identities=15% Similarity=0.127 Sum_probs=225.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHcC
Q 011362 141 IRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD---AFTYNTLLDGFCLT 217 (487)
Q Consensus 141 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 217 (487)
...+...|++++|...|.++.+.++ .+..++..+...+...|++++|..+++.+...+..++ ..++..++..+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 3344556667777777777766532 2444566666666777777777777776665432211 23556667777777
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccCh----hhHHHHHHHHHhcCCHHHH
Q 011362 218 GRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV----VIHNTLFVGLFEIHQVERA 293 (487)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 293 (487)
|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+...+..+.. ..+..+...+...|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77777777777776653 445667777777777778888888777777765433221 1344566677788888888
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 294 FKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
...++++.+.. +.+...+..+...+.+.|++++|..+++++...+......+++.++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888887753 33456777788888999999999999999887643333466788889999999999999999998875
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCHH
Q 011362 374 VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIR---INEPSKVIELLHKMKEINVMPDAS 450 (487)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~ 450 (487)
.|+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+..++..++++|.+.++.|++.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 466666788889999999999999999998875 5888888888877664 558889999999999887778776
Q ss_pred HHHHHHHHHHhcccc
Q 011362 451 IVSIVVDLLAKNEIS 465 (487)
Q Consensus 451 ~~~~l~~~~~~~g~~ 465 (487)
..|.++|-.
T Consensus 355 ------~~c~~cg~~ 363 (389)
T PRK11788 355 ------YRCRNCGFT 363 (389)
T ss_pred ------EECCCCCCC
Confidence 336666665
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-20 Score=184.26 Aligned_cols=430 Identities=13% Similarity=0.025 Sum_probs=318.5
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
+..++. -.. .+.+.....-.+.+....|+.++|++++.++.... +.+...+..+...+...|++++|..+++++.+.
T Consensus 2 ~~~~~~-~~~-~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 2 LSWLRQ-ALK-SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred chhhhh-hhc-cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345555 222 24455556667788889999999999999988633 556667889999999999999999999999887
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC
Q 011362 88 NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP 167 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (487)
. |.+...+..++.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+.
T Consensus 79 ~-------P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~- 148 (765)
T PRK10049 79 E-------PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ- 148 (765)
T ss_pred C-------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-
Confidence 5 6677888899999999999999999999998873 44666 888899999999999999999999987443
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHc-----CCCH---hHHHHHHHHHHHc
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDA------FTYNTLLDGFCL-----TGRV---NHAKELFVSMESM 233 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~ 233 (487)
+...+..+..++...+..+.|+..++.+.. .|+. .....++..... .+++ ++|+..++.+.+.
T Consensus 149 ~~~~~~~la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~ 225 (765)
T PRK10049 149 TQQYPTEYVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEAL 225 (765)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhh
Confidence 555666677788888999999998886654 2221 111222222221 2234 6788888888754
Q ss_pred -CCCCCHh-hHH----HHHHHHHccCCHhHHHHHHHHHHHCCCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011362 234 -GCKHTVF-SYS----ILINGYCKNKEIEGALSLYSEMLSKGIK-PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA 306 (487)
Q Consensus 234 -~~~~~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (487)
...|+.. .+. ..+..+...|++++|+..|+.+...+.. |+. ....+...+...|++++|...|+++.+....
T Consensus 226 ~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~ 304 (765)
T PRK10049 226 WHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPET 304 (765)
T ss_pred cccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCC
Confidence 1122211 111 1133456779999999999999887532 322 2233577899999999999999998765321
Q ss_pred C---cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-----------CCC---hHhHHHHHHHHHhcCCHHHHHHHHHh
Q 011362 307 A---DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC-----------EFD---IRAYNSLIDGLCKSGRLEIALELFRS 369 (487)
Q Consensus 307 ~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (487)
. .......+..++...|++++|..+++.+..... .|+ ...+..+...+...|++++|...+++
T Consensus 305 ~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~ 384 (765)
T PRK10049 305 IADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARE 384 (765)
T ss_pred CCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 124456667778999999999999999886531 122 23455677788899999999999999
Q ss_pred ccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 011362 370 LPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN-VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPD 448 (487)
Q Consensus 370 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (487)
+.... +.+...+..++..+...|++++|+..++++.... |+ ...+...+..+...|++++|..+++++++. .|+
T Consensus 385 al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd 459 (765)
T PRK10049 385 LAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQ 459 (765)
T ss_pred HHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCC
Confidence 98763 5667888999999999999999999999999853 54 566667777888999999999999999984 577
Q ss_pred HHHHHHHHHHH
Q 011362 449 ASIVSIVVDLL 459 (487)
Q Consensus 449 ~~~~~~l~~~~ 459 (487)
......+-..+
T Consensus 460 ~~~~~~~~~~~ 470 (765)
T PRK10049 460 DPGVQRLARAR 470 (765)
T ss_pred CHHHHHHHHHH
Confidence 66666555544
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-20 Score=183.31 Aligned_cols=446 Identities=12% Similarity=0.020 Sum_probs=257.3
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|+..|+.+++..+ .+..++..|...|...|++++|+..+++..+.. |+...+..++..+ +++++|..++
T Consensus 58 Gd~~~A~~~l~~Al~~dP-~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~y 131 (987)
T PRK09782 58 NDEATAIREFEYIHQQVP-DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTTV 131 (987)
T ss_pred CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHHH
Confidence 899999999999999974 468899999999999999999999999999874 4444444333222 8999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH-HHHHHhcCChhh
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDG--------LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV-IRGFCYAKDWNE 152 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~ 152 (487)
+++.... |.+...+..+... |.+. ++|.+.++ .......|+..+.... .+.|.+.++|++
T Consensus 132 e~l~~~~-------P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~ 200 (987)
T PRK09782 132 EELLAQQ-------KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQ 200 (987)
T ss_pred HHHHHhC-------CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHH
Confidence 9999876 4555666555554 4444 34444443 2222223334444444 677777777777
Q ss_pred HHHHHHHHHHcCCC------------------------------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-
Q 011362 153 AKRLFIEMMDQGVQ------------------------------PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR- 201 (487)
Q Consensus 153 a~~~~~~~~~~~~~------------------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 201 (487)
|++++.++.+.++. -+...+..++..|.+.|+.++|.++++.+......
T Consensus 201 Ai~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 201 ADTLYNEARQQNTLSAAERRQWFDVLLAGQLDDRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHhhCHHHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 77777777665422 12333334445555556666666665554432110
Q ss_pred CCHHHHH------------------------------HHHHHHHcC----------------------------------
Q 011362 202 PDAFTYN------------------------------TLLDGFCLT---------------------------------- 217 (487)
Q Consensus 202 ~~~~~~~------------------------------~l~~~~~~~---------------------------------- 217 (487)
|...++. .++..+.+.
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 360 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAE 360 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhH
Confidence 1111100 001111111
Q ss_pred -----------------------------CCHhHHHHHHHHHHHc-C-CCCCHhhHHHHHHHHHcc--------------
Q 011362 218 -----------------------------GRVNHAKELFVSMESM-G-CKHTVFSYSILINGYCKN-------------- 252 (487)
Q Consensus 218 -----------------------------~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~-------------- 252 (487)
|+.++|.++++..... + ...+......++..|.+.
T Consensus 361 ~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 361 ALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 2222222222222110 0 000000111122222221
Q ss_pred -------------------------------------------------CCHhHHHHHHHHHHHCCCccChhhHHHHHHH
Q 011362 253 -------------------------------------------------KEIEGALSLYSEMLSKGIKPDVVIHNTLFVG 283 (487)
Q Consensus 253 -------------------------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (487)
+++++|+..+.+..... |+......+...
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~a 518 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRDTLPGVALYAWLQAEQRQ--PDAWQHRAVAYQ 518 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHhCCcHHHHHHHHHHHHhC--CchHHHHHHHHH
Confidence 23333333333333221 222222222233
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 011362 284 LFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIA 363 (487)
Q Consensus 284 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 363 (487)
+...|++++|...++++... +|+...+..+...+.+.|++++|...++...... +.+...+..+.......|++++|
T Consensus 519 l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eA 595 (987)
T PRK09782 519 AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELA 595 (987)
T ss_pred HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHH
Confidence 34566666666666665443 2333344455556666777777777777776554 33333333333444455778888
Q ss_pred HHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 364 LELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
...+++..+. .|+...+..+..++.+.|++++|+..+++...... .+...+..+..++...|++++|...+++..+.
T Consensus 596 l~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 596 LNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8887777764 45677777777888888888888888888877532 24566677777788888888888888888775
Q ss_pred CCCCCHHHHHHHHHHHHhcccccccccccc
Q 011362 444 NVMPDASIVSIVVDLLAKNEISLNSLPSFT 473 (487)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 473 (487)
. +-+...+..+..++...|+..+++..+.
T Consensus 673 ~-P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 673 L-PDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred C-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4 4456677777888888888765555443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-21 Score=183.50 Aligned_cols=323 Identities=15% Similarity=0.084 Sum_probs=262.5
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+.+++..+... |.+...+..++.++...|++++|+..++++.... +.+...+..+...+...|++++|+..
T Consensus 55 ~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~ 132 (656)
T PRK15174 55 KDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADL 132 (656)
T ss_pred cCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 488999999999999886 4467777778888889999999999999999875 55677888889999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++++.+.. |.+...+..++.++...|++++|...++.+..... .+...+..+ ..+...|++++|...++.+
T Consensus 133 l~~Al~l~-------P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 133 AEQAWLAF-------SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARAL 203 (656)
T ss_pred HHHHHHhC-------CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHH
Confidence 99999875 56788889999999999999999999998876532 234444333 3477889999999999998
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH----HHHHHHHHHHcCCC
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH----AKELFVSMESMGCK 236 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~ 236 (487)
.+....++......+...+...|++++|+..++.+.... +.+...+..+...+...|++++ |...++++.... |
T Consensus 204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P 281 (656)
T PRK15174 204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-S 281 (656)
T ss_pred HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-C
Confidence 776443444455556678889999999999999998764 3367788888999999999885 789999988775 5
Q ss_pred CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH-HhHHHH
Q 011362 237 HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT-WTYRTF 315 (487)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 315 (487)
.+...+..+...+...|++++|...+++.....+. +...+..+...+...|++++|...++.+.... |+. ..+..+
T Consensus 282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~ 358 (656)
T PRK15174 282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYA 358 (656)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHH
Confidence 67788889999999999999999999999886433 55667778888999999999999999988763 333 334445
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 316 IDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 316 ~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
..++...|+.++|...|+.+.+..
T Consensus 359 a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 359 AAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC
Confidence 677889999999999999988664
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-22 Score=184.86 Aligned_cols=307 Identities=17% Similarity=0.116 Sum_probs=251.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
....+...|++++|+..|+++.+.+ +.+..++..++..+...|++++|..+++.+...+... .......+..++..
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~---~~~~~~~~~~La~~ 116 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT---REQRLLALQELGQD 116 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHHH
Confidence 4556778899999999999999875 4566788999999999999999999999998854100 01123568889999
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhCCC
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKNGK 184 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~ 184 (487)
|...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|+
T Consensus 117 ~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 117 YLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999998763 456788999999999999999999999999886543322 234567778899999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHH
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSE 264 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (487)
+++|..+++++.+.. +.+...+..+...+.+.|++++|.+.++++...+......++..++.+|...|++++|...+++
T Consensus 196 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~ 274 (389)
T PRK11788 196 LDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999998764 3356678888999999999999999999998764222345678899999999999999999999
Q ss_pred HHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh---CCCHhHHHHHHHHHHHcCCC
Q 011362 265 MLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK---NGYIVEAVELFHTLRILKCE 341 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 341 (487)
+.... |+...+..++..+.+.|++++|..+++++.+. .|+...+..++..+.. .|+..++..+++.+.+.++.
T Consensus 275 ~~~~~--p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 350 (389)
T PRK11788 275 ALEEY--PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLK 350 (389)
T ss_pred HHHhC--CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHh
Confidence 98864 45566688899999999999999999998885 5788788877777664 55899999999999876666
Q ss_pred CChH
Q 011362 342 FDIR 345 (487)
Q Consensus 342 ~~~~ 345 (487)
|++.
T Consensus 351 ~~p~ 354 (389)
T PRK11788 351 RKPR 354 (389)
T ss_pred CCCC
Confidence 6655
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-21 Score=185.52 Aligned_cols=405 Identities=12% Similarity=-0.002 Sum_probs=308.6
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|+.++|++++..+.... +.+...+..+...+...|++++|.++|+++++.. +.+...+..++.++...|++++|+..
T Consensus 28 ~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~ 105 (765)
T PRK10049 28 AGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVK 105 (765)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 489999999999998743 4567779999999999999999999999998874 55677788888999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++++.+.. |.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+..++...+..++|+..++.+
T Consensus 106 l~~~l~~~-------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 106 AKQLVSGA-------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHHHHhC-------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 99999876 56677 8899999999999999999999999874 336667777888888899999999998866
Q ss_pred HHcCCCCCh------hhHHHHHHHHHh-----CCCh---HHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHcCCCH
Q 011362 161 MDQGVQPNV------VTFNVIMDELCK-----NGKM---DEASRLLDLMIQH-GVRPDAF-TY----NTLLDGFCLTGRV 220 (487)
Q Consensus 161 ~~~~~~~~~------~~~~~l~~~~~~-----~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~ 220 (487)
.. .|+. .....+++.... .+++ ++|+..++.+.+. ...|+.. .+ ...+..+...|++
T Consensus 177 ~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~ 253 (765)
T PRK10049 177 NL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRY 253 (765)
T ss_pred CC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhH
Confidence 54 2221 112222332221 2234 6788888888854 2222221 11 1113345677999
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc---ChhhHHHHHHHHHhcCCHHHHHHHH
Q 011362 221 NHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIHNTLFVGLFEIHQVERAFKLF 297 (487)
Q Consensus 221 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~ 297 (487)
++|+..|+.+.+.+.+........+...|...|++++|+..|+++....... .......+..++...+++++|...+
T Consensus 254 ~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l 333 (765)
T PRK10049 254 KDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVT 333 (765)
T ss_pred HHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999887522112223335778999999999999999988753221 1234566677889999999999999
Q ss_pred HHHHHcCC-----------CCc---HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHH
Q 011362 298 DEMQRNGV-----------AAD---TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIA 363 (487)
Q Consensus 298 ~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 363 (487)
+.+.+... .|+ ...+..+...+...|++++|+..++++.... |.+...+..++..+...|++++|
T Consensus 334 ~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A 412 (765)
T PRK10049 334 AHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAA 412 (765)
T ss_pred HHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 99987531 122 2345567778899999999999999998775 66788999999999999999999
Q ss_pred HHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011362 364 LELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRG 423 (487)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (487)
++.++++.... +.+...+...+..+...|++++|+.+++++++. .|+......+-+.
T Consensus 413 ~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~ 469 (765)
T PRK10049 413 ENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARA 469 (765)
T ss_pred HHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 99999999863 444677778888899999999999999999985 4555544444333
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-21 Score=181.91 Aligned_cols=334 Identities=13% Similarity=0.031 Sum_probs=271.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
-...++..+.+.|++++|..+++..+... +.+...+..++.+....|+++.|+..++++.... |.+...+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-------P~~~~a~~~ 115 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-------VCQPEDVLL 115 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-------CCChHHHHH
Confidence 34556777889999999999999988875 4455667777788888999999999999999876 667888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
+...+...|++++|...++++.... +.+...+..++..+...|++++|...++.+....+. +...+..+ ..+...|+
T Consensus 116 la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~ 192 (656)
T PRK15174 116 VASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSR 192 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCC
Confidence 9999999999999999999998863 346778888999999999999999999988766433 23333333 34788999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH----HHH
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG----ALS 260 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~ 260 (487)
+++|...++.+.+....++......+...+...|++++|...++.+.... +.+...+..+...+...|++++ |..
T Consensus 193 ~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~ 271 (656)
T PRK15174 193 LPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAE 271 (656)
T ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHH
Confidence 99999999998776443445555666778889999999999999998775 5677888889999999999985 799
Q ss_pred HHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 011362 261 LYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (487)
.+++.....+. +...+..+...+...|++++|...++++.+.. +.+......+..++.+.|++++|...++.+....
T Consensus 272 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~- 348 (656)
T PRK15174 272 HWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK- 348 (656)
T ss_pred HHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-
Confidence 99999886443 66788889999999999999999999998864 3455677788889999999999999999998764
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
+.+...+..+..++...|++++|...|+++.+.
T Consensus 349 P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 349 GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 333344445667788999999999999988764
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-20 Score=170.54 Aligned_cols=428 Identities=12% Similarity=0.068 Sum_probs=224.3
Q ss_pred CccchHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTP--DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV--FTYTTLVNGLCRTSHTIVA 77 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a 77 (487)
|+++.+..+...+......- -+..|..+.++|...|++++|...|.+..+.. ++. -.+.-+++.+.+.|+++.+
T Consensus 284 ~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s 361 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEES 361 (1018)
T ss_pred ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHH
Confidence 34444444444444432110 12234445555555555555555554444432 222 2233444555555555555
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011362 78 LNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG----FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEA 153 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 153 (487)
...|+++.+.. |.+..+...|...|...+ ..+.|..++.+..+.- +.|...|..+...+.....+..
T Consensus 362 ~~~fEkv~k~~-------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s- 432 (1018)
T KOG2002|consen 362 KFCFEKVLKQL-------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS- 432 (1018)
T ss_pred HHHHHHHHHhC-------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-
Confidence 55555555543 344444455554444443 2344444444444432 2344555555555443333332
Q ss_pred HHHHHHHH----HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---CCC------CCHHHHHHHHHHHHcCCCH
Q 011362 154 KRLFIEMM----DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH---GVR------PDAFTYNTLLDGFCLTGRV 220 (487)
Q Consensus 154 ~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~------~~~~~~~~l~~~~~~~~~~ 220 (487)
+..|..+. ..+-.+.+...|.+...+...|+++.|...|...... ... ++..+-..+....-..+++
T Consensus 433 L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~ 512 (1018)
T KOG2002|consen 433 LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDT 512 (1018)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhh
Confidence 44443332 2233345555566666666666666666666555443 011 1122233344444555566
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011362 221 NHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM 300 (487)
Q Consensus 221 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (487)
+.|.+.|+.+.+.. |.-...|..++.+....+...+|...+......+- .++..+..+...+.....+..|.+-|..+
T Consensus 513 ~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i 590 (1018)
T KOG2002|consen 513 EVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETI 590 (1018)
T ss_pred hHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHH
Confidence 66666666665542 22233333333233334555666666666555322 24444454555666666666666655555
Q ss_pred HHcCC-CCcHHhHHHHHHHHHh------------CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 011362 301 QRNGV-AADTWTYRTFIDGLCK------------NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELF 367 (487)
Q Consensus 301 ~~~~~-~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (487)
.+.-. .+|+.+...|...|.+ .+..++|+++|.+++... |.+..+-|.+.-+++..|++.+|..+|
T Consensus 591 ~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIF 669 (1018)
T KOG2002|consen 591 LKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIF 669 (1018)
T ss_pred HhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHH
Confidence 44321 2355555555554432 234566777777777655 566667777777777777777777777
Q ss_pred HhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 368 RSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN-AVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
.+..+.. .....+|-.+..+|..+|++..|+++|+...+. ...-+......|.+++.+.|.+.+|.+.+.......
T Consensus 670 sqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 670 SQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 7776653 234456777777777777777777777776543 223356666777777777777777777777766643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.5e-19 Score=167.95 Aligned_cols=435 Identities=12% Similarity=0.032 Sum_probs=299.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|+++.|+..|+.+++..+.....++ .++..+...|+.++|+..+++.... .+........+...+...|++++|+++
T Consensus 47 ~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd~Aiel 124 (822)
T PRK14574 47 AGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWDQALAL 124 (822)
T ss_pred CCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 37888999999999887533112344 7788888889999999999988721 122333344446688888999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
|+++.+.. |.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++
T Consensus 125 y~kaL~~d-------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 125 WQSSLKKD-------PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHhhC-------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99998876 566777778888888899999999999888776 445555544444444456666699999998
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH------HHHHHHHH---H--cCCC---HhHHHHH
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFT------YNTLLDGF---C--LTGR---VNHAKEL 226 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~--~~~~---~~~a~~~ 226 (487)
.+..+. +...+..+..++.+.|-...|+++...-... +.+...- ...+++.- . ...+ .+.|+.-
T Consensus 196 l~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~ 273 (822)
T PRK14574 196 VRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD 273 (822)
T ss_pred HHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence 887432 5666777888888888888888766543211 1111100 01111100 0 1122 2344444
Q ss_pred HHHHHHc-C-CCCCHh----hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011362 227 FVSMESM-G-CKHTVF----SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM 300 (487)
Q Consensus 227 ~~~~~~~-~-~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (487)
++.+... + .|+... ...-.+-++...+++.++++.|+.+...+.+....+...+..+|...+++++|..++..+
T Consensus 274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 4444431 1 122211 223445667788999999999999988775544557778889999999999999999988
Q ss_pred HHcCC-----CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-----------CCC---hHhHHHHHHHHHhcCCHH
Q 011362 301 QRNGV-----AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC-----------EFD---IRAYNSLIDGLCKSGRLE 361 (487)
Q Consensus 301 ~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~ 361 (487)
..... +++......|.-++...+++++|..+++.+.+..+ .|+ ......++..+...|++.
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 66431 22333356788888999999999999999886321 111 122344567778899999
Q ss_pred HHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP-NVITFDMLIRGFIRINEPSKVIELLHKM 440 (487)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (487)
+|.+.++++.... |-|......+...+...|.+.+|+..++.+... .| +..+....+.++...|++.+|..+.+.+
T Consensus 434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l 510 (822)
T PRK14574 434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDV 510 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 9999999987663 667888888899999999999999999777664 34 4556667778888889999999999888
Q ss_pred HhcCCCCCHHHHH
Q 011362 441 KEINVMPDASIVS 453 (487)
Q Consensus 441 ~~~~~~~~~~~~~ 453 (487)
.+. .|+.....
T Consensus 511 ~~~--~Pe~~~~~ 521 (822)
T PRK14574 511 ISR--SPEDIPSQ 521 (822)
T ss_pred Hhh--CCCchhHH
Confidence 774 35444333
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.6e-20 Score=168.32 Aligned_cols=451 Identities=12% Similarity=0.040 Sum_probs=269.6
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011362 6 HGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE--PDVFTYTTLVNGLCRTSHTIVALNLFEE 83 (487)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 83 (487)
.+++++.++-..+ +.++.+.+.|...+.-.|+++.+..+...+...... .-...|..+.++|-..|++++|...|.+
T Consensus 254 ~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~ 332 (1018)
T KOG2002|consen 254 KGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYME 332 (1018)
T ss_pred HHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 3444444444443 234555555555555555555555555555443211 1122355555556666666666666555
Q ss_pred HHhCCCCCccccccc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC----ChhhHHHHHH
Q 011362 84 MANGNGEFGVVCEPN-TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK----DWNEAKRLFI 158 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~ 158 (487)
..+.. +.+ ...+..+++.+...|+++.+...|+.+.+. .+.+..+...|...|...+ ..+.|..++.
T Consensus 333 s~k~~-------~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~ 404 (1018)
T KOG2002|consen 333 SLKAD-------NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKASNVLG 404 (1018)
T ss_pred HHccC-------CCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHH
Confidence 55543 111 334445555566666666666666555554 2334445555555554443 2344444444
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc-
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM----IQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM- 233 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~- 233 (487)
+..+.. +.|...|..+...+.... ...++.+|..+ ...+..+.+...|.+...+...|++.+|...|......
T Consensus 405 K~~~~~-~~d~~a~l~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~ 482 (1018)
T KOG2002|consen 405 KVLEQT-PVDSEAWLELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKL 482 (1018)
T ss_pred HHHhcc-cccHHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhh
Confidence 444432 224445554444443332 22224444332 23344455666666666667777777777776665543
Q ss_pred --CCC------CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 011362 234 --GCK------HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGV 305 (487)
Q Consensus 234 --~~~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 305 (487)
... ++..+-..+..++-..++.+.|.+.|..+....+. -+..|..++...-..++..+|...++.+...+
T Consensus 483 ~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d- 560 (1018)
T KOG2002|consen 483 LEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID- 560 (1018)
T ss_pred hhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-
Confidence 111 11122334455555666677777777776664211 22233344333334466677777777776643
Q ss_pred CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCChHhHHHHHHHHHh------------cCCHHHHHHHHHhccC
Q 011362 306 AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC-EFDIRAYNSLIDGLCK------------SGRLEIALELFRSLPC 372 (487)
Q Consensus 306 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~~~~ 372 (487)
..++..+..+...+.+...+.-|..-|..+.+... .+|+.+...|...|.. .+..++|+++|.++++
T Consensus 561 ~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~ 640 (1018)
T KOG2002|consen 561 SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR 640 (1018)
T ss_pred cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh
Confidence 44555666666677777777777776666553321 3566776677765543 2457889999999887
Q ss_pred CCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-cCCCCCHHH
Q 011362 373 GVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE-INVMPDASI 451 (487)
Q Consensus 373 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~ 451 (487)
.. +.|...-|.+..+++..|++.+|..+|.+..+... ....+|..+.++|...|++-.|+++|+.... ....-+..+
T Consensus 641 ~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~v 718 (1018)
T KOG2002|consen 641 ND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEV 718 (1018)
T ss_pred cC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 64 66788889999999999999999999999988643 2567788999999999999999999999875 444556788
Q ss_pred HHHHHHHHHhcccccccccc
Q 011362 452 VSIVVDLLAKNEISLNSLPS 471 (487)
Q Consensus 452 ~~~l~~~~~~~g~~~~~~~~ 471 (487)
...|..++.+.|++.++.+.
T Consensus 719 l~~Lara~y~~~~~~eak~~ 738 (1018)
T KOG2002|consen 719 LHYLARAWYEAGKLQEAKEA 738 (1018)
T ss_pred HHHHHHHHHHhhhHHHHHHH
Confidence 89999999999999555443
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-18 Score=169.53 Aligned_cols=258 Identities=9% Similarity=-0.025 Sum_probs=199.4
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV 282 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 282 (487)
+...+..+..++.. ++.++|...+...... .|+......+...+...|++++|...++++... +|+...+..+..
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~ 550 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN 550 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence 45556666666655 6777888877777665 345444444455567899999999999998664 344455667778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 011362 283 GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362 (487)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (487)
.+...|+.++|...+....+.. +.....+..+.......|++++|...+++..... |+...+..+..++.+.|++++
T Consensus 551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence 8899999999999999998864 3333444444455556799999999999999774 468889999999999999999
Q ss_pred HHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
|...+++..... +.+...++.+..++...|++++|+..+++..+... -+...+..+..++...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 999999999874 55677888999999999999999999999998643 3677888999999999999999999999998
Q ss_pred cCCCCCH-HHHHHHHHHHHhccccccccccc
Q 011362 443 INVMPDA-SIVSIVVDLLAKNEISLNSLPSF 472 (487)
Q Consensus 443 ~~~~~~~-~~~~~l~~~~~~~g~~~~~~~~~ 472 (487)
.. |+. .+.....+...+..++..+.+.+
T Consensus 706 l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 706 DI--DNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred cC--CCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 54 543 56666666666666665554443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-18 Score=161.11 Aligned_cols=439 Identities=12% Similarity=0.057 Sum_probs=318.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV--FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+.+-..-+....+.|+++.|+..|+++++.. |+. ..+ .++..+...|+.++|+..+++..... +....
T Consensus 34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-------n~~~~ 103 (822)
T PRK14574 34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-------NISSR 103 (822)
T ss_pred hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-------CCCHH
Confidence 3333334555679999999999999999874 443 334 88888889999999999999998422 34455
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (487)
....++..+...|++++|+++|+++.+.. +-++..+..++..+...++.++|++.++++... .|+...+..++..+.
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~ 180 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNR 180 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHH
Confidence 55555778999999999999999999874 336777888889999999999999999999876 445555544444454
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh------HHHHHHHH---H-
Q 011362 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS------YSILINGY---C- 250 (487)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------~~~l~~~~---~- 250 (487)
..++..+|++.++++.+.. +.+...+..+..+..+.|-...|.++...-...- .+.... ...+++.- .
T Consensus 181 ~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~ 258 (822)
T PRK14574 181 ATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTR 258 (822)
T ss_pred hcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccc
Confidence 5667767999999999874 3367788888999999999999988776533221 111100 11111110 0
Q ss_pred -ccC---CHhHHHHHHHHHHHC-CCccCh-----hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 011362 251 -KNK---EIEGALSLYSEMLSK-GIKPDV-----VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC 320 (487)
Q Consensus 251 -~~~---~~~~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (487)
... -.+.|+.-++.+... +..|.. ....-.+.++...++..++++.++.+...+.+....+...+..+|.
T Consensus 259 ~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl 338 (822)
T PRK14574 259 SETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYI 338 (822)
T ss_pred cchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHH
Confidence 111 234555666665542 111221 1222345677889999999999999998886656678889999999
Q ss_pred hCCCHhHHHHHHHHHHHcCC-----CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCC-----------CCc--H-HH
Q 011362 321 KNGYIVEAVELFHTLRILKC-----EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVL-----------VPN--V-VT 381 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~--~-~~ 381 (487)
..+++++|..++..+..... +++......|..+|...+++++|..+++.+.+... .|| - ..
T Consensus 339 ~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~ 418 (822)
T PRK14574 339 DRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEG 418 (822)
T ss_pred hcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHH
Confidence 99999999999999975431 23444457889999999999999999999876311 122 2 23
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAK 461 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (487)
+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|.+.++.+.... +-+..+....+.++-.
T Consensus 419 ~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~ 496 (822)
T PRK14574 419 QTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMA 496 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHh
Confidence 3445677888999999999999998864 3488889999999999999999999998877653 4445666777888888
Q ss_pred ccccccc-------ccccccchhh
Q 011362 462 NEISLNS-------LPSFTVHEQQ 478 (487)
Q Consensus 462 ~g~~~~~-------~~~~~~~~~~ 478 (487)
.|++.++ ++.+|..++-
T Consensus 497 l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 497 LQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred hhhHHHHHHHHHHHHhhCCCchhH
Confidence 8988544 4455555533
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.8e-18 Score=146.04 Aligned_cols=209 Identities=14% Similarity=0.110 Sum_probs=169.7
Q ss_pred HccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHH
Q 011362 250 CKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAV 329 (487)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 329 (487)
...|++++|...|++.+..+..- ...+..+.-.+...|+.++|+++|-++..- ...+...+..+...|....+...|+
T Consensus 501 f~ngd~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 501 FANGDLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eecCcHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 45689999999999998763332 222223344567889999999999877543 2346677888888999999999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011362 330 ELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
+++...... +|.|+.++..|...|-+.|+-.+|.+.+-.--+. ++-+..+...|...|....-+++++.+|++..-
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-- 654 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-- 654 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--
Confidence 999888765 4889999999999999999999999887665544 567889999999999999899999999999865
Q ss_pred CCCCHHHHHHHHHHH-HhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 410 VVPNVITFDMLIRGF-IRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 410 ~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.|+..-|..++..| .+.|++++|.++|+..... ++.|......++..+...|..
T Consensus 655 iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 655 IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence 689999998777655 5789999999999998764 688889999999888887765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9e-16 Score=128.87 Aligned_cols=431 Identities=16% Similarity=0.208 Sum_probs=305.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--ccCChHH-HHHHHHHHHhCCCCCccc-----
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC--RTSHTIV-ALNLFEEMANGNGEFGVV----- 94 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~-a~~~~~~~~~~~~~~~~~----- 94 (487)
+++=+.|+. ...+|.++++.-+|+.|...|++.+...-..|++.-+ ...+..- -.+.|-.|.+.+.+.+.+
T Consensus 116 V~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 455566665 4678999999999999999998888877666655432 2222211 123333333333221111
Q ss_pred --------cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 011362 95 --------CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ 166 (487)
Q Consensus 95 --------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 166 (487)
.|.+..++..+|..+++.-..+.|.+++++......+.+..+||.+|.+-.-. .-.++..+|......
T Consensus 195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 46678899999999999999999999999998887788999999998865433 237899999999999
Q ss_pred CChhhHHHHHHHHHhCCChHH----HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH-HHHHHHHHHHc----CC--
Q 011362 167 PNVVTFNVIMDELCKNGKMDE----ASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH-AKELFVSMESM----GC-- 235 (487)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~----~~-- 235 (487)
||..|+|.++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++... .+
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 999999999999999998765 56788999999999999999999999999888754 44555555432 12
Q ss_pred --CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC----CccCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011362 236 --KHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG----IKPDV---VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA 306 (487)
Q Consensus 236 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (487)
+.+...|..-+..|.+..+.+-|.++..-+.... +.|+. .-|..+....+.....+.....|+.+.-+-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 2344556677777888889888888766554321 22332 24566777788889999999999999888788
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CH---H----------HHHHHH-----
Q 011362 307 ADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG-RL---E----------IALELF----- 367 (487)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~---~----------~a~~~~----- 367 (487)
|+..+...++++....++++-.-+++..+...|...+......++..+++.. ++ + -|..++
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999889998888888888877664444444444444444332 11 0 011111
Q ss_pred --HhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 368 --RSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV----VPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 368 --~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
.++.+. .-.....+..+..+.+.|+.++|.+++.-+.+.+- .|.......++..-.+.+++..|..+++-|.
T Consensus 511 ~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~ 588 (625)
T KOG4422|consen 511 QPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLAS 588 (625)
T ss_pred hHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 122222 33455667777788999999999999999865532 2333444466777788899999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHH
Q 011362 442 EINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~ 460 (487)
..+.+.-......+.+.|.
T Consensus 589 ~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 589 AFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred HcCchhhhHHHHHHHHhcC
Confidence 7764443334444444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-15 Score=134.45 Aligned_cols=436 Identities=12% Similarity=0.034 Sum_probs=241.9
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH--
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE-- 82 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-- 82 (487)
+.|+.++.++.+.- |.+...|.+ |.+..-++.|..+++++.+. ++.+..+|..-...--.+|+.+...+++.
T Consensus 393 ~darilL~rAvecc-p~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rg 466 (913)
T KOG0495|consen 393 EDARILLERAVECC-PQSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRG 466 (913)
T ss_pred HHHHHHHHHHHHhc-cchHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 34556666666553 334443333 33344555566666555543 34455555544444445555555444443
Q ss_pred -------------------------------------HHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 83 -------------------------------------EMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQM 125 (487)
Q Consensus 83 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 125 (487)
.....+.+ -.....+|..-...|.+.+.++-|..+|...
T Consensus 467 l~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvE----eed~~~tw~~da~~~~k~~~~~carAVya~a 542 (913)
T KOG0495|consen 467 LSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVE----EEDRKSTWLDDAQSCEKRPAIECARAVYAHA 542 (913)
T ss_pred HHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccc----cchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence 33332211 1112234445555555555566666666555
Q ss_pred HhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 011362 126 KDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAF 205 (487)
Q Consensus 126 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 205 (487)
++. .+-+...|......--..|..++...+|+++...- +-....|......+...|+...|..++..+.+.... +..
T Consensus 543 lqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see 619 (913)
T KOG0495|consen 543 LQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE 619 (913)
T ss_pred Hhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence 554 23344455555554445556666666666665542 223444445555556666666666666666655322 555
Q ss_pred HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHH
Q 011362 206 TYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLF 285 (487)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (487)
.|..-+..-.....++.|..+|.+.... .++...|..-+..---.++.++|.+++++.++. ++.-...|..+.+.+-
T Consensus 620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e 696 (913)
T KOG0495|consen 620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE 696 (913)
T ss_pred HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence 6666666666666667777666666554 345555555555555566666777666666654 2222335555566666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 011362 286 EIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALE 365 (487)
Q Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 365 (487)
+.++.+.|...|..-.+. ++.....+..+...-.+.|.+-+|..++++....+ |.+...|...+.+-.+.|+.+.|..
T Consensus 697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 666666666666555543 23334455555555566666777777777666554 5566666666777677777777766
Q ss_pred HHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 011362 366 LFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINV 445 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (487)
++.++++. ++.+...|..-|...-+.++-......+++. ..|+.....+...+....++++|.+.|++.+..+
T Consensus 775 lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d- 847 (913)
T KOG0495|consen 775 LMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD- 847 (913)
T ss_pred HHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-
Confidence 66665544 2333444544444444444433333333222 2355566667777777778888888888887754
Q ss_pred CCCHHHHHHHHHHHHhcccc
Q 011362 446 MPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 446 ~~~~~~~~~l~~~~~~~g~~ 465 (487)
+....+|..+.......|.-
T Consensus 848 ~d~GD~wa~fykfel~hG~e 867 (913)
T KOG0495|consen 848 PDNGDAWAWFYKFELRHGTE 867 (913)
T ss_pred CccchHHHHHHHHHHHhCCH
Confidence 33346676666666667744
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-15 Score=128.11 Aligned_cols=397 Identities=15% Similarity=0.202 Sum_probs=287.3
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHH--HHhcCCHHHH-HHHHHHHHhcC-------------------CCCCHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKG--LCAESRIMEA-AALFTKLRVFG-------------------CEPDVF 59 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A-~~~~~~~~~~~-------------------~~~~~~ 59 (487)
|.+.++.-+|++|.+.|.+.+...-..|++. |....++.=| .+.|-.|...| .+.+..
T Consensus 129 ~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT~e 208 (625)
T KOG4422|consen 129 REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKTDE 208 (625)
T ss_pred cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCCch
Confidence 6778899999999999988877766665543 3233333211 22333332221 244667
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
++..+|.++++-...+.|.+++++..... ...+..+||.+|.+-.-. .-.+++.+|....+.||..|||.
T Consensus 209 t~s~mI~Gl~K~~~~ERA~~L~kE~~~~k------~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 209 TVSIMIAGLCKFSSLERARELYKEHRAAK------GKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHhh------heeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHH
Confidence 89999999999999999999999998877 578899999998765432 23788999999999999999999
Q ss_pred HHHHHHhcCChhh----HHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHH-HHHHHHHHHH----CCC---CC-CHHH
Q 011362 140 VIRGFCYAKDWNE----AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASRLLDLMIQ----HGV---RP-DAFT 206 (487)
Q Consensus 140 l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~---~~-~~~~ 206 (487)
++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+.+.++..+ +..++.++.. ... .| |...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998865 46788899999999999999999999998888744 4445554443 222 22 4556
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcC----CCCC---HhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHH
Q 011362 207 YNTLLDGFCLTGRVNHAKELFVSMESMG----CKHT---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNT 279 (487)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 279 (487)
|...+..|.+..+.+-|..+..-+.... ++++ ..-|..+....|+....+.-...|+.|..+-.-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 7777888889999998888776665421 2232 23356677788889999999999999998878889999999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCC-CH--------hH-----HHHHH-------HHHHHc
Q 011362 280 LFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNG-YI--------VE-----AVELF-------HTLRIL 338 (487)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~--------~~-----a~~~~-------~~~~~~ 338 (487)
++++....+.++-..+++..+...|..........++..+++.. ++ .. |..++ .++.+.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 99999999999999999988887765555444444444444433 11 11 11111 112222
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCC---cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 011362 339 KCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV-LVP---NVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV 410 (487)
Q Consensus 339 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 410 (487)
.......+.++-.+.+.|+.++|.+++..+...+ --| .......++......+++..|..+++-|...+.
T Consensus 519 --~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 519 --DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred --cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 3456677888888999999999999999885433 223 333344566667788899999999999977643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-15 Score=126.66 Aligned_cols=434 Identities=11% Similarity=0.061 Sum_probs=325.8
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV-FTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+++.+|+.+|++++..+ ..+...|...+.+=.+...+..|..+++++... -|-+ ..|...+.+--..|+...|.++
T Consensus 87 ~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 87 KEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred HHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 46788999999999987 458888999999999999999999999999876 3433 3455566666678999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
|+...+ ..|+...|.+.|..-.+.+.++.|..+|++..-. .|++.+|....+.--+.|....|..+|+.+
T Consensus 164 ferW~~--------w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerA 233 (677)
T KOG1915|consen 164 FERWME--------WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERA 233 (677)
T ss_pred HHHHHc--------CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999988 4689999999999999999999999999999874 589999999999989999999999999988
Q ss_pred HHc-CC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHhHHHHH--------HH
Q 011362 161 MDQ-GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKEL--------FV 228 (487)
Q Consensus 161 ~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~ 228 (487)
++. |- ..+...+......-..+..++.|.-+|.-.+.+ ++.+ ...|..+...--+-|+....... ++
T Consensus 234 ie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE 312 (677)
T KOG1915|consen 234 IEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYE 312 (677)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHH
Confidence 764 11 112233444444445677888999999888876 3323 34444444443445554433332 23
Q ss_pred HHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh--hHHHHHHH--------HHhcCCHHHHHHHHH
Q 011362 229 SMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV--IHNTLFVG--------LFEIHQVERAFKLFD 298 (487)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~--------~~~~~~~~~a~~~~~ 298 (487)
.+.+.+ +.|-.+|-..+..-...|+.+...++|+..+.. ++|-.. .|...+-. -....+.+.+.+++.
T Consensus 313 ~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq 390 (677)
T KOG1915|consen 313 KEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ 390 (677)
T ss_pred HHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 334443 677888888888888899999999999999886 333221 22222211 135788999999999
Q ss_pred HHHHcCCCCcHHhHHHHHHH----HHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 011362 299 EMQRNGVAADTWTYRTFIDG----LCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV 374 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (487)
..++. ++-...|+..+--. ..++.++..|.+++...+. .-|...++...|..-.+.++++.+..++++.++.+
T Consensus 391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~ 467 (677)
T KOG1915|consen 391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS 467 (677)
T ss_pred HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 99884 44445555555444 4578899999999998874 46788889999999999999999999999999874
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHH
Q 011362 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENA-VVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVS 453 (487)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 453 (487)
+-|-.+|......-...|+.+.|..+|.-+++.. .......|...|..-...|.++.|..+++++++.. +...+|.
T Consensus 468 -Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWi 544 (677)
T KOG1915|consen 468 -PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWI 544 (677)
T ss_pred -hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHH
Confidence 4566788888888888999999999999998752 22234567777777778999999999999999754 3344555
Q ss_pred HHHH
Q 011362 454 IVVD 457 (487)
Q Consensus 454 ~l~~ 457 (487)
....
T Consensus 545 sFA~ 548 (677)
T KOG1915|consen 545 SFAK 548 (677)
T ss_pred hHHH
Confidence 5543
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-15 Score=138.32 Aligned_cols=431 Identities=13% Similarity=0.081 Sum_probs=294.5
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|..++..+++.. |.+...|..|..+|-++|+.+++...+-.+.... +.|...|..+.......|.+++|.-+|
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~cy 230 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYCY 230 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHHH
Confidence 89999999999999997 5588899999999999999999999876665554 556788999999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH----HHHHHHhcCChhhHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS----VIRGFCYAKDWNEAKRLF 157 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~ 157 (487)
.++.+.. |++....-.-...|-+.|+...|.+-|.++.+...+.+..-+.. .++.+...++-+.|.+.+
T Consensus 231 ~rAI~~~-------p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~l 303 (895)
T KOG2076|consen 231 SRAIQAN-------PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKAL 303 (895)
T ss_pred HHHHhcC-------CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999987 77777777888899999999999999999988754333333333 455666777779999999
Q ss_pred HHHHHc-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---------------------------CCCHHHHHH
Q 011362 158 IEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV---------------------------RPDAFTYNT 209 (487)
Q Consensus 158 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~ 209 (487)
+..... +-..+...++.++..+.+...++.+......+..... .++..++ .
T Consensus 304 e~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-r 382 (895)
T KOG2076|consen 304 EGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-R 382 (895)
T ss_pred HHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-h
Confidence 887662 2234556778888888888888888888777665211 1122221 1
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc
Q 011362 210 LLDGFCLTGRVNHAKELFVSMESMG--CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI 287 (487)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (487)
+.-++.+....+....+.......+ ...+...|..+..+|...|++..|+.++..+......-+...|..+..+|...
T Consensus 383 l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 383 LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 2223333444444444444444444 33345667777888888888888888888887765555666778888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH--------cCCCCChHhHHHHHHHHHhcCC
Q 011362 288 HQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI--------LKCEFDIRAYNSLIDGLCKSGR 359 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~ 359 (487)
|..+.|...|+.++... +.+...-..|...+.+.|+.++|.+.+..+.. ...+|...........+.+.|+
T Consensus 463 ~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk 541 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK 541 (895)
T ss_pred hhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence 88888888888887752 33445566666777788888888888777542 1223344444444455555555
Q ss_pred HHHHHHHHHhccCC----------------------------------------C----------CC-----------Cc
Q 011362 360 LEIALELFRSLPCG----------------------------------------V----------LV-----------PN 378 (487)
Q Consensus 360 ~~~a~~~~~~~~~~----------------------------------------~----------~~-----------~~ 378 (487)
.++-..+...|+.. . .. .+
T Consensus 542 ~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Ls 621 (895)
T KOG2076|consen 542 REEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLS 621 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCc
Confidence 54432222221100 0 00 01
Q ss_pred H----HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CCHH---HH-HHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 379 V----VTYSIMIGGLCNDGQMDKARDLFLDMEENAVV-PNVI---TF-DMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 379 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~---~~-~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
. ..+.-++.++++.+++++|+.+...+...... -+.. .+ ...+.+.+..+++..|...++.|...
T Consensus 622 iddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~ 695 (895)
T KOG2076|consen 622 IDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ 695 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1 11234566778888999999988888754211 1111 22 34455667888999999998888753
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.9e-17 Score=136.60 Aligned_cols=410 Identities=14% Similarity=0.112 Sum_probs=264.3
Q ss_pred chHHHHHHHHHhCCCCCCHHhH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHH
Q 011362 5 SHGFVVLGRILKSCFTPDAVTF-TSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.+|+..|+-+++..--|+...+ -.+...+.+.+++.+|+++|+..+..-...+ ..+.+.+...+.+.|+++.|+.
T Consensus 218 ~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dain 297 (840)
T KOG2003|consen 218 AEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAIN 297 (840)
T ss_pred HHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHh
Confidence 4555555555544333444333 2345667777788888888877765521222 2234555566778888888888
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC------------CCHhhHHHHH-----H
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIK------------PNVVTYTSVI-----R 142 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------~~~~~~~~l~-----~ 142 (487)
-|+...+.. |+..+-..|+-++..-|+.++..+.|.+|...-.. |+....+..+ +
T Consensus 298 sfdh~m~~~--------pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk 369 (840)
T KOG2003|consen 298 SFDHCMEEA--------PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLK 369 (840)
T ss_pred hHHHHHHhC--------ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHH
Confidence 888877743 55554444555555667788888888887654221 2222222111 1
Q ss_pred HHHhcC--ChhhHHHHHHHHHHcCCCCChh-------------hH--------HHHHHHHHhCCChHHHHHHHHHHHHCC
Q 011362 143 GFCYAK--DWNEAKRLFIEMMDQGVQPNVV-------------TF--------NVIMDELCKNGKMDEASRLLDLMIQHG 199 (487)
Q Consensus 143 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~-------------~~--------~~l~~~~~~~~~~~~a~~~~~~~~~~~ 199 (487)
-.-+.+ +.++++-.-.+++.--+.|+-. .+ ..-...+.+.|+++.|++++.-+.+..
T Consensus 370 ~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kd 449 (840)
T KOG2003|consen 370 NMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKD 449 (840)
T ss_pred HHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhcc
Confidence 111111 1122221111121111112110 00 011235677788888777777665542
Q ss_pred CCCCHHH------------------------------------HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 011362 200 VRPDAFT------------------------------------YNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYS 243 (487)
Q Consensus 200 ~~~~~~~------------------------------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 243 (487)
-+.-... ...-.......|++++|.+.+++....+..- .....
T Consensus 450 nk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc-~ealf 528 (840)
T KOG2003|consen 450 NKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASC-TEALF 528 (840)
T ss_pred chhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHH-HHHHH
Confidence 2111111 1111111224578999999999988654222 22233
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCC
Q 011362 244 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNG 323 (487)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 323 (487)
.+.-.+-..|+.++|+++|-++..- ...+..++..+...|....+..+|++++.+.... ++.|+..+..+...|-+.|
T Consensus 529 niglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 529 NIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEG 606 (840)
T ss_pred HhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhccc
Confidence 3344567889999999999887653 2236778888899999999999999999888775 6778899999999999999
Q ss_pred CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH-HccCCHHHHHHHH
Q 011362 324 YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL-CNDGQMDKARDLF 402 (487)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~ 402 (487)
+-..|.+.+-.--.. +|-+..+..-|...|....-+++++.+|++..- +.|+..-|..++..| .+.|++++|..++
T Consensus 607 dksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 607 DKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred chhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 999999887655433 467888888888899999999999999998765 489999999887655 5689999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011362 403 LDMEENAVVPNVITFDMLIRGFIRINE 429 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (487)
+..-+. ++-|..++..|++.+...|-
T Consensus 684 k~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 684 KDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHh-CccchHHHHHHHHHhccccc
Confidence 998765 56688899999998887763
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.6e-14 Score=123.02 Aligned_cols=441 Identities=12% Similarity=0.028 Sum_probs=339.5
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
..+++.+++. +|.++..|...+ ...+.+.|+-++.++.+. ++.+... ..++++..-|+.|..++++..+.
T Consensus 366 ~RVlRKALe~-iP~sv~LWKaAV----elE~~~darilL~rAvec-cp~s~dL----wlAlarLetYenAkkvLNkaRe~ 435 (913)
T KOG0495|consen 366 KRVLRKALEH-IPRSVRLWKAAV----ELEEPEDARILLERAVEC-CPQSMDL----WLALARLETYENAKKVLNKAREI 435 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHH----hccChHHHHHHHHHHHHh-ccchHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 3456666665 355566665543 345666688888887765 2334443 34566677889999999999886
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHH----HhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 88 NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQM----KDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
+|.+...|..-...--..|+.+...+++++- ...|+..+...|..=...|-..|..-.+..+....+..
T Consensus 436 -------iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi 508 (913)
T KOG0495|consen 436 -------IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI 508 (913)
T ss_pred -------CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh
Confidence 4778888888888888889999888887764 44688888888988888888888888888888888877
Q ss_pred CCCC--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 164 GVQP--NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 164 ~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
|+.- -..+|..-...|.+.+.++-+..+|...++. .+.+...|......--..|..+.-..+|+++...- +.....
T Consensus 509 gvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~l 586 (913)
T KOG0495|consen 509 GVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEIL 586 (913)
T ss_pred ccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhH
Confidence 7653 2457777888899999999999999988876 34466778777777778888999999999888762 555666
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (487)
|.....-+-..|+...|..++....+..+. +...|...+.......+++.|..+|.+.... .|+...|..-+...--
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ 663 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERY 663 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHH
Confidence 777777788889999999999998886544 6778888888888999999999999988874 5677777777776677
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
.+..++|.+++++.++. ++.-...|..+.+.+.+.++.+.|.+.|..-.+. ++-.+..|-.+...--+.|.+-.|..+
T Consensus 664 ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~i 741 (913)
T KOG0495|consen 664 LDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSI 741 (913)
T ss_pred hhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHH
Confidence 88999999999888875 3555678888899999999999999998877665 345567788888888888999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc---ccccccccc
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS---LNSLPSFTV 474 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~~~~~~~~ 474 (487)
+++..-.+.. +...|...++.-.+.|+.+.|..++.++++. .+.+...|..-|....+.++- .+++++...
T Consensus 742 ldrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkce~ 815 (913)
T KOG0495|consen 742 LDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH 815 (913)
T ss_pred HHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhccC
Confidence 9999877544 7788889999999999999999988888764 355666777777666665554 455554443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-14 Score=133.38 Aligned_cols=373 Identities=15% Similarity=0.101 Sum_probs=283.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
+...-..+..+...|++++|.+++.++++.. +.....|..|...|-..|+.+++...+-.+...+ |.|...|
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-------p~d~e~W 210 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-------PKDYELW 210 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-------CCChHHH
Confidence 3334444555667799999999999999885 6677889999999999999999999988887766 6778999
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH----HHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFN----VIMDE 178 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~ 178 (487)
..+.....+.|.++.|.-.|.+.++.. +++...+-.-...|-+.|+...|...|.++....++.|..-+. ..++.
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999884 4566666667788899999999999999998875433333333 34556
Q ss_pred HHhCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC-----------------------
Q 011362 179 LCKNGKMDEASRLLDLMIQH-GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG----------------------- 234 (487)
Q Consensus 179 ~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------------- 234 (487)
+...++-+.|.+.++..... +-..+...++.++..+.+...++.+...........
T Consensus 290 ~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~ 369 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCE 369 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccccccc
Confidence 67777779999998887763 233456678888899999999999988877765511
Q ss_pred ----CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC--CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 011362 235 ----CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG--IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD 308 (487)
Q Consensus 235 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 308 (487)
..++... ..+.-++...+..+....+........ +.-+...+..+..++...|.+..|+.++..+......-+
T Consensus 370 ~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 370 VGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred CCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 1122222 123334455555555555555555555 333556788899999999999999999999998765556
Q ss_pred HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC--------CCCCcHH
Q 011362 309 TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG--------VLVPNVV 380 (487)
Q Consensus 309 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~ 380 (487)
...|..+..+|...|..++|.+.|+.++... |.+...-..|...+.+.|+.++|.+.+..+... ...|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 7789999999999999999999999999875 556667778888899999999999999986532 2345555
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
........+...|+.++=..+...|+
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv 553 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLV 553 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 55556667778888777555444443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-13 Score=118.15 Aligned_cols=416 Identities=10% Similarity=0.022 Sum_probs=319.3
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 9 VVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+-|+.-+..+ ..+...|....+.=..++++..|..+|++++... ..+...|...+..-.+......|..+++.....-
T Consensus 60 kefEd~irrn-R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l 137 (677)
T KOG1915|consen 60 KEFEDQIRRN-RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL 137 (677)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc
Confidence 3455555443 4466677777777778899999999999999765 5677788888888899999999999999988753
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN 168 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 168 (487)
|.-...|...+..--..|++..|.++|++..+. .|+...|.+.+..-.+.+.++.|..+|++.+- +.|+
T Consensus 138 -------PRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~ 206 (677)
T KOG1915|consen 138 -------PRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPK 206 (677)
T ss_pred -------chHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--eccc
Confidence 444567777777777789999999999998875 79999999999999999999999999999876 3589
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC--HhhHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGV--RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT--VFSYSI 244 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 244 (487)
..+|....+.-.+.|....+..+|+...+.-- .-+...+.++...-.++..++.|.-+|+-..+.= |.+ ...|..
T Consensus 207 v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~ 285 (677)
T KOG1915|consen 207 VSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKK 285 (677)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHH
Confidence 99999999999999999999999998876411 1123345555555557788999999998887752 333 445555
Q ss_pred HHHHHHccCCHhHHHHH--------HHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH--hHHH
Q 011362 245 LINGYCKNKEIEGALSL--------YSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTW--TYRT 314 (487)
Q Consensus 245 l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ 314 (487)
+...=-+-|+....... |+.++..+ +.|..+|-..+......|+.+...++|++++.+ ++|-.. .+..
T Consensus 286 ~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~R 363 (677)
T KOG1915|consen 286 YTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRR 363 (677)
T ss_pred HHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHH
Confidence 55554556665554443 33444443 347778888888888999999999999999987 455321 1111
Q ss_pred ---HH-----HHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHH----HHHHhcCCHHHHHHHHHhccCCCCCCcHHHH
Q 011362 315 ---FI-----DGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLI----DGLCKSGRLEIALELFRSLPCGVLVPNVVTY 382 (487)
Q Consensus 315 ---l~-----~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 382 (487)
+- -.-....+.+.+.++++..++. +|....++.-+- ..-.++.++..|.+++..++. ..|...+|
T Consensus 364 YIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlF 440 (677)
T KOG1915|consen 364 YIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLF 440 (677)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHH
Confidence 11 1113578899999999999874 455555655443 334578899999999998875 47888999
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 383 SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
...+..-.+.++++.+..++++.++.++. +..+|......-...|+.+.|..+|+-+++..
T Consensus 441 k~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 441 KGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 99999999999999999999999997543 67888888887888999999999999998643
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-15 Score=134.06 Aligned_cols=293 Identities=13% Similarity=0.014 Sum_probs=206.9
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK 111 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (487)
....|+++.|.+.+.+..+. .|++. .+.....+....|+++.|.+.+.+..+..+ .+...........+..
T Consensus 94 a~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p------~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG------NDNILVEIARTRILLA 165 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------cCchHHHHHHHHHHHH
Confidence 35789999999999887765 34433 344556778888999999999999876531 1112344445788888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH-HHHHHH---HhCCChHH
Q 011362 112 EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFN-VIMDEL---CKNGKMDE 187 (487)
Q Consensus 112 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~---~~~~~~~~ 187 (487)
.|+++.|...++.+.+.. |-+..++..+...+...|++++|.+.+..+.+.++. +...+. .-..++ ...+..++
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~ 243 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADE 243 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999998874 346778888999999999999999999999887654 333231 111111 22233333
Q ss_pred HHHHHHHHHHCCC---CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh--HHHHHHHHHccCCHhHHHHHH
Q 011362 188 ASRLLDLMIQHGV---RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS--YSILINGYCKNKEIEGALSLY 262 (487)
Q Consensus 188 a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~ 262 (487)
....+..+.+... +.+...+..+...+...|+.++|.+.+++..+.. +.+... ...........++.+.+.+.+
T Consensus 244 ~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 244 GIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-GDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred CHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 3445554444321 1377888888899999999999999999988764 222211 122222234457788888888
Q ss_pred HHHHHCCCccCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 011362 263 SEMLSKGIKPDV--VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 263 ~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 337 (487)
+...+..+. ++ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 323 e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888775322 44 566788899999999999999999544433478888888999999999999999999988653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-14 Score=130.61 Aligned_cols=284 Identities=11% Similarity=0.036 Sum_probs=215.9
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHH-HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH--HHHHHHHh
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYT-TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT--TIIDGLCK 111 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~ 111 (487)
..|++++|.+.+....+.. +++..+. ....+..+.|+++.|...+.++.+.. |+..... .....+..
T Consensus 96 ~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--------~~~~~~~~l~~a~l~l~ 165 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--------DNDQLPVEITRVRIQLA 165 (398)
T ss_pred hCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------CcchHHHHHHHHHHHHH
Confidence 4699999998888766542 2333333 33455578999999999999998754 4443322 34678888
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHhCCC
Q 011362 112 EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV-------VTFNVIMDELCKNGK 184 (487)
Q Consensus 112 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~ 184 (487)
.|+++.|...++++.+.. |-++.....+...|.+.|+|++|.+++..+.+.+..++. ..|..++.......+
T Consensus 166 ~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 166 RNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQG 244 (398)
T ss_pred CCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999998875 447788888999999999999999999999887654222 133344444445556
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHH
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSE 264 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (487)
.+...++++.+.+. .+.++.....+...+...|+.++|.+++++..+. +++... .++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 66777777766443 3457888888999999999999999999988874 455422 234444566999999999999
Q ss_pred HHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 011362 265 MLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 337 (487)
..+..+ -|+.....+...+.+.+++++|.+.|+.+.+. .|+...+..+...+.+.|+.++|.+++++...
T Consensus 320 ~lk~~P-~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 320 QIKQHG-DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHhhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 887644 36677888899999999999999999999985 68888888999999999999999999998764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-14 Score=129.02 Aligned_cols=284 Identities=12% Similarity=0.084 Sum_probs=202.5
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHcCCCHhHHH
Q 011362 147 AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTY--NTLLDGFCLTGRVNHAK 224 (487)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~ 224 (487)
.|++++|.+.+....+....| ...+.....+....|+++.+..++.++.+. .|+.... ......+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 688888887777655542121 222333344557888888888888888765 3343222 23356778888888888
Q ss_pred HHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh-------hHHHHHHHHHhcCCHHHHHHHH
Q 011362 225 ELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-------IHNTLFVGLFEIHQVERAFKLF 297 (487)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~ 297 (487)
..++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++.. ++..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 8888887775 6677788888888888888888888888888765442221 2222233333344455555555
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCC
Q 011362 298 DEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVP 377 (487)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 377 (487)
+.+-+. .+.++.....+...+...|+.++|..++++..+. ++++... ++.+....++++++.+..+...+.. +.
T Consensus 253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~ 326 (398)
T PRK10747 253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GD 326 (398)
T ss_pred HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CC
Confidence 555332 2456778888888999999999999999888874 4555332 2333445688999999998888763 55
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 378 NVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
|...+..+.+.+.+.+++++|.+.|+.+.+. .|+...+..+..++.+.|+.++|.+++++...
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677888899999999999999999999884 68888888899999999999999999988764
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-14 Score=130.91 Aligned_cols=294 Identities=11% Similarity=0.021 Sum_probs=197.3
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHH
Q 011362 145 CYAKDWNEAKRLFIEMMDQGVQPNV-VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (487)
...|+++.|.+.+.+..+.. |+. ..+-....+....|+++.+.+++....+....+...........+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35788888888887776653 332 233344566777888888888888876653222223334456777788888888
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHH---HHHhcCCHHHHHHHHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV---GLFEIHQVERAFKLFDEM 300 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~a~~~~~~~ 300 (487)
...++.+.+.. |.++..+..+...+...|+++.|.+.+..+.+.+..+.......-.. .....+..++....+..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888888775 56677788888888888888888888888887754422221111111 112233333334455555
Q ss_pred HHcCC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHh-HHHHHHHHHhcCCHHHHHHHHHhccCCCCC
Q 011362 301 QRNGV---AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRA-YNSLIDGLCKSGRLEIALELFRSLPCGVLV 376 (487)
Q Consensus 301 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 376 (487)
.+... +.+...+..++..+...|+.++|.+.+++..+..+...... ...........++.+.+.+.++...+.. +
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-p 330 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-D 330 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-C
Confidence 44321 13677788888889999999999999999887642221111 1111122234577888888888877652 3
Q ss_pred CcH--HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 377 PNV--VTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 377 ~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
.|+ ....++.+.+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344 566788899999999999999999544433568888888999999999999999999988653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-13 Score=113.53 Aligned_cols=306 Identities=12% Similarity=0.063 Sum_probs=166.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCC
Q 011362 142 RGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR--PDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 219 (487)
.++-...+.+++.+-.......|++-+...-+....+.....++++|+.+|+++.+..+- .|..+|...+-. +..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--KNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--Hhhh
Confidence 344444556666666666666665544444444555555666667777777666665211 134444444322 2211
Q ss_pred HhHHHHHHHH-HHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 220 VNHAKELFVS-MESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFD 298 (487)
Q Consensus 220 ~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (487)
- .+..+.. ....+ +..+.|...+.+.|.-.++.++|...|++.++.++. ....|..+..-|....+...|...++
T Consensus 313 s--kLs~LA~~v~~id-KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 S--KLSYLAQNVSNID-KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H--HHHHHHHHHHHhc-cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 1111111 11111 233445556666666666666666666666665433 34455666666666666666666666
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc
Q 011362 299 EMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN 378 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 378 (487)
.+.+-+ +.|-..|-.+.++|.-.+.+.-|+-+|++..... |.|...|.+|..+|.+.++.++|++.|......| ..+
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte 465 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTE 465 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccc
Confidence 666643 4455666666666666666666666666666554 5566666666666666666666666666666544 234
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEEN----AVVPN--VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIV 452 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 452 (487)
...+..+...|-+.++..+|...|.+.++. |...+ ...-..|..-+.+.+++++|-......... .+...--
T Consensus 466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eea 543 (559)
T KOG1155|consen 466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEA 543 (559)
T ss_pred hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHH
Confidence 456666666666666666666666655431 21111 112222444455666666666555444432 3333333
Q ss_pred HHHHHH
Q 011362 453 SIVVDL 458 (487)
Q Consensus 453 ~~l~~~ 458 (487)
..++..
T Consensus 544 k~LlRe 549 (559)
T KOG1155|consen 544 KALLRE 549 (559)
T ss_pred HHHHHH
Confidence 444433
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-17 Score=141.88 Aligned_cols=260 Identities=15% Similarity=0.107 Sum_probs=70.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFG-CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
.+...+.+.|++++|++++++..... .+.+...|..+.......++++.|++.++++...+ +.++..+..++
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-------~~~~~~~~~l~ 85 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-------KANPQDYERLI 85 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-------ccccccccccc
Confidence 34555666666666666664433322 12333344445555555666666666666666544 23444555555
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhCCCh
Q 011362 107 DGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKM 185 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~ 185 (487)
.. ...+++++|.++++...+. .++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.
T Consensus 86 ~l-~~~~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 86 QL-LQDGDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred cc-ccccccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 55 4556666666665554433 1344445555555566666666666666554321 223444555555555666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHH
Q 011362 186 DEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEM 265 (487)
Q Consensus 186 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (487)
++|++.+++.++.... |......++..+...|+.+++.++++...... +.++..+..+..+|...|+.++|+..+++.
T Consensus 163 ~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 6666666665554211 34455555555555566555555555554442 334444555555555555555555555555
Q ss_pred HHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011362 266 LSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM 300 (487)
Q Consensus 266 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 300 (487)
....+ .|+.....+..++...|+.++|..+..++
T Consensus 241 ~~~~p-~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 LKLNP-DDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHST-T-HHHHHHHHHHHT---------------
T ss_pred ccccc-ccccccccccccccccccccccccccccc
Confidence 54322 24455555555555555555555555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=142.42 Aligned_cols=254 Identities=16% Similarity=0.142 Sum_probs=115.2
Q ss_pred CCccchHHHHHHHHHhCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSC-FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+++++...... ++.+...|..+...+...++++.|++.++++...+ +.++..+..++.. ...+++++|.+
T Consensus 21 ~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~~~~A~~ 98 (280)
T PF13429_consen 21 RGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGDPEEALK 98 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccccccccc
Confidence 488999999997766554 35567778888888889999999999999999875 3356667777777 79999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN-IKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
+++...+. .+++..+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus 99 ~~~~~~~~--------~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 99 LAEKAYER--------DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred cccccccc--------ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99887654 3566778888999999999999999999987542 34577889999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT 238 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 238 (487)
+..+..+. +......++..+...|+.+++..++....+.. +.|+..+..+..++...|+.++|...+++..... +.|
T Consensus 171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 99987433 57778889999999999999999998887763 4466778889999999999999999999998865 678
Q ss_pred HhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 239 VFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
+.....+..++...|+.++|.++..++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 88999999999999999999999887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-13 Score=116.87 Aligned_cols=222 Identities=14% Similarity=0.114 Sum_probs=113.3
Q ss_pred HHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHH
Q 011362 214 FCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERA 293 (487)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 293 (487)
+.-.|+.-.|..-|+..++.. +.+...|-.+..+|...++.++.++.|.+....++. ++.+|..-.+...-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence 334555556666666555553 222223555555566666666666666665554433 444555555555555666666
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 294 FKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
..-|++..+.. +.+...|..+.-+..+.+.+++++..|++..+. +|.-+..|+-....+...+++++|.+.|+..++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 66666655532 222334444444444555666666666665543 3445555666666666666666666666555442
Q ss_pred C-----CCCcHHHH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 374 V-----LVPNVVTY--SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 374 ~-----~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
. +..++..+ -.++. +--.+++..|..+++++.+...+ ....|..|...-...|+.++|+++|++..
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 1 00011111 11111 11235666666666666554222 23445555555566666666666666554
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-13 Score=114.91 Aligned_cols=363 Identities=11% Similarity=0.032 Sum_probs=254.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch--
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT-- 99 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-- 99 (487)
|+..+......+.+.|....|+..|......- |..-.+|..|.... -+. +......... +.+.
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~----e~~~~l~~~l-------~~~~h~ 227 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDI----EILSILVVGL-------PSDMHW 227 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chH----HHHHHHHhcC-------cccchH
Confidence 44444445555666677777777776665442 33444444444332 111 1222221111 1111
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMD 177 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 177 (487)
..--.+..++....+.+++..-.+.....|.+.+...-+....+.....|+++|+.+|+++.+..+- -|..+|..++-
T Consensus 228 M~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY 307 (559)
T KOG1155|consen 228 MKKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY 307 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH
Confidence 1112234556666678888888888888888766666666677778889999999999999887321 14556665543
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG 257 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (487)
. +..+. .+.++..-...-.+--+.|.-.+.+-|.-.++.++|...|+...+.+ |.....|+.+.+-|....+...
T Consensus 308 v--~~~~s--kLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 308 V--KNDKS--KLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred H--HhhhH--HHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHH
Confidence 3 32221 12222211111112234566777888888999999999999999987 6677889999999999999999
Q ss_pred HHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 011362 258 ALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 258 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 337 (487)
|++.|+..++-.+. |...|-.+.++|.-.+-+.=|+-.|++..... +.|...+..+.++|.+.++.++|+..|.....
T Consensus 383 Ai~sYRrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 99999999987544 88899999999999999999999999998863 66789999999999999999999999999998
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC----C-CCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 338 LKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG----V-LVP-NVVTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
.+ ..+...+..|...|.+.++.++|...|.+.++. | +.| ....--.|...+.+.+++++|.........
T Consensus 461 ~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 461 LG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 77 567789999999999999999999999876641 2 223 223333456667788888888776655544
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-14 Score=113.00 Aligned_cols=275 Identities=12% Similarity=0.089 Sum_probs=149.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF 114 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (487)
-.++.++|++.|-+|.+.. +.+..+..+|.+.|.+.|..+.|+.+.+.+.++.. .+......+...|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spd---lT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPD---LTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHhhh
Confidence 3456667777777766543 33444555666777777777777777776665431 1111122344455666666677
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhCCChHHHHH
Q 011362 115 VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~ 190 (487)
++.|+++|..+.+.+. --......|+..|-...+|++|++.-+++.+.+..+.. ..|..+...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 7777777766665432 23445566666676677777777776666665443321 123344444445556666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCC
Q 011362 191 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 270 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 270 (487)
++.+..+.+.. .+..--.+.+.....|+++.|.+.++.+.+.+...-+.+...|..+|...|+.++....+..+.+...
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 66666554322 23333344555666666666666666666554444445555566666666666666666666655422
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHH
Q 011362 271 KPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGL 319 (487)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 319 (487)
.......+........-.+.|...+.+-... .|+...+..++..-
T Consensus 281 --g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~ 325 (389)
T COG2956 281 --GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYH 325 (389)
T ss_pred --CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhh
Confidence 2222233333333444444444444443332 45555555555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-13 Score=110.20 Aligned_cols=421 Identities=12% Similarity=0.061 Sum_probs=247.2
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
++..|+.+++--...+-.....+---+..++.+.|++++|+..+..+.... .++...+..+...+.-.|.+.+|.++-.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ 115 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAE 115 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 566777777776655433222334446788889999999999998887754 5666777777777788889999988877
Q ss_pred HHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 83 EMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
+..+ ++..-..+.....+.++-++-....+.+... ..--.+|.......-.+.+|++++.+...
T Consensus 116 ka~k-----------~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~ 179 (557)
T KOG3785|consen 116 KAPK-----------TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQ 179 (557)
T ss_pred hCCC-----------ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6433 3444555556666777777766666665542 23344566666666788999999999877
Q ss_pred cCCCCChhhHHHHH-HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC-------
Q 011362 163 QGVQPNVVTFNVIM-DELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG------- 234 (487)
Q Consensus 163 ~~~~~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 234 (487)
. .|.-...|..+ -+|.+..-++-+.+++.-.++. ++.++...+..+....+.=+-..|..-.+.+.+.+
T Consensus 180 d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~ 256 (557)
T KOG3785|consen 180 D--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFI 256 (557)
T ss_pred c--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhH
Confidence 5 34444444433 4677888888888888877765 23233334433322222211112222222221110
Q ss_pred -------------------C-----CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCC-
Q 011362 235 -------------------C-----KHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQ- 289 (487)
Q Consensus 235 -------------------~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 289 (487)
+ ..-+.....++-.|.+.+++++|..+.+++... ++.-|..-...+...|+
T Consensus 257 ~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 257 EYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQE 332 (557)
T ss_pred HHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhh
Confidence 0 011233345556677778888887776654321 22222222222333333
Q ss_pred ------HHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 011362 290 ------VERAFKLFDEMQRNGVAADT-WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362 (487)
Q Consensus 290 ------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (487)
..-|.+.|.-.-+++..-|. .--..+...+.-..++++.+.+++.+...-...|... -.+.++++..|++.+
T Consensus 333 ~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~e 411 (557)
T KOG3785|consen 333 TGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVE 411 (557)
T ss_pred cCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHH
Confidence 33444555444444333222 2233445555556677777777777765533333333 356788888888888
Q ss_pred HHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHHH
Q 011362 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITF-DMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
|.++|-.+....++....-...+.++|.+++.++-|+.++-++.. +.+..++ ..+...|.+.+.+--|.+.|+.+.
T Consensus 412 aEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 412 AEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 888888777554333333334556788888888888776554432 2233333 344566778888877777777776
Q ss_pred hcCCCCCHHHHH
Q 011362 442 EINVMPDASIVS 453 (487)
Q Consensus 442 ~~~~~~~~~~~~ 453 (487)
.. .|++..|.
T Consensus 489 ~l--DP~pEnWe 498 (557)
T KOG3785|consen 489 IL--DPTPENWE 498 (557)
T ss_pred cc--CCCccccC
Confidence 63 46666664
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=8.6e-15 Score=130.10 Aligned_cols=287 Identities=15% Similarity=0.088 Sum_probs=165.9
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhH
Q 011362 38 RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDK 117 (487)
Q Consensus 38 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 117 (487)
+..+|+..|.++... +.-.......++.+|...+++++|.++|+.+.+..+-. -.+.+.|.+.+-.+-+ +-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~r----v~~meiyST~LWHLq~----~v 404 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYR----VKGMEIYSTTLWHLQD----EV 404 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc----ccchhHHHHHHHHHHh----hH
Confidence 456677777664333 23333455566677777777777777777776655321 2244555555544322 11
Q ss_pred HHHHH-HHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011362 118 AKELL-LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 118 a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 196 (487)
++..+ +.+... .+-.+.+|..+..+|.-+++.+.|++.|++.++.... ...+|+.+..-+.....++.|...|+..+
T Consensus 405 ~Ls~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 405 ALSYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22222 122222 2335667777777777777777777777776664211 45566666666666666777777776665
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhh
Q 011362 197 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI 276 (487)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 276 (487)
..... +-..|..+...|.+.++++.|+-.|+++.+.+ |.+......+...+.+.|+.++|+.++++....+.. |+..
T Consensus 483 ~~~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~ 559 (638)
T KOG1126|consen 483 GVDPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLC 559 (638)
T ss_pred cCCch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-Cchh
Confidence 44211 33344555666667777777777776666655 455555666666666667777777777766665443 3444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
....+..+...+++++|+..++++++. ++.+...+..+...|.+.|+.+.|+.-|--+.+..
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 444455556666666676666666664 23334555566666666666666666666665543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-12 Score=108.52 Aligned_cols=292 Identities=13% Similarity=0.111 Sum_probs=223.1
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHH
Q 011362 146 YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKE 225 (487)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (487)
..|+|.+|+++..+..+.+..| ...|..-+.+....|+.+.+-+++.++.+....++....-...+.....|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3789999999999888876554 344566667778889999999999988876445566667777788888999999999
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh-------hHHHHHHHHHhcCCHHHHHHHHH
Q 011362 226 LFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-------IHNTLFVGLFEIHQVERAFKLFD 298 (487)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~ 298 (487)
-+.++.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+.. ++..+++-....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 888888876 6677888889999999999999999999999887655543 44555555555555555555665
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc
Q 011362 299 EMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN 378 (487)
Q Consensus 299 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 378 (487)
..-.. ...++.....++.-+.++|+.++|.++..+..+.+..++ . ...-.+.+-++.+.-++..+...... +.+
T Consensus 254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~ 327 (400)
T COG3071 254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PED 327 (400)
T ss_pred hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCC
Confidence 55433 345666777888889999999999999999988766555 2 22233456777777777777665542 445
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMP 447 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 447 (487)
+..+.+|...|.+.+.+.+|...|+...+ ..|+..+|..+.+++.+.|++.+|.++.++.+..-.+|
T Consensus 328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 67888999999999999999999998887 46899999999999999999999999988877443333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-13 Score=110.15 Aligned_cols=288 Identities=10% Similarity=0.063 Sum_probs=220.2
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD---VFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~ 78 (487)
++.++|+.+|-.+++.+ +.+..+--+|.+.+.+.|..+.|+++.+.+.++.--+. ..+...|.+-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 57899999999999976 44677788899999999999999999999987521111 124566788899999999999
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----HhhHHHHHHHHHhcCChhhHH
Q 011362 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPN----VVTYTSVIRGFCYAKDWNEAK 154 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~ 154 (487)
++|..+.+.+ .--......|+..|-...+|++|+++-+++.+.+..+. ...|.-|...+....+++.|.
T Consensus 128 ~~f~~L~de~-------efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~ 200 (389)
T COG2956 128 DIFNQLVDEG-------EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR 200 (389)
T ss_pred HHHHHHhcch-------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence 9999998765 44567888999999999999999999999988764433 235666777777788999999
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 155 RLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
.++.+..+.+.+ .+..--.+.+.....|+++.|.+.++...+.+..--+.+...|..+|...|+.++....+..+.+..
T Consensus 201 ~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 201 ELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 999999886433 3344445677889999999999999999998766667788899999999999999999999988763
Q ss_pred CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc---CCHHHHHHHHHHHHH
Q 011362 235 CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI---HQVERAFKLFDEMQR 302 (487)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 302 (487)
+....-..+...-....-.+.|...+.+-+.. .|+...+..++...... |...+.+..+..|..
T Consensus 280 --~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 280 --TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred --CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 34444455555544455556666555544443 48888888888876543 334445555555543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.9e-14 Score=119.71 Aligned_cols=421 Identities=12% Similarity=0.007 Sum_probs=265.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
.+.....-+.+.|.+++|++.|.++++. .|+ +.-|.....+|...|++++..+--.+..+.+ |.-...+.
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-------P~Y~KAl~ 187 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-------PDYVKALL 187 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-------cHHHHHHH
Confidence 3555667788889999999999998886 566 5567778888888999999888888888765 34456667
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH-cC--CCCChhhHHHHHHHH
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDK-NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD-QG--VQPNVVTFNVIMDEL 179 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~ 179 (487)
.-.+++-..|++++|+.-..-..-. |+. +..+- .++.-..+ ..|..-.++-.+ .+ +-|+..........+
T Consensus 188 RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s~~-~~~eR~Lk----k~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 188 RRASAHEQLGKFDEALFDVTVLCILEGFQ-NASIE-PMAERVLK----KQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HHHHHHHhhccHHHHHHhhhHHHHhhhcc-cchhH-HHHHHHHH----HHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 7777777788887775433322111 111 11111 11111111 122222222222 11 123333333332222
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCHhHHHHHHHHHHHc---CCC---CC------HhhHHHHH
Q 011362 180 CKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL-TGRVNHAKELFVSMESM---GCK---HT------VFSYSILI 246 (487)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~---~~~---~~------~~~~~~l~ 246 (487)
...-.. .+...+...|...-..+-..+.. ...+..|...+.+-... ... .| ..+...-.
T Consensus 262 ~~~~~~--------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~g 333 (606)
T KOG0547|consen 262 HADPKP--------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRG 333 (606)
T ss_pred cccccc--------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhh
Confidence 110000 00000000011000000000000 01122332222221100 000 01 11222223
Q ss_pred HHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHh
Q 011362 247 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIV 326 (487)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 326 (487)
..+.-.|+.-.|..-|+..+.....++ ..|..+...|....+.++....|....+.+ +.++.+|..-.+.+.-.++++
T Consensus 334 tF~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 334 TFHFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence 345567899999999999998755533 337888888999999999999999999875 456778888888888999999
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 327 EAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 327 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
+|..-|++.+... |.+...|..+..+..+.+.++++...|++.+.. ++..+..|+.....+..+++++.|.+.|+..+
T Consensus 412 ~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai 489 (606)
T KOG0547|consen 412 EAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI 489 (606)
T ss_pred HHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence 9999999999876 567777888888888899999999999999876 46667899999999999999999999999998
Q ss_pred hCCCCCC-------HH--HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccch
Q 011362 407 ENAVVPN-------VI--TFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVHE 476 (487)
Q Consensus 407 ~~~~~~~-------~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 476 (487)
+. .|+ .. +-..++-.- -.+++..|..+++++.+.+ +-....+..+....-..|+..++++-|..+.
T Consensus 490 ~L--E~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 490 EL--EPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred hh--ccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 74 333 11 112222222 3389999999999999865 2334567888888899999999998887654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.9e-13 Score=115.15 Aligned_cols=284 Identities=11% Similarity=0.001 Sum_probs=195.2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILIN 247 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (487)
+......-..-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- |..+.+|..+..
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33344444555667778888888888877763 3455555555667777777666666666666553 666777888888
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhH
Q 011362 248 GYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVE 327 (487)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 327 (487)
.|...|+.++|.+.|.+....+.. -...|..+...+.-.+..++|...+..+-+. ++-....+--+..-|.+.+....
T Consensus 321 YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHH
Confidence 888888888888888877654332 2346777778888888888888888776654 11122223334445777888888
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC------CCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 328 AVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG------VLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 328 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
|..+|....... |.|+...+.+.-.....+.+.+|..+|+..+.. ...--..+++.|+.+|.+.+.+++|+..
T Consensus 399 Ae~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 399 AEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 888888877654 667777777777777778888888888766521 0011334677788888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (487)
+++.+... +.+..++.++.-.|...|+.+.|.+.|.+.+- +.|+..+...+++..
T Consensus 478 ~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 478 YQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 88887763 33777888888888888888888888888876 557776665555433
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-13 Score=110.56 Aligned_cols=292 Identities=12% Similarity=0.076 Sum_probs=141.6
Q ss_pred cCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 71 TSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
.|++.+|+++..+..+.+ +.....|..-+.+.-+.|+.+.+-.++.+..+.-..++.....+..+.....|+.
T Consensus 97 eG~~~qAEkl~~rnae~~-------e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~ 169 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-------EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDY 169 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-------cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCc
Confidence 455555555555544443 2233444444455555555555555555554442233444444455555555555
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
..|..-.+++.+.+.. .+.......++|.+.|++.....++..+.+.+.-.+...-..
T Consensus 170 ~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~l--------------------- 227 (400)
T COG3071 170 PAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARL--------------------- 227 (400)
T ss_pred hhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHH---------------------
Confidence 5555555555554333 344445555555555555555555555555544322211000
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHH
Q 011362 231 ESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTW 310 (487)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 310 (487)
...++..+++-....+..+.-...++..... ...++..-..++.-+.+.|+.++|.++..+..+.+..|.
T Consensus 228 -------e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-- 297 (400)
T COG3071 228 -------EQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-- 297 (400)
T ss_pred -------HHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--
Confidence 0122333343333333333333344333322 122344444455555555555555555555555443332
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
. ...-.+.+-++...-++..+...+.. +.++..+.+|...|.+.+.+.+|...|+..... .|+..+|+.+..++.
T Consensus 298 -L-~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~ 372 (400)
T COG3071 298 -L-CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALD 372 (400)
T ss_pred -H-HHHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHH
Confidence 1 11112334455554444444444332 344455556666666666666666666655543 456666666666666
Q ss_pred ccCCHHHHHHHHHHHH
Q 011362 391 NDGQMDKARDLFLDME 406 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~ 406 (487)
+.|+..+|..+.++..
T Consensus 373 ~~g~~~~A~~~r~e~L 388 (400)
T COG3071 373 QLGEPEEAEQVRREAL 388 (400)
T ss_pred HcCChHHHHHHHHHHH
Confidence 6666666666655554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-14 Score=126.17 Aligned_cols=288 Identities=13% Similarity=0.035 Sum_probs=203.8
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHhHHHH
Q 011362 148 KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV--RPDAFTYNTLLDGFCLTGRVNHAKE 225 (487)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 225 (487)
-++.+|+..|..+..+ +.-+..+...+.++|...+++++|.++|+.+.+... .-+..+|...+..+-+ +-++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 3567888888885554 232445666778888888899999999988877531 1245666666554321 12222
Q ss_pred HH-HHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011362 226 LF-VSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG 304 (487)
Q Consensus 226 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (487)
.+ +.+.+.. +..+.+|.++.++|.-+++++.|++.|++.+..+.. ...+|..+..-+.....+|.|...|+..+...
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 2333332 667788888999998889999999998888875332 45567767677777888888888888877532
Q ss_pred CCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHH
Q 011362 305 VAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSI 384 (487)
Q Consensus 305 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (487)
+-+-..|.-+...|.+.++++.|+-.|+++.+.+ |.+......+...+.+.|+.++|+.+++++.... +.|+..-..
T Consensus 486 -~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~ 562 (638)
T KOG1126|consen 486 -PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYH 562 (638)
T ss_pred -chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHH
Confidence 2223455556777888888888988888888776 5667777778888888888889999888887654 345544455
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011362 385 MIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVM 446 (487)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (487)
.+..+...+++++|+..++++.+. ++-+...|..+.+.|.+.|+.+.|+.-|--|.+.+.+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 566677788888998888888874 2224566777888888888888888888888775533
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.6e-11 Score=109.15 Aligned_cols=450 Identities=14% Similarity=0.052 Sum_probs=288.9
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
++|...++..+.+++. .+-...+.....-.+...|+-++|........+.. ..+...|..++-.+....++++|++.|
T Consensus 21 kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy 98 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCY 98 (700)
T ss_pred HHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHH
Confidence 5677778888888885 45567776666666777888888888888877654 455667888888888888899999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
..+...+ +.|...+.-+...-++.|+++.....-..+.+.. +.....|..++.++.-.|+...|..+++...
T Consensus 99 ~nAl~~~-------~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 99 RNALKIE-------KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHhcC-------CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888876 6677788777777777888888877777776652 2245567778888888888999988888887
Q ss_pred HcC-CCCChhhHHHHH------HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 162 DQG-VQPNVVTFNVIM------DELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 162 ~~~-~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
+.. -.|+...+.... ....+.|..+.|.+.+..-... +......-..-...+.+.+++++|..++..+...+
T Consensus 171 ~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn 249 (700)
T KOG1156|consen 171 KTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN 249 (700)
T ss_pred HhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC
Confidence 653 245555444322 2345677778887777655433 11122222334556778888999999998888774
Q ss_pred CCCCHhhHH-HHHHHHHccCCHhHHH-HHHHHHHHCCCccChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 011362 235 CKHTVFSYS-ILINGYCKNKEIEGAL-SLYSEMLSKGIKPDVVIHNTL-FVGLFEIHQVERAFKLFDEMQRNGVAADTWT 311 (487)
Q Consensus 235 ~~~~~~~~~-~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (487)
||...|. .+..++.+-.+.-++. .+|....+. ++ .......+ +.......-.+....++....+.|+++-...
T Consensus 250 --Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~-r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~d 325 (700)
T KOG1156|consen 250 --PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YP-RHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKD 325 (700)
T ss_pred --chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-Cc-ccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhh
Confidence 4444444 4444544333333444 555555443 11 11111111 1222222233445556667777776553332
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHH--------Hc----------CCCCChHhH--HHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 312 YRTFIDGLCKNGYIVEAVELFHTLR--------IL----------KCEFDIRAY--NSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 312 ~~~l~~~~~~~~~~~~a~~~~~~~~--------~~----------~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
+..+ |-. +...- +++++. .. .-+|++..| ..++..+-..|+++.|...++..+
T Consensus 326 l~SL---yk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI 398 (700)
T KOG1156|consen 326 LRSL---YKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI 398 (700)
T ss_pred hHHH---Hhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 2222 211 11111 222221 11 014555444 456777888999999999999999
Q ss_pred CCCCCCcH-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC--C
Q 011362 372 CGVLVPNV-VTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMP--D 448 (487)
Q Consensus 372 ~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~ 448 (487)
+. .|+. ..|..-.+.+...|++++|...+++..+.. .+|...=..-+.-..++++.++|.++.....+.|... +
T Consensus 399 dH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~ 475 (700)
T KOG1156|consen 399 DH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNN 475 (700)
T ss_pred cc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhh
Confidence 86 5654 566667788999999999999999998864 3355443356666778999999999999988766411 1
Q ss_pred H----HHHH--HHHHHHHhcccccccccccccch
Q 011362 449 A----SIVS--IVVDLLAKNEISLNSLPSFTVHE 476 (487)
Q Consensus 449 ~----~~~~--~l~~~~~~~g~~~~~~~~~~~~~ 476 (487)
- -.|- .-+++|.+.|++-.|+++|...+
T Consensus 476 L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 476 LAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 0 1121 22467888888888888877655
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.2e-11 Score=108.40 Aligned_cols=421 Identities=14% Similarity=0.104 Sum_probs=272.6
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+|+-++|.......++.+ ..+.++|..+.-.+....++++|++.|..++..+ +.|..++..+.-.-++.|+++.....
T Consensus 54 lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t 131 (700)
T KOG1156|consen 54 LGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET 131 (700)
T ss_pred ccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence 588899999999999876 4488899999999999999999999999999986 67788898888888889999988888
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHH------HHHHHhcCChhhH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN-IKPNVVTYTSV------IRGFCYAKDWNEA 153 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l------~~~~~~~~~~~~a 153 (487)
-....+.. +.....|..++.+..-.|+...|..+++...+.. ..|+...+... .....+.|.+++|
T Consensus 132 r~~LLql~-------~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~a 204 (700)
T KOG1156|consen 132 RNQLLQLR-------PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKA 204 (700)
T ss_pred HHHHHHhh-------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence 88887765 5667889999999999999999999999988764 24565555433 2344677888888
Q ss_pred HHHHHHHHHcCCCCChhh-HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-cCCCHhHHH-HHHHHH
Q 011362 154 KRLFIEMMDQGVQPNVVT-FNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC-LTGRVNHAK-ELFVSM 230 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~-~~~~~~ 230 (487)
.+.+...... +. |... -..-...+.+.+++++|..++..++.. .||..-|...+..+. ...+.-++. .+|...
T Consensus 205 le~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~l 280 (700)
T KOG1156|consen 205 LEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAIL 280 (700)
T ss_pred HHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888765443 11 2222 234456778999999999999999987 456655555444433 333333444 555554
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----cC--
Q 011362 231 ESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR----NG-- 304 (487)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-- 304 (487)
.+. .+........=+....-..-.+....++......|+++ ++..+...|-.....+-..++.-.+.. .+
T Consensus 281 s~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f 356 (700)
T KOG1156|consen 281 SEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMF 356 (700)
T ss_pred hhc-CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCC
Confidence 433 11111111111111112223344455666666666653 233333333222221111111111111 00
Q ss_pred --------CCCcH--HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 011362 305 --------VAADT--WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV 374 (487)
Q Consensus 305 --------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (487)
-+|.. +++..++..+-+.|+++.|..+++....+. |.-+..|..=.+.+...|++++|..++.+..+..
T Consensus 357 ~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT-PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 357 NFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT-PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred CcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC-chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 13333 455567778888899999999998888653 3334455556677888899999999998888764
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--C----HHHHHHH--HHHHHhcCChhHHHHHHHHH
Q 011362 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP--N----VITFDML--IRGFIRINEPSKVIELLHKM 440 (487)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~----~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 440 (487)
.||...-.--+.-..+.++.++|.++.....+.|... + .-.|-.+ ..+|.+.|++..|++-+...
T Consensus 436 -~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 436 -TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred -chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 4555444455556677888899988888887765310 0 1122222 34567777776666544443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-11 Score=102.30 Aligned_cols=422 Identities=13% Similarity=0.116 Sum_probs=268.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+|+|++|+..|..+.+.. .++...+-.|.-++.-.|.+.+|..+-.+.. .++-....++....+.++-++-..+
T Consensus 70 LgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 70 LGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred hccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHH
Confidence 589999999999998875 5677778888888889999999999876643 3334445556666677776666655
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH-HHHHHHhcCChhhHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS-VIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~ 159 (487)
-+.+.. +..--..|.....-.-.+++|+++|.+....+ |.-...+. +..+|.+..-++-+.++++-
T Consensus 144 h~~LqD-----------~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~v 210 (557)
T KOG3785|consen 144 HSSLQD-----------TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKV 210 (557)
T ss_pred HHHHhh-----------hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHH
Confidence 555433 12333344444444456788888888877652 33334443 34455666667777777776
Q ss_pred HHHcCCCCChhhHHHHHHHHHh--CCC---------------------------------hHHHHHHHHHHHHCCCCCCH
Q 011362 160 MMDQGVQPNVVTFNVIMDELCK--NGK---------------------------------MDEASRLLDLMIQHGVRPDA 204 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~--~~~---------------------------------~~~a~~~~~~~~~~~~~~~~ 204 (487)
..+. ++.++...|..+....+ .|+ -+.|++++--+.+. -+
T Consensus 211 YL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IP 285 (557)
T KOG3785|consen 211 YLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IP 285 (557)
T ss_pred HHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----Ch
Confidence 6654 22233333332222221 111 12333333333222 12
Q ss_pred HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC-------CHhHHHHHHHHHHHCCCccCh-hh
Q 011362 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNK-------EIEGALSLYSEMLSKGIKPDV-VI 276 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~-~~ 276 (487)
..-..|+--|.+.+++++|..+.+++. |.++.-|..-.-.+...| ...-|.+.|+-+-+++..-|. ..
T Consensus 286 EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpG 361 (557)
T KOG3785|consen 286 EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPG 361 (557)
T ss_pred HhhhhheeeecccccHHHHHHHHhhcC----CCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccc
Confidence 334456667889999999999887765 334443333333333333 345566666655555443332 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK 356 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (487)
...+...+.-..++++++.+++.+...- ..|......+.++++..|.+.+|+++|-.+....++.+..-...|..+|.+
T Consensus 362 RQsmAs~fFL~~qFddVl~YlnSi~sYF-~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~ 440 (557)
T KOG3785|consen 362 RQSMASYFFLSFQFDDVLTYLNSIESYF-TNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIR 440 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHh
Confidence 5566677777889999999999888763 334444556788999999999999999888765555455555677889999
Q ss_pred cCCHHHHHHHHHhccCCCCCCcHHHH-HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011362 357 SGRLEIALELFRSLPCGVLVPNVVTY-SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIE 435 (487)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (487)
.+.++.|.+++-++-. +.+..+. ..+...|.+.+.+=-|.+.|+.+... .|++..|. |+-.....
T Consensus 441 nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe---------GKRGACaG 506 (557)
T KOG3785|consen 441 NKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENWE---------GKRGACAG 506 (557)
T ss_pred cCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC---------CccchHHH
Confidence 9999999998876653 2233333 34456788999999999999988874 67777774 33334455
Q ss_pred HHHHHHhcCCCC-CHHHHHHHHHHHHhcccc
Q 011362 436 LLHKMKEINVMP-DASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 436 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 465 (487)
+|..+....-.| .....+-++..+...++.
T Consensus 507 ~f~~l~~~~~~~~p~~~~rEVvhllr~~~ns 537 (557)
T KOG3785|consen 507 LFRQLANHKTDPIPISQMREVVHLLRMKPNS 537 (557)
T ss_pred HHHHHHcCCCCCCchhHHHHHHHHHHhCCCc
Confidence 666666544333 345667777777776665
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.7e-12 Score=108.81 Aligned_cols=286 Identities=14% Similarity=0.091 Sum_probs=226.8
Q ss_pred CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011362 131 KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTL 210 (487)
Q Consensus 131 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 210 (487)
.-+.........-+...+++.+..++.+...+. .++....+..-+.++...|+..+-..+=..+.+. .+..+.+|..+
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 335666666777788899999999999999876 3456666777777999999988888888888876 44577889999
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCH
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQV 290 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (487)
.--|...|+..+|.+.|.+....+ +.-...|..+...|.-.+..+.|...|....+.- +-...-+..+.--|.+.++.
T Consensus 319 g~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccH
Confidence 999999999999999999987765 2334578999999999999999999998877641 11222233445567889999
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC------CCChHhHHHHHHHHHhcCCHHHHH
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC------EFDIRAYNSLIDGLCKSGRLEIAL 364 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~a~ 364 (487)
+.|.++|.+..... +.|+..++.+.......+.+.+|..+|+.....-. ..-..+++.|..+|.+.+.+++|+
T Consensus 397 kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 99999999998763 56677788887777788999999999988762110 123456899999999999999999
Q ss_pred HHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011362 365 ELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGF 424 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (487)
..+++.+... +.+..++.+++-.|...|+++.|...|.+.+. +.|+..+-..++..+
T Consensus 476 ~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 476 DYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 9999988763 66889999999999999999999999999987 567776666665543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-12 Score=123.56 Aligned_cols=269 Identities=13% Similarity=0.040 Sum_probs=192.6
Q ss_pred CCCHHhHHHHHHHHH-----hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH---------ccCChHHHHHHHHHHH
Q 011362 20 TPDAVTFTSLIKGLC-----AESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC---------RTSHTIVALNLFEEMA 85 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~ 85 (487)
+.+...|...+++.. ..+++++|+..|+++.+.. +.+...|..+..++. ..+++++|...++++.
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 456666666555532 2356899999999999874 334556666655443 2345889999999999
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGV 165 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 165 (487)
+.+ |.+...+..+..++...|++++|...|++..+.+ +.+...+..+..++...|++++|...++++.+..+
T Consensus 332 ~ld-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P 403 (553)
T PRK12370 332 ELD-------HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDP 403 (553)
T ss_pred hcC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 987 6778889999999999999999999999998874 34677888899999999999999999999988754
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHH
Q 011362 166 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSIL 245 (487)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 245 (487)
. +...+..++..+...|++++|...++++.....+.++..+..+..++...|+.++|...+.++.... +.+....+.+
T Consensus 404 ~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l 481 (553)
T PRK12370 404 T-RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLL 481 (553)
T ss_pred C-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHH
Confidence 3 2223334455567789999999999998766433355567778888899999999999998876552 3344455666
Q ss_pred HHHHHccCCHhHHHHHHHHHHHCC-CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011362 246 INGYCKNKEIEGALSLYSEMLSKG-IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG 304 (487)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (487)
...|...| +.|...++.+.+.. ..+....+ ....+.-.|+.+.+..+ +++.+.+
T Consensus 482 ~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 482 YAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 66777777 47777777766531 11221222 44455566777766665 7776653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-09 Score=97.31 Aligned_cols=461 Identities=10% Similarity=0.085 Sum_probs=294.2
Q ss_pred CccchHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFT-PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
|+..+.+..|++++..-+. ....+|...+......|-++-++.++++.++. ++..-.-.+..++..++.++|.+.
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~ 191 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQR 191 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHH
Confidence 4556677788888776421 23557888888888888888999999998864 344466677888899999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCC--HhhHHHHHHHHHhcCChhhHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVD---KAKELLLQMKDKNIKPN--VVTYTSVIRGFCYAKDWNEAKR 155 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~ 155 (487)
+..+...+.-.+...+.+...|..+....++..+.- ....+++.+... -+| ...|.+|...|.+.|.+++|.+
T Consensus 192 la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 192 LATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 998876653333334566777887777776654433 333444444433 223 3468999999999999999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHHhC----------------CC------hHHHHHHHHHHHHCC-----------CCC
Q 011362 156 LFIEMMDQGVQPNVVTFNVIMDELCKN----------------GK------MDEASRLLDLMIQHG-----------VRP 202 (487)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------~~------~~~a~~~~~~~~~~~-----------~~~ 202 (487)
+|++.+..- .+..-|..+..+|+.- ++ ++-...-|+.+.... -+.
T Consensus 270 vyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 270 VYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 999987752 2333344444444321 11 122223333333221 111
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC------CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC---
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKH------TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--- 273 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--- 273 (487)
++..|..-.. ...|+..+-...+.++...- .| -...|..+...|-..|+.+.|..+|++......+.-
T Consensus 348 nV~eW~kRV~--l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dL 424 (835)
T KOG2047|consen 348 NVEEWHKRVK--LYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDL 424 (835)
T ss_pred cHHHHHhhhh--hhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHH
Confidence 2333332222 23456667777777765431 12 224578889999999999999999999887644321
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CC------cHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 011362 274 VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGV-----------AA------DTWTYRTFIDGLCKNGYIVEAVELFHTLR 336 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 336 (487)
..+|......-.++.+++.|++++.......- ++ +...+...++.....|-++....+|+++.
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii 504 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII 504 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 23555556666678889999998887654211 11 11234445555566788888999999998
Q ss_pred HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH-HHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCC
Q 011362 337 ILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV-VTYSIMIGGLCN---DGQMDKARDLFLDMEENAVVP 412 (487)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~ 412 (487)
+..+ .++.........+..+.-++++.+++++-+..-..|+. ..|+..+..+.+ ...++.|..+|+++++ |.+|
T Consensus 505 dLri-aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 505 DLRI-ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HHhc-CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 7764 45555555555566777789999999987776445665 578887777654 3468999999999998 5666
Q ss_pred CHHH--HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHh-------cccccccccccccch
Q 011362 413 NVIT--FDMLIRGFIRINEPSKVIELLHKMKEINVMPDA--SIVSIVVDLLAK-------NEISLNSLPSFTVHE 476 (487)
Q Consensus 413 ~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~-------~g~~~~~~~~~~~~~ 476 (487)
...- |......--+.|-...|..+++++... +++.. ..|+.+|.-.+. .+.++++|+..|.+.
T Consensus 583 ~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~ 656 (835)
T KOG2047|consen 583 EHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSK 656 (835)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHH
Confidence 5432 222233333568888899999997643 34432 455655543221 233377777766543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-11 Score=116.97 Aligned_cols=271 Identities=14% Similarity=0.006 Sum_probs=187.9
Q ss_pred CCCHHHHHHHHHHH--H---ccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH-------HHhcCChhHHHHHH
Q 011362 55 EPDVFTYTTLVNGL--C---RTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG-------LCKEGFVDKAKELL 122 (487)
Q Consensus 55 ~~~~~~~~~l~~~~--~---~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~g~~~~a~~~~ 122 (487)
..+...|...+++. . ..+..++|+.+|++..+..+.+ +........+.. +...+++++|...+
T Consensus 253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~-----a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~ 327 (553)
T PRK12370 253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNS-----IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHA 327 (553)
T ss_pred CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHH
Confidence 44555454444432 1 1245679999999999988643 333322222111 12446789999999
Q ss_pred HHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 011362 123 LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRP 202 (487)
Q Consensus 123 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 202 (487)
++..+.+ +-+..++..+...+...|++++|...|+++.+.++. +...+..+...+...|++++|...++.+.+....
T Consensus 328 ~~Al~ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~- 404 (553)
T PRK12370 328 IKATELD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT- 404 (553)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 9999874 347788888999999999999999999999987533 5667888889999999999999999999987443
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV 282 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 282 (487)
+...+..++..+...|++++|...++++.....+.++..+..+..++...|++++|...+.++..... .+......+..
T Consensus 405 ~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~ 483 (553)
T PRK12370 405 RAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYA 483 (553)
T ss_pred ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHH
Confidence 33333444555677899999999999987664334566678888899999999999999998766522 23444555666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCC-CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 283 GLFEIHQVERAFKLFDEMQRNGV-AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
.+...| +++...++.+.+... .+.. .......+.-.|+.+.+..+ +++.+.+
T Consensus 484 ~~~~~g--~~a~~~l~~ll~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 484 EYCQNS--ERALPTIREFLESEQRIDNN--PGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred HHhccH--HHHHHHHHHHHHHhhHhhcC--chHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 667766 477777777655311 1111 12244445667777777666 7776543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.57 E-value=2e-10 Score=104.96 Aligned_cols=287 Identities=15% Similarity=0.113 Sum_probs=167.6
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-----cCChH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR-----TSHTI 75 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~g~~~ 75 (487)
.|++++|++.++..... +..........+..+.+.|++++|..+|..++..+ +.+..-|..+..+..- ..+.+
T Consensus 17 ~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~~~~ 94 (517)
T PF12569_consen 17 AGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDEDVE 94 (517)
T ss_pred CCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccccHH
Confidence 47777788777775554 33335555667777777888888888888877774 3333334444444311 12456
Q ss_pred HHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 011362 76 VALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV-DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAK 154 (487)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 154 (487)
...++++++.... |.......+.-.+..-..+ ..+...+..+...|+| .+|..|-..|.......-..
T Consensus 95 ~~~~~y~~l~~~y--------p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~ 163 (517)
T PF12569_consen 95 KLLELYDELAEKY--------PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIE 163 (517)
T ss_pred HHHHHHHHHHHhC--------ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHH
Confidence 6677777776654 2222222222112111122 2344455556666654 34555555555444444444
Q ss_pred HHHHHHHHc----C----------CCCCh--hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 155 RLFIEMMDQ----G----------VQPNV--VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 155 ~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
+++...... + -+|+. .++..+...|...|++++|+.+++..+++... .+..|..-.+.+-..|
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G 242 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG 242 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence 455444322 0 12233 23345566677788888888888877776322 3566777777777888
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhH--------HHHHHHHHhcCCH
Q 011362 219 RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIH--------NTLFVGLFEIHQV 290 (487)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------~~l~~~~~~~~~~ 290 (487)
++.+|.+.++.....+ ..|...-+..+..+.+.|+.++|.+++....+.+..|..... .....+|.+.|++
T Consensus 243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 8888888888777765 456666666777777888888888887777665543222111 2345667777777
Q ss_pred HHHHHHHHHHHH
Q 011362 291 ERAFKLFDEMQR 302 (487)
Q Consensus 291 ~~a~~~~~~~~~ 302 (487)
..|++.|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 777776665543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-13 Score=107.05 Aligned_cols=229 Identities=12% Similarity=0.003 Sum_probs=130.8
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011362 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVI 141 (487)
Q Consensus 62 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 141 (487)
..+..+|.+.|.+.+|.+.|+...+. .|.+++|..|-.+|.+..++..|+.++.+-.+. .+-++....-+.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--------~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~A 297 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhH
Confidence 45566666666666666666665553 355566666666666666666666666655544 232333334455
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHh
Q 011362 142 RGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 221 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (487)
+.+-..++.++|.++|+...+.. +.++.....+...|.-.++++-|+++++++++.|+. ++..|..+.-+|.-.+++|
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D 375 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQID 375 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchh
Confidence 56666666666666666665542 224444444445555566666666666666666655 5556666666666666666
Q ss_pred HHHHHHHHHHHcCCCC--CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011362 222 HAKELFVSMESMGCKH--TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDE 299 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 299 (487)
-++..|.+..+.--.| -...|..+.......||+..|.+.|+-.+.++.. ....++.+...-.+.|++++|..++..
T Consensus 376 ~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 376 LVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred hhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 6666665554432112 2334555555555666666666666666554333 444556665556666666666666665
Q ss_pred HHH
Q 011362 300 MQR 302 (487)
Q Consensus 300 ~~~ 302 (487)
...
T Consensus 455 A~s 457 (478)
T KOG1129|consen 455 AKS 457 (478)
T ss_pred hhh
Confidence 554
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-10 Score=103.24 Aligned_cols=412 Identities=13% Similarity=0.036 Sum_probs=261.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 18 CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
.+..+..+|..+.-++...|++..+.+.|++....- -.....|..+...+...|....|..+++......+ -++
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~-----~ps 391 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSE-----QPS 391 (799)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhccccc-----CCC
Confidence 355789999999999999999999999999987542 34556788899999999999999999988766542 133
Q ss_pred chHHHHHHHHHHHh-cCChhHHHHHHHHHHhC--C--CCCCHhhHHHHHHHHHhc-----------CChhhHHHHHHHHH
Q 011362 98 NTVTYTTIIDGLCK-EGFVDKAKELLLQMKDK--N--IKPNVVTYTSVIRGFCYA-----------KDWNEAKRLFIEMM 161 (487)
Q Consensus 98 ~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~--~--~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~ 161 (487)
++..+-..-..|.+ .+..++++++-.++... + -......|..+.-+|... ....++++.+++..
T Consensus 392 ~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av 471 (799)
T KOG4162|consen 392 DISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAV 471 (799)
T ss_pred cchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHH
Confidence 44455444444443 46677777766666551 1 112344555555555422 22467888888887
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
+.+.. |+.....+.--|+..++.+.|.+..++..+-+...+...|..+.-.+...+++.+|+.+.+.....- +.|...
T Consensus 472 ~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l 549 (799)
T KOG4162|consen 472 QFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVL 549 (799)
T ss_pred hcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhh
Confidence 76543 3444444555778889999999999999988666788999999999999999999999998876531 122222
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHC-----CC-----------------------ccChhhHHHHHHHHHhcCCHHHH
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSK-----GI-----------------------KPDVVIHNTLFVGLFEIHQVERA 293 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-----------------------~~~~~~~~~l~~~~~~~~~~~~a 293 (487)
...-+..-...++.++++.....+... ++ .-...++..+...... +...+
T Consensus 550 ~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~ 627 (799)
T KOG4162|consen 550 MDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSA 627 (799)
T ss_pred chhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhc
Confidence 222233333466777776665554431 00 0001111111111100 00000
Q ss_pred HHHHHHHHHcCCC--Cc------HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 011362 294 FKLFDEMQRNGVA--AD------TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALE 365 (487)
Q Consensus 294 ~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 365 (487)
..-. .+...... |+ ...+......+.+.+..++|...+.+..... +..+..|......+...|..++|.+
T Consensus 628 ~se~-~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~ 705 (799)
T KOG4162|consen 628 GSEL-KLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKE 705 (799)
T ss_pred cccc-ccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHH
Confidence 0000 00000011 11 1233344556667777777777777776543 5566667777777777888888888
Q ss_pred HHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 366 LFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARD--LFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
.|......+ +.++....++..++.+.|+..-|.. ++..+.+.+.. +...|..+...+.+.|+.+.|.+.|.-..+.
T Consensus 706 af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 706 AFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred HHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 887776643 3345677778888888887766666 78888776533 6778888888888888888888888777653
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.9e-10 Score=98.91 Aligned_cols=137 Identities=15% Similarity=0.072 Sum_probs=82.7
Q ss_pred CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHH--------hccCCCCCCcHHHHHHHHHHHHccCCH
Q 011362 324 YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFR--------SLPCGVLVPNVVTYSIMIGGLCNDGQM 395 (487)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (487)
.+..+..++...-+........+.-..+......|+++.|.+++. .+.+.+..| .+...+...+.+.++.
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCC
Confidence 466666666666554322234455556666777888888888887 444443333 3444555566666666
Q ss_pred HHHHHHHHHHHhC--CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 396 DKARDLFLDMEEN--AVVPN----VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 396 ~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
+.|..++.+.+.. .-.+. ..++..++..-.+.|+.++|..+++++.+.+ ++|..+...++.+|++..
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~d 506 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARLD 506 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhcC
Confidence 6666666665432 00111 2233344444456788888888888888765 677777777777777644
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.4e-12 Score=105.90 Aligned_cols=197 Identities=14% Similarity=0.100 Sum_probs=92.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
.+..+...+...|++++|.+.++++.+.. |.+...+..+...+...|++++|.+.+++..+.. +.+...+..
T Consensus 33 ~~~~la~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~ 104 (234)
T TIGR02521 33 IRVQLALGYLEQGDLEVAKENLDKALEHD-------PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNN 104 (234)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence 34444444444555555555555444432 2334444444444555555555555554444432 123334444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 140 VIRGFCYAKDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 140 l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
+...+...|++++|.+.+++....... .....+..+..++...|++++|...++....... .+...+..+...+...|
T Consensus 105 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~ 183 (234)
T TIGR02521 105 YGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRG 183 (234)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcC
Confidence 444445555555555555554432111 1122333444455555555555555555544321 13344445555555555
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 219 RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
++++|...+++..... +.+...+..++..+...|+.+.|..+.+.+.
T Consensus 184 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 184 QYKDARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5555555555554441 3334444445555555555555555554443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.4e-09 Score=93.45 Aligned_cols=443 Identities=14% Similarity=0.136 Sum_probs=278.3
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHccCChH--
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFG------CEPDVFTYTTLVNGLCRTSHTI-- 75 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~-- 75 (487)
.+-++.+|++-++.. +..-+-.+..+...+++++|.+.+...+... .+.+...|..+.....+.-+.-
T Consensus 154 Pets~rvyrRYLk~~----P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~s 229 (835)
T KOG2047|consen 154 PETSIRVYRRYLKVA----PEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQS 229 (835)
T ss_pred hHHHHHHHHHHHhcC----HHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcc
Confidence 456888999998863 3335667888899999999999998876541 2445556766666665554332
Q ss_pred -HHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC------
Q 011362 76 -VALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK------ 148 (487)
Q Consensus 76 -~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 148 (487)
....+++.+..+- ...-...|+.|...|.+.|.+++|.++|++..+.- .++.-|..+...|+.-.
T Consensus 230 lnvdaiiR~gi~rf------tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~ 301 (835)
T KOG2047|consen 230 LNVDAIIRGGIRRF------TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAA 301 (835)
T ss_pred cCHHHHHHhhcccC------cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHH
Confidence 2344555555443 12224678999999999999999999999987752 24444555555544211
Q ss_pred ----------------ChhhHHHHHHHHHHcCC-----------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 011362 149 ----------------DWNEAKRLFIEMMDQGV-----------QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 149 ----------------~~~~a~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
+++-....|+.++.... +.+...|..-+ -...|+..+....+.++.+. +.
T Consensus 302 ~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--~l~e~~~~~~i~tyteAv~~-vd 378 (835)
T KOG2047|consen 302 KMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--KLYEGNAAEQINTYTEAVKT-VD 378 (835)
T ss_pred HHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--hhhcCChHHHHHHHHHHHHc-cC
Confidence 12233334444443311 11222222222 22356677777888877764 22
Q ss_pred C------CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc-
Q 011362 202 P------DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT---VFSYSILINGYCKNKEIEGALSLYSEMLSKGIK- 271 (487)
Q Consensus 202 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 271 (487)
| -...|..+...|-..|+.+.|..+|++......+.- ..+|.....+=.+..+++.|+++++......-.
T Consensus 379 P~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~ 458 (835)
T KOG2047|consen 379 PKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNP 458 (835)
T ss_pred cccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCch
Confidence 2 235688889999999999999999999987654332 344555566667788999999998877543111
Q ss_pred ----------------cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHH
Q 011362 272 ----------------PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTL 335 (487)
Q Consensus 272 ----------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 335 (487)
.+...|..++..-...|-++....+++++.+..+. ++.........+.....++++.++|++-
T Consensus 459 ~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 459 ELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred hhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 12345566666666788899999999999887543 4444444444556677789999999886
Q ss_pred HHcCCCCCh-HhHHHHHHHHHh---cCCHHHHHHHHHhccCCCCCCcHHHHHHHH--HHHHccCCHHHHHHHHHHHHhCC
Q 011362 336 RILKCEFDI-RAYNSLIDGLCK---SGRLEIALELFRSLPCGVLVPNVVTYSIMI--GGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 336 ~~~~~~~~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
+..-..|++ ..|+..+.-+.+ ...++.|..+|++.++ +++|...-+-.++ ..--..|-...|+.+++++...
T Consensus 538 I~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~- 615 (835)
T KOG2047|consen 538 ISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA- 615 (835)
T ss_pred CccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-
Confidence 654334443 456766665543 3468999999999998 5566543222222 2223457788888898887654
Q ss_pred CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHH---HHHHhccccc
Q 011362 410 VVPN--VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVV---DLLAKNEISL 466 (487)
Q Consensus 410 ~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~ 466 (487)
+++. ...|+.+|.-....=.+.....+|+++.+. -|+...-...+ +.=++.|...
T Consensus 616 v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrFAdlEtklGEid 675 (835)
T KOG2047|consen 616 VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRFADLETKLGEID 675 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHHHHHhhhhhhHH
Confidence 3333 245666665444443455566777777763 45554444433 2334455543
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.7e-12 Score=105.73 Aligned_cols=231 Identities=13% Similarity=0.031 Sum_probs=190.8
Q ss_pred HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHh
Q 011362 207 YNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFE 286 (487)
Q Consensus 207 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 286 (487)
-+.+.++|.+.|.+.+|.+.++...+. .|.+.+|..|-..|.+..+++.|+.++.+.++. ++.++.......+.+..
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 356788999999999999999888776 567778899999999999999999999988876 44466666677788888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 011362 287 IHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALEL 366 (487)
Q Consensus 287 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (487)
.++.++|.++++...+.. +.+.+....+...|.-.++++-|+.+|+++...| -.++..|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999988874 5567777778888888899999999999999988 56888899999899999999999988
Q ss_pred HHhccCCCCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 367 FRSLPCGVLVPN--VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 367 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
|++....-..|+ ..+|..+.......|++.-|.+.|+-....+.. +...++.|.-.-.+.|++++|..+++.+...
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 888765433344 467888888888899999999999988876432 5678888888888999999999999888763
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.3e-09 Score=99.34 Aligned_cols=125 Identities=16% Similarity=0.085 Sum_probs=101.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP-NVITFDMLIRGFI 425 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 425 (487)
|......+.+.+..++|...+.+..... +-....|......+...|...+|...|...... .| ++.+..++...+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHH
Confidence 4455667778888899988888777642 445667777778888999999999999999875 34 4678889999999
Q ss_pred hcCChhHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 011362 426 RINEPSKVIE--LLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 475 (487)
Q Consensus 426 ~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 475 (487)
+.|+..-|.. ++..+++.+ +.++..|..+...+.+.|+..++.+.|.-.
T Consensus 730 e~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9998888877 999999977 667899999999999999997777666443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-09 Score=92.76 Aligned_cols=270 Identities=14% Similarity=0.025 Sum_probs=168.1
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHH
Q 011362 166 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSIL 245 (487)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 245 (487)
+-+......+..++...|+..+|+..|+.....+.- +........-.+.+.|+.++...+...+.... +.+...|..-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 334555566666667777777777777666544211 22222333334455666666666655555432 2233334444
Q ss_pred HHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCH
Q 011362 246 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYI 325 (487)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 325 (487)
+......++++.|+.+-++.+..+.. +...+..-...+...+++++|.-.|+...... +.+..+|..++.+|...|.+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 44445566777777777666664332 44445445556667777777777777766542 34566777777777777777
Q ss_pred hHHHHHHHHHHHcCCCCChHhHHHHH-HHHH-hcCCHHHHHHHHHhccCCCCCCcH-HHHHHHHHHHHccCCHHHHHHHH
Q 011362 326 VEAVELFHTLRILKCEFDIRAYNSLI-DGLC-KSGRLEIALELFRSLPCGVLVPNV-VTYSIMIGGLCNDGQMDKARDLF 402 (487)
Q Consensus 326 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~ 402 (487)
.+|...-+...+. ++.+..++..+. ..+. ...--++|.+++++.... .|+. ...+.+...+...|+.+.++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 7777666655543 244555554442 2222 222346777777776664 4543 45667777788888888888888
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 403 LDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
++... ..||....+.|...+...+.+++|.+.|..++..+
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88877 35788888888888888888888988888888754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-11 Score=101.38 Aligned_cols=199 Identities=15% Similarity=0.074 Sum_probs=97.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~ 102 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-------PNNGDVL 102 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCCHHHH
Confidence 3344455555555555555555555555442 2334444455555555555555555555555443 3334445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
..+...+...|++++|.+.+++...... +.....+..+..++...|++++|...+.+....... +...+..+...+..
T Consensus 103 ~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~ 181 (234)
T TIGR02521 103 NNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYL 181 (234)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHH
Confidence 5555555555555555555555544211 112234444455555555555555555555443211 23344445555555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
.|++++|...+++.... .+.+...+..+...+...|+.+.|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 55555555555555444 22233444444455555555555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-08 Score=85.62 Aligned_cols=270 Identities=12% Similarity=0.051 Sum_probs=186.6
Q ss_pred CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011362 130 IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYN 208 (487)
Q Consensus 130 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 208 (487)
++-|+.....+..++...|+..+|+..|++.... .|+ ........-.+...|+.++...+...+.... .-+...|.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf 304 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF 304 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence 4557777788888888888888888888887654 222 2223333445567788888777777766542 12334444
Q ss_pred HHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcC
Q 011362 209 TLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIH 288 (487)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (487)
.-+......+++..|+.+-++..+.+ +.+...+-.-...+...++++.|.-.|+......+ .+...|..++.+|...|
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~ 382 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQK 382 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhc
Confidence 44555566777888888888877665 44555666666777788888888888888776532 36678888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHhHHHHH-HHHH-hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 011362 289 QVERAFKLFDEMQRNGVAADTWTYRTFI-DGLC-KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALEL 366 (487)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (487)
.+.+|...-+...+. .+.+..++..+. ..+. ...--++|..++++..... |.-....+.+...+...|..+.++.+
T Consensus 383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~-P~Y~~AV~~~AEL~~~Eg~~~D~i~L 460 (564)
T KOG1174|consen 383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN-PIYTPAVNLIAELCQVEGPTKDIIKL 460 (564)
T ss_pred hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC-CccHHHHHHHHHHHHhhCccchHHHH
Confidence 888888777666554 344555555553 2222 2233567888888777653 33345667777778888888888888
Q ss_pred HHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 367 FRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
++..... .||....+.|...+...+.+++|+..|..+...
T Consensus 461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 8877764 677778888888888888888888888888774
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.4e-10 Score=102.74 Aligned_cols=294 Identities=16% Similarity=0.120 Sum_probs=213.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
....+...|++++|++.++.-... +.............+.+.|+.++|..++..+.+.+ |.+..-|..+..+
T Consensus 10 ~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-------Pdn~~Yy~~L~~~ 81 (517)
T PF12569_consen 10 KNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-------PDNYDYYRGLEEA 81 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHH
Confidence 345678999999999999886544 33444556688899999999999999999999987 6677777777777
Q ss_pred HHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh-hHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 109 LCKE-----GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWN-EAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 109 ~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
.... .+.+...++|+++...- |.......+.-.+.....|. .+..++..+...|++ .+|..+-..|...
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~ 156 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP 156 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence 6333 25677888999887652 44444444433333333443 344566666777765 3566666666655
Q ss_pred CChHHHHHHHHHHHHC----C----------CCCCH--HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 011362 183 GKMDEASRLLDLMIQH----G----------VRPDA--FTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILI 246 (487)
Q Consensus 183 ~~~~~a~~~~~~~~~~----~----------~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 246 (487)
.+..-..+++...... + -+|+. .++..+...|...|++++|++++++..++. |..+..|..-.
T Consensus 157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~Ka 235 (517)
T PF12569_consen 157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKA 235 (517)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 5555555555554432 1 12343 355667888999999999999999999885 44578888999
Q ss_pred HHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--------HhHHHHHHH
Q 011362 247 NGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT--------WTYRTFIDG 318 (487)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~ 318 (487)
+.+-..|++++|.+.++.....+.. |...-+..+..+.+.|+.++|..++....+.+..|.. +.......+
T Consensus 236 rilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a 314 (517)
T PF12569_consen 236 RILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEA 314 (517)
T ss_pred HHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987655 6667777888889999999999999988776543322 223455678
Q ss_pred HHhCCCHhHHHHHHHHHHH
Q 011362 319 LCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 319 ~~~~~~~~~a~~~~~~~~~ 337 (487)
|.+.|++..|+..|..+.+
T Consensus 315 ~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 315 YLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 9999999999887777653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-10 Score=89.81 Aligned_cols=199 Identities=12% Similarity=0.003 Sum_probs=142.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
+...|.-.|...|++..|..-++++++.. +.+..+|..+...|.+.|+.+.|.+.|++..+.. |.+..+.|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-------p~~GdVLNN 108 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-------PNNGDVLNN 108 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-------CCccchhhh
Confidence 45556667778888888888888887764 4455677777777888888888888888887765 566777778
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKN-IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 183 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (487)
....+|..|++++|...|++....- ..-...+|..+.-+..+.|+++.|...|++..+.... ...+...+.+...+.|
T Consensus 109 YG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~ 187 (250)
T COG3063 109 YGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAG 187 (250)
T ss_pred hhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcc
Confidence 8888888888888888887776541 2223456777777777888888888888887776433 3445666777777788
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 184 KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 184 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
++..|..+++.....+. ++....-..|+.-.+.|+.+.+.+.=..+...
T Consensus 188 ~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 188 DYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred cchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88888877777776654 67777777777777777777776665555543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.1e-10 Score=99.35 Aligned_cols=220 Identities=11% Similarity=0.049 Sum_probs=118.7
Q ss_pred cCCHHHHHHHHHHHHhcCC-CC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 36 ESRIMEAAALFTKLRVFGC-EP--DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
.+..+.++.-+.+++.... .| ....|..+...+...|+.++|...|++..+.. |.+...|+.+...+...
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-------P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-------PDMADAYNYLGIYLTQA 111 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHC
Confidence 3455566666666654321 11 12345566666667777777777777766654 45566677777777777
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 192 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 192 (487)
|+++.|.+.|++..+.. +-+..+|..+..++...|++++|.+.|+...+.. |+..........+...+++++|...|
T Consensus 112 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 112 GNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 77777777777766542 2245566666666666777777777777666543 22211122222233455667777776
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc---CC---CCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 193 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM---GC---KHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
....... .++...+ .+. ....|+...+ ..+..+.+. .. +.....|..+...+.+.|++++|...|++..
T Consensus 189 ~~~~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5544321 2222111 112 2223333332 233333211 00 1223466777777777777777777777777
Q ss_pred HCCC
Q 011362 267 SKGI 270 (487)
Q Consensus 267 ~~~~ 270 (487)
..++
T Consensus 264 ~~~~ 267 (296)
T PRK11189 264 ANNV 267 (296)
T ss_pred HhCC
Confidence 6543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=105.03 Aligned_cols=244 Identities=19% Similarity=0.169 Sum_probs=167.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCHHH-HHHHHHHHHccCChHHHHHHHHHHHhCCC-CCccc
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVF-----G-CEPDVFT-YTTLVNGLCRTSHTIVALNLFEEMANGNG-EFGVV 94 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ 94 (487)
..+...+...|...|+++.|..++++.++. | ..|...+ .+.+...|...+++.+|..+|+++..... .+|..
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 555666999999999999999999998876 1 1344443 34578899999999999999998876431 12222
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CCCH-hhHHHHHHHHHhcCChhhHHHHHHHHHHc---C
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-----NI-KPNV-VTYTSVIRGFCYAKDWNEAKRLFIEMMDQ---G 164 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~ 164 (487)
.+.-..+++.|...|.+.|++++|...++...+. |. .|.+ ..++.++..+...+++++|..++....+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 3344567888889999999999988888776532 11 1222 23566777788888999988888876542 1
Q ss_pred CCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC----C---CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 165 VQP----NVVTFNVIMDELCKNGKMDEASRLLDLMIQHG----V---RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 165 ~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
+.+ -..+++.+...|...|++++|.++++.++... . .-....++.+...|.+.+.+.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 111 23467778888888888888888887776531 1 112345666777777777777777777665332
Q ss_pred ------CCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 234 ------GCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 234 ------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
+.+....+|..|...|.+.|+++.|.++...+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 122334567777777777777777777766655
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-09 Score=92.41 Aligned_cols=390 Identities=16% Similarity=0.130 Sum_probs=245.4
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|+++.|+..|-..+..++ +|-..|..-..+|...|++++|++=-.+-.+. .|+ +..|.....++...|++++|+.
T Consensus 15 ~~d~~~ai~~~t~ai~l~p-~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 15 SGDFETAIRLFTEAIMLSP-TNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred cccHHHHHHHHHHHHccCC-CccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHHHHHH
Confidence 4899999999999999974 48888888899999999999999877777765 444 4579999999999999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHH---HHHHHHHHhC---CCCCCHhhHHHHHHHHHhc------
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKA---KELLLQMKDK---NIKPNVVTYTSVIRGFCYA------ 147 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a---~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~------ 147 (487)
.|.+-++.. +.+...+..+..++......... -.++..+... ........|..++..+-+.
T Consensus 92 ay~~GL~~d-------~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 92 AYSEGLEKD-------PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHhhcC-------CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 999999876 67778888888877221000000 0011111100 0000111222222221110
Q ss_pred ----CChhhHHHHHHHH-----HHcC-------CCC----------------------ChhhHHHHHHHHHhCCChHHHH
Q 011362 148 ----KDWNEAKRLFIEM-----MDQG-------VQP----------------------NVVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 148 ----~~~~~a~~~~~~~-----~~~~-------~~~----------------------~~~~~~~l~~~~~~~~~~~~a~ 189 (487)
..+.++.-.+... ...+ ..| -..-...+.++..+..++..++
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 1111121111100 0000 111 0112345778888888999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhH-------HHHHHHHHccCCHhHHHHHH
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY-------SILINGYCKNKEIEGALSLY 262 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~ 262 (487)
+.+....... -+..-++....++...|.+......-....+.|. .....| ..+..+|.+.++++.++..|
T Consensus 245 q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~ 321 (539)
T KOG0548|consen 245 QHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYY 321 (539)
T ss_pred HHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence 9999888764 3566667777788888888777776666655542 122222 23444667778899999999
Q ss_pred HHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC
Q 011362 263 SEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD-TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCE 341 (487)
Q Consensus 263 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 341 (487)
.+.+.....|+. ..+....+++........-. .|. ..-...-...+.+.|++..|+..|.++++.. |
T Consensus 322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P 389 (539)
T KOG0548|consen 322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-P 389 (539)
T ss_pred HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-C
Confidence 987765433332 22333344554444433332 222 1222333566777888888888888888776 6
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011362 342 FDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFD 418 (487)
Q Consensus 342 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 418 (487)
.|...|....-+|.+.|.+..|+.-.+..++.+ ++....|..-+.++....+++.|.+.|++.++.. |+..-+.
T Consensus 390 ~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~ 463 (539)
T KOG0548|consen 390 EDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAI 463 (539)
T ss_pred chhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHH
Confidence 777888888888888888888888777777653 4445566666667777778888888888887753 4444333
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.4e-10 Score=103.08 Aligned_cols=243 Identities=20% Similarity=0.175 Sum_probs=126.4
Q ss_pred HhhHHHHHHHHHhcCChhhHHHHHHHHHHc-----CC-CCChhh-HHHHHHHHHhCCChHHHHHHHHHHHHC-----CC-
Q 011362 134 VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ-----GV-QPNVVT-FNVIMDELCKNGKMDEASRLLDLMIQH-----GV- 200 (487)
Q Consensus 134 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~- 200 (487)
..+...+...|...|++++|+.+++..++. |. .|...+ .+.+...|...+++.+|..+|+.+... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 345555777777777777777777766553 10 112111 122444555555555555555555432 10
Q ss_pred -CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC-CccCh-hhH
Q 011362 201 -RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPDV-VIH 277 (487)
Q Consensus 201 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-~~~ 277 (487)
+.-..+++.|..+|.+.|++++|...++...+. +++ ..+ ..|.+ ..+
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~--~~~~~~~~v~~~l 328 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEK--LLGASHPEVAAQL 328 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHH--hhccChHHHHHHH
Confidence 111234444455555555555555544443221 000 000 01111 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC----cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC----C---CCC
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRN---GVAA----DTWTYRTFIDGLCKNGYIVEAVELFHTLRILK----C---EFD 343 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~---~~~ 343 (487)
..+...+...+++++|..++....+. -+.+ -..++..+...|...|++++|.+++++++... . .-.
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~ 408 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGV 408 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhh
Confidence 33444455555555555555443221 0111 13566777777777777777777777665321 1 122
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhccC----CC-CCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 344 IRAYNSLIDGLCKSGRLEIALELFRSLPC----GV-LVPN-VVTYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
...++.+...|.+.+++.+|.++|.+... .| -.|+ ..+|..|..+|...|+++.|.++.+...
T Consensus 409 ~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 409 GKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34566777777777777777776665432 11 1223 3577778888888888888888777665
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.4e-10 Score=105.53 Aligned_cols=251 Identities=15% Similarity=0.195 Sum_probs=140.7
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
++-.+...| +.|+..+|..+|.-|+..|+.+.|- +|..|.-...+.+...|+.++.+....++.+.+.
T Consensus 12 fla~~e~~g------i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----- 79 (1088)
T KOG4318|consen 12 FLALHEISG------ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----- 79 (1088)
T ss_pred HHHHHHHhc------CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----
Confidence 444555555 6888999999999999999999888 8888888777778889999999988888888776
Q ss_pred HHHcCCCCChhhHHHHHHHHHhCCChHH---HHHHHHHHH----HCCCCCCHHHHHH---------------HHHHHHcC
Q 011362 160 MMDQGVQPNVVTFNVIMDELCKNGKMDE---ASRLLDLMI----QHGVRPDAFTYNT---------------LLDGFCLT 217 (487)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~----~~~~~~~~~~~~~---------------l~~~~~~~ 217 (487)
.|.+.+|..|..+|...||... +.+.+..+. ..|+. ....+.. .+......
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~e 152 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLE 152 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHH
Confidence 5788899999999999998654 222222221 11211 1111111 11111222
Q ss_pred CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-cCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 011362 218 GRVNHAKELFVSMESMGCKHTVFSYSILINGYCK-NKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKL 296 (487)
Q Consensus 218 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (487)
|-++.+++++..+..... ..+... +++-+.. ...+++-........+ .|++.++..++......|+.+.|..+
T Consensus 153 glwaqllkll~~~Pvsa~-~~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~l 226 (1088)
T KOG4318|consen 153 GLWAQLLKLLAKVPVSAW-NAPFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNL 226 (1088)
T ss_pred HHHHHHHHHHhhCCcccc-cchHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHH
Confidence 233333333322211100 000000 1222111 1122222222222222 35556666666666666666666666
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC
Q 011362 297 FDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG 358 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 358 (487)
+..|.+.|.+.+.+-|..++-+ .++...+..+++-|...|+.|+..|+...+..+...|
T Consensus 227 l~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~ 285 (1088)
T KOG4318|consen 227 LYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNG 285 (1088)
T ss_pred HHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcch
Confidence 6666666665555544444433 5555555666666666666666666655555554433
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-09 Score=86.08 Aligned_cols=326 Identities=15% Similarity=0.120 Sum_probs=200.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH-
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT- 104 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 104 (487)
+.+.+..+.+..++.+|++++..-.++. +.+......+..+|....++..|-..++++.... |...-|..
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--------P~~~qYrlY 83 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--------PELEQYRLY 83 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------hHHHHHHHH
Confidence 5666777778888999999888877764 3366677788888888889999999999888753 44444433
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHh--hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVV--TYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
-...+.+.+.+..|+.+...|... |+.. ....-.....+.+++..+..+.++....| +..+.+...-...+.
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyke 157 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKE 157 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeecc
Confidence 356777888888888888877653 2221 11111222346778888888887765332 444445555556788
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH-----------------------
Q 011362 183 GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV----------------------- 239 (487)
Q Consensus 183 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------------- 239 (487)
|+++.|.+-|+...+-+--.....|+.. -+..+.|+++.|++...++.+.|+...+
T Consensus 158 gqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh 236 (459)
T KOG4340|consen 158 GQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLH 236 (459)
T ss_pred ccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHH
Confidence 8899999888887775433344555543 4556778888888888888776543211
Q ss_pred -----hhHHHHHHHHHccCCHhHHHHHHHHHHHC-CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHH
Q 011362 240 -----FSYSILINGYCKNKEIEGALSLYSEMLSK-GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYR 313 (487)
Q Consensus 240 -----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 313 (487)
..++.-...+.+.++++.|.+.+..|..+ ....|+.|...+.-.- ..+++.....-+.-+...+. -...|+.
T Consensus 237 ~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFA 314 (459)
T KOG4340|consen 237 QSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFA 314 (459)
T ss_pred HHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHH
Confidence 11233333456778888888887777543 2234555554443221 23334444444555555433 3456788
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCC-CChHhHHHHHHHHH-hcCCHHHHHHHHHhc
Q 011362 314 TFIDGLCKNGYIVEAVELFHTLRILKCE-FDIRAYNSLIDGLC-KSGRLEIALELFRSL 370 (487)
Q Consensus 314 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 370 (487)
.++-.||+..-++-|-.++.+-...... .+...|+ |+.++. ..-.+++|.+-+..+
T Consensus 315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 8888888888888887777553221111 1223333 333332 344566666555443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-09 Score=99.98 Aligned_cols=274 Identities=18% Similarity=0.181 Sum_probs=173.1
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011362 10 VLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
++..+...|+.|+.++|.++|.-|+..|+.+.|- +|.-|.....+.+...++.++.+....++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455566667777777777777777777777666 6666666655556666666666666666655443
Q ss_pred CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH-HcCCCCC
Q 011362 90 EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM-DQGVQPN 168 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~~ 168 (487)
.|.+++|..|..+|.+.||+.. |+...+ -...+...+...|.-.....++..+. ..+.-||
T Consensus 80 ------ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd 141 (1088)
T KOG4318|consen 80 ------EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPD 141 (1088)
T ss_pred ------CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchh
Confidence 2456677777777777777655 222221 11223333444444444444443321 1122333
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILING 248 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (487)
.. ..+......|-++.+++++..+...... . .+..+++-+..... -..++.....+..-.+++.+|..++.+
T Consensus 142 a~---n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~ 213 (1088)
T KOG4318|consen 142 AE---NAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKR 213 (1088)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHH
Confidence 33 2344445566667777766554322111 1 11112444443332 223333333332225899999999999
Q ss_pred HHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCC
Q 011362 249 YCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGY 324 (487)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 324 (487)
-...|+.+.|..++.+|.+.|++.+..-|..++-+ .++...+..++.-|.+.|+.|+..|+...+..+...|.
T Consensus 214 alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 214 ALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred HHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 99999999999999999999999888877777655 78888899999999999999999999998888877655
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-09 Score=92.62 Aligned_cols=222 Identities=13% Similarity=-0.026 Sum_probs=148.2
Q ss_pred cCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 71 TSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
.+..+.++.-+.++....+.. .+.....|..+...+...|+.+.|...|++..+.. +.+...|+.+...+...|++
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~---~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~ 114 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLT---DEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF 114 (296)
T ss_pred chHHHHHHHHHHHHHccccCC---cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence 346677777777777643100 11224567788888888999999999998888764 34678888889999999999
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
++|...|++..+..+. +...+..+..++...|++++|.+.++...+.. |+..........+...++.++|...+.+.
T Consensus 115 ~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 115 DAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 9999999998876433 45667778888888899999999998888763 33222222233345667888998888665
Q ss_pred HHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC---CC--c-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011362 231 ESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK---GI--K-PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG 304 (487)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (487)
.... +++...+ .+. ....|+...+ ..+..+... .+ . .....|..+...+...|++++|...|++..+.+
T Consensus 192 ~~~~-~~~~~~~-~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 192 YEKL-DKEQWGW-NIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HhhC-CccccHH-HHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 5332 2332222 222 2334555443 244444321 11 1 123578888888889999999999999888865
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-09 Score=82.35 Aligned_cols=196 Identities=12% Similarity=0.015 Sum_probs=105.7
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhC
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKN 322 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (487)
..+.-.|...|++..|..-+++.++.++. +..++..+...|.+.|+.+.|.+.|++..+.. +-+..+.+.....+|..
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~q 116 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQ 116 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhC
Confidence 34444555555555555555555554322 34455555555555555555555555555542 23344555555555666
Q ss_pred CCHhHHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 323 GYIVEAVELFHTLRILK-CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 323 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
|++++|...|+...... ......+|..+..+..+.|+++.|...|++.++.. +....+...+.......|++-.|..+
T Consensus 117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHH
Confidence 66666666665555321 11223455555555556666666666666655542 22334455555566666666666666
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 402 FLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
++.....+. ++..++...|+.-.+.|+.+.+.+.=.++..
T Consensus 196 ~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 196 LERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 666655543 5555555555655666666555554444443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-07 Score=83.80 Aligned_cols=406 Identities=12% Similarity=0.041 Sum_probs=264.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
..+.+..|+++.|+..|.+.+... +++...|..-..+|+..|++++|++=-.+..+.. |.-+..|.....++
T Consensus 9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-------p~w~kgy~r~Gaa~ 80 (539)
T KOG0548|consen 9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-------PDWAKGYSRKGAAL 80 (539)
T ss_pred HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-------CchhhHHHHhHHHH
Confidence 456678999999999999999886 5588888889999999999999999888887765 45578999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHH---HHHHHHHHc---CCCCChhhHHHHHHHH----
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAK---RLFIEMMDQ---GVQPNVVTFNVIMDEL---- 179 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~---~~~~~~~~~---~~~~~~~~~~~l~~~~---- 179 (487)
.-.|++++|+..|.+-++.. +.+...+..+..++.......+.. .++..+... ........|..++..+
T Consensus 81 ~~lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p 159 (539)
T KOG0548|consen 81 FGLGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNP 159 (539)
T ss_pred HhcccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCc
Confidence 99999999999999988763 335556666766662110000000 001110000 0000011122222111
Q ss_pred ------HhCCChHHHHHHHHHH-----HHC-------CCCC------------C----------HHHHHHHHHHHHcCCC
Q 011362 180 ------CKNGKMDEASRLLDLM-----IQH-------GVRP------------D----------AFTYNTLLDGFCLTGR 219 (487)
Q Consensus 180 ------~~~~~~~~a~~~~~~~-----~~~-------~~~~------------~----------~~~~~~l~~~~~~~~~ 219 (487)
..-..+..+...+... ... +..| | ..-...+..+..+..+
T Consensus 160 ~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~ 239 (539)
T KOG0548|consen 160 TSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKD 239 (539)
T ss_pred HhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 1101111111111100 000 0011 0 1124567888889999
Q ss_pred HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc--C----hhhHHHHHHHHHhcCCHHHH
Q 011362 220 VNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP--D----VVIHNTLFVGLFEIHQVERA 293 (487)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~l~~~~~~~~~~~~a 293 (487)
+..|.+.+....... .+..-++....+|...|.+..+........+.|... + ...+..+..++.+.++++.+
T Consensus 240 f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~a 317 (539)
T KOG0548|consen 240 FETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGA 317 (539)
T ss_pred HHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHH
Confidence 999999999988775 456667778888999998888887777766654321 1 11222234466677889999
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 294 FKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
...|.+.+.....|+. ..+....+++........-.+... ..-.-.-...+.+.|++..|...|.+++..
T Consensus 318 i~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 318 IKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 9999987765444433 233444555555555544333222 111222256678999999999999999987
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHH
Q 011362 374 VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA-SIV 452 (487)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~ 452 (487)
. +.|...|..-.-+|.+.|.+..|+.-.+..++.. ++....|..=..++....+++.|.+.|.+.++.+ |+. ...
T Consensus 388 ~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p~~~e~~ 463 (539)
T KOG0548|consen 388 D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--PSNAEAI 463 (539)
T ss_pred C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--chhHHHH
Confidence 5 6678899999999999999999999999888863 2234556666667778889999999999999865 544 444
Q ss_pred HHHHHHHH
Q 011362 453 SIVVDLLA 460 (487)
Q Consensus 453 ~~l~~~~~ 460 (487)
..+.++..
T Consensus 464 ~~~~rc~~ 471 (539)
T KOG0548|consen 464 DGYRRCVE 471 (539)
T ss_pred HHHHHHHH
Confidence 44444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-08 Score=89.44 Aligned_cols=306 Identities=10% Similarity=-0.011 Sum_probs=161.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC-EPDV-FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
...|..+...+...|+.+.+...+.+..+... .++. .........+...|++++|.+.++++.+.. |.+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~ 78 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-------PRDLL 78 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------CCcHH
Confidence 45566666666677777776666666554421 1121 122223344566777888888777777654 44444
Q ss_pred HHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 101 TYTTIIDGLC----KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 101 ~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
.+.. ...+. ..+..+.+.+.++... ...+........+...+...|++++|...+++..+..+. +...+..+.
T Consensus 79 a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la 155 (355)
T cd05804 79 ALKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVA 155 (355)
T ss_pred HHHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHH
Confidence 4442 22222 2344444555444311 111222334445556677777888888888877775422 455566677
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-CCCHhhH-H--HHHHHH
Q 011362 177 DELCKNGKMDEASRLLDLMIQHGV-RPDA--FTYNTLLDGFCLTGRVNHAKELFVSMESMGC-KHTVFSY-S--ILINGY 249 (487)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~ 249 (487)
..+...|++++|...++....... .++. ..+..+...+...|++++|..++++...... .+..... . .++..+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 777778888888887777665422 1222 2344566777777888888888777653321 1111111 1 223333
Q ss_pred HccCCHhHHHHH--HHHHHHCCCc--cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------C--cHHhHHHHHH
Q 011362 250 CKNKEIEGALSL--YSEMLSKGIK--PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA------A--DTWTYRTFID 317 (487)
Q Consensus 250 ~~~~~~~~a~~~--~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~ 317 (487)
...|....+..+ +......... ...........++...|+.+.|...+..+...... . ..........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 334433322222 1111111101 11111224555566777788888877776542211 1 1222223333
Q ss_pred HHHhCCCHhHHHHHHHHHHHc
Q 011362 318 GLCKNGYIVEAVELFHTLRIL 338 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~ 338 (487)
++...|+.++|.+.+......
T Consensus 316 ~~~~~g~~~~A~~~L~~al~~ 336 (355)
T cd05804 316 YAFAEGNYATALELLGPVRDD 336 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 456788888888888777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.9e-08 Score=87.20 Aligned_cols=305 Identities=14% Similarity=0.048 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc-hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN-TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
...+..+...+...|+.+.+.+.+....+..+. ..+ ..........+...|++++|.+.+++..+.. +.+...
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a 79 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAA-----RATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLA 79 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcc-----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHH
Confidence 345666666666777777777777666654421 111 1222333445567788888888888877652 334444
Q ss_pred HHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 011362 137 YTSVIRGFCY----AKDWNEAKRLFIEMMDQGVQPN-VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLL 211 (487)
Q Consensus 137 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 211 (487)
+.. ...+.. .+....+.+.+... ....|+ ......+...+...|++++|...++...+.. +.+...+..+.
T Consensus 80 ~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la 155 (355)
T cd05804 80 LKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVA 155 (355)
T ss_pred HHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHH
Confidence 442 222222 34444444444431 111222 2333445567778888888888888888764 23566677778
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCC-CCCH--hhHHHHHHHHHccCCHhHHHHHHHHHHHCCC-ccChhhH-H--HHHHHH
Q 011362 212 DGFCLTGRVNHAKELFVSMESMGC-KHTV--FSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPDVVIH-N--TLFVGL 284 (487)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~-~--~l~~~~ 284 (487)
..+...|++++|...+++...... .++. ..|..+...+...|++++|..++++...... .+..... . .++.-+
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRL 235 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHH
Confidence 888888888888888887766431 1222 2355677788888888888888888754322 1111111 1 222223
Q ss_pred HhcCCHHHHHHH--H-HHHHHcCC-CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC------C--ChHhHHHHHH
Q 011362 285 FEIHQVERAFKL--F-DEMQRNGV-AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCE------F--DIRAYNSLID 352 (487)
Q Consensus 285 ~~~~~~~~a~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~--~~~~~~~l~~ 352 (487)
...|....+... + ........ ............++...|+.++|...+..+...... . .+........
T Consensus 236 ~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~ 315 (355)
T cd05804 236 ELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEAL 315 (355)
T ss_pred HhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHH
Confidence 333322222222 1 11111100 111122224556677788888888888777642211 1 1222333334
Q ss_pred HHHhcCCHHHHHHHHHhccC
Q 011362 353 GLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~ 372 (487)
++...|++++|.+.+.....
T Consensus 316 ~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 316 YAFAEGNYATALELLGPVRD 335 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 45678888888888877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-07 Score=84.22 Aligned_cols=386 Identities=12% Similarity=0.021 Sum_probs=214.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
=+..+...|++++|.+...+++..+ +.+...+..-+.+++..+++++|+.+.+.-... ..+...+.-=+.+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--------~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--------LVINSFFFEKAYC 88 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--------hhcchhhHHHHHH
Confidence 3667788999999999999998876 666777888888889999999999766653321 1111111233445
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH-HHhCCChHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE-LCKNGKMDE 187 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~ 187 (487)
..+.+..++|+..++-... .+..+...-.+.+.+.+++++|.++|+.+.+.+.. + +...+++ +...+--..
T Consensus 89 ~Yrlnk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~ 160 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQ 160 (652)
T ss_pred HHHcccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhh
Confidence 5678999999999883322 24446777788889999999999999999876433 2 2222211 111111011
Q ss_pred HHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC-----C-CCC-H-------hhHHHHHHHHHc
Q 011362 188 ASRLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG-----C-KHT-V-------FSYSILINGYCK 251 (487)
Q Consensus 188 a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~-~-------~~~~~l~~~~~~ 251 (487)
+. .+......| +-..+......+...|++.+|++++......+ . ..+ . ..-..+...+..
T Consensus 161 ~~----~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 161 VQ----LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred HH----HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 11 122222222 12222333455678899999999998873211 0 001 0 122345556778
Q ss_pred cCCHhHHHHHHHHHHHCCCccChhhHHHHHH---HHHhcCCHH--HHHHHHHHHHHcC-------C--CCcHHhHHHHHH
Q 011362 252 NKEIEGALSLYSEMLSKGIKPDVVIHNTLFV---GLFEIHQVE--RAFKLFDEMQRNG-------V--AADTWTYRTFID 317 (487)
Q Consensus 252 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~--~a~~~~~~~~~~~-------~--~~~~~~~~~l~~ 317 (487)
.|+-++|..+|..++..... |......... +.....++- .++..++...... . .--...+...+.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~l 315 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNAL 315 (652)
T ss_pred hcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999887543 4322211111 111111111 1111111111000 0 000011111111
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHH--hcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLC--KSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQM 395 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (487)
.....+..+.+.++...+... .|. ..+..++.... +...+.++.+++....+....-...+.-..+......|++
T Consensus 316 L~l~tnk~~q~r~~~a~lp~~--~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~ 392 (652)
T KOG2376|consen 316 LALFTNKMDQVRELSASLPGM--SPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNP 392 (652)
T ss_pred HHHHhhhHHHHHHHHHhCCcc--Cch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCH
Confidence 111233344444443333211 222 23334443332 2235788888888887763222245556667777889999
Q ss_pred HHHHHHHH--------HHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 396 DKARDLFL--------DMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 396 ~~A~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
+.|.+++. .+.+.+..|- +...+...+.+.++.+.|..++.+..
T Consensus 393 ~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai 444 (652)
T KOG2376|consen 393 EVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAI 444 (652)
T ss_pred HHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHH
Confidence 99999999 5555444443 44456666777777777777777665
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=74.53 Aligned_cols=49 Identities=37% Similarity=0.843 Sum_probs=32.4
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011362 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFI 425 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (487)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666666666666666666666666666666666666666666666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.2e-08 Score=93.08 Aligned_cols=183 Identities=14% Similarity=0.058 Sum_probs=123.0
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEE 83 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 83 (487)
...|+..|=+.++.++. =...|..|...|....+...|.+.|.++.+.+ ..+..........|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 45577777777776522 35668888888888888888999998888765 45666777888888888888888887544
Q ss_pred HHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 84 MANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
..+..+ ...-...|....-.|.+.++...|...|+...+.. |.|...|..++.+|.+.|.+..|.+.|.++...
T Consensus 552 ~~qka~-----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 552 AAQKAP-----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred Hhhhch-----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 443321 01112233345556667778888888888877764 337778888888888888888888888777654
Q ss_pred CCCCChhhHHH--HHHHHHhCCChHHHHHHHHHHHH
Q 011362 164 GVQPNVVTFNV--IMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 164 ~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
.|+. .|.. .....+..|.+.+++..+.....
T Consensus 626 --rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 626 --RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred --CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3322 2222 22244566777777777766543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-07 Score=78.47 Aligned_cols=302 Identities=12% Similarity=0.061 Sum_probs=158.5
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
++.-..-+...+...|++..|+..|....+.+ |.+-.++..-...|...|+...|+.-+.+.++. +||-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-------p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ 107 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-------PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-------chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHH
Confidence 34445556667777777777777777777654 333444445556677777777777777777664 455332
Q ss_pred H-HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh--h------------hHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 011362 137 Y-TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV--V------------TFNVIMDELCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 137 ~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
- ..-...+.+.|.+++|..-|+..+++...-.. . .....+..+...|+...|+.....+++.. +
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~ 186 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-P 186 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-c
Confidence 1 22334566777788887777777765321110 0 11122334455666666666666666653 2
Q ss_pred CCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhh----H
Q 011362 202 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVI----H 277 (487)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~ 277 (487)
-|...+..-..+|...|++..|+.-++...+.. ..+...+..+-..+...|+.+.++..+++.++.+ ||... |
T Consensus 187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~Y 263 (504)
T KOG0624|consen 187 WDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFY 263 (504)
T ss_pred chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHH
Confidence 366666666666667777776666666555543 3344455555556666666666666666666542 33211 1
Q ss_pred HHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCcH---HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChH
Q 011362 278 NTL---------FVGLFEIHQVERAFKLFDEMQRNGVAADT---WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIR 345 (487)
Q Consensus 278 ~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 345 (487)
..+ +......++|.+++...+...+....... ..+..+-.++...+.+.+|++...+++... +.|+.
T Consensus 264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~ 342 (504)
T KOG0624|consen 264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHH
Confidence 000 01112233444444444444443211111 112223333344445555555555554432 23344
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccC
Q 011362 346 AYNSLIDGLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (487)
++..-..+|.-...++.|+.-|+.+.+
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 444445555555555555555555544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-07 Score=77.86 Aligned_cols=305 Identities=11% Similarity=0.016 Sum_probs=221.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
.++.-..-+...+...|++.+|+.-|..+.+.+ +.+-.++..-...|...|+..-|+.=+.+..+.. ||-.
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK--------pDF~ 106 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK--------PDFM 106 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC--------ccHH
Confidence 345555667888889999999999999888643 2233344455567888999999999898888753 4432
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhh------------HHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 011362 101 -TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP--NVVT------------YTSVIRGFCYAKDWNEAKRLFIEMMDQGV 165 (487)
Q Consensus 101 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 165 (487)
.-..-...+.+.|.++.|..-|+.+++..... .... ....+..+.-.|+...|+.....+++..
T Consensus 107 ~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~- 185 (504)
T KOG0624|consen 107 AARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ- 185 (504)
T ss_pred HHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-
Confidence 22334556788999999999999988764211 1111 1223445667889999999999998864
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHh-h---
Q 011362 166 QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF-S--- 241 (487)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~--- 241 (487)
+.+...+..-..+|...|++..|+.=++...+... .+..++..+...+...|+.+.++...++..+.+ |+.. .
T Consensus 186 ~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~ 262 (504)
T KOG0624|consen 186 PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPF 262 (504)
T ss_pred cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHH
Confidence 34777788888899999999999988877766533 366677778888899999999999999888764 3321 1
Q ss_pred HHHH---------HHHHHccCCHhHHHHHHHHHHHCCCccC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 011362 242 YSIL---------INGYCKNKEIEGALSLYSEMLSKGIKPD---VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT 309 (487)
Q Consensus 242 ~~~l---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 309 (487)
|..+ +......++|-++++..+..++..+... ...+..+-.++...+++.+|++...++++-. +.|.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv 341 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHH
Confidence 2111 2234456788888888888887644322 2345556667778899999999999998852 3447
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 310 WTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
.++..-..+|.-...++.|+.-|+...+.+
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 888888999999999999999999998775
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4e-07 Score=84.24 Aligned_cols=306 Identities=15% Similarity=0.084 Sum_probs=175.3
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------C-CCCCHHHHHHHHHHHHccC
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVF--------G-CEPDVFTYTTLVNGLCRTS 72 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~-~~~~~~~~~~l~~~~~~~g 72 (487)
|+++.|.+-.+.+. +..+|..+.+.|.+.++++-|.-.+..|... . -.++ ..-..........|
T Consensus 742 G~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvLAieLg 814 (1416)
T KOG3617|consen 742 GSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVLAIELG 814 (1416)
T ss_pred ccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHHHHHHh
Confidence 77888888777654 4567999999999999888776665554322 0 1122 22223344456778
Q ss_pred ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhh
Q 011362 73 HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNE 152 (487)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (487)
..++|+.+|++..+ |..|=..|...|.+++|.++-+.--+.. =..||......+-..+|.+.
T Consensus 815 MlEeA~~lYr~ckR---------------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~ 876 (1416)
T KOG3617|consen 815 MLEEALILYRQCKR---------------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA 876 (1416)
T ss_pred hHHHHHHHHHHHHH---------------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence 88999888887654 2234445556777777777755422221 12355555555556667777
Q ss_pred HHHHHHHHHH----------cC---------CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----------C----
Q 011362 153 AKRLFIEMMD----------QG---------VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH----------G---- 199 (487)
Q Consensus 153 a~~~~~~~~~----------~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~---- 199 (487)
|++.|++... .. -..|...|.-...-+-..|+.+.|+.+|...... |
T Consensus 877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDK 956 (1416)
T ss_pred HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchH
Confidence 7766654311 11 0113334444444555667777777777665432 0
Q ss_pred ------CCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc----------CCCCCH---------hh-------------
Q 011362 200 ------VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM----------GCKHTV---------FS------------- 241 (487)
Q Consensus 200 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~---------~~------------- 241 (487)
-.-|......+.+.|...|++.+|..+|.+.... +..... .-
T Consensus 957 Aa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~ 1036 (1416)
T KOG3617|consen 957 AARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG 1036 (1416)
T ss_pred HHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch
Confidence 1124455666788888888888888888765422 111000 00
Q ss_pred -HHHHHHHHHccCCHhHHHHHHH--------HHHHC--CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH--------
Q 011362 242 -YSILINGYCKNKEIEGALSLYS--------EMLSK--GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR-------- 302 (487)
Q Consensus 242 -~~~l~~~~~~~~~~~~a~~~~~--------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------- 302 (487)
+..-+..|-+.|.+.+|+++-- +++.. ....|+...+.....++...++++|..++-...+
T Consensus 1037 ~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC 1116 (1416)
T KOG3617|consen 1037 YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLC 1116 (1416)
T ss_pred hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1112223444455544444311 11222 2334667777777888888888888877654321
Q ss_pred --cCC----------------CCcH----HhHHHHHHHHHhCCCHhHHHHHH
Q 011362 303 --NGV----------------AADT----WTYRTFIDGLCKNGYIVEAVELF 332 (487)
Q Consensus 303 --~~~----------------~~~~----~~~~~l~~~~~~~~~~~~a~~~~ 332 (487)
.++ .|+. ..+..+...|.++|.+..|.+-|
T Consensus 1117 ~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKf 1168 (1416)
T KOG3617|consen 1117 KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKF 1168 (1416)
T ss_pred hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 111 1222 34566777888888887776554
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.9e-11 Score=71.93 Aligned_cols=50 Identities=44% Similarity=0.930 Sum_probs=48.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR 70 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (487)
||+.+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999874
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=6.1e-07 Score=91.84 Aligned_cols=339 Identities=13% Similarity=0.034 Sum_probs=211.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC------CC--hhhHHHHHH
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ------PN--VVTFNVIMD 177 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~ 177 (487)
.......|+++.+..+++.+.......+..........+...|+++++..++......-.. +. ......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3445566777777777766532111112223334455566789999999998877543111 11 111222334
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC---CC--CHhhHHHHHHH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDA----FTYNTLLDGFCLTGRVNHAKELFVSMESMGC---KH--TVFSYSILING 248 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~ 248 (487)
.+...|++++|...++.....-...+. .....+...+...|++++|...+.+.....- .+ ....+..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 566899999999999987763111121 2345566677889999999999888764311 11 12344556777
Q ss_pred HHccCCHhHHHHHHHHHHHC----CCc--c-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--cHHhHHHHHH
Q 011362 249 YCKNKEIEGALSLYSEMLSK----GIK--P-DVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG--VAA--DTWTYRTFID 317 (487)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~ 317 (487)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+.+..... ..+ ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 88899999999998876652 211 1 12233445566777899999999988775431 111 2334445666
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCC-ChHhH-----HHHHHHHHhcCCHHHHHHHHHhccCCCCCCc---HHHHHHHHHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEF-DIRAY-----NSLIDGLCKSGRLEIALELFRSLPCGVLVPN---VVTYSIMIGG 388 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~ 388 (487)
.+...|++++|...+.......... ....+ ...+..+...|+.+.|...+........... ...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 7788999999999988875421111 11111 1122444568899999999877654321111 1123456778
Q ss_pred HHccCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 389 LCNDGQMDKARDLFLDMEEN----AVVPN-VITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
+...|++++|...++++... |..++ ..+...+..++.+.|+.++|...+.++.+..
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88899999999999988653 32222 2456667778889999999999999998654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.9e-09 Score=94.11 Aligned_cols=224 Identities=12% Similarity=0.113 Sum_probs=157.1
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++.+|.-.|+.+++.+ |-+..+|..|.......++-..|+..+.+.++.. +.+..+...|...|...|.-..|...+
T Consensus 299 G~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~~L 376 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALKML 376 (579)
T ss_pred CCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 77899999999999997 5589999999999999999999999999999985 567778889999999999999999999
Q ss_pred HHHHhCCCCCcccccc--chHHHHHHHHHHHhcCChhHHHHHHHHH-HhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 82 EEMANGNGEFGVVCEP--NTVTYTTIIDGLCKEGFVDKAKELLLQM-KDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
+......+.......+ +...-.. ..+.....+....++|-.+ .+.+..+|+.+...|.-.|.-.|.+++|.+.|+
T Consensus 377 ~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~ 454 (579)
T KOG1125|consen 377 DKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFE 454 (579)
T ss_pred HHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHH
Confidence 9987755321111110 0000000 0111111223334444443 333434677777777777777888888888888
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSMES 232 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (487)
.++...+. |...||.|...++...+.++|+..|++.++. .|. +.....|...|...|.+++|.+.|-.++.
T Consensus 455 ~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 455 AALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 87775433 5667788888888777888888888877765 333 34555667777778888887777665543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.19 E-value=7.2e-08 Score=78.28 Aligned_cols=327 Identities=15% Similarity=0.153 Sum_probs=219.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
-+.+.+..+.+..+++.|++++..-.++. |.+......|..+|....++..|-+.|+++-.. .|...-|..
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-------p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrl 82 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS-------PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRL 82 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC-------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHH
Confidence 35666777788899999999999988876 568889999999999999999999999999775 455554443
Q ss_pred -HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH--HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 140 -VIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTF--NVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 140 -l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
-.+.+.+.+.+..|+++...|... |+...- ..-.......+++..+..++++....| +..+.+...-...+
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeec
Confidence 456777889999999999887653 222222 222223456788888888888765332 44455555566678
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc-------------Ch---------
Q 011362 217 TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP-------------DV--------- 274 (487)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~--------- 274 (487)
.|+++.|.+-|+...+.+--.....|+.- -++.+.++++.|++...+++++|+.. |.
T Consensus 157 egqyEaAvqkFqaAlqvsGyqpllAYniA-LaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQPLLAYNLA-LAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCCchhHHHHH-HHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 99999999999998876533344455544 45667899999999999999876531 11
Q ss_pred ------hhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhH
Q 011362 275 ------VIHNTLFVGLFEIHQVERAFKLFDEMQRN-GVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAY 347 (487)
Q Consensus 275 ------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 347 (487)
..++.-...+.+.++++.|.+.+-.|--+ ....|+.|+..+.-. -..+++.+..+-+.-+...+ |....+|
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP~ETF 313 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFPPETF 313 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCChHHH
Confidence 11222223355778888888777666322 123456666555432 23455666666666666665 4567888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCC-CCcHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLPCGVL-VPNVVTYSIMIGGLC-NDGQMDKARDLFLDM 405 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~ 405 (487)
..++-.|++..-++-|-+++.+-..... -.+...|+ ++.++. ..-.+++|.+-++.+
T Consensus 314 ANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 314 ANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence 8899999999889999888865443211 12333443 333332 344566666555444
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.5e-07 Score=92.76 Aligned_cols=375 Identities=10% Similarity=-0.050 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
+......+...|++.+|...+..+.. .+. ..............|++..+..+++.+.... ...++.....
T Consensus 344 h~raa~~~~~~g~~~~Al~~a~~a~d---~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~------~~~~~~l~~~ 414 (903)
T PRK04841 344 HRAAAEAWLAQGFPSEAIHHALAAGD---AQLLRDILLQHGWSLFNQGELSLLEECLNALPWEV------LLENPRLVLL 414 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHCCC---HHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHH------HhcCcchHHH
Confidence 34445556666776666654443311 110 1112223344556788888777777653211 1112223344
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC------CCC--HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhH
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNI------KPN--VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV----VTF 172 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~ 172 (487)
....+...|+++++..++......-- .+. ......+...+...|++++|...+++........+. ...
T Consensus 415 ~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~ 494 (903)
T PRK04841 415 QAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVAT 494 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHH
Confidence 45556678999999999987754310 111 112223345567899999999999998763212121 234
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc----CCCC---CHh
Q 011362 173 NVIMDELCKNGKMDEASRLLDLMIQH----GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM----GCKH---TVF 240 (487)
Q Consensus 173 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~ 240 (487)
+.+...+...|++++|...++..... |. .....+...+...+...|+++.|...+++.... +... ...
T Consensus 495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 574 (903)
T PRK04841 495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEF 574 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHH
Confidence 55566778899999999999887643 11 111234556677888999999999998876542 2111 123
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCC--Ccc--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCcHH--hH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKG--IKP--DVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG--VAADTW--TY 312 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~--~~ 312 (487)
.+..+...+...|++++|...+.+..... ..+ ....+..+...+...|+++.|...+..+.... ...... ..
T Consensus 575 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 654 (903)
T PRK04841 575 LLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIAN 654 (903)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhH
Confidence 34455667777899999999998876531 111 22344446667788999999999988875421 111111 10
Q ss_pred --HHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCC-cHHHH
Q 011362 313 --RTFIDGLCKNGYIVEAVELFHTLRILKCEFD---IRAYNSLIDGLCKSGRLEIALELFRSLPCG----VLVP-NVVTY 382 (487)
Q Consensus 313 --~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~ 382 (487)
...+..+...|+.+.|..++........... ...+..+..++...|++++|...++++... +..+ ...+.
T Consensus 655 ~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~ 734 (903)
T PRK04841 655 ADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNL 734 (903)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHH
Confidence 1122344568899999999877653221111 111345677788899999999999887642 2222 23456
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011362 383 SIMIGGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
..+..++...|+.++|...+.++.+..
T Consensus 735 ~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 735 ILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 677788899999999999999998753
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.6e-09 Score=92.27 Aligned_cols=149 Identities=16% Similarity=0.084 Sum_probs=63.0
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh----CC
Q 011362 248 GYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK----NG 323 (487)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~ 323 (487)
++...|++++|++++... .+.......+..+.+.++++.|.+.++.|.+. ..| .+...+..++.. .+
T Consensus 111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e 181 (290)
T PF04733_consen 111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGE 181 (290)
T ss_dssp HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTT
T ss_pred HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCch
Confidence 344455555555554321 13334444445555555555555555555442 112 222233332221 12
Q ss_pred CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCH-HHHHHHH
Q 011362 324 YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQM-DKARDLF 402 (487)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~ 402 (487)
.+.+|..+|+++... .++++.+.+.+..++...|++++|.+++.+..+.+ +-++.++..++.+....|+. +.+.+++
T Consensus 182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l 259 (290)
T PF04733_consen 182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL 259 (290)
T ss_dssp CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence 345555555554332 23444445555555555555555555555544432 22334444444444444444 3344444
Q ss_pred HHHHh
Q 011362 403 LDMEE 407 (487)
Q Consensus 403 ~~~~~ 407 (487)
.++..
T Consensus 260 ~qL~~ 264 (290)
T PF04733_consen 260 SQLKQ 264 (290)
T ss_dssp HHCHH
T ss_pred HHHHH
Confidence 44443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-08 Score=90.42 Aligned_cols=223 Identities=13% Similarity=0.088 Sum_probs=114.3
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011362 66 NGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145 (487)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (487)
.-+.+.|++.+|.=.|+...+.+ |.+...|..|...-...++-..|+..+++..+.. +-+..+...|.-.|.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-------P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSyt 364 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-------PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYT 364 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-------hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHh
Confidence 33445555556655565555554 4555556666555555555555555555555542 224445555555555
Q ss_pred hcCChhhHHHHHHHHHHcCCC-----C---ChhhHHHHHHHHHhCCChHHHHHHHHHH-HHCCCCCCHHHHHHHHHHHHc
Q 011362 146 YAKDWNEAKRLFIEMMDQGVQ-----P---NVVTFNVIMDELCKNGKMDEASRLLDLM-IQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~-----~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~ 216 (487)
..|.-.+|++.++..+...++ + +...-.. ..+.....+....++|-.+ ...+..+|+.+...|.-.|.-
T Consensus 365 Neg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 365 NEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred hhhhHHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 555555565555555443210 0 0000000 1111122223333333332 233333455556666666666
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 011362 217 TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKL 296 (487)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (487)
.|++++|...|+.+.... |.|...|+.|...+....+.++|+..|.+.++..+. -+.+...+..+|...|.+++|.+.
T Consensus 443 s~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~-yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPG-YVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred chHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCC-eeeeehhhhhhhhhhhhHHHHHHH
Confidence 666666666666666554 445556666666666666666666666666654221 123444455566666666666666
Q ss_pred HHHH
Q 011362 297 FDEM 300 (487)
Q Consensus 297 ~~~~ 300 (487)
|-.+
T Consensus 521 lL~A 524 (579)
T KOG1125|consen 521 LLEA 524 (579)
T ss_pred HHHH
Confidence 5544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.13 E-value=7e-09 Score=88.44 Aligned_cols=256 Identities=13% Similarity=0.099 Sum_probs=135.0
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG 257 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (487)
.+.-.|.+..++.-.+ ........+......+.+++...|+++.++ .++.... +|.......+...+...++-+.
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHH
Confidence 3344566666554444 222211122333444556666666655433 2332222 4444444444444433344445
Q ss_pred HHHHHHHHHHCCCcc-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 011362 258 ALSLYSEMLSKGIKP-DVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLR 336 (487)
Q Consensus 258 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 336 (487)
++.-+++.......+ +..........+...|++++|++++... .+.......+..+.+.++++.|.+.++.+.
T Consensus 85 ~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~ 158 (290)
T PF04733_consen 85 ALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQ 158 (290)
T ss_dssp HHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 544444433332221 2222222334455667777777766432 345566667777778888888888887777
Q ss_pred HcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011362 337 ILKCEFDIRAYNSLIDGLCK----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP 412 (487)
Q Consensus 337 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 412 (487)
+.+ .| .+...++.++.. ...+.+|..+|+++.+. ..+++.+.+.++.++...|++++|..++.+.......
T Consensus 159 ~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~- 233 (290)
T PF04733_consen 159 QID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN- 233 (290)
T ss_dssp CCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-
T ss_pred hcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-
Confidence 542 22 233334444332 23577788888877665 3567777777777778888888888887777665432
Q ss_pred CHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHH
Q 011362 413 NVITFDMLIRGFIRINEP-SKVIELLHKMKEINVMPDASI 451 (487)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~ 451 (487)
++.++..++-+....|+. +.+.+.+.++... .|+...
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~~ 271 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHPL 271 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCChH
Confidence 556666666666677766 5566677777653 354433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.2e-06 Score=79.49 Aligned_cols=263 Identities=15% Similarity=0.163 Sum_probs=155.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
|+......+.++...+-+.+-+++++++.-.++.| ..+...-+.|+-...+. +..+..+..+++-..+. |+
T Consensus 983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~F----se~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-~~--- 1053 (1666)
T KOG0985|consen 983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF----SENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-PD--- 1053 (1666)
T ss_pred ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccc----ccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-hh---
Confidence 45555666777777788888888888877655332 23334444444444333 44556666666554421 12
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
+...+...+-+++|..+|++.- .+....+.++. .-+..++|.++-++.. .+..|..+..+-.+
T Consensus 1054 ---ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1054 ---IAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQ 1116 (1666)
T ss_pred ---HHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHh
Confidence 3444556667777777777642 23333444443 2344555555554431 45667777777777
Q ss_pred CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHH
Q 011362 217 TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKL 296 (487)
Q Consensus 217 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 296 (487)
.|.+.+|++-|-+. .|+..|..+++...+.|.|++-.+.+....+..-.|... ..++-+|.+.++..+..++
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 77777777655332 355667777888888888888777777666654444433 4566677777776665544
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHh
Q 011362 297 FDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRS 369 (487)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 369 (487)
+ ..|+......+..-|...+.++.|.-+|..+. .|..|...+...|++..|.+.-++
T Consensus 1189 i-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS---------N~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1189 I-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS---------NFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred h-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh---------hHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3 24566666666666666677766666655432 344555555555555555554443
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-06 Score=72.32 Aligned_cols=87 Identities=9% Similarity=0.046 Sum_probs=64.1
Q ss_pred HHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc
Q 011362 13 RILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFG 92 (487)
Q Consensus 13 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 92 (487)
+-++.+ |.|..+|+.|++-+..+ -++++.+.++++... .+-.+..|..-+..-.+..+++...++|.+.+..
T Consensus 11 ~rie~n-P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk----- 82 (656)
T KOG1914|consen 11 ERIEEN-PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK----- 82 (656)
T ss_pred HHHhcC-CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----
Confidence 334444 56888899888876555 888899999888764 2445667888888888888999999998887764
Q ss_pred cccccchHHHHHHHHHHH
Q 011362 93 VVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~ 110 (487)
..+.+.|...+..--
T Consensus 83 ---vLnlDLW~lYl~YVR 97 (656)
T KOG1914|consen 83 ---VLNLDLWKLYLSYVR 97 (656)
T ss_pred ---HhhHhHHHHHHHHHH
Confidence 356777777776443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.05 E-value=3.6e-07 Score=89.24 Aligned_cols=241 Identities=11% Similarity=0.052 Sum_probs=154.2
Q ss_pred HHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----HHHHHHHHHHHHccCChHHHHHHH
Q 011362 7 GFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD-----VFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 7 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
-..-|++++... |.++..|...+....+.++.++|++++++++.. +.+. .-+|.++++.-..-|.-+...++|
T Consensus 1443 saeDferlvrss-PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVF 1520 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS-PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVF 1520 (1710)
T ss_pred CHHHHHHHHhcC-CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHH
Confidence 344566666654 445667888888888888888888888887754 2221 125666666666667777778888
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+++.+.. ..-..|..|...|.+.+.+++|.++++.|.+. .......|...+..+.+.++-+.|..++.+++
T Consensus 1521 eRAcqyc--------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1521 ERACQYC--------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred HHHHHhc--------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8877743 23456777777888888888888888887665 33466677777777777777777888877776
Q ss_pred HcCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH-
Q 011362 162 DQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV- 239 (487)
Q Consensus 162 ~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 239 (487)
+.-+.. ........+..-.+.|+.+++..+|+..+..- +--...|+.++..-.+.|+.+.+..+|+++...++.+..
T Consensus 1592 ~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkm 1670 (1710)
T KOG1070|consen 1592 KSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKM 1670 (1710)
T ss_pred hhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHh
Confidence 642110 12223334445556777777777777766652 224566777777777777777777777777766554422
Q ss_pred -hhHHHHHHHHHccCCHhHHH
Q 011362 240 -FSYSILINGYCKNKEIEGAL 259 (487)
Q Consensus 240 -~~~~~l~~~~~~~~~~~~a~ 259 (487)
..|...+..=-+.|+-+.+.
T Consensus 1671 KfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1671 KFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred HHHHHHHHHHHHhcCchhhHH
Confidence 23444444333444443333
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-07 Score=86.06 Aligned_cols=237 Identities=14% Similarity=0.082 Sum_probs=182.5
Q ss_pred CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHH
Q 011362 201 RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTL 280 (487)
Q Consensus 201 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 280 (487)
+|-...-..+...+...|-...|..+++++. .|...+.+|+..|+..+|..+..+-.+ -+|++..|..+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~L 463 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLL 463 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHh
Confidence 3444455667788888999999999998765 567788999999999999999988877 35788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCH
Q 011362 281 FVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRL 360 (487)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 360 (487)
....-...-+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +....+|-.+..+..+.+++
T Consensus 464 GDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 464 GDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred hhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence 77777777778888887665432 11222223345789999999999888766 66778888888888899999
Q ss_pred HHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 361 EIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKM 440 (487)
Q Consensus 361 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (487)
+.|.+.|....... +.+...||.+..+|.+.|+..+|...+++..+.+ .-+...|...+-....-|.+++|.+.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 99999999888753 4456899999999999999999999999999887 446777888888889999999999999998
Q ss_pred HhcCC-CCCHHHHHHHHHH
Q 011362 441 KEINV-MPDASIVSIVVDL 458 (487)
Q Consensus 441 ~~~~~-~~~~~~~~~l~~~ 458 (487)
.+... ..|..+...++..
T Consensus 614 l~~~~~~~d~~vl~~iv~~ 632 (777)
T KOG1128|consen 614 LDLRKKYKDDEVLLIIVRT 632 (777)
T ss_pred HHhhhhcccchhhHHHHHH
Confidence 74321 1244444444433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-07 Score=84.28 Aligned_cols=351 Identities=16% Similarity=0.070 Sum_probs=201.2
Q ss_pred CCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccc---c
Q 011362 21 PDAVTFTSLIK--GLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVV---C 95 (487)
Q Consensus 21 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~ 95 (487)
-|..+-..++. .|...|+.+.|.+..+.+. +..+|..+...|.+..+.+-|.-.+-.|....+....- -
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 35666666665 4678899999988877765 35678899999999888887776665554432100000 0
Q ss_pred ccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 011362 96 EPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVI 175 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 175 (487)
.++ ..=..........|.+++|..+|.+-++. ..|=..|-..|.|++|.++-+.--... =..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 111 12222333345679999999999887753 344456667899999999876532221 23466667
Q ss_pred HHHHHhCCChHHHHHHHHHHH----------HCC---------CCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC
Q 011362 176 MDELCKNGKMDEASRLLDLMI----------QHG---------VRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCK 236 (487)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 236 (487)
..-+-..++.+.|+++|++.. ... -..|...|.-....+...|+.+.|+.+|....+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---- 940 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---- 940 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----
Confidence 777777888888888876432 110 122445556666666777888888888876653
Q ss_pred CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH----------cCCC
Q 011362 237 HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR----------NGVA 306 (487)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~~~ 306 (487)
|..+++..|-.|+.++|-++-++- -|......+.+.|...|++.+|..+|.+... ++..
T Consensus 941 -----~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~ 1009 (1416)
T KOG3617|consen 941 -----YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK 1009 (1416)
T ss_pred -----hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 333444444455555554443321 1333344455555555555555555543321 1100
Q ss_pred C------------cH-----------HhHHHHHHHHHhCCCHhHHHHHHHH--------HH--HcCCCCChHhHHHHHHH
Q 011362 307 A------------DT-----------WTYRTFIDGLCKNGYIVEAVELFHT--------LR--ILKCEFDIRAYNSLIDG 353 (487)
Q Consensus 307 ~------------~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~--------~~--~~~~~~~~~~~~~l~~~ 353 (487)
. |. .-....+..|.+.|.+.+|+++--+ ++ +.....|+...+.-.+.
T Consensus 1010 d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadF 1089 (1416)
T KOG3617|consen 1010 DRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADF 1089 (1416)
T ss_pred HHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 0 00 0011223345566666666543211 11 22334567777777777
Q ss_pred HHhcCCHHHHHHHHHhccC----------CC----------------CCCcH----HHHHHHHHHHHccCCHHHHHHHHH
Q 011362 354 LCKSGRLEIALELFRSLPC----------GV----------------LVPNV----VTYSIMIGGLCNDGQMDKARDLFL 403 (487)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~----------~~----------------~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 403 (487)
+....++++|..++-...+ .| -.|+. .....+...|.++|.+..|-+-|.
T Consensus 1090 F~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1090 FENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHh
Confidence 7777777777766643321 11 11222 345667778888888888777665
Q ss_pred HH
Q 011362 404 DM 405 (487)
Q Consensus 404 ~~ 405 (487)
++
T Consensus 1170 QA 1171 (1416)
T KOG3617|consen 1170 QA 1171 (1416)
T ss_pred hh
Confidence 44
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.6e-07 Score=77.12 Aligned_cols=214 Identities=14% Similarity=0.087 Sum_probs=143.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-HTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
+..+-..+...++.++|+.+.+++++.. +-+..+|+....++...| ++++++..++++.+.+ +.+..+|+.
T Consensus 40 ~~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-------pknyqaW~~ 111 (320)
T PLN02789 40 MDYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-------PKNYQIWHH 111 (320)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-------CcchHHhHH
Confidence 3344444556778888999998888774 445556766666666667 5788999998888876 566667776
Q ss_pred HHHHHHhcCCh--hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 105 IIDGLCKEGFV--DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 105 l~~~~~~~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
...++.+.|.. +++++.++++.+.+. -+..+|+....++...|+++++++.++++++.++. +...|+.....+.+.
T Consensus 112 R~~~l~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 112 RRWLAEKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRS 189 (320)
T ss_pred HHHHHHHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhc
Confidence 65555566653 677888888877653 37788888888888888899999999998887654 566666665555443
Q ss_pred ---CCh----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC----CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 011362 183 ---GKM----DEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT----GRVNHAKELFVSMESMGCKHTVFSYSILINGYCK 251 (487)
Q Consensus 183 ---~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 251 (487)
|.. ++.+.+...++.... -+...|+.+...+... +...+|.+.+......+ +.+......|+..|+.
T Consensus 190 ~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 190 PLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 222 356666656665532 3566676666666552 33455666666665543 4456666677777764
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.1e-07 Score=84.01 Aligned_cols=184 Identities=10% Similarity=0.082 Sum_probs=112.2
Q ss_pred hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011362 74 TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEA 153 (487)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 153 (487)
...|...|-+..+.+ +.-...|..|...|....+...|.+.|++..+.+ ..+...+......|++..+|+.|
T Consensus 474 ~~~al~ali~alrld-------~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-------VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HHHHHHHHHHHHhcc-------cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 555666665555544 3335667777777777667777777777776653 23566677777777777888877
Q ss_pred HHHHHHHHHcCC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011362 154 KRLFIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMES 232 (487)
Q Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (487)
..+.-..-+... ..-...|....-.|.+.++...+..-|+...+..+. |...|..++.+|.+.|.+..|.++|.++..
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 777333222110 001122333334556677777777777777665333 667777777888888888888887777765
Q ss_pred cCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 233 MGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
.. |.+...-......-+..|.+.+|+..+..+..
T Consensus 625 Lr-P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 625 LR-PLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred cC-cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 53 22222222333344566777777777766553
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.2e-06 Score=75.95 Aligned_cols=131 Identities=13% Similarity=0.062 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc---CC----HHHHH
Q 011362 292 RAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS---GR----LEIAL 364 (487)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~a~ 364 (487)
++..+++++.+.. +-+..++.....++...|+++++++.+.++++.+ +.+..+|+.....+.+. |. .+++.
T Consensus 126 ~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el 203 (320)
T PLN02789 126 KELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSEL 203 (320)
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHH
Confidence 3444444444432 2233444444444444455555555555554443 23334444333333222 11 12344
Q ss_pred HHHHhccCCCCCCcHHHHHHHHHHHHcc----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011362 365 ELFRSLPCGVLVPNVVTYSIMIGGLCND----GQMDKARDLFLDMEENAVVPNVITFDMLIRGFIR 426 (487)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (487)
.+..+++... +-|...|+.+...+... ++..+|..++.+..+.++ .+...+..|+..|+.
T Consensus 204 ~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~~l~d~~~~ 267 (320)
T PLN02789 204 KYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHHHHHHHHHh
Confidence 4443444332 33444555555555442 223445555555444321 134445555555543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.4e-05 Score=76.22 Aligned_cols=319 Identities=13% Similarity=0.133 Sum_probs=175.4
Q ss_pred HHHHHHHHhCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011362 8 FVVLGRILKSCFT--PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE--PDVFTYTTLVNGLCRTSHTIVALNLFEE 83 (487)
Q Consensus 8 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 83 (487)
+++.++.++.+.+ .|++..+..+.++...+-+.+-+++++++.-.+-. .+...-+.++-...+. +..+..+..++
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~r 1045 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINR 1045 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHH
Confidence 4556666655544 34566677788899999999999999998753211 1122233333333332 33344444444
Q ss_pred HHhCCCCCccc-----------------cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011362 84 MANGNGEFGVV-----------------CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY 146 (487)
Q Consensus 84 ~~~~~~~~~~~-----------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 146 (487)
+..-+.+--.. ...+..+.+.|+.- -+.+++|.+.-++.. .+.+|..+..+-.+
T Consensus 1046 LdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~---i~~ldRA~efAe~~n------~p~vWsqlakAQL~ 1116 (1666)
T KOG0985|consen 1046 LDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIEN---IGSLDRAYEFAERCN------EPAVWSQLAKAQLQ 1116 (1666)
T ss_pred hccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHH---hhhHHHHHHHHHhhC------ChHHHHHHHHHHHh
Confidence 44332000000 01122222222221 233344433333221 34677888888888
Q ss_pred cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHH
Q 011362 147 AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKEL 226 (487)
Q Consensus 147 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 226 (487)
.|...+|++-|-+. .|+..|..++....+.|.+++..+++....+..-+|... ..|+-+|++.++..+.+++
T Consensus 1117 ~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1117 GGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 88888887766543 266678888888888888888888887777765554433 4567778888777665554
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 011362 227 FVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA 306 (487)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 306 (487)
+ ..|+......+..-|...+.++.|.-+|..+ .-|..+...+...|++..|.+.-+++.
T Consensus 1189 i-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAn----- 1247 (1666)
T KOG0985|consen 1189 I-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKAN----- 1247 (1666)
T ss_pred h-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhcc-----
Confidence 4 2456666667777777777777776666433 345666667777777776665443321
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 307 ADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
+..+|..+-.+|...+.+.-| .+...++-....-+..++..|-..|-+++-+.+++...
T Consensus 1248 -s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1248 -STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred -chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 334454444444444333322 11112222233334445555555555555555555443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.2e-06 Score=78.70 Aligned_cols=188 Identities=18% Similarity=0.159 Sum_probs=76.3
Q ss_pred HcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHH
Q 011362 215 CLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAF 294 (487)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (487)
.....+.+|+.+++.+.+.+ ....-|..+...|...|+++.|.++|.+. ..+.-.+..|.+.|+|+.|.
T Consensus 743 i~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHH
Confidence 33444444444444444331 12222334444444445554444444321 11223344444445554444
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 011362 295 KLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV 374 (487)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (487)
++-.+... .......|..-..-+-..|++.+|.++|-.+. .|+ ..|.+|-+.|..+..+++..+-....
T Consensus 812 kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k~h~d~ 880 (1636)
T KOG3616|consen 812 KLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEKHHGDH 880 (1636)
T ss_pred HHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHHhChhh
Confidence 44333321 12222333333333444444444444443221 222 22344444555444444444332110
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 011362 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
-..|-..+..-+-..|+...|...|-+.-+ |..-+..|..++-+++|.++
T Consensus 881 ---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 881 ---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred ---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 112333444445555555555555443322 33344445555555555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=5.9e-07 Score=87.83 Aligned_cols=226 Identities=14% Similarity=0.064 Sum_probs=152.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhH
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRP-----DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 242 (487)
+...|-..|......++.++|.++.++++.. +.+ -...|.++++.-..-|.-+...++|+++.+.- .....|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence 4556777777778888888888888877654 211 13456666666666677777778888877652 234457
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc---HHhHHHHHHHH
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD---TWTYRTFIDGL 319 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~ 319 (487)
..|...|.+.+..++|.++++.|.+. +.....+|...+..+.+.++.+.|..++.++++. -|. .......+..-
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence 77888888888888888888888775 2245667888888888888888888888777764 232 34455556666
Q ss_pred HhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH--HHHHHHHHHHHccCCHHH
Q 011362 320 CKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV--VTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 320 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~ 397 (487)
.+.|+.+++..+|+...... |.....|+.+++.-.++|+.+.++.+|+++...++.|.. ..|...+..--..|+-..
T Consensus 1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence 77788888888887777543 556677778888777888888888888877776655543 233333333333444443
Q ss_pred HHH
Q 011362 398 ARD 400 (487)
Q Consensus 398 A~~ 400 (487)
++.
T Consensus 1690 vE~ 1692 (1710)
T KOG1070|consen 1690 VEY 1692 (1710)
T ss_pred HHH
Confidence 333
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.7e-06 Score=79.34 Aligned_cols=225 Identities=16% Similarity=0.135 Sum_probs=157.1
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 011362 175 IMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE 254 (487)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (487)
.+.+......+.+|+.+++.+..... -..-|..+...|+..|+++.|.++|.+.- .++..|.+|.+.|+
T Consensus 738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k 806 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK 806 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence 34455667788899999988876633 34456778899999999999999986542 46677899999999
Q ss_pred HhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 011362 255 IEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHT 334 (487)
Q Consensus 255 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 334 (487)
|+.|.++-.+... +......|..-..-.-..|++.+|.+++-.+. .|+ ..+.+|-+.|..+..+++..+
T Consensus 807 w~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 807 WEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 9999998777653 34445566666666778899999988775543 243 346788899999988887766
Q ss_pred HHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH
Q 011362 335 LRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNV 414 (487)
Q Consensus 335 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 414 (487)
-.. ..-..+...+..-|...|++..|..-|-+..+ |.+-+..|...+-+++|.++-+. .|- .|.
T Consensus 876 ~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriakt---egg-~n~ 939 (1636)
T KOG3616|consen 876 HHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKT---EGG-ANA 939 (1636)
T ss_pred hCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhc---ccc-ccH
Confidence 432 22234556677788889999999988866553 45556677778888888776432 222 244
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 415 ITFDMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
.-....+++-.-.| +.|.+++++
T Consensus 940 ~k~v~flwaksigg--daavkllnk 962 (1636)
T KOG3616|consen 940 EKHVAFLWAKSIGG--DAAVKLLNK 962 (1636)
T ss_pred HHHHHHHHHHhhCc--HHHHHHHHh
Confidence 33344455444444 567777776
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.7e-07 Score=84.25 Aligned_cols=234 Identities=12% Similarity=0.066 Sum_probs=184.7
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 011362 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGY 249 (487)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (487)
..-..+...+.+.|-...|..+++++ ..|...+.+|...|+..+|..+..+..+. +|++..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 33445677888999999999999875 45666788999999999999999888773 78999999999888
Q ss_pred HccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHH
Q 011362 250 CKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAV 329 (487)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 329 (487)
....-+++|+++.+..... .-..+.....+.++++++.+.|+.-.+.+ +.-..+|....-+..+.+++..|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 8777889999988776442 22333334456799999999998887753 445678888888888999999999
Q ss_pred HHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011362 330 ELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
+.|....... |.+...||.+-.+|.+.++-.+|...+.+..+.+ ..+...|...+....+.|.+++|.+.+.++.+..
T Consensus 540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 9999988764 5677899999999999999999999999999876 5567788888888999999999999999986431
Q ss_pred -CCCCHHHHHHHHHHH
Q 011362 410 -VVPNVITFDMLIRGF 424 (487)
Q Consensus 410 -~~~~~~~~~~l~~~~ 424 (487)
...|..+...++...
T Consensus 618 ~~~~d~~vl~~iv~~~ 633 (777)
T KOG1128|consen 618 KKYKDDEVLLIIVRTV 633 (777)
T ss_pred hhcccchhhHHHHHHH
Confidence 111444444444443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-07 Score=74.43 Aligned_cols=164 Identities=14% Similarity=0.111 Sum_probs=119.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
|..+ ..+-..+...|+-+....+..+..... +.+......++....+.|++..|...+.+.... -++|..+
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-------~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~ 136 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAY-------PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEA 136 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccC-------cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhh
Confidence 4444 556667777787777777777766543 556666777788888888888888888887765 3567888
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
|+.+.-+|.+.|+++.|..-|.+..+..+. ++...+.+.-.+.-.|+.+.|..++......+.. |..+-..+......
T Consensus 137 ~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~ 214 (257)
T COG5010 137 WNLLGAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGL 214 (257)
T ss_pred hhHHHHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhh
Confidence 888888888888888888888887776333 5566777777788888888888888877766332 66667777777788
Q ss_pred CCCHhHHHHHHHHHH
Q 011362 217 TGRVNHAKELFVSME 231 (487)
Q Consensus 217 ~~~~~~a~~~~~~~~ 231 (487)
.|+++.|..+...-.
T Consensus 215 ~g~~~~A~~i~~~e~ 229 (257)
T COG5010 215 QGDFREAEDIAVQEL 229 (257)
T ss_pred cCChHHHHhhccccc
Confidence 888888887765543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=6e-08 Score=78.12 Aligned_cols=119 Identities=11% Similarity=0.080 Sum_probs=85.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH-HhcCC
Q 011362 36 ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL-CKEGF 114 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 114 (487)
.++.++++..++..++.+ +.+...|..+...|...|++++|...|++..+.. |.+...+..+..++ ...|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-------P~~~~~~~~lA~aL~~~~g~ 123 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-------GENAELYAALATVLYYQAGQ 123 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCC
Confidence 566677777777776664 5667777777777777788888877777777765 55677777777653 55565
Q ss_pred --hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 115 --VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 115 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
.++|.+++++..+.+ +-+..++..+...+.+.|++++|+..|+++.+.
T Consensus 124 ~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 124 HMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 477777777777764 236667777777777778888888888777765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.6e-07 Score=77.91 Aligned_cols=189 Identities=10% Similarity=-0.039 Sum_probs=129.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV---FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
.....+..++..+...|++++|...|+++.... +.+. .++..+..++...|++++|+..++++.+..+.. +.
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~----~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNH----PD 105 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----Cc
Confidence 346778888999999999999999999998864 2222 467788899999999999999999999876210 11
Q ss_pred chHHHHHHHHHHHhc--------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh
Q 011362 98 NTVTYTTIIDGLCKE--------GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV 169 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 169 (487)
...++..+..++... |+.+.|.+.++.+.... +-+...+..+...... .....
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~~----------~~~~~-------- 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDYL----------RNRLA-------- 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHHH----------HHHHH--------
Confidence 122566666666654 77889999999988763 2222233222211100 00000
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGV--RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
.....+...+.+.|++.+|...++....... +.....+..+..++...|++++|..+++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 0112455678888888888888888877532 123567778888888888888888888777654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.8e-05 Score=68.23 Aligned_cols=174 Identities=12% Similarity=0.126 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 290 VERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEF-DIRAYNSLIDGLCKSGRLEIALELFR 368 (487)
Q Consensus 290 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (487)
.+.....+++++......-..+|...+..-.+..-+..|..+|.++.+.+..+ ++.+.++++..|+ .++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence 55666666666554222223467777887778888999999999998776555 6777788887766 578899999998
Q ss_pred hccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhc---
Q 011362 369 SLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN--VITFDMLIRGFIRINEPSKVIELLHKMKEI--- 443 (487)
Q Consensus 369 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 443 (487)
.-... ...++.--...+..+...++-..|..+|++....++.|+ ..+|..++.-=..-|+...+.++-+++...
T Consensus 426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 76554 233444456677778888888999999999988766655 478999998888889999998888887642
Q ss_pred CCCCCHHHHHHHHHHHHhcccc
Q 011362 444 NVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
...+....-..+++.|.=.+..
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~ 526 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLY 526 (656)
T ss_pred hhcCCCChHHHHHHHHhhcccc
Confidence 1233334455556666555554
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.3e-07 Score=72.21 Aligned_cols=124 Identities=15% Similarity=0.097 Sum_probs=76.2
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH-HccCC--HHHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL-CNDGQ--MDKA 398 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A 398 (487)
.++.+++...++.....+ +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 445556666666665554 5566666666667777777777777776666543 33555666666553 45555 3677
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 011362 399 RDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA 449 (487)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 449 (487)
..++++..+.+.. +...+..+...+...|++++|...|+++++.. +|+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~ 178 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRV 178 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCc
Confidence 7777777665322 45566666666667777777777777776654 3443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.90 E-value=9e-07 Score=71.02 Aligned_cols=164 Identities=13% Similarity=0.079 Sum_probs=105.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 98 NTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
+... ..+-..+...|+-+....+....... .+.+....+.++....+.|++..|...+.+.... -++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHH
Confidence 3444 55556666667766666666654432 2334455555677777777777777777777654 3446677777777
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG 257 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (487)
+|.+.|+++.|..-|.+..+... -++...+.+.-.+.-.|+.+.|..++......+ +.+...-..+.......|+++.
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAP-NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhcc-CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHH
Confidence 77777777777777777666522 255666667777777777777777777766553 3356666667777777777777
Q ss_pred HHHHHHHHH
Q 011362 258 ALSLYSEML 266 (487)
Q Consensus 258 a~~~~~~~~ 266 (487)
|..+...-.
T Consensus 221 A~~i~~~e~ 229 (257)
T COG5010 221 AEDIAVQEL 229 (257)
T ss_pred HHhhccccc
Confidence 776665443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.2e-07 Score=69.87 Aligned_cols=108 Identities=14% Similarity=-0.014 Sum_probs=77.4
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 9 VVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
.+|+++++.+ |+ .+..+...+...|++++|...|+++.... +.+...+..+..++...|++++|...|+.....+
T Consensus 14 ~~~~~al~~~--p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLSVD--PE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHHcC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 4566666553 22 24456677777788888888888777664 4566677777777778888888888888877765
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|.+...+..+..++...|++++|...|+.....
T Consensus 89 -------p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 89 -------ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567777777777777788888888888777765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.6e-06 Score=73.00 Aligned_cols=189 Identities=11% Similarity=-0.077 Sum_probs=130.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 011362 56 PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV 135 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 135 (487)
.....+..++..+...|+++.|...|+++....+. .+.....+..+..++...|++++|...++.+.+.... +..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~ 105 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF----SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-HPD 105 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-CCc
Confidence 34566778888899999999999999998886521 0112356788888999999999999999999876321 222
Q ss_pred ---hHHHHHHHHHhc--------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 011362 136 ---TYTSVIRGFCYA--------KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDA 204 (487)
Q Consensus 136 ---~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 204 (487)
++..+..++... |++++|.+.++.+....+. +...+..+..... ... .. .
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~------~~--------~ 166 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRN------RL--------A 166 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHH------HH--------H
Confidence 455566666554 6788899999888775322 2222222111100 000 00 0
Q ss_pred HHHHHHHHHHHcCCCHhHHHHHHHHHHHcC--CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMG--CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.....+...+.+.|++++|...++.+.+.. .+.....+..+..++...|++++|...++.+...
T Consensus 167 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 167 GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 111245677899999999999999998763 1234578889999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=5e-06 Score=80.61 Aligned_cols=138 Identities=10% Similarity=-0.008 Sum_probs=83.3
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc-------
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFG------- 92 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------- 92 (487)
+.+...+..|+..+...+++++|+++.+...+.. +-....|..++..+.+.+++.++.-+ .+...-+.-.
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 3468889999999999999999999999877763 33334455555577777776665554 2222210000
Q ss_pred -----cccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 93 -----VVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 93 -----~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...+.+..++..++.+|-+.|+.++|..+|+++.+.. +-++.+.+.+...|... ++++|.+++.+...
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~ 177 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY 177 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence 0001122445555566666666666666666666654 33556666666666666 66666666655544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.00017 Score=68.22 Aligned_cols=220 Identities=19% Similarity=0.190 Sum_probs=113.9
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIK--GLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
+++..|++....+++.. |+... ..++. .+.+.|+.++|..+++.....+ ..|..+...+-..|...++.++|..
T Consensus 23 ~qfkkal~~~~kllkk~--Pn~~~-a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKH--PNALY-AKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HHHHHHHHHHHHHHHHC--CCcHH-HHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45666777777776663 34332 22222 2456677777776666655444 2355666666677777777777777
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC-C---------
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK-D--------- 149 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------- 149 (487)
+|+.+.+.. |+......+..+|.+.+++.+-.++=-++-+. .+-+...|-.++..+...- .
T Consensus 99 ~Ye~~~~~~--------P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~ 169 (932)
T KOG2053|consen 99 LYERANQKY--------PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPIL 169 (932)
T ss_pred HHHHHHhhC--------CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchh
Confidence 777777654 44555566666666666554433332222221 2223344434444433221 1
Q ss_pred hhhHHHHHHHHHHcC-CCCChhhHHHHHHHHHhCCChHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHH
Q 011362 150 WNEAKRLFIEMMDQG-VQPNVVTFNVIMDELCKNGKMDEASRLLD-LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 227 (487)
Q Consensus 150 ~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (487)
..-|.+.++.+.+.+ .--+..-.......+...|++++|+.++. ...+.-...+...-+.-+..+...+++.+..++-
T Consensus 170 l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~ 249 (932)
T KOG2053|consen 170 LALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELS 249 (932)
T ss_pred HHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHH
Confidence 122344444444432 11111222223334455666777777763 2333222334444445556666667777777777
Q ss_pred HHHHHcC
Q 011362 228 VSMESMG 234 (487)
Q Consensus 228 ~~~~~~~ 234 (487)
.++...+
T Consensus 250 ~~Ll~k~ 256 (932)
T KOG2053|consen 250 SRLLEKG 256 (932)
T ss_pred HHHHHhC
Confidence 6666664
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.78 E-value=9.9e-06 Score=65.19 Aligned_cols=258 Identities=15% Similarity=0.091 Sum_probs=167.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
|+...|+ ++.+.-.|++..++..-+..... +.++..-..+.++|...|++...+.- +.... .+...
T Consensus 8 ~~d~LF~--iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-------~~~lq 73 (299)
T KOG3081|consen 8 PEDELFN--IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVISE---IKEGK-------ATPLQ 73 (299)
T ss_pred cchhHHH--HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccccc---ccccc-------CChHH
Confidence 4445555 46777889999988877665543 24444455567788888876544332 22211 23344
Q ss_pred HHHHHHHHHHhcCChhHH-HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKA-KELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 179 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (487)
.+..+......-++.+.- .++.+.+.......+......-+..|+..+++++|++...... +......=...+
T Consensus 74 Avr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~ 147 (299)
T KOG3081|consen 74 AVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQIL 147 (299)
T ss_pred HHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHH
Confidence 444444444444444433 3445555554443343444445567888999999999887622 333333444566
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCH
Q 011362 180 CKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC----LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEI 255 (487)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 255 (487)
.+..+++-|.+.++.|.+.. +..|.+.|..++. ..+.+.+|.-+|+++.+. .+|++.+.+..+.++...|++
T Consensus 148 lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 148 LKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCH
Confidence 77788899999999998752 5566666666554 445788899999998764 378888899999999999999
Q ss_pred hHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 011362 256 EGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVER-AFKLFDEMQRN 303 (487)
Q Consensus 256 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 303 (487)
++|..+++..+..... ++.+...++.+....|...+ ..+.+.++...
T Consensus 224 eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999887554 66666666666666665533 44455555554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.77 E-value=0.00018 Score=68.02 Aligned_cols=462 Identities=14% Similarity=0.089 Sum_probs=243.0
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+|+.++|..+++.....+.. |..+...+-.+|...|+.++|..+|+++... .|+......+..+|.+.+++.+-.+.
T Consensus 56 ~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQka 132 (932)
T KOG2053|consen 56 LGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKA 132 (932)
T ss_pred hcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999988777543 8888999999999999999999999999876 56777788888899999888765544
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcC-C---------hhHHHHHHHHHHhCC-CCCCHhhHHHHHHHHHhcCC
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG-F---------VDKAKELLLQMKDKN-IKPNVVTYTSVIRGFCYAKD 149 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 149 (487)
--++-+. .|.++..|-.+++...+.- . ..-|.+.++.+.+.+ .--+..-...-.......|+
T Consensus 133 a~~LyK~-------~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k 205 (932)
T KOG2053|consen 133 ALQLYKN-------FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGK 205 (932)
T ss_pred HHHHHHh-------CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhccc
Confidence 4444443 3555666666666555432 1 234556666666553 11122222233344556889
Q ss_pred hhhHHHHHH-HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-----HHHHHHH--------HH
Q 011362 150 WNEAKRLFI-EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFT-----YNTLLDG--------FC 215 (487)
Q Consensus 150 ~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~--------~~ 215 (487)
+++|..++. ...+.-...+...-+.-+..+...+++.+..++-.++...|.. |-.+ +..+-.. +.
T Consensus 206 ~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D-dy~~~~~sv~klLe~~~~~~a~~~~s 284 (932)
T KOG2053|consen 206 YQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND-DYKIYTDSVFKLLELLNKEPAEAAHS 284 (932)
T ss_pred HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc-chHHHHHHHHHHHHhcccccchhhhh
Confidence 999999984 3333323334444455667788889999999998888887543 2111 1111111 11
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH---HccCCHhHHHHHHHHHHHCC------C-----ccChhhHHHHH
Q 011362 216 LTGRVNHAKELFVSMESMGCKHTVFSYSILINGY---CKNKEIEGALSLYSEMLSKG------I-----KPDVVIHNTLF 281 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~------~-----~~~~~~~~~l~ 281 (487)
..+..+...+...+..... ....|-+-+.++ ..-|+.+++...|-+-.... + ..+..-...++
T Consensus 285 ~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~~~y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~ 361 (932)
T KOG2053|consen 285 LSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEMLSYYFKKFGDKPCCAIDLNHYLGHLNIDQLKSLM 361 (932)
T ss_pred hhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHHHHHHHHhCCCcHhHhhHHHhhccCCHHHHHHHH
Confidence 1122333333333322221 111222222222 23466666544332211100 0 00000011111
Q ss_pred HHHH------------------------hcCC-----HHHHHHHHHHHH---HcC------CCCcH---------HhHHH
Q 011362 282 VGLF------------------------EIHQ-----VERAFKLFDEMQ---RNG------VAADT---------WTYRT 314 (487)
Q Consensus 282 ~~~~------------------------~~~~-----~~~a~~~~~~~~---~~~------~~~~~---------~~~~~ 314 (487)
..+. ..|. .+....++.++. +.| .-|+. .+.+.
T Consensus 362 ~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~ 441 (932)
T KOG2053|consen 362 SKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNH 441 (932)
T ss_pred HHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHH
Confidence 1111 1121 122222222221 112 12221 23355
Q ss_pred HHHHHHhCCCHh---HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc
Q 011362 315 FIDGLCKNGYIV---EAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN 391 (487)
Q Consensus 315 l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 391 (487)
++..+-+.++.. +|+-+++...... +.+..+--.++..|.-.|-+..|.++|..+.-.++..|..-| .+.+.+..
T Consensus 442 Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh-~~~~~~~t 519 (932)
T KOG2053|consen 442 LIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGH-LIFRRAET 519 (932)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchH-HHHHHHHh
Confidence 666777777654 4555555555443 445555567788888888888888888877655444443322 23344555
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH---HHHHHhcCCCCCHHHHHHHHHHHHhcccc---
Q 011362 392 DGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIEL---LHKMKEINVMPDASIVSIVVDLLAKNEIS--- 465 (487)
Q Consensus 392 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--- 465 (487)
.|++..+...++...+.--..-..+- -++....+.|.+.+..++ -++|.......-..+-+..++.++..++.
T Consensus 520 ~g~~~~~s~~~~~~lkfy~~~~kE~~-eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~ 598 (932)
T KOG2053|consen 520 SGRSSFASNTFNEHLKFYDSSLKETP-EYIALAYRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQL 598 (932)
T ss_pred cccchhHHHHHHHHHHHHhhhhhhhH-HHHHHHHHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 67777777777665542100011122 223333456666554433 23333222222233445555555555555
Q ss_pred cccccccccchhhh
Q 011362 466 LNSLPSFTVHEQQE 479 (487)
Q Consensus 466 ~~~~~~~~~~~~~~ 479 (487)
...++.+...|..+
T Consensus 599 ~~~~~~~~l~~~e~ 612 (932)
T KOG2053|consen 599 LKLLESMKLPPSED 612 (932)
T ss_pred HHHHhccccCcchh
Confidence 34444444444333
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.4e-07 Score=68.20 Aligned_cols=91 Identities=10% Similarity=-0.095 Sum_probs=42.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 011362 350 LIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINE 429 (487)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 429 (487)
+...+...|++++|...|+.+.... +.+...|..+..++...|++++|...|+++.... +.+...+..+..++...|+
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~ 107 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGE 107 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCC
Confidence 3444444455555555554444432 2334444444444555555555555555554432 1134444444444445555
Q ss_pred hhHHHHHHHHHHh
Q 011362 430 PSKVIELLHKMKE 442 (487)
Q Consensus 430 ~~~a~~~~~~~~~ 442 (487)
+++|...+++.++
T Consensus 108 ~~eAi~~~~~Al~ 120 (144)
T PRK15359 108 PGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-05 Score=78.24 Aligned_cols=59 Identities=15% Similarity=0.175 Sum_probs=27.2
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (487)
.+..++.+|-+.|+.++|..+|+++++.++ -++.+.+.++-.|... +.++|..++.++.
T Consensus 118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~-~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 118 ALRTLAEAYAKLNENKKLKGVWERLVKADR-DNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 444444444445555555555555444432 2444444444444444 4444444444433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.77 E-value=5.3e-07 Score=68.50 Aligned_cols=111 Identities=16% Similarity=0.080 Sum_probs=80.6
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 9 VVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..|++++... |.+......++..+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|...++...+.+
T Consensus 4 ~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3566666664 3345556667777778888888888888877764 4566677777777778888888888888777765
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+.+...+..+..++...|++++|...|+...+.
T Consensus 82 -------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -------PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 556677777777777888888888888777765
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.1e-05 Score=64.47 Aligned_cols=189 Identities=13% Similarity=0.072 Sum_probs=109.1
Q ss_pred cCCCHhHHHHHHHHHHHc---C-CCCCHh-hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCH
Q 011362 216 LTGRVNHAKELFVSMESM---G-CKHTVF-SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQV 290 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (487)
...+.++..+++..+... | ..++.+ .|..++.+....|+.+.|..+++++...- +.+..+...-...+...|++
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 344566666666666432 2 233332 23444555556677777777777766652 22333333333344556777
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhc
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSL 370 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 370 (487)
++|.++++.+.+.+ +.|..++..-+...-..|..-+|++-+....+. +..|...|..+...|...|++++|.-.++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 77777777776654 445555555555555666666666666666653 3567777777777777777777777777776
Q ss_pred cCCCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhC
Q 011362 371 PCGVLVPNVVTYSIMIGGLCNDG---QMDKARDLFLDMEEN 408 (487)
Q Consensus 371 ~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~ 408 (487)
.-.. |-++..+..+...+.-.| +..-|.++|.+..+.
T Consensus 181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 6432 334444455555444333 455566666666663
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-05 Score=63.04 Aligned_cols=119 Identities=14% Similarity=0.115 Sum_probs=56.7
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (487)
.+.+..+.+-|...+++|.+.. +-.+.+.|..+|.+ .+.+..|.-+|+++.+. .+|+..+.+..+.++...|
T Consensus 146 I~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~ 221 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLG 221 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhc
Confidence 3444455555555555555321 23344444444432 23355555555555543 2555555555555555555
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSK-VIELLHKMK 441 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~ 441 (487)
++++|..+++++...... ++.++..++-.-...|...+ ..+.+.+++
T Consensus 222 ~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 222 RYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 566665555555554322 44444444433334443322 233444444
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=1e-05 Score=77.64 Aligned_cols=161 Identities=11% Similarity=0.035 Sum_probs=111.4
Q ss_pred ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHH
Q 011362 271 KPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSL 350 (487)
Q Consensus 271 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 350 (487)
..+...+..|.....+.|.+++|..+++.+.+.. +.+......++..+.+.+++++|...++...... +.+......+
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 3456777777788888888888888888887752 3334566667777788888888888888887665 5566677777
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 011362 351 IDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEP 430 (487)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 430 (487)
..++.+.|++++|..+|+++...+ +.+..++..+..++...|+.++|...|++..+.. .|....|+.++ ++.
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~------~~~ 232 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL------VDL 232 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH------HHH
Confidence 777888888888888888877632 3446677777778888888888888888887652 23344444333 233
Q ss_pred hHHHHHHHHHH
Q 011362 431 SKVIELLHKMK 441 (487)
Q Consensus 431 ~~a~~~~~~~~ 441 (487)
..-..+++++.
T Consensus 233 ~~~~~~~~~~~ 243 (694)
T PRK15179 233 NADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHcC
Confidence 44455566655
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.8e-06 Score=81.37 Aligned_cols=136 Identities=10% Similarity=0.065 Sum_probs=115.3
Q ss_pred CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc
Q 011362 19 FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 19 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
.+.++..+..|.....+.|.+++|..+++.+.+.. +.+......++.++.+.+++++|+..+++..... |.+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-------p~~ 153 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-------SSS 153 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-------CCC
Confidence 35568888889999999999999999999998874 4455677788889999999999999999999876 677
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
......+..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|++..+.
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888999999999999999999998743 345778888899999999999999999998765
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=4.9e-08 Score=52.58 Aligned_cols=31 Identities=45% Similarity=0.868 Sum_probs=14.0
Q ss_pred CCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011362 375 LVPNVVTYSIMIGGLCNDGQMDKARDLFLDM 405 (487)
Q Consensus 375 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (487)
+.||..+|+.++.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444443
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.7e-06 Score=73.03 Aligned_cols=131 Identities=11% Similarity=-0.007 Sum_probs=91.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+......+...|++++|+..++.++... +.|+..+......+.+.++.++|.+.++++.... |......
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-------P~~~~l~ 377 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALALD-------PNSPLLQ 377 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------CCccHHH
Confidence 3344445555667788888888888877652 3444455566677778888888888888877764 3346666
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
-.+..+|.+.|++.+|+.+++..... .+-++..|..|.++|...|+..++.....+...
T Consensus 378 ~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 378 LNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 77777788888888888887777665 345777788888888888777777776666554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.3e-08 Score=51.89 Aligned_cols=34 Identities=29% Similarity=0.639 Sum_probs=31.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 408 NAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
+|+.||..+|+.++.+|++.|+.++|.+++++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.6e-05 Score=61.01 Aligned_cols=190 Identities=11% Similarity=0.111 Sum_probs=119.0
Q ss_pred hcCCHHHHHHHHHHHHhc---C-CCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 35 AESRIMEAAALFTKLRVF---G-CEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
...+.++.++++..++.. | ..++.. .+..++-+....|+.+.|..+++.+...- |.+...-..-...+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-------p~S~RV~~lkam~l 96 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-------PGSKRVGKLKAMLL 96 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-------CCChhHHHHHHHHH
Confidence 445666666666665543 2 234443 34455566667777777877777776653 33333333333344
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 189 (487)
-..|++++|.++++.+.+.+ +.|..++..-+...-..|+-.+|++-+....+. +..|...|..+...|...|++++|.
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~ 174 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAA 174 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHH
Confidence 55677788888888777764 345556655555555667777777777777665 4447777888888888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CHhHHHHHHHHHHHcC
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKELFVSMESMG 234 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~ 234 (487)
-.+++++-.. +.++..+..+...+.-.| +...+.+.|.+..+..
T Consensus 175 fClEE~ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 175 FCLEELLLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 8887776652 235555666665554444 4556677777776654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.1e-06 Score=64.22 Aligned_cols=110 Identities=11% Similarity=0.007 Sum_probs=75.5
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 45 LFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQ 124 (487)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 124 (487)
.++++.... +.+......+...+...|++++|...|+.+...+ +.+...+..+..++...|++++|..+++.
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~ 76 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-------PYNSRYWLGLAACCQMLKEYEEAIDAYAL 76 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555442 2234455566677777778888888887777655 55667777777777777778888877777
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 125 MKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
....+ +.+...+..+..++...|++++|...|+...+.
T Consensus 77 ~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 77 AAALD-PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHhcC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 76653 345666677777777777788887777777664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.6e-05 Score=67.04 Aligned_cols=154 Identities=13% Similarity=0.068 Sum_probs=113.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK 356 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (487)
..-....+...+++++|+..+..+... .+.|+.......+.+.+.++..+|.+.++++.... |........+..+|.+
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~ 386 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHh
Confidence 333444566788888888888888776 34556666677778888899999999998888764 3336667778888888
Q ss_pred cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 011362 357 SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
.|++.+|+.+++...... +.++..|..|..+|...|+..++..-. ...+...|+++.|...
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~------------------AE~~~~~G~~~~A~~~ 447 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR------------------AEGYALAGRLEQAIIF 447 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH------------------HHHHHhCCCHHHHHHH
Confidence 999999988888877653 667888888999998888877766543 3345667788888888
Q ss_pred HHHHHhcCCCCCHHHH
Q 011362 437 LHKMKEINVMPDASIV 452 (487)
Q Consensus 437 ~~~~~~~~~~~~~~~~ 452 (487)
+.+..+.. +++...|
T Consensus 448 l~~A~~~~-~~~~~~~ 462 (484)
T COG4783 448 LMRASQQV-KLGFPDW 462 (484)
T ss_pred HHHHHHhc-cCCcHHH
Confidence 87777543 3444444
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.8e-05 Score=60.66 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=82.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc--
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD---VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN-- 98 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-- 98 (487)
..|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+....+ .+.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~------d~~l~ 84 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAP------DPELK 84 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCC------CHHHH
Confidence 3455555554 4777777777787777763 222 22334455677778888888888888777541 121
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
......+..++...|++++|+..++..... ......+.....++.+.|++++|...|+..
T Consensus 85 ~~a~l~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 85 PLARLRLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 234455677777788888888887664433 234456666777788888888888877654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.5e-05 Score=70.61 Aligned_cols=120 Identities=19% Similarity=0.171 Sum_probs=61.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|+..+...++++.|+.+|+++.+.. |+. ...+++.+...++-.+|++++.+..+.. |.+......-...
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-------p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-------PQDSELLNLQAEF 243 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 3444445555555666655555442 332 2234455555555555555555555443 3444445555555
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
+.+.++++.|+++.+++.+.. |-+..+|..|..+|...|+++.|+..+..+
T Consensus 244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 555555555555555555541 223345555555555555555555555543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.7e-05 Score=59.61 Aligned_cols=116 Identities=13% Similarity=0.071 Sum_probs=64.8
Q ss_pred CCCHhHHHHHHHHHHHcCCCCC---hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH--HHHHHHHHHHHccCCHH
Q 011362 322 NGYIVEAVELFHTLRILKCEFD---IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV--VTYSIMIGGLCNDGQMD 396 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~ 396 (487)
.++...+...++.+.... +.+ ....-.+...+...|++++|...|+.+......|+. .....+..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 566666666666666543 222 122333445566667777777777766664311221 23344556666677777
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 397 KARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKM 440 (487)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 440 (487)
+|+..++..... ...+..+.....++.+.|++++|...|++.
T Consensus 103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 777776553322 223445556666677777777777766654
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.33 E-value=7.8e-05 Score=66.22 Aligned_cols=122 Identities=15% Similarity=0.157 Sum_probs=62.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
.|+..+...++++.|+.+++++.+.. |+ ....+++.+...++-.+|.+++++.++.. +.+..........+.+.+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555555555555555442 22 23334455555555555555555555432 224444444445555555
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 219 RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
+++.|+.+.+++.... |.+..+|..|..+|.+.|+++.|+..+..+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 5666666655555543 3344455556666666666666655555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.4e-05 Score=71.16 Aligned_cols=122 Identities=10% Similarity=0.127 Sum_probs=77.2
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC--CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV--LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFD 418 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 418 (487)
+.+......++..+....+.+.+..++.+..... ...-..|..++++.|.+.|..++++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4445555555666555566666666666555431 11112344567777777777777777777777777777777777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 011362 419 MLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKN 462 (487)
Q Consensus 419 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (487)
.|+..+.+.|++..|.++.-.|...+...++.+....+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777766555555666666666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.3e-06 Score=59.55 Aligned_cols=82 Identities=16% Similarity=0.149 Sum_probs=64.2
Q ss_pred CCccchHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFT-PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|+++.|+.++++++...+. ++...+..+..+|.+.|++++|+.++++ ...+ +.+......+..++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 48899999999999998742 2455666789999999999999999998 4332 2334555567899999999999999
Q ss_pred HHHHH
Q 011362 80 LFEEM 84 (487)
Q Consensus 80 ~~~~~ 84 (487)
+|++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.6e-05 Score=55.11 Aligned_cols=100 Identities=12% Similarity=-0.038 Sum_probs=66.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCE--PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
++..++..+...|++++|.+.|+.+...... .....+..+..++.+.|+++.|.+.|+.+....+. .+....++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~----~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK----SPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC----CCcccHHH
Confidence 4556677777788888888888877765311 11345566777777788888888888877764421 11224566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..+..++...|+.++|...++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 67777777777777777777777765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.22 E-value=3e-05 Score=54.60 Aligned_cols=94 Identities=16% Similarity=0.087 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
+..++..+...|++++|+..++++.+.. +.+...+..+...+...+++++|.+.++...... +.+...+..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-------PDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------CcchhHHHHH
Confidence 4455666666777777777777766553 3333555566666666677777777777666654 3344566666
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 011362 106 IDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
...+...|+.+.|...+....+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 6666666666666666666554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.7e-06 Score=56.85 Aligned_cols=81 Identities=16% Similarity=0.121 Sum_probs=57.2
Q ss_pred cCCHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC
Q 011362 36 ESRIMEAAALFTKLRVFGCE-PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF 114 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (487)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..++++ .+.+ +.+......++.++.+.|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-------~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-------PSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-------HCHHHHHHHHHHHHHHTT-
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-------CCCHHHHHHHHHHHHHhCC
Confidence 57888888888888877421 2444566678888888888888888887 3322 3344555566888888888
Q ss_pred hhHHHHHHHH
Q 011362 115 VDKAKELLLQ 124 (487)
Q Consensus 115 ~~~a~~~~~~ 124 (487)
+++|++++++
T Consensus 74 y~eAi~~l~~ 83 (84)
T PF12895_consen 74 YEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 8888888875
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.8e-05 Score=57.01 Aligned_cols=97 Identities=14% Similarity=-0.032 Sum_probs=56.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
.....+...+...|++++|.++|+-+.... +-+..-|..|..++-..|++++|+..|......+ +.++..+.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-------~ddp~~~~ 107 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-------IDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCchHHH
Confidence 334444555556666666666666655543 3344445556666666666666666666665554 44555666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
.+..++...|+.+.|.+.|+..+..
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6666666666666666666655443
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0053 Score=57.00 Aligned_cols=203 Identities=12% Similarity=0.057 Sum_probs=115.9
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH----------HHHhcCChhHHHHHHHH
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID----------GLCKEGFVDKAKELLLQ 124 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------~~~~~g~~~~a~~~~~~ 124 (487)
.|.+..|..+.......-.++.|...|-+...-. .......|-. .-.--|++++|.++|-.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~---------Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYA---------GIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcccc---------chhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 6888899999888888888888888877655432 1211111111 11224788888888877
Q ss_pred HHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 011362 125 MKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD 203 (487)
Q Consensus 125 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 203 (487)
+-+++ ..+..+.+.|+|-...++++.--.. .-..-...|+.+...++....+++|.++|..-..
T Consensus 760 ~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------ 824 (1189)
T KOG2041|consen 760 ADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------ 824 (1189)
T ss_pred cchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 76542 2445566677777776666431100 0001123566666667777777777777654321
Q ss_pred HHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHH
Q 011362 204 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVG 283 (487)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 283 (487)
. ...+.++.+..++++-+.+...+ +.+....-.+..++.+.|.-++|.+.+-+... | ...+..
T Consensus 825 ~---e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~t 887 (1189)
T KOG2041|consen 825 T---ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHT 887 (1189)
T ss_pred h---HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHH
Confidence 1 12345555555555544443332 44555666677777777777777766543211 1 233455
Q ss_pred HHhcCCHHHHHHHHH
Q 011362 284 LFEIHQVERAFKLFD 298 (487)
Q Consensus 284 ~~~~~~~~~a~~~~~ 298 (487)
|...++|.+|.++-.
T Consensus 888 Cv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 888 CVELNQWGEAVELAQ 902 (1189)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666667766666544
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.1e-05 Score=55.81 Aligned_cols=98 Identities=8% Similarity=-0.089 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
......+...+...|++++|.++|+.+...+ +.+..-|..|..++-..|++++|+..|......+. -++..+
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-------p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~ 106 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-------AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAP 106 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHH
Confidence 3345556666778888888888888887766 66777788888888888888888888888777653 467777
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
..+..++...|+.+.|.+.|+..+..
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 77888888888888888888877654
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.002 Score=55.85 Aligned_cols=258 Identities=13% Similarity=0.023 Sum_probs=117.1
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
+|..|+..+..+++..+. ++..|..-+..+...|++++|.--.+.-.+.. +-.........+++...++..+|.+.++
T Consensus 64 ~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 64 TYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred hHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhHHHHHHHHHhh
Confidence 455677777777776533 45555555666666677776665555444331 1111122223333333333333333332
Q ss_pred H------------HHhCCCCCccccccchHHHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011362 83 E------------MANGNGEFGVVCEPNTVTYTTI-IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD 149 (487)
Q Consensus 83 ~------------~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 149 (487)
. ....-+.. .-+|.-..+..+ ..++.-.|+.+.|.++--.+++... .+......-..++...++
T Consensus 142 ~~~~~~~anal~~~~~~~~s~--s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~-~n~~al~vrg~~~yy~~~ 218 (486)
T KOG0550|consen 142 SKQAYKAANALPTLEKLAPSH--SREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA-TNAEALYVRGLCLYYNDN 218 (486)
T ss_pred hhhhhHHhhhhhhhhcccccc--cCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc-chhHHHHhcccccccccc
Confidence 1 11100000 001222223222 2344456666666666555555421 122222222334445566
Q ss_pred hhhHHHHHHHHHHcCCCCChhh-------------HHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHH
Q 011362 150 WNEAKRLFIEMMDQGVQPNVVT-------------FNVIMDELCKNGKMDEASRLLDLMIQHG---VRPDAFTYNTLLDG 213 (487)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~ 213 (487)
.+.+...|.+.+..+ |+-.. +..-..-..+.|.+..|.+.|.+.+... ..++...|......
T Consensus 219 ~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v 296 (486)
T KOG0550|consen 219 ADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALV 296 (486)
T ss_pred hHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhh
Confidence 677777776666543 22111 1111223345556666666665555432 23344445555555
Q ss_pred HHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 214 FCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
..+.|+..+|+.--+...+.+ +.-...+..-..++...++|++|.+-+++..+.
T Consensus 297 ~~rLgrl~eaisdc~~Al~iD-~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 297 NIRLGRLREAISDCNEALKID-SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred hcccCCchhhhhhhhhhhhcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 555666666655555554432 111222233334444555566666665555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00019 Score=56.82 Aligned_cols=93 Identities=12% Similarity=0.028 Sum_probs=74.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD--VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
...+..+...+...|++++|+..|+++.+....+. ...+..+..++.+.|++++|...+++..+.. +.+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~ 107 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-------PKQPS 107 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHH
Confidence 55678888899999999999999999987643322 3578889999999999999999999999875 55677
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELL 122 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~ 122 (487)
.+..+..++...|+...+..-+
T Consensus 108 ~~~~lg~~~~~~g~~~~a~~~~ 129 (172)
T PRK02603 108 ALNNIAVIYHKRGEKAEEAGDQ 129 (172)
T ss_pred HHHHHHHHHHHcCChHhHhhCH
Confidence 7888888888888765544433
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.8e-05 Score=67.84 Aligned_cols=86 Identities=10% Similarity=-0.048 Sum_probs=78.0
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.++..+ +.+...|..+..+|...|++++|+..+++++... +.+...|..+..+|...|++++|+..
T Consensus 15 ~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~ 92 (356)
T PLN03088 15 DDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAA 92 (356)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 378999999999999987 4578889999999999999999999999999875 55677899999999999999999999
Q ss_pred HHHHHhCC
Q 011362 81 FEEMANGN 88 (487)
Q Consensus 81 ~~~~~~~~ 88 (487)
|+...+..
T Consensus 93 ~~~al~l~ 100 (356)
T PLN03088 93 LEKGASLA 100 (356)
T ss_pred HHHHHHhC
Confidence 99999865
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00012 Score=57.77 Aligned_cols=113 Identities=13% Similarity=0.024 Sum_probs=81.1
Q ss_pred cchHHHHHHHHHhCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHH
Q 011362 4 VSHGFVVLGRILKSCFT-PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP--DVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
+..+...+..+++.... .....|..++..+...|++++|+..|++.......+ ...++..+..++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44555666666533222 236677888899999999999999999998764222 234788899999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHH-------hcCChhHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLC-------KEGFVDKAKELLL 123 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~a~~~~~ 123 (487)
+++..... +.....+..+..++. ..|+++.|...++
T Consensus 95 ~~~Al~~~-------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 95 YFQALERN-------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHhC-------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 99999865 445566677776666 5666654444443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.15 E-value=5.8e-05 Score=67.30 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=81.2
Q ss_pred CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhH
Q 011362 270 IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN--GVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAY 347 (487)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 347 (487)
.+.+......++..+....+.+.+..++-+.... ....-+.+...+++.|...|..++++.++..=...|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 3445556666666666677777777777766654 12222344557777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND 392 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (487)
+.|++.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 777777777777777777777666555555555555444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.1e-05 Score=66.07 Aligned_cols=92 Identities=12% Similarity=-0.017 Sum_probs=71.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
-...+...|++++|++.|+++++.. +.+...|..+..+|...|++++|+..++++.... +.+...|..+..+
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-------P~~~~a~~~lg~~ 79 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-------PSLAKAYLRKGTA 79 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHH
Confidence 3566677788888888888888765 4556677777788888888888888888888765 5567778888888
Q ss_pred HHhcCChhHHHHHHHHHHhC
Q 011362 109 LCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~ 128 (487)
|...|++++|+..|++..+.
T Consensus 80 ~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 80 CMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHhCCHHHHHHHHHHHHHh
Confidence 88888888888888887765
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00025 Score=58.97 Aligned_cols=115 Identities=15% Similarity=0.050 Sum_probs=64.5
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc---CChHHHHHHH
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT---SHTIVALNLF 81 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~ 81 (487)
++...-++.-+..+ |.|...|-.|..+|...|++..|...|.+..+.. ++++..+..+..++..+ ....++..+|
T Consensus 139 ~~l~a~Le~~L~~n-P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 139 EALIARLETHLQQN-PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHhC-CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 34444555555554 3456666666666666666666666666665553 44455555554444322 2234556666
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+++...+ +.++.+...|...+...|++.+|...|+.|.+.
T Consensus 217 ~~al~~D-------~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 217 RQALALD-------PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHhcC-------CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666654 455555555666666666666666666666654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00014 Score=53.58 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=60.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHhhH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIK--PNVVTY 137 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~ 137 (487)
++..++..+.+.|++++|.+.|+.+.+..+. .+.....+..+..++.+.|+++.|...|+.+...... .....+
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPK----STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 4555666667777777777777777654411 0112345556667777777777777777776654211 123455
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
..+..++...|++++|.+.++++.+.
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 66666666777777777777776665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.7e-06 Score=45.08 Aligned_cols=33 Identities=39% Similarity=0.859 Sum_probs=15.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN 413 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 413 (487)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 344444444444444444444444444444443
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0037 Score=54.27 Aligned_cols=267 Identities=12% Similarity=0.015 Sum_probs=146.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
........+.+..++..|+..+..+++.. +.+...|..-+..+...|++++|.--.++-.+..+. .......
T Consensus 51 ~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-------~~k~~~r 122 (486)
T KOG0550|consen 51 EAKEEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-------FSKGQLR 122 (486)
T ss_pred HHHhhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-------ccccccc
Confidence 34445566777888999999999988875 445556666666777778888887776665554421 1223333
Q ss_pred HHHHHHhcCChhHHHHHHH---------------HHHhCCC-CCCHhhHHHH-HHHHHhcCChhhHHHHHHHHHHcCCCC
Q 011362 105 IIDGLCKEGFVDKAKELLL---------------QMKDKNI-KPNVVTYTSV-IRGFCYAKDWNEAKRLFIEMMDQGVQP 167 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (487)
..+++...++..+|.+.++ .+..... +|.-..|..+ ..++.-.++.++|.+.-...++....
T Consensus 123 ~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~- 201 (486)
T KOG0550|consen 123 EGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT- 201 (486)
T ss_pred hhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-
Confidence 3333333333333333322 1111111 1223334333 23455677888887777766664211
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH-------------HHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFT-------------YNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
+......-..++.-.++.+.+...|++.+..+ |+... +..-..-..+.|.+..|.+.|.+.+..+
T Consensus 202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 202 NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNID 279 (486)
T ss_pred hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCC
Confidence 22222222234455667788888887776653 22211 1112233456677777777777776542
Q ss_pred ---CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011362 235 ---CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN 303 (487)
Q Consensus 235 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (487)
..++...|........+.|+..+|+.--......+.. -...+..-..++...++|++|.+-++...+.
T Consensus 280 P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2334455555566666777777777776666553110 1112233334455667777777777766654
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00013 Score=62.67 Aligned_cols=131 Identities=11% Similarity=0.070 Sum_probs=97.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc-cCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR-TSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
.+|..+++...+.+..+.|..+|.++++.+ ..+..+|......-.. .++.+.|.++|+...+. ++.+...|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-------f~~~~~~~ 73 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-------FPSDPDFW 73 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-------HTT-HHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-------CCCCHHHH
Confidence 468888888888888999999999998543 3345556555555333 56667799999998876 47788888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV---VTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
...+..+...|+.+.|..+|++.... ++++. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 74 ~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 74 LEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999998876 33222 37888888888888888888888888764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0066 Score=53.48 Aligned_cols=129 Identities=14% Similarity=0.065 Sum_probs=76.5
Q ss_pred HhcCC-HHHHHHHHHhccCCCCCCcHHHHHHHHH----HHHc---cCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHH
Q 011362 355 CKSGR-LEIALELFRSLPCGVLVPNVVTYSIMIG----GLCN---DGQMDKARDLFLDMEENAVVPN----VITFDMLIR 422 (487)
Q Consensus 355 ~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~ 422 (487)
.+.|. -++|.++++.+.+-. +-|...-|.+.. +|.+ ...+.+-..+-+-+.+.|++|- ...-+.|..
T Consensus 390 W~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaD 468 (549)
T PF07079_consen 390 WEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLAD 468 (549)
T ss_pred HhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHH
Confidence 34444 677888887776531 223333332221 2222 1223333333333445566653 334455554
Q ss_pred H--HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccchhhhhhhhccC
Q 011362 423 G--FIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVHEQQEEVDESNV 486 (487)
Q Consensus 423 ~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 486 (487)
+ +...|++.++.-.-.-+.+ +.|++.+++.++-++....++.+|.+.+...|..++..++++
T Consensus 469 AEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskv 532 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKV 532 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHH
Confidence 4 4467888887766665655 678888888888888888888888888777777666665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.4e-05 Score=52.26 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=61.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV 140 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 140 (487)
+..++..+...|++++|...++.+.+.. +.+...+..+..++...|++++|.+.++...... +.+..++..+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 74 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNL 74 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHH
Confidence 4455666666777777777777776654 3444566667777777777777777777766553 2244566666
Q ss_pred HHHHHhcCChhhHHHHHHHHHH
Q 011362 141 IRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 141 ~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...+...|++++|...+....+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHc
Confidence 6677777777777777766654
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.7e-05 Score=61.20 Aligned_cols=131 Identities=14% Similarity=0.049 Sum_probs=93.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
..-+.+.++|++|+..|.++++.. +-|...|..-..+|.+.|.++.|++-.+.....+ |....+|..|..+|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-------p~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-------PHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-------hHHHHHHHHHHHHH
Confidence 455677889999999999988874 4566667778888889999999988888888876 55678888999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-HhcCChh---hHHHHHHHHHHcCCCCChh
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF-CYAKDWN---EAKRLFIEMMDQGVQPNVV 170 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~---~a~~~~~~~~~~~~~~~~~ 170 (487)
...|++++|++.|++.++. .|+-.+|..=+... -+.+... .+...++-....|..|+..
T Consensus 160 ~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~~ 222 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALEL--DPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDSR 222 (304)
T ss_pred HccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccch
Confidence 9999999999888888875 56666665544433 2333333 4444454444445445543
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.1e-05 Score=43.83 Aligned_cols=32 Identities=34% Similarity=0.571 Sum_probs=16.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEENAVVP 412 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 412 (487)
+|+.++.+|.+.|+++.|..+|+.|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555444
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00092 Score=55.94 Aligned_cols=186 Identities=8% Similarity=-0.038 Sum_probs=114.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHH---HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFT---YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
+...+......+...|++++|++.|+.+....... ... ...++.++.+.+++++|...+++..+..|.. +..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~----~~~ 105 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH----PNI 105 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCC----Cch
Confidence 45555556777788999999999999999874222 222 3467788899999999999999999987531 222
Q ss_pred hHHHHHHHHHHHhcC---------------C---hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 99 TVTYTTIIDGLCKEG---------------F---VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
..++-.++.+....+ + ...|+..|+.+++. -|+. .-..+|...+..+
T Consensus 106 ~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l 170 (243)
T PRK10866 106 DYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFL 170 (243)
T ss_pred HHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHH
Confidence 333333333321111 2 23566677777665 2332 1223333333333
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH--GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
... =...-..+.+.|.+.|.+..|..-++.+++. +.+........+..+|...|..++|......+.
T Consensus 171 ~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 171 KDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 221 0011124566777888888888888887765 222334556667788888888888877766543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.2e-05 Score=44.05 Aligned_cols=34 Identities=29% Similarity=0.572 Sum_probs=32.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH
Q 011362 416 TFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA 449 (487)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 449 (487)
+|+.++.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.02 E-value=1.1e-05 Score=43.78 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=30.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP 56 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 56 (487)
.+|+.++.+|.+.|+++.|.++|+.|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 579999999999999999999999999998876
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0061 Score=51.07 Aligned_cols=56 Identities=7% Similarity=0.061 Sum_probs=25.3
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcC--CCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 011362 140 VIRGFCYAKDWNEAKRLFIEMMDQG--VQPNVVTFNVIMDELCKNGKMDEASRLLDLM 195 (487)
Q Consensus 140 l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 195 (487)
+.+.|.+.|.+..|..-++.+++.- .+........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4444555555555555555554431 1112223334444555555555555444433
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0019 Score=49.37 Aligned_cols=157 Identities=14% Similarity=0.074 Sum_probs=108.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
+..+..+.=|++...+-..+-... .|++.-...|..++...|++.+|...|++..... +..+......+.++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~~--ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~------fA~d~a~lLglA~A 133 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELAI--APTVQNRYRLANALAELGRYHEAVPHYQQALSGI------FAHDAAMLLGLAQA 133 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHhh--chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccc------cCCCHHHHHHHHHH
Confidence 344444555565555444333332 5777777788888899999999999999888755 56778888888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE 187 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (487)
....+++..|...++.+.+... ..++.+...+.+.+...|...+|...|+.....- |+...-......+.+.|+..+
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhH
Confidence 8888999999999888876531 0134455667788888999999999999888763 444443344456667776666
Q ss_pred HHHHHHHH
Q 011362 188 ASRLLDLM 195 (487)
Q Consensus 188 a~~~~~~~ 195 (487)
+..-+..+
T Consensus 212 a~aq~~~v 219 (251)
T COG4700 212 ANAQYVAV 219 (251)
T ss_pred HHHHHHHH
Confidence 55444333
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=62.70 Aligned_cols=129 Identities=16% Similarity=0.093 Sum_probs=71.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh-CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 011362 276 IHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK-NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGL 354 (487)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (487)
+|..++...-+.+..+.|..+|.++.+.+ ..+...|...+..-.. .++.+.|..+|+...+. ++.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45566666666666667777776666432 2233444444443222 44555566666666654 355566666666666
Q ss_pred HhcCCHHHHHHHHHhccCCCCCCcH---HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 355 CKSGRLEIALELFRSLPCGVLVPNV---VTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
...++.+.|..+|++.... +.++. ..|...+..-.+.|+.+.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666666654 23222 3566666655666666666666666655
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.014 Score=54.42 Aligned_cols=176 Identities=14% Similarity=0.104 Sum_probs=105.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH----------HHHHHccCChHHHHHHHHHHHhCCC
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTL----------VNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
.|.+..|..|.......-.++-|...|-+.... +.......| ...-.--|++++|.+++-.+.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 578999999999988888899898888776543 222111111 112233588999999888776654
Q ss_pred CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 011362 90 EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN 168 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 168 (487)
..+..+.+.|++-...++++.--.. .-..-...|+.+...+.....|++|.+.|..--.
T Consensus 765 --------------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------ 824 (1189)
T KOG2041|consen 765 --------------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------ 824 (1189)
T ss_pred --------------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------
Confidence 3455666777777666665421100 0011234678888888888888888887765321
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELF 227 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 227 (487)
....+.++.+..++++...+...+ +-+....-.+..++.+.|.-++|.+.+
T Consensus 825 ---~e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~ 875 (1189)
T KOG2041|consen 825 ---TENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAY 875 (1189)
T ss_pred ---hHhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHH
Confidence 123455555555555555444433 224444555566666666666665554
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00046 Score=59.61 Aligned_cols=138 Identities=12% Similarity=0.049 Sum_probs=64.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE---PD--VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
...|......|...|++++|.+.|.+....... +. ...|.....+|. .+++++|++.+++........|. ...
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G~-~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAGR-FSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcCc-HHH
Confidence 445777777888888888888888887543211 11 112333344443 33666776666665432100000 011
Q ss_pred chHHHHHHHHHHHhc-CChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 98 NTVTYTTIIDGLCKE-GFVDKAKELLLQMKDK----NIK-PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
-...+..+...|... |+++.|.+.|++.... +.+ .-...+..++..+.+.|++++|.++|++...
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 123444455555555 5555555555554321 100 0112334444555555555555555555543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00078 Score=48.80 Aligned_cols=109 Identities=22% Similarity=0.137 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPD--VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|+.++++.....+.. +.+......+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~----~~~~~l~~f~ 81 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDD----ELNAALRVFL 81 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----cccHHHHHHH
Confidence 356667778888888888888887764433 2355667777778888888888888777653110 1123333344
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF 144 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 144 (487)
..++...|+.++|++++-..... +...|..-|..|
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la~----~~~~y~ra~~~y 116 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALAE----TLPRYRRAIRFY 116 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 45667778888888777655432 333444444444
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00047 Score=49.94 Aligned_cols=98 Identities=20% Similarity=0.134 Sum_probs=74.5
Q ss_pred CCccchHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCCh
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD--AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 74 (487)
+|+.++|+.+|++.+..|.... ...+..+...+...|++++|+.++++..... |+ ......+..++...|+.
T Consensus 14 ~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L~~~gr~ 91 (120)
T PF12688_consen 14 LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALALYNLGRP 91 (120)
T ss_pred cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHHCCCH
Confidence 5899999999999999886644 4567788999999999999999999998763 33 22333345577889999
Q ss_pred HHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 75 IVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
++|++.+-.... ++...|..-|..|.
T Consensus 92 ~eAl~~~l~~la----------~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 92 KEALEWLLEALA----------ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHHHH
Confidence 999999877654 23346666666654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0067 Score=52.50 Aligned_cols=95 Identities=11% Similarity=0.056 Sum_probs=40.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----cH-HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC--CCC--hHh
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAA-----DT-WTYRTFIDGLCKNGYIVEAVELFHTLRILKC--EFD--IRA 346 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~--~~~ 346 (487)
+..++..+.+.|++++|..+|+++....... +. ..+...+-++...|++..|...+++.....+ ..+ ...
T Consensus 158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~ 237 (282)
T PF14938_consen 158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF 237 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence 3344445555555555555555554432111 11 1122223344455666666666666553321 111 223
Q ss_pred HHHHHHHHHh--cCCHHHHHHHHHhcc
Q 011362 347 YNSLIDGLCK--SGRLEIALELFRSLP 371 (487)
Q Consensus 347 ~~~l~~~~~~--~g~~~~a~~~~~~~~ 371 (487)
...|+.++-. ...+..+..-|+.+.
T Consensus 238 ~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 238 LEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 4444555432 223445555554444
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00019 Score=59.34 Aligned_cols=104 Identities=13% Similarity=0.132 Sum_probs=88.0
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011362 65 VNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF 144 (487)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 144 (487)
..-+.+.++|++|+..|.++++.. |.|+..|..-..+|++.|.++.|++-.+..+..+ +-...+|..|..+|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~-------P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~ 159 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELD-------PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAY 159 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcC-------CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHH
Confidence 445678999999999999999976 7788899999999999999999999999988864 22566899999999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011362 145 CYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 178 (487)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (487)
...|++++|++.|++.++. .|+-.+|-.=+..
T Consensus 160 ~~~gk~~~A~~aykKaLel--dP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALEL--DPDNESYKSNLKI 191 (304)
T ss_pred HccCcHHHHHHHHHhhhcc--CCCcHHHHHHHHH
Confidence 9999999999999998874 6666666554443
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0014 Score=61.28 Aligned_cols=143 Identities=9% Similarity=-0.009 Sum_probs=90.9
Q ss_pred CCCcHHhHHHHHHHHHh--C---CCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHhcc
Q 011362 305 VAADTWTYRTFIDGLCK--N---GYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS--------GRLEIALELFRSLP 371 (487)
Q Consensus 305 ~~~~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 371 (487)
.+.+...|...+++... . +....|..+|++..+.. |.....+..+..++... .+...+.+..++..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 45566677777665432 2 23667788888887764 33444555444433221 12334444444433
Q ss_pred CC-CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHH
Q 011362 372 CG-VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDAS 450 (487)
Q Consensus 372 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 450 (487)
.. ..+.+...|..+.......|++++|...++++.+.+ |+...|..+...+...|+.++|.+.++++...+ |...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~--P~~p 487 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR--PGEN 487 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCc
Confidence 32 123345667777666667888999999998888854 677788888888888899999998888887743 5544
Q ss_pred HH
Q 011362 451 IV 452 (487)
Q Consensus 451 ~~ 452 (487)
+|
T Consensus 488 t~ 489 (517)
T PRK10153 488 TL 489 (517)
T ss_pred hH
Confidence 44
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00034 Score=48.61 Aligned_cols=79 Identities=18% Similarity=0.325 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCC--------hhhHHHHHHHHHHcCCCCChhhHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNI-KPNVVTYTSVIRGFCYAKD--------WNEAKRLFIEMMDQGVQPNVVTFN 173 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~ 173 (487)
...|..+...+++.....+|+.+++.|+ .|++.+|+.++.+.++..- .-+.+.+|++|+..+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3445556666888888888888888888 7888888888887765432 335566777777777777777777
Q ss_pred HHHHHHHh
Q 011362 174 VIMDELCK 181 (487)
Q Consensus 174 ~l~~~~~~ 181 (487)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 77666543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.6e-05 Score=49.07 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=35.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
.|++++|++.|+.++... |.+..++..++.+|.+.|++++|.++++++...
T Consensus 4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 367777777777777765 336666667777777777777777777777665
|
... |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00094 Score=52.91 Aligned_cols=86 Identities=13% Similarity=-0.007 Sum_probs=43.4
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHH
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFD--IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGG 388 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 388 (487)
.+..+...+...|++++|...|++.......+. ...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 344555555556666666666666554321111 2345555555555666666666665555432 2233444444555
Q ss_pred HHccCCHHH
Q 011362 389 LCNDGQMDK 397 (487)
Q Consensus 389 ~~~~g~~~~ 397 (487)
+...|+...
T Consensus 116 ~~~~g~~~~ 124 (172)
T PRK02603 116 YHKRGEKAE 124 (172)
T ss_pred HHHcCChHh
Confidence 555554433
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.025 Score=53.94 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=49.0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 384 IMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 384 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
-++..+.+..+++++..+.+..-+. ++..|..+++.+.+.+..+.-.+...+.++.=...+...-..+++.+++.+
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~VL~~Lakn~ 785 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLHVLQILAKNG 785 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHHHHHHHhcCC
Confidence 3556677778888888877766543 788888999989888866555554444442211112222345567777777
Q ss_pred cc
Q 011362 464 IS 465 (487)
Q Consensus 464 ~~ 465 (487)
..
T Consensus 786 ~l 787 (933)
T KOG2114|consen 786 TL 787 (933)
T ss_pred ce
Confidence 66
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00054 Score=54.07 Aligned_cols=115 Identities=16% Similarity=-0.014 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhH
Q 011362 39 IMEAAALFTKLRVF-GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDK 117 (487)
Q Consensus 39 ~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 117 (487)
+..+...+..+.+. +.......+..++..+...|++++|+..|++.....+. ......++..+..++...|++++
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~----~~~~~~~~~~lg~~~~~~g~~~e 90 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID----PYDRSYILYNIGLIHTSNGEHTK 90 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc----chhhHHHHHHHHHHHHHcCCHHH
Confidence 44444445454322 11122344566666777778888888887777654310 01123467777777777777888
Q ss_pred HHHHHHHHHhCCCCCCHhhHHHHHHHHH-------hcCChhhHHHHHH
Q 011362 118 AKELLLQMKDKNIKPNVVTYTSVIRGFC-------YAKDWNEAKRLFI 158 (487)
Q Consensus 118 a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~ 158 (487)
|+..++...... +....++..+...+. ..|+++.|...++
T Consensus 91 A~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 91 ALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 877777776542 223444555555554 4555554444333
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.8e-05 Score=48.14 Aligned_cols=55 Identities=16% Similarity=0.065 Sum_probs=48.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+.+.|++++|++.|+++.... +.+..++..++.+|.+.|++++|.++++++....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 357899999999999999885 5578888899999999999999999999999865
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0024 Score=59.82 Aligned_cols=140 Identities=8% Similarity=-0.001 Sum_probs=91.8
Q ss_pred CCCCCCHHhHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc--------CChHHHHHHHHH
Q 011362 17 SCFTPDAVTFTSLIKGLCAE-----SRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT--------SHTIVALNLFEE 83 (487)
Q Consensus 17 ~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~ 83 (487)
...+.+..+|...+++.... ++...|+.+|+++.+.. +.....+..+..++... .+...+.+..++
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 33566788888888875432 23778999999999874 33344454443333221 112334444444
Q ss_pred HHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 84 MANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
...... .+.+...|..+.......|++++|...+++....+ |+...|..+...+...|+.++|.+.+++....
T Consensus 410 a~al~~-----~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 410 IVALPE-----LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhhccc-----CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 333210 13455677777766777788888888888888764 57778888888888888888888888888775
Q ss_pred C
Q 011362 164 G 164 (487)
Q Consensus 164 ~ 164 (487)
+
T Consensus 483 ~ 483 (517)
T PRK10153 483 R 483 (517)
T ss_pred C
Confidence 3
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00011 Score=47.86 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=58.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCC
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-HTIVALNLFEEMANGN 88 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~ 88 (487)
++.+|..+...+...|++++|+..|++.++.. +.+...+..+..++...| ++++|++.+++..+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 56789999999999999999999999999986 557778999999999999 7999999999988743
|
... |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00056 Score=59.04 Aligned_cols=270 Identities=15% Similarity=0.121 Sum_probs=161.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDV----FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
.-+++.|+....+.+|+.+++.| ..|. .+|..|..+|.-.+++++|+++...=.......|. -.-...+...|.
T Consensus 25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd-klGEAKssgNLG 102 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD-KLGEAKSSGNLG 102 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc-hhcccccccccc
Confidence 45789999999999999999887 3343 35777888888899999998864321100000000 001123334455
Q ss_pred HHHHhcCChhHHHHHHHH----HHhCCCC-CCHhhHHHHHHHHHhcCC--------------------hhhHHHHHHHHH
Q 011362 107 DGLCKEGFVDKAKELLLQ----MKDKNIK-PNVVTYTSVIRGFCYAKD--------------------WNEAKRLFIEMM 161 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~----~~~~~~~-~~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~ 161 (487)
..+--.|.+++|+....+ ..+.|-+ .....+..+...|...|+ ++.|.+.|.+-.
T Consensus 103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL 182 (639)
T KOG1130|consen 103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENL 182 (639)
T ss_pred chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHH
Confidence 555556777776554332 2222211 123455567777765543 233444443322
Q ss_pred H----cCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHH----HHCCCC-CCHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 162 D----QGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLM----IQHGVR-PDAFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 162 ~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
+ .|-. .--..|..|...|.-.|+++.|+...+.- .+.|.. .....+..+..++.-.|+++.|.+.|+...
T Consensus 183 ~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl 262 (639)
T KOG1130|consen 183 ELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL 262 (639)
T ss_pred HHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence 1 1100 01124555666666778899888765432 223322 234567778888888999999999887753
Q ss_pred H----cCC-CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC-----CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 232 S----MGC-KHTVFSYSILINGYCKNKEIEGALSLYSEMLSK-----GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301 (487)
Q Consensus 232 ~----~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (487)
. .|- .....+...|.+.|.-..++++|+..+.+-+.- +..-....+..+..++...|..++|+.+.+..+
T Consensus 263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 2 221 223445667788888888899999887764431 122245677788889999999999988776554
Q ss_pred H
Q 011362 302 R 302 (487)
Q Consensus 302 ~ 302 (487)
+
T Consensus 343 ~ 343 (639)
T KOG1130|consen 343 R 343 (639)
T ss_pred H
Confidence 3
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00012 Score=46.96 Aligned_cols=59 Identities=19% Similarity=0.108 Sum_probs=46.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+...+.+.|++++|+..|+++++.. +-+...+..+..++...|++++|...|+.+.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4667788888888888888888875 4466778888888888888888888888887754
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0058 Score=49.82 Aligned_cols=62 Identities=15% Similarity=-0.009 Sum_probs=28.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEP--DVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
-..+..+...|++.+|+..|+.+....... -..+...++.++.+.|+++.|...++...+..
T Consensus 9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y 72 (203)
T PF13525_consen 9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY 72 (203)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 334444555555555555555555442111 12233444555555555555555555555443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.021 Score=49.47 Aligned_cols=285 Identities=11% Similarity=0.035 Sum_probs=155.1
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTLVN--GLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
-.|+-..|.++-.+..+. +..|...+..++. .-.-.|+++.|.+-|+.|.... .....-...|.-.-.+.
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-------EtRllGLRgLyleAqr~ 167 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-------ETRLLGLRGLYLEAQRL 167 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-------HHHHHhHHHHHHHHHhc
Confidence 456777777766665422 1334333333333 3345688888888888887632 11112233333344566
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCChhhH--HHHHHHH---HhCCChH
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG-VQPNVVTF--NVIMDEL---CKNGKMD 186 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~---~~~~~~~ 186 (487)
|+.+.|..+-+..-..- +.-...+...+...+..|+|+.|+++.+.-.... +.++..-- ..|+.+- .-..+..
T Consensus 168 GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~ 246 (531)
T COG3898 168 GAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPA 246 (531)
T ss_pred ccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChH
Confidence 77777777776665442 2234566677777778888888888877655432 23332211 1122111 1122445
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHH
Q 011362 187 EASRLLDLMIQHGVRPDAF-TYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEM 265 (487)
Q Consensus 187 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (487)
.|...-.+..+. .||.. .-..-..++.+.|+..++-.+++.+-+.. |.+..+.. ..+.+.|+ .+..-++..
T Consensus 247 ~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~l--Y~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 247 SARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIALL--YVRARSGD--TALDRLKRA 318 (531)
T ss_pred HHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHHH--HHHhcCCC--cHHHHHHHH
Confidence 555554444443 34422 22233466777888888888888777663 33333222 22334444 333333332
Q ss_pred HHC-CCc-cChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh-CCCHhHHHHHHHHHHHc
Q 011362 266 LSK-GIK-PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK-NGYIVEAVELFHTLRIL 338 (487)
Q Consensus 266 ~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~ 338 (487)
... ..+ .+..+...+..+....|++..|..--+.... ..|....|..+.+.-.. .|+-.++...+.+..+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 221 112 2445566667777777888777766666555 35666677666665443 48888888887777654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0019 Score=53.88 Aligned_cols=102 Identities=15% Similarity=0.058 Sum_probs=67.8
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc---CCHHHHHHHHHHHHhCCCCCCHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND---GQMDKARDLFLDMEENAVVPNVITF 417 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 417 (487)
|.|...|..|...|...|+++.|..-|....+.. ++|+..+..+..++..+ ....++..+|+++..... -|....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-ANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-ccHHHH
Confidence 5677777777777777777777777777776652 45566666666655432 235567777777776532 255566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 418 DMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
..|...+...|++.+|...|+.|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 666667777777777777777777654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0057 Score=49.89 Aligned_cols=177 Identities=13% Similarity=0.022 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCH-h
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIK-PNV-V 135 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~-~ 135 (487)
...+...+..+...|++.+|++.|+.+....+. .+........++.++.+.|+++.|...++.+.+.-.. |.. .
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~----s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~ 80 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN----SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADY 80 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT----STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhh
Confidence 344455666777889999999999988876532 1334566677888888889999999998888765211 111 1
Q ss_pred hHHHHHHHHHhc-----------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 011362 136 TYTSVIRGFCYA-----------KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDA 204 (487)
Q Consensus 136 ~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 204 (487)
++-.++.++... +...+|...|+.++. -|=.+.-..+|...+..+... -.
T Consensus 81 A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~---------------~yP~S~y~~~A~~~l~~l~~~----la 141 (203)
T PF13525_consen 81 ALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK---------------RYPNSEYAEEAKKRLAELRNR----LA 141 (203)
T ss_dssp HHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH---------------H-TTSTTHHHHHHHHHHHHHH----HH
T ss_pred HHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH---------------HCcCchHHHHHHHHHHHHHHH----HH
Confidence 222222222111 112344444444443 333333444444444433321 01
Q ss_pred HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC---HhhHHHHHHHHHccCCHhHH
Q 011362 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT---VFSYSILINGYCKNKEIEGA 258 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a 258 (487)
..-..+...|.+.|.+..|..-++.+.+.- |.+ ......++.+|.+.|..+.+
T Consensus 142 ~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 142 EHELYIARFYYKRGKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHH
Confidence 111224566777777777777777776651 222 23445667777777776644
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00027 Score=60.88 Aligned_cols=265 Identities=14% Similarity=0.068 Sum_probs=163.3
Q ss_pred CCccchHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHH--h--cCCC-CCHHHHHHHHHHHHcc
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD----AVTFTSLIKGLCAESRIMEAAALFTKLR--V--FGCE-PDVFTYTTLVNGLCRT 71 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~--~~~~-~~~~~~~~l~~~~~~~ 71 (487)
+|+....+.+|+.+++.|.. | +.+|..|..+|.-.+++++|+++...=+ . .|-+ -...+...|...+--.
T Consensus 30 ~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtlKv~ 108 (639)
T KOG1130|consen 30 MGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTLKVK 108 (639)
T ss_pred ccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchhhhh
Confidence 57888899999999999843 5 4456777888888999999988654311 1 1111 1222333455566667
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHHh----
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF--------------------VDKAKELLLQMKD---- 127 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~---- 127 (487)
|.+++|+-...+-.....+.|.-+ .....+..+..+|...|. ++.|.+.|.+=++
T Consensus 109 G~fdeA~~cc~rhLd~areLgDrv-~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~ 187 (639)
T KOG1130|consen 109 GAFDEALTCCFRHLDFARELGDRV-LESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEK 187 (639)
T ss_pred cccchHHHHHHHHhHHHHHHhHHH-hhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888766544332221111111 123455556666655442 3344444433211
Q ss_pred CCCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHH----cCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHH----
Q 011362 128 KNIK-PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD----QGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQ---- 197 (487)
Q Consensus 128 ~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---- 197 (487)
.|-. .--..|..|...|.-.|+++.|+...+.-.. .|-. .....+..+..++.-.|+++.|.+.|+....
T Consensus 188 lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAie 267 (639)
T KOG1130|consen 188 LGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIE 267 (639)
T ss_pred hhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHH
Confidence 1100 1223566777777788999999877654322 2221 1234567788899999999999998876543
Q ss_pred CCC-CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHH----cC-CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 198 HGV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMES----MG-CKHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 198 ~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
.|- .........|...|.-..++++|+.++.+-.. .+ ..-....+..|..+|...|..++|+.+....++
T Consensus 268 lg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 268 LGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred hcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 221 22345566788888888889999988765322 11 122346778899999999999999988776554
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.025 Score=48.99 Aligned_cols=283 Identities=14% Similarity=0.110 Sum_probs=176.4
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHH--HHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcCCCHh
Q 011362 146 YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD--ELCKNGKMDEASRLLDLMIQHGVRPDAF--TYNTLLDGFCLTGRVN 221 (487)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~ 221 (487)
-.|+-..|.++-.+..+. +..|......++. +-.-.|+++.|.+-|+.|... |... -...|.-..-+.|+.+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHH
Confidence 356777777766655432 2334444444444 334578899999999888763 2211 1222333334778888
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC-CccChh--hHHHHHHHH---HhcCCHHHHHH
Q 011362 222 HAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG-IKPDVV--IHNTLFVGL---FEIHQVERAFK 295 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~--~~~~l~~~~---~~~~~~~~a~~ 295 (487)
.|..+-+..-... +.-...+...+...|..|+|+.|+++++.-.... +.++.. .-..|+.+- .-..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 8888877776553 4456778888888999999999999988766532 223321 111222111 11234555665
Q ss_pred HHHHHHHcCCCCcHH-hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccC-C
Q 011362 296 LFDEMQRNGVAADTW-TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPC-G 373 (487)
Q Consensus 296 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~ 373 (487)
.-.+..+ ..||.. .-..-..++.+.|+..++-.+++.+-+. .|.+.++... .+.+.|+.. ..-+++... .
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY--~~ar~gdta--~dRlkRa~~L~ 322 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLY--VRARSGDTA--LDRLKRAKKLE 322 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHH--HHhcCCCcH--HHHHHHHHHHH
Confidence 5555554 345532 2334456788999999999999999876 4555554333 344566532 222222211 0
Q ss_pred CC-CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHHhc
Q 011362 374 VL-VPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRI-NEPSKVIELLHKMKEI 443 (487)
Q Consensus 374 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 443 (487)
.+ +.+..+...+..+-...|++..|..--+.... ..|....|..|.+.-... ||..++.+++-+.+..
T Consensus 323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 01 33566777788888899999998887777766 468888888888776544 9999999999998864
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.72 E-value=5.4e-05 Score=39.97 Aligned_cols=28 Identities=39% Similarity=0.789 Sum_probs=13.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
+|+.++.+|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0012 Score=46.00 Aligned_cols=73 Identities=12% Similarity=0.341 Sum_probs=38.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------ChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011362 389 LCNDGQMDKARDLFLDMEENAV-VPNVITFDMLIRGFIRIN--------EPSKVIELLHKMKEINVMPDASIVSIVVDLL 459 (487)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (487)
+...+++...-.+|+.+.+.|+ -|+..+|+.++.+..+.. +.-..+.+|+.|+..+++|+..+|..++..+
T Consensus 35 ~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~L 114 (120)
T PF08579_consen 35 CFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSL 114 (120)
T ss_pred HHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 3334555555555555555555 455555555555444321 1223455666666666666666666666555
Q ss_pred Hh
Q 011362 460 AK 461 (487)
Q Consensus 460 ~~ 461 (487)
.+
T Consensus 115 lk 116 (120)
T PF08579_consen 115 LK 116 (120)
T ss_pred HH
Confidence 43
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00026 Score=45.39 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=37.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+...+...|++++|+..|+.+.+.. |.+...+..+..++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3455666677777777777776665 456666666777777777777777777666554
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=7.1e-05 Score=39.48 Aligned_cols=31 Identities=23% Similarity=0.628 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 011362 415 ITFDMLIRGFIRINEPSKVIELLHKMKEINV 445 (487)
Q Consensus 415 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 445 (487)
.+|+.++++|.+.|++++|.+++++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998774
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.044 Score=48.57 Aligned_cols=434 Identities=12% Similarity=0.104 Sum_probs=235.0
Q ss_pred CccchHHHHHHHHHhCCCCCCHH------hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH--HHccCC
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAV------TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG--LCRTSH 73 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~ 73 (487)
|++.+|.++|-++.+.- ..++. .-+.++++|.. ++.+.....+..+.+. .| ...|..+..+ +-+.++
T Consensus 20 ~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~~k~ 94 (549)
T PF07079_consen 20 KKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYKQKE 94 (549)
T ss_pred hhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHHhhh
Confidence 67889999999988764 22322 23456666654 4555555555555544 23 2334444433 458899
Q ss_pred hHHHHHHHHHHHhCCCCCc-cccc-------cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCCHhhHHHHH
Q 011362 74 TIVALNLFEEMANGNGEFG-VVCE-------PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN----IKPNVVTYTSVI 141 (487)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~-~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 141 (487)
+.+|++.+......-.... .-.. ++...=+..+.++...|++.++..+++++...= ...+..+|+.++
T Consensus 95 ~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~v 174 (549)
T PF07079_consen 95 YRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAV 174 (549)
T ss_pred HHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHH
Confidence 9999999887766521000 0000 011122456778889999999999999887643 336888888755
Q ss_pred HHHHhc--------CCh-------hhHHHHHHHHHHc------CCCCChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHC
Q 011362 142 RGFCYA--------KDW-------NEAKRLFIEMMDQ------GVQPNVVTFNVIMDELCKNG--KMDEASRLLDLMIQH 198 (487)
Q Consensus 142 ~~~~~~--------~~~-------~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~ 198 (487)
-.+.+. ... +.+.-..+++... .+-|....+..++....-.. +..--.++++.-...
T Consensus 175 lmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~ 254 (549)
T PF07079_consen 175 LMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENF 254 (549)
T ss_pred HHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhh
Confidence 544332 111 2222222222211 12233333333333222111 111122222222223
Q ss_pred CCCCCHH-HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC----CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC
Q 011362 199 GVRPDAF-TYNTLLDGFCLTGRVNHAKELFVSMESMGCK----HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 273 (487)
Q Consensus 199 ~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 273 (487)
-+.|+.. +...+...+.. +.+++..+-+.+....+. .-..++..++....+.++...|.+.+.-+...+ |+
T Consensus 255 yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~ 330 (549)
T PF07079_consen 255 YVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PR 330 (549)
T ss_pred ccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--Cc
Confidence 3444432 23334444443 455555555544433211 123567788888889999999988888776643 22
Q ss_pred hhhHHH-------HHHHHH-hcC---CHHHHHHHHHHHHHcCCCCcH-HhHHHH---HHHHHhCCC-HhHHHHHHHHHHH
Q 011362 274 VVIHNT-------LFVGLF-EIH---QVERAFKLFDEMQRNGVAADT-WTYRTF---IDGLCKNGY-IVEAVELFHTLRI 337 (487)
Q Consensus 274 ~~~~~~-------l~~~~~-~~~---~~~~a~~~~~~~~~~~~~~~~-~~~~~l---~~~~~~~~~-~~~a~~~~~~~~~ 337 (487)
...-.. +-...+ .-. +...-+.+++.+...++ |. .....+ +.-+-+.|. -++|..+++.+..
T Consensus 331 ~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ 408 (549)
T PF07079_consen 331 ISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ 408 (549)
T ss_pred chhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 221111 111222 111 12233344455544432 22 222222 233445555 7889999998886
Q ss_pred cCCCCChHhHHHHHH----HHHh---cCCHHHHHHHHHhccCCCCCCc----HHHHHHHHHH--HHccCCHHHHHHHHHH
Q 011362 338 LKCEFDIRAYNSLID----GLCK---SGRLEIALELFRSLPCGVLVPN----VVTYSIMIGG--LCNDGQMDKARDLFLD 404 (487)
Q Consensus 338 ~~~~~~~~~~~~l~~----~~~~---~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~ 404 (487)
.. +-|...-|.+.. +|.+ ...+..-..+-.-+.+.|++|- ...-|.+..+ +..+|++.++.-.-..
T Consensus 409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W 487 (549)
T PF07079_consen 409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW 487 (549)
T ss_pred hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 54 445544444332 2222 1223344444444555666653 3445555554 4578999998877666
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 405 MEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSI 454 (487)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (487)
+.+ +.|++.+|..+.-+.....++++|..++..+ +|+..+++.
T Consensus 488 L~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds 530 (549)
T PF07079_consen 488 LTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS 530 (549)
T ss_pred HHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence 665 6799999999998889999999999998765 677777754
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0022 Score=54.10 Aligned_cols=99 Identities=14% Similarity=-0.001 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPD--VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
|........+.|++++|+..|+.+++..+... ..++..++.+|...|++++|...|+.+.+..+. .+.....+.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~----s~~~~dAl~ 221 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK----SPKAADAMF 221 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC----CcchhHHHH
Confidence 44333333556777777777777776631111 245666777777777777777777777765421 123345555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
.++.++...|+.+.|..+|+.+.+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5666666777777777777777664
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.02 Score=44.12 Aligned_cols=157 Identities=13% Similarity=0.139 Sum_probs=114.7
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG 143 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 143 (487)
+..+....=+++....-..+-.. ..|+...-..|..++.+.|+..+|...|++...--.--|......+.++
T Consensus 62 ~~~a~~q~ldP~R~~Rea~~~~~--------~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~A 133 (251)
T COG4700 62 LLMALQQKLDPERHLREATEELA--------IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQA 133 (251)
T ss_pred HHHHHHHhcChhHHHHHHHHHHh--------hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHH
Confidence 33344444455554444333333 3577888888999999999999999999998865455577788889999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH
Q 011362 144 FCYAKDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 222 (487)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (487)
....+++..|...++++.+.... .++.+...+.+.+...|.+.+|..-|+..... -|+..........+.+.|+.++
T Consensus 134 qfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~e 211 (251)
T COG4700 134 QFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLRE 211 (251)
T ss_pred HHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhH
Confidence 99999999999999999876421 13345567788999999999999999999886 4555554445666778887776
Q ss_pred HHHHHHHH
Q 011362 223 AKELFVSM 230 (487)
Q Consensus 223 a~~~~~~~ 230 (487)
+..-+..+
T Consensus 212 a~aq~~~v 219 (251)
T COG4700 212 ANAQYVAV 219 (251)
T ss_pred HHHHHHHH
Confidence 66544444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00041 Score=45.10 Aligned_cols=65 Identities=15% Similarity=0.065 Sum_probs=55.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhC
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG-FVDKAKELLLQMKDK 128 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 128 (487)
++.+|..+...+...|++++|+..|++..+.+ |.+...|..+..++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678888889999999999999999999876 667888999999999998 799999999887764
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.036 Score=51.35 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=23.9
Q ss_pred HHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 119 KELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
+.-+++++++|-.|+... +...++-.|.+.+|.++|.+
T Consensus 620 i~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 620 ISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred HHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 344566677776666543 44556667778888777764
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0068 Score=46.52 Aligned_cols=75 Identities=11% Similarity=0.226 Sum_probs=55.3
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCCHHHHHHH
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK-----EINVMPDASIVSIV 455 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 455 (487)
+...++..+...|++++|..+.+++.... +.+...|..++.+|...|+...|.+.|+++. +.|+.|++.+-...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~ 142 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALY 142 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHH
Confidence 44566777888999999999999998864 3377889999999999999999999999875 56999998876554
Q ss_pred H
Q 011362 456 V 456 (487)
Q Consensus 456 ~ 456 (487)
-
T Consensus 143 ~ 143 (146)
T PF03704_consen 143 R 143 (146)
T ss_dssp H
T ss_pred H
Confidence 3
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0036 Score=52.89 Aligned_cols=86 Identities=13% Similarity=0.037 Sum_probs=50.2
Q ss_pred HhcCCHHHHHHHHHhccCCCCCCc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcC
Q 011362 355 CKSGRLEIALELFRSLPCGVLVPN----VVTYSIMIGGLCNDGQMDKARDLFLDMEENAV--VPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 428 (487)
.+.|++++|...|+.+++. .|+ ...+..+..+|...|++++|...|+.+.+.-. +.....+..++.++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 4456666666666666654 222 23555666666677777777777777665311 112334444555566667
Q ss_pred ChhHHHHHHHHHHh
Q 011362 429 EPSKVIELLHKMKE 442 (487)
Q Consensus 429 ~~~~a~~~~~~~~~ 442 (487)
+.++|...|+++.+
T Consensus 232 ~~~~A~~~~~~vi~ 245 (263)
T PRK10803 232 DTAKAKAVYQQVIK 245 (263)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776665
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0021 Score=50.85 Aligned_cols=88 Identities=22% Similarity=0.256 Sum_probs=53.5
Q ss_pred CCChHhHHHHHHHHHh-----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc----------------CCHHHHH
Q 011362 341 EFDIRAYNSLIDGLCK-----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND----------------GQMDKAR 399 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g~~~~A~ 399 (487)
..+-.+|..+++.|.+ .|..+=....+..|.+.|+.-|..+|+.|+.++=+. .+-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4566777777777754 355666666677777777777777777777776431 1123355
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011362 400 DLFLDMEENAVVPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (487)
+++++|...|+-||..++..++..+.+.+
T Consensus 124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 55555555555555555555555554443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0027 Score=48.10 Aligned_cols=85 Identities=11% Similarity=-0.059 Sum_probs=73.8
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|..+|.-+.-.+ +.+...|..|..++...+++++|+..|......+ ..|+..+.....++...|+.+.|...
T Consensus 50 ~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 50 QGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 489999999999999887 4578888999999999999999999999987765 45666677788999999999999999
Q ss_pred HHHHHhC
Q 011362 81 FEEMANG 87 (487)
Q Consensus 81 ~~~~~~~ 87 (487)
|+.....
T Consensus 128 f~~a~~~ 134 (165)
T PRK15331 128 FELVNER 134 (165)
T ss_pred HHHHHhC
Confidence 9998874
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0039 Score=47.87 Aligned_cols=70 Identities=19% Similarity=0.263 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhh
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD-----QGVQPNVVT 171 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~ 171 (487)
....++..+...|+++.|..+.+.+.... |.+...|..++.++...|+...|.+.|+.+.. .|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 44445555555566666666665555543 34555566666666666666666655555432 255555444
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0065 Score=48.23 Aligned_cols=105 Identities=21% Similarity=0.280 Sum_probs=66.0
Q ss_pred ccchHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 011362 96 EPNTVTYTTIIDGLCK-----EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV 170 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 170 (487)
..+..+|..++..+.+ .|..+-....+..|.+.|+.-|..+|+.|+.++=+ |.+. |..
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n- 106 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN- 106 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-
Confidence 3566777777777764 46677777788888888888888888888887654 2221 110
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 171 TFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
.+..+..-| -.+-+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 107 ~fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 107 FFQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 011111111 12335567777777777777777777777777765554
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.085 Score=46.82 Aligned_cols=142 Identities=17% Similarity=0.232 Sum_probs=95.2
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcC-CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHH-HHHHHHH
Q 011362 312 YRTFIDGLCKNGYIVEAVELFHTLRILK-CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTY-SIMIGGL 389 (487)
Q Consensus 312 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~ 389 (487)
+...+....+..-.+.|..+|-++.+.+ ..+++.++++++..++ .|++..|..+|+.-... .||...| +-.+..+
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL 476 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence 3444555556667788888888888776 4567777888887665 57788888888765543 3444333 4455666
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011362 390 CNDGQMDKARDLFLDMEENAVVPN--VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLL 459 (487)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (487)
...++-..|..+|+..+.+ +..+ ...|..++.--..-|+...+..+-++|.+ ..|-..+.......+
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry 545 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRY 545 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHH
Confidence 7778888888888866543 2223 45778888777788888888888888876 346555555554444
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0018 Score=42.64 Aligned_cols=58 Identities=12% Similarity=-0.007 Sum_probs=46.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
...|.+.+++++|+++++++...+ +.+...+.....++...|++++|.+.|+.+.+..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 356788888888888888888875 5566777788888888888888888888888765
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.06 Score=44.07 Aligned_cols=129 Identities=11% Similarity=-0.024 Sum_probs=63.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHH-----HHH
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNS-----LID 352 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~~ 352 (487)
..++..+...+.+.-....+.++++...+.++.....+++.-.+.|+.+.|...|++..+..-..+....+. ...
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444455555555555555555554444555555555555566666666666665543322222222222 122
Q ss_pred HHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 353 GLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 353 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
.|.-++++..|...+.++.... +.++...|.-.-+..-.|+...|.+.++.|..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2333445555555555555432 23333344444444445555556555555555
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.014 Score=44.35 Aligned_cols=91 Identities=9% Similarity=-0.134 Sum_probs=56.5
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG 143 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 143 (487)
...-+...|++++|..+|+-+.--+ +.+..-|..|..++-..+++++|+..|......+. -|+..+.....+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d-------~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC 114 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYD-------FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHH
Confidence 3444456677777777777666554 45556666666666666777777777666544432 244445556666
Q ss_pred HHhcCChhhHHHHHHHHHH
Q 011362 144 FCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~ 162 (487)
+...|+.+.|...|...+.
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 6677777777777766665
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0028 Score=41.69 Aligned_cols=56 Identities=11% Similarity=0.052 Sum_probs=33.6
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 387 GGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
..|.+.+++++|.++++++...++. +...|.....++...|++++|.+.+++..+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3455666666666666666664322 4455555666666666666666666666653
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00066 Score=45.42 Aligned_cols=69 Identities=16% Similarity=0.125 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 59 FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
.+++.+...|...|++++|+..|++..+.....|...+....++..+..++...|++++|++.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 356677777778888888877777766432111111112356788888999999999999999887654
|
... |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.094 Score=48.74 Aligned_cols=251 Identities=14% Similarity=0.115 Sum_probs=125.2
Q ss_pred HHHHHHHHHhcCChhhHHHHH---------HHHHHcCCCCChhhHHHHHHHHHhCCCh--HHHHHHHHHHHHCCCCCCHH
Q 011362 137 YTSVIRGFCYAKDWNEAKRLF---------IEMMDQGVQPNVVTFNVIMDELCKNGKM--DEASRLLDLMIQHGVRPDAF 205 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~ 205 (487)
+..-+..|...|.+++|.++- +.+... ..+...++..-.+|.+..+. -+...-++++.+.|-.|+..
T Consensus 559 ~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i 636 (1081)
T KOG1538|consen 559 QSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL 636 (1081)
T ss_pred ccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH
Confidence 334445566777777766531 111111 11223344444566555443 33444456777777767754
Q ss_pred HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHH-----HHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHH
Q 011362 206 TYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYS-----ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTL 280 (487)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 280 (487)
. +...++-.|++.+|.++|.+--..+ .-...|+ .++.-+...|..++-..+.++-.+. .-+..--...
T Consensus 637 L---lA~~~Ay~gKF~EAAklFk~~G~en--RAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~W--Ar~~kePkaA 709 (1081)
T KOG1538|consen 637 L---LADVFAYQGKFHEAAKLFKRSGHEN--RALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADW--ARNIKEPKAA 709 (1081)
T ss_pred H---HHHHHHhhhhHHHHHHHHHHcCchh--hHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH--hhhcCCcHHH
Confidence 3 3455666777777777775431110 0011111 1223344444444433333322111 0011111233
Q ss_pred HHHHHhcCCHHHHHHHHHH------HHHcC---CCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHH
Q 011362 281 FVGLFEIHQVERAFKLFDE------MQRNG---VAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLI 351 (487)
Q Consensus 281 ~~~~~~~~~~~~a~~~~~~------~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 351 (487)
...+...|+.++|..+... +.+-+ ...+..+...+...+.+...+.-|-++|.++-.. ..++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHh
Confidence 4445566666666554311 11111 1223345555555566667777777777776432 2456
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCCCCcHHH-----------HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 352 DGLCKSGRLEIALELFRSLPCGVLVPNVVT-----------YSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 352 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
+.....+++++|..+-++..+. .|++.. |...-.+|.+.|+-.+|..+++++..
T Consensus 781 qlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 6677888888888888777653 344321 12223455666666666666666654
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.19 Score=46.49 Aligned_cols=187 Identities=13% Similarity=-0.008 Sum_probs=93.1
Q ss_pred HhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 011362 239 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDG 318 (487)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (487)
..+|...+..-...|+.+.+.-+++...-. ...=...|...+.-....|+.+-+..++....+-..+..+.+-..-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 345666666666777777777777766531 1112233444444444457777666666555443222222211111222
Q ss_pred HHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHH---HHHHhccCCCCCCcH--HHHHHHHH-HHHcc
Q 011362 319 LCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIAL---ELFRSLPCGVLVPNV--VTYSIMIG-GLCND 392 (487)
Q Consensus 319 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~---~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~ 392 (487)
.-..|++..|..+++.+...- +--...-..-+....+.|+.+.+. .++.........+.. ..+....+ .+.-.
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~ 454 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIR 454 (577)
T ss_pred HHhhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHh
Confidence 334567777777777776543 222222222333445566666666 444333322111111 11111111 12335
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011362 393 GQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 393 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (487)
++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 6777777777777765 3445566666666555443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.23 Score=47.15 Aligned_cols=343 Identities=13% Similarity=0.110 Sum_probs=163.6
Q ss_pred HHhcCCCCCHHHHHH-----HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh--hHHHHH
Q 011362 49 LRVFGCEPDVFTYTT-----LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV--DKAKEL 121 (487)
Q Consensus 49 ~~~~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a~~~ 121 (487)
+...|++.+..-|.. ++.-+...+.+..|+++-..+.... ..+...|.....-+.+..+. +.+.+.
T Consensus 423 ~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-------~~~~~Vl~~Wa~~kI~~~d~~d~~vld~ 495 (829)
T KOG2280|consen 423 DVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-------SQGDRVLLEWARRKIKQSDKMDEEVLDK 495 (829)
T ss_pred ccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-------ccccHHHHHHHHHHHhccCccchHHHHH
Confidence 445555555554433 4455566677777777766654322 11245566666655554321 222222
Q ss_pred H-HHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC----CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011362 122 L-LQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ----PNVVTFNVIMDELCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 122 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 196 (487)
+ +++... .. +...|..+.+.....|+++-|..+++.=...+.. .+..-+...+.-....|+.+-...++-.+.
T Consensus 496 I~~kls~~-~~-~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 496 IDEKLSAK-LT-PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHHhccc-CC-CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 2 222221 12 3345666666666777777777766542222111 112223444555566777777666666555
Q ss_pred HCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHH-HHHH----HCCCc
Q 011362 197 QHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLY-SEML----SKGIK 271 (487)
Q Consensus 197 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~----~~~~~ 271 (487)
.+- +...+...+ .+...|..+|.+..+.. +. ..+-..|....+...+-.+. +... ..+..
T Consensus 574 ~~~---~~s~l~~~l------~~~p~a~~lY~~~~r~~---~~---~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~ 638 (829)
T KOG2280|consen 574 NKL---NRSSLFMTL------RNQPLALSLYRQFMRHQ---DR---ATLYDFYNQDDNHQALASFHLQASYAAETIEGRI 638 (829)
T ss_pred HHH---HHHHHHHHH------HhchhhhHHHHHHHHhh---ch---hhhhhhhhcccchhhhhhhhhhhhhhhhhhcccc
Confidence 430 111111111 22344455555443321 00 11112222222222111111 1100 01111
Q ss_pred cChhhHHHHHHHHHhcCC----------HHHHHHHHHHHHH-cCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 011362 272 PDVVIHNTLFVGLFEIHQ----------VERAFKLFDEMQR-NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC 340 (487)
Q Consensus 272 ~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (487)
|+ .......+.+... ..+-+.+...+.. .+..-...+.+.-+.-+...|+..+|.++-.++.
T Consensus 639 ~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk---- 711 (829)
T KOG2280|consen 639 PA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK---- 711 (829)
T ss_pred hh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----
Confidence 22 1222222222221 1111122222221 1222233345555556667777777777776665
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDML 420 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 420 (487)
-||-..|..-+.+++..+++++-+++-+... ++.-|.-...+|.+.|+.++|.+++-+.... . -.
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l-----~----ek 776 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL-----Q----EK 776 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh-----H----HH
Confidence 4666777777777777777777666655444 1334556667777888888888777665432 1 34
Q ss_pred HHHHHhcCChhHHHHHH
Q 011362 421 IRGFIRINEPSKVIELL 437 (487)
Q Consensus 421 ~~~~~~~g~~~~a~~~~ 437 (487)
..+|.+.|++.+|.++-
T Consensus 777 v~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 777 VKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHHHHhccHHHHHHHH
Confidence 55667777777766544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.11 Score=42.66 Aligned_cols=140 Identities=15% Similarity=0.049 Sum_probs=80.8
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHH-----HH
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRT-----FI 316 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l~ 316 (487)
.+.++.++.-.+.+.-...++.++++...+.++.....+.+.-.+.|+.+.|...|+...+..-..+....+. ..
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 3455555566666666677777777665555666666666666677777777777776654432333322222 22
Q ss_pred HHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHH
Q 011362 317 DGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSI 384 (487)
Q Consensus 317 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (487)
..+.-.+++.+|...+.++...+ +.++...|.-.-+..-.|+...|.+.++.|.+. .|...+-++
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es 324 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES 324 (366)
T ss_pred hheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence 33445566666666666666554 444555554444445566777777777777664 344444333
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0017 Score=43.45 Aligned_cols=64 Identities=20% Similarity=0.188 Sum_probs=51.8
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC---CC-HHHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFG--CE---PD-VFTYTTLVNGLCRTSHTIVALNLFEEMAN 86 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~---~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 86 (487)
..+|+.+...|...|++++|+..|++..+.. .. |+ ..++..+..++...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4578999999999999999999999987541 11 22 44678899999999999999999998764
|
... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.06 Score=48.42 Aligned_cols=115 Identities=10% Similarity=-0.027 Sum_probs=69.8
Q ss_pred chHHHHHHHHH---hCCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC
Q 011362 5 SHGFVVLGRIL---KSCFTPDAVTFTSLIKGLCAE---------SRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS 72 (487)
Q Consensus 5 ~~A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 72 (487)
++|+.+|.+++ ..+ |.....|..+..++... .+..+|.++.++..+.+ +.|+.+...+..+..-.+
T Consensus 275 ~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHhhcccCC-cccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 45777777777 432 22255555554444322 23445666666666665 556666666666666666
Q ss_pred ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 73 HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+++.|..+|++....+ |....+|......+.-.|+.++|.+.+++..+.
T Consensus 353 ~~~~a~~~f~rA~~L~-------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 353 QAKVSHILFEQAKIHS-------TDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred chhhHHHHHHHHhhcC-------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 7777777777777655 444555555555555667777777777775554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.18 Score=44.70 Aligned_cols=102 Identities=13% Similarity=0.028 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh---cCChhHHHHHHHHHHhCCCCCCH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK---EGFVDKAKELLLQMKDKNIKPNV 134 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 134 (487)
..+...++-+|....+++..+++.+.+......- +..+...-...+-++.+ .|+.++|++++..+......+++
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~---~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~ 217 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD---VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDP 217 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc---hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCCh
Confidence 3445567778999999999999999998753100 12233444455666777 89999999999996666667889
Q ss_pred hhHHHHHHHHHhc---------CChhhHHHHHHHHHH
Q 011362 135 VTYTSVIRGFCYA---------KDWNEAKRLFIEMMD 162 (487)
Q Consensus 135 ~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~ 162 (487)
.+|..+.+.|-.. ...++|+..|.+.-+
T Consensus 218 d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe 254 (374)
T PF13281_consen 218 DTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFE 254 (374)
T ss_pred HHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHc
Confidence 9999988877421 235666666666544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.32 Score=46.27 Aligned_cols=341 Identities=12% Similarity=0.103 Sum_probs=198.8
Q ss_pred cccchHHHHH-----HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh--hhHHHHHHHHHHcCCCC
Q 011362 95 CEPNTVTYTT-----IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW--NEAKRLFIEMMDQGVQP 167 (487)
Q Consensus 95 ~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~ 167 (487)
+|.+..-|.. ++.-+...+.+..|+++-..+...-.. ...+|......+.+..+. +++.+.+++=..... .
T Consensus 428 IplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~-~ 505 (829)
T KOG2280|consen 428 IPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL-T 505 (829)
T ss_pred ccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-C
Confidence 5666666654 466677789999999998877544222 256777777777776432 233333333222212 3
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHH
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR----PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYS 243 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 243 (487)
....|..+.+.....|+.+-|..+++.=...+.. .+..-+...+.-+...|+.+-...++-.+... .+...+.
T Consensus 506 ~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~ 582 (829)
T KOG2280|consen 506 PGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLF 582 (829)
T ss_pred CceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHH
Confidence 4566888888888999999999888643322211 12233455567778889999888888777653 1222222
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHH-HHc-CCCCcHHhHHHHHHHHHh
Q 011362 244 ILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEM-QRN-GVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~ 321 (487)
.. ..+...|..+|.+..+.. +.. .+-..|....+...+-.+.-+- ... .+.+-..........+.+
T Consensus 583 ~~------l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~ 650 (829)
T KOG2280|consen 583 MT------LRNQPLALSLYRQFMRHQ---DRA---TLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAK 650 (829)
T ss_pred HH------HHhchhhhHHHHHHHHhh---chh---hhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhh
Confidence 22 345567778888776641 111 1122222222222222211111 000 011112223333444443
Q ss_pred CCCH---hH-------HHHHHHHHH-HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 322 NGYI---VE-------AVELFHTLR-ILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 322 ~~~~---~~-------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
.... .+ -+.+.+.+. +.+.....-+.+--+.-+...|+..+|.++-.++. -|+...|-.-+.+++
T Consensus 651 sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa 726 (829)
T KOG2280|consen 651 SKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALA 726 (829)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHH
Confidence 3321 11 122222222 12223333445566667788999999999998887 678888888899999
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccccccccc
Q 011362 391 NDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLP 470 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~ 470 (487)
..+++++-+++-+... .+.-|.-.+.+|.+.|+.++|.+.+-+.-.. + -...+|.+.|++.+|++
T Consensus 727 ~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~l---~------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 727 DIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGGL---Q------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred hhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCCh---H------HHHHHHHHhccHHHHHH
Confidence 9999988777655443 3556777889999999999999999877431 1 33455666666655444
Q ss_pred c
Q 011362 471 S 471 (487)
Q Consensus 471 ~ 471 (487)
.
T Consensus 792 ~ 792 (829)
T KOG2280|consen 792 L 792 (829)
T ss_pred H
Confidence 3
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.22 Score=44.31 Aligned_cols=144 Identities=19% Similarity=0.166 Sum_probs=105.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 011362 276 IHNTLFVGLFEIHQVERAFKLFDEMQRNG-VAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGL 354 (487)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (487)
+|...+....+....+.|..+|-++.+.+ ..++...+++++..++ .|+..-|..+|+.-...- +.++.-.+-.+..+
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f-~d~~~y~~kyl~fL 476 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF-PDSTLYKEKYLLFL 476 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 45556666677888999999999999988 5677788888888665 588889999998766542 33444445667778
Q ss_pred HhcCCHHHHHHHHHhccCCCCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 011362 355 CKSGRLEIALELFRSLPCGVLVPN--VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGF 424 (487)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (487)
...++-+.|..+|+..+.. +..+ ...|..++.--..-|+...+..+=++|... -|...+.....+-|
T Consensus 477 i~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry 545 (660)
T COG5107 477 IRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRY 545 (660)
T ss_pred HHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHH
Confidence 8899999999999966543 2223 467889998888999999999888888773 44444444343334
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.22 Score=44.16 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 416 TFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
.+..++.++.-.|++++|.+.+++|....
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 34567778888899999999999988753
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.17 Score=41.06 Aligned_cols=87 Identities=14% Similarity=0.008 Sum_probs=45.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...|..-..+|....++++|...+.+..+.. ..+...|. ....++.|.-+.+++.+. +.-...|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-------AAKayEqaamLake~~kl--------sEvvdl~ 94 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-------AAKAYEQAAMLAKELSKL--------SEVVDLY 94 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-------HHHHHHHHHHHHHHHHHh--------HHHHHHH
Confidence 4445555666666667777766666655321 12221111 122345555555555542 2334555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQM 125 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~ 125 (487)
+.....|..+|.++.|-..+++.
T Consensus 95 eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 95 EKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHhCCcchHHHHHHHH
Confidence 56666666666666666665554
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.065 Score=49.99 Aligned_cols=133 Identities=14% Similarity=0.100 Sum_probs=65.2
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHH-
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIKPNVVTYT- 138 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~- 138 (487)
++....-.|+-+.+++.+....+.++-.+.......-.|+..+..++. ....+.|.++++.+.+. -|+...|.
T Consensus 194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~ 271 (468)
T PF10300_consen 194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF 271 (468)
T ss_pred HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence 334444568888888888776664421100000011223333333332 23456667777766664 23433333
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC---CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQG---VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH 198 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 198 (487)
.-.+.+...|+.++|++.|++..... .+.....+-.++-.+....++++|...|..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 23455566677777777777554211 0111122233344455556666666666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.029 Score=46.47 Aligned_cols=99 Identities=15% Similarity=0.057 Sum_probs=64.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCE--PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
.|+.- -.+.+.|++..|...|...++.... -....+.-|+.++...|+++.|...|..+.+..+. .+.-++.+
T Consensus 144 ~Y~~A-~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~----s~KApdal 218 (262)
T COG1729 144 LYNAA-LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK----SPKAPDAL 218 (262)
T ss_pred HHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC----CCCChHHH
Confidence 35543 3345667777777777777766321 12234556777777777777777777777776543 23445667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..|..+..+.|+.++|...|+++.+.
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 77777777777777777777777665
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.13 Score=43.20 Aligned_cols=150 Identities=11% Similarity=0.085 Sum_probs=105.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
-.......|++.+|...|....... +-+......++.+|...|+.+.|..++..+..... .........-+..
T Consensus 140 ~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~------~~~~~~l~a~i~l 212 (304)
T COG3118 140 EAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ------DKAAHGLQAQIEL 212 (304)
T ss_pred HhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch------hhHHHHHHHHHHH
Confidence 3456678999999999999988875 44456777888999999999999999998876541 1111222234556
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc--CCCCChhhHHHHHHHHHhCCChH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ--GVQPNVVTFNVIMDELCKNGKMD 186 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~ 186 (487)
+.+.....+...+-..+-.. +-|...-..+...+...|+.+.|.+.+-.+++. |.. |...-..++..+...|.-+
T Consensus 213 l~qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 66666666666666555543 337777778888999999999999888777654 333 5566677777777777443
Q ss_pred HH
Q 011362 187 EA 188 (487)
Q Consensus 187 ~a 188 (487)
.+
T Consensus 290 p~ 291 (304)
T COG3118 290 PL 291 (304)
T ss_pred HH
Confidence 33
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.034 Score=49.83 Aligned_cols=65 Identities=15% Similarity=0.101 Sum_probs=47.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV----FTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
.+...++.+..+|...|++++|+..|++.++.. |+. .+|..+..+|...|+.++|+..+++..+.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356677777888888888888888888877763 332 24777777888888888888888877763
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.24 Score=40.25 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC 215 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (487)
.|.....+|...+++++|...+.+..+. ..-+...|. . ...++.|..+++++.+. .--+..++.....|.
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-A------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~ 102 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-A------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYV 102 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-H------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 4555556677777888888777766532 111222222 1 22345555555555443 112234555556677
Q ss_pred cCCCHhHHHHHHHHH
Q 011362 216 LTGRVNHAKELFVSM 230 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~ 230 (487)
..|.++.|-..+++.
T Consensus 103 E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 103 ECGSPDTAAMALEKA 117 (308)
T ss_pred HhCCcchHHHHHHHH
Confidence 777777666665554
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.3 Score=41.12 Aligned_cols=144 Identities=17% Similarity=0.115 Sum_probs=82.4
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011362 66 NGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145 (487)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (487)
......|++.+|..+|....... +.+...-..++.+|...|+.+.|..++..+...--.........-+..+.
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~-------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAA-------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhC-------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34567778888888888777765 55567777778888888888888888877654421111111112233444
Q ss_pred hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCC
Q 011362 146 YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHG-VRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 146 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 218 (487)
+.....+...+-.+.-.. +-|...-..+...+...|+.+.|++.+-.+.+.+ -.-|...-..++..+...|
T Consensus 215 qaa~~~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 215 QAAATPEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhcCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444444333331 1145555566667777777777776665555432 1224455555555555555
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.03 Score=48.99 Aligned_cols=117 Identities=14% Similarity=0.003 Sum_probs=65.4
Q ss_pred CccchHHHHHHHHHhCCC-----C---------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCF-----T---------PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG 67 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~-----~---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 67 (487)
|++..|...|++++..-. + .-..++..|.-+|.+.+++..|++.-++.+..+ ++|+..+..-..+
T Consensus 222 gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A 300 (397)
T KOG0543|consen 222 GKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQA 300 (397)
T ss_pred chHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHH
Confidence 566777777776543310 0 112345555666666677777777666666665 5566666666666
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh-hHHHHHHHHHH
Q 011362 68 LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV-DKAKELLLQMK 126 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~ 126 (487)
+...|+++.|+..|+++.+.. |.|..+-..++.+-.+.... ++..++|..|.
T Consensus 301 ~l~~~e~~~A~~df~ka~k~~-------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 301 LLALGEYDLARDDFQKALKLE-------PSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred HHhhccHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 666777777777777766654 34444444444443333322 23345555554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.093 Score=47.17 Aligned_cols=65 Identities=17% Similarity=-0.014 Sum_probs=41.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch---HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT---VTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+...++.+..+|...|++++|+..|++..+.+ |.+. .+|..+..+|...|+.++|++.+++..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-------Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN-------PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34556666777777777777777777766654 2222 24666777777777777777777766654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.072 Score=39.15 Aligned_cols=53 Identities=13% Similarity=0.051 Sum_probs=39.9
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhc
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-NIKPNVVTYTSVIRGFCYA 147 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 147 (487)
..|+..+..+++.+|+..|++..|.++.+.+.+. +++.+..+|..|+.-+...
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 5678888888888888888888888888877553 5666777888877755433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.057 Score=47.31 Aligned_cols=93 Identities=12% Similarity=0.019 Sum_probs=52.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhc-----CCCC---------CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccc
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVF-----GCEP---------DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVV 94 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~---------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 94 (487)
-...|.+.|++..|...|+++... +.++ -..++..+..++.+.+++..|++..++.+..+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~------ 287 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD------ 287 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC------
Confidence 356788999999999999987653 1111 01123344444555555555555555555544
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
++|......-..++...|+++.|+..|+++++.
T Consensus 288 -~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 288 -PNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred -CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 445555555555555555555555555555543
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.69 Score=43.05 Aligned_cols=413 Identities=11% Similarity=0.070 Sum_probs=213.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
...|..++.--....+.+.+..++..++.. -|-.. -|......=.+.|..+.+.++|++.... +|.+...
T Consensus 45 f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-------ip~Svdl 115 (577)
T KOG1258|consen 45 FDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-------IPLSVDL 115 (577)
T ss_pred ccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-------hhhHHHH
Confidence 334555554433444445566666666643 23332 3445555555677777888888877765 3566666
Q ss_pred HHHHHHHHHh-cCChhHHHHHHHHHHhC-CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011362 102 YTTIIDGLCK-EGFVDKAKELLLQMKDK-NIK-PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 178 (487)
Q Consensus 102 ~~~l~~~~~~-~g~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (487)
|...+..+.. .|+.+.....|+..... |.. .+...|...+..-..++++.....++++.++. ....++.....
T Consensus 116 W~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~ 191 (577)
T KOG1258|consen 116 WLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDR 191 (577)
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHH
Confidence 6665554443 46666777777766553 211 24456677777667777777888888777764 12223322222
Q ss_pred HH---hCC------ChHHHHHHHHHHHHC---C-CCCCHHHHHHHHHHH-HcCCCHhHHHHHHHHHHHcCCCCCHhhHHH
Q 011362 179 LC---KNG------KMDEASRLLDLMIQH---G-VRPDAFTYNTLLDGF-CLTGRVNHAKELFVSMESMGCKHTVFSYSI 244 (487)
Q Consensus 179 ~~---~~~------~~~~a~~~~~~~~~~---~-~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 244 (487)
|. ... ..+++.++-...... + ..+.......-+.-- ...+..+++...+.+.. ..
T Consensus 192 f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~ 260 (577)
T KOG1258|consen 192 FKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SI 260 (577)
T ss_pred HHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HH
Confidence 21 111 112222221111110 0 000000000000000 00011111111111110 11
Q ss_pred HHHHHHccCCHhHHHHHHHHHHHCC---C----ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 011362 245 LINGYCKNKEIEGALSLYSEMLSKG---I----KPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (487)
.-.++............++..+... + .++..+|...+..-...|+.+.+.-.+++..-.... =...|-..+.
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~-Y~efWiky~~ 339 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL-YDEFWIKYAR 339 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh-hHHHHHHHHH
Confidence 1112222333333334444433321 1 224557788888888999999999999888643111 1234555555
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHH-HHHHHHHHHHccCCHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVV-TYSIMIGGLCNDGQMD 396 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 396 (487)
.....|+.+-|..++....+...+..+.+.-.-....-..|++..|..+++.+.+.- |+.. .-..-+....+.|..+
T Consensus 340 ~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~ 417 (577)
T KOG1258|consen 340 WMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLE 417 (577)
T ss_pred HHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchh
Confidence 556669988888888777655444333333222333456789999999999998762 5543 2223344456678877
Q ss_pred HHHH---HHHHHHhCCCCCC--HHHHHHHHH-HHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 397 KARD---LFLDMEENAVVPN--VITFDMLIR-GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 397 ~A~~---~~~~~~~~~~~~~--~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
.+.. ++.........+. ...+....+ .+.-.++.+.|..++.++.+.. +++...|..++....-.+
T Consensus 418 ~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 418 DANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP 489 (577)
T ss_pred hhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence 7773 3333222111111 112222222 2345678899999999998863 666777777776655444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.88 Score=44.15 Aligned_cols=148 Identities=14% Similarity=0.119 Sum_probs=98.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
.+.......+.+.|++++|...|-+.+.. +.|. .++.-|....+..+-..+++.+.+.+ -.+...-.
T Consensus 369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~g-------la~~dhtt 435 (933)
T KOG2114|consen 369 EIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKG-------LANSDHTT 435 (933)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcc-------cccchhHH
Confidence 34455566677899999999988776543 1222 25566667777778888888888887 45677778
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCC
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 183 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (487)
.|+.+|.+.++.++-.+..+... .|.- ..-....+..+.+.+-.++|.-+-.+... ....... .+-..+
T Consensus 436 lLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ 504 (933)
T KOG2114|consen 436 LLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDI---LLEDLH 504 (933)
T ss_pred HHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHH---HHHHhc
Confidence 89999999999988877776554 2211 11244566777777777777766555432 2222222 334567
Q ss_pred ChHHHHHHHHHH
Q 011362 184 KMDEASRLLDLM 195 (487)
Q Consensus 184 ~~~~a~~~~~~~ 195 (487)
++++|++++..+
T Consensus 505 ny~eAl~yi~sl 516 (933)
T KOG2114|consen 505 NYEEALRYISSL 516 (933)
T ss_pred CHHHHHHHHhcC
Confidence 777777776544
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.065 Score=44.44 Aligned_cols=88 Identities=15% Similarity=0.050 Sum_probs=73.4
Q ss_pred CCccchHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTP--DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGC--EPDVFTYTTLVNGLCRTSHTIV 76 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 76 (487)
.|+|..|.+.|...++..+.- ...++..|..++...|++++|..+|..+.+... +--+..+..|..+..+.|+.++
T Consensus 154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~ 233 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE 233 (262)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence 488999999999999986331 145667799999999999999999999987632 1234678888999999999999
Q ss_pred HHHHHHHHHhCC
Q 011362 77 ALNLFEEMANGN 88 (487)
Q Consensus 77 a~~~~~~~~~~~ 88 (487)
|...|+++.+..
T Consensus 234 A~atl~qv~k~Y 245 (262)
T COG1729 234 ACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHC
Confidence 999999999986
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.53 Score=41.30 Aligned_cols=104 Identities=19% Similarity=0.174 Sum_probs=55.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS 357 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (487)
+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++-..+... ..++..|..++.+|.+.
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKY 250 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHC
Confidence 333444455555555555433331 35555666666666666666655544321 22345566666666666
Q ss_pred CCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHH
Q 011362 358 GRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDL 401 (487)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 401 (487)
|+..+|..+..++. +..-+..|.++|++.+|.+.
T Consensus 251 ~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 251 GNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred CCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHH
Confidence 66666666655522 12334455666666666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.08 Score=38.92 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=37.8
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHH
Q 011362 374 VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN-AVVPNVITFDMLIRGF 424 (487)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~ 424 (487)
...|+..+..+++.+|+..|++..|.++.+...+. +++.+..+|..|+.=.
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35678888888888888888888888888877543 6666677777776543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.13 Score=43.81 Aligned_cols=157 Identities=14% Similarity=0.036 Sum_probs=107.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCccccccchHHHHHHHHHHHh
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG-NGEFGVVCEPNTVTYTTIIDGLCK 111 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 111 (487)
+.-+|++.+|-..++++++.. |.|.-++...=.+|...|+.+.-...++++... +.+ .|-.......+.-++..
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~d----lp~~sYv~GmyaFgL~E 187 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNAD----LPCYSYVHGMYAFGLEE 187 (491)
T ss_pred hhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCC----CcHHHHHHHHHHhhHHH
Confidence 456788888888888888763 666667777777888888888888888888765 211 22223334445556677
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc---CCCCChhhHHHHHHHHHhCCChHHH
Q 011362 112 EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ---GVQPNVVTFNVIMDELCKNGKMDEA 188 (487)
Q Consensus 112 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 188 (487)
.|-+++|++.-++..+.+ +.|....+.+...+-..+++.++.+...+-... +--.-...|-...-.+...+.++.|
T Consensus 188 ~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~a 266 (491)
T KOG2610|consen 188 CGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKA 266 (491)
T ss_pred hccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHH
Confidence 888999999888888775 346667777788888888888888876654322 1111122333445566677889999
Q ss_pred HHHHHHH
Q 011362 189 SRLLDLM 195 (487)
Q Consensus 189 ~~~~~~~ 195 (487)
+.+|+.=
T Consensus 267 leIyD~e 273 (491)
T KOG2610|consen 267 LEIYDRE 273 (491)
T ss_pred HHHHHHH
Confidence 9988653
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.57 Score=41.13 Aligned_cols=109 Identities=13% Similarity=0.147 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
+.+..+.-+...|+...|.++-.++. -|+...|..-+.+++..++|++-..+... . -++.-|...+.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k-----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K-----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C-----CCCCChHHHHHHHH
Confidence 45555666777888888888876664 57888888889999999999887776543 1 23466788888888
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 391 NDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
+.|+..+|..+..++ + + ..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence 999998888887762 2 1 3445567788888777665433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.011 Score=33.96 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=32.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLV 65 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 65 (487)
.++..+...|...|++++|+++|+++++.. +.|...+..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHhh
Confidence 457788999999999999999999999875 55666665554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.43 Score=39.43 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=28.7
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 175 IMDELCKNGKMDEASRLLDLMIQHGVRPDA---FTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
+.+.|.+.|.+..|..-++.|++. .+-+. ..+-.+..+|...|-.++|.+.-+-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 344556666666666666666654 22122 23334445566666666555544333
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.26 Score=36.71 Aligned_cols=67 Identities=9% Similarity=-0.039 Sum_probs=53.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC--EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
...+..-.....+.|++++|++.|+.+..+-. +-...+...++.+|.+.+++++|...+++..+.++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP 78 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHP 78 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 33444456777899999999999999988732 22345677889999999999999999999999874
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.057 Score=38.89 Aligned_cols=88 Identities=14% Similarity=0.045 Sum_probs=68.9
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHccCChHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF---TYTTLVNGLCRTSHTIVA 77 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a 77 (487)
.|+++.|++.|.+.+... |...++||.-.+++.-+|+.++|+.=+++.++........ .|..-...|...|+.+.|
T Consensus 56 ~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~A 134 (175)
T KOG4555|consen 56 AGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAA 134 (175)
T ss_pred ccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHH
Confidence 478899999999998885 4578889999999999999999999999888764233322 344455667788999999
Q ss_pred HHHHHHHHhCCC
Q 011362 78 LNLFEEMANGNG 89 (487)
Q Consensus 78 ~~~~~~~~~~~~ 89 (487)
..=|+...+.++
T Consensus 135 R~DFe~AA~LGS 146 (175)
T KOG4555|consen 135 RADFEAAAQLGS 146 (175)
T ss_pred HHhHHHHHHhCC
Confidence 998988887763
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.11 Score=47.75 Aligned_cols=161 Identities=13% Similarity=0.131 Sum_probs=97.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
.+...-+|+++++.++.+.-.-.. ..+......++.-+.+.|..+.|+++-.. +.+ -....
T Consensus 268 fk~av~~~d~~~v~~~i~~~~ll~-~i~~~~~~~i~~fL~~~G~~e~AL~~~~D---------------~~~---rFeLA 328 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAASNLLP-NIPKDQGQSIARFLEKKGYPELALQFVTD---------------PDH---RFELA 328 (443)
T ss_dssp HHHHHHTT-HHH-----HHHHTGG-G--HHHHHHHHHHHHHTT-HHHHHHHSS----------------HHH---HHHHH
T ss_pred HHHHHHcCChhhhhhhhhhhhhcc-cCChhHHHHHHHHHHHCCCHHHHHhhcCC---------------hHH---HhHHH
Confidence 344566788888877775211110 12244567778888888888888876543 111 12334
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 189 (487)
.+.|+++.|.++.++. .+...|..|.....+.|+++-|++.|.+... +..|+-.|...|+.+...
T Consensus 329 l~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 5678888888774322 3677888899988899999999888887542 667777788888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
++.+.....|. ++....++.-.|+.++..+++.+.
T Consensus 394 kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 394 KLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88877777653 233344455567777777766543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.37 Score=45.08 Aligned_cols=162 Identities=14% Similarity=0.097 Sum_probs=105.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCccccc
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF------TYTTLVNGLCR----TSHTIVALNLFEEMANGNGEFGVVCE 96 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 96 (487)
..++....-.||-+.+++.+.+..+.+.-..+. .|...+..++. ....+.|.++++.+.+.. |
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y-------P 264 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY-------P 264 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC-------C
Confidence 445666677899999999999877643111111 23333333333 456788999999999875 3
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--C-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN--I-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFN 173 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 173 (487)
......-.-.+.+...|++++|++.|+...... . +.....+--+...+...++|++|...|..+.+.+-. +...|.
T Consensus 265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~ 343 (468)
T PF10300_consen 265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYA 343 (468)
T ss_pred CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHH
Confidence 333444445677788999999999999765421 1 112233445677788899999999999999886432 344444
Q ss_pred HHHH-HHHhCCCh-------HHHHHHHHHHH
Q 011362 174 VIMD-ELCKNGKM-------DEASRLLDLMI 196 (487)
Q Consensus 174 ~l~~-~~~~~~~~-------~~a~~~~~~~~ 196 (487)
-+.. ++...++. ++|..+|.+..
T Consensus 344 Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 344 YLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3333 45566766 66666666543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.6 Score=40.36 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=64.1
Q ss_pred CccchHHHHHHHHHhCCC--CCCH-----HhHHHHHHHHHhcC-CHHHHHHHHHHHHhc----C----CCCCH-----HH
Q 011362 2 GRVSHGFVVLGRILKSCF--TPDA-----VTFTSLIKGLCAES-RIMEAAALFTKLRVF----G----CEPDV-----FT 60 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~--~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~----~~~~~-----~~ 60 (487)
|+++.|..++.++..... .|+. ..+..++......+ +++.|..++++..+. + ..++. .+
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~i 86 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSI 86 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHH
Confidence 778888888888766431 2221 12222334444556 888888877776543 1 12222 23
Q ss_pred HHHHHHHHHccCChH---HHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 61 YTTLVNGLCRTSHTI---VALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+..++.+|...+..+ +|.++++.+.+.. +..+..+..-+.++.+.++.+.+.+++.+|...
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-------~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY-------GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-------CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 445555555555443 3444444443332 333455555555555566666666666666654
|
It is also involved in sporulation []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.62 Score=40.29 Aligned_cols=168 Identities=11% Similarity=0.103 Sum_probs=96.1
Q ss_pred HHhcCCHHHHHHHHHHHHhcCC--CCCHH-----HHHHHHHHHHccC-ChHHHHHHHHHHHhC----CCCCcccccc---
Q 011362 33 LCAESRIMEAAALFTKLRVFGC--EPDVF-----TYTTLVNGLCRTS-HTIVALNLFEEMANG----NGEFGVVCEP--- 97 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~--~~~~~-----~~~~l~~~~~~~g-~~~~a~~~~~~~~~~----~~~~~~~~~~--- 97 (487)
..+.|+++.|..++.++..... .|+.. .+..++......+ +++.|..++++..+. +... . ..+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~-~-~~~~~~ 80 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMD-K-LSPDGS 80 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcc-c-cCCcHH
Confidence 3578999999999999876431 23221 2233344445666 999888888776543 1100 0 112
Q ss_pred --chHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH
Q 011362 98 --NTVTYTTIIDGLCKEGFVD---KAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTF 172 (487)
Q Consensus 98 --~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 172 (487)
...+...++.+|...+..+ +|..+++.+... .+-.+.++..-+..+.+.++.+.+.+.+.+|+..- ......+
T Consensus 81 elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~ 158 (278)
T PF08631_consen 81 ELRLSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNF 158 (278)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchH
Confidence 2345667777777776644 455566666443 22235556566677777888888888888888752 2123344
Q ss_pred HHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCH
Q 011362 173 NVIMDELC--KNGKMDEASRLLDLMIQHGVRPDA 204 (487)
Q Consensus 173 ~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~ 204 (487)
...+..+. .......+...+..+....+.|..
T Consensus 159 ~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 159 DSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 44444431 122334555666555544444443
|
It is also involved in sporulation []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.54 Score=39.45 Aligned_cols=225 Identities=16% Similarity=0.047 Sum_probs=152.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhC-CCCCccccccchHHHHHHHHHHHhcC
Q 011362 36 ESRIMEAAALFTKLRVFGCEP-DVFTYTTLVNGLCRTSHTIVALNLFEEMANG-NGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
.+....+...+.......... ...........+...+.+..+...+...... . .+.....+......+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELEL------LPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhh------ccchHHHHHHHHHHHHHHh
Confidence 467777777777776653221 2456667777788888888888888877652 1 2456677777777788888
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHH-HHHhcCChhhHHHHHHHHHHcCC--CCChhhHHHHHHHHHhCCChHHHHH
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIR-GFCYAKDWNEAKRLFIEMMDQGV--QPNVVTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 190 (487)
++..+.+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 188 (291)
T COG0457 110 KYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALE 188 (291)
T ss_pred hHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHH
Confidence 8888888888887754332 222233333 67788899999998888855321 1223334444445677888899999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 191 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.+..............+..+...+...++++.+...+....... +.....+..+...+...+..+.+...+......
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 189 LLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 88888776322135667777888888888899998888887763 222344455555555677788998888888775
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.11 Score=46.70 Aligned_cols=115 Identities=9% Similarity=-0.015 Sum_probs=86.8
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFE 82 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 82 (487)
...+|+..-+++++.+ +.|+.+...+..++...++++.|..+|++....+ +....+|......+.-.|+.++|.+.++
T Consensus 319 ~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 319 AAQKALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred HHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3467889999999998 5689988889998888999999999999999875 4445677777777788999999999999
Q ss_pred HHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHH
Q 011362 83 EMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQM 125 (487)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 125 (487)
+..+..| ...........+..|+..+ ++.|+.+|-+-
T Consensus 397 ~alrLsP-----~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 433 (458)
T PRK11906 397 KSLQLEP-----RRRKAVVIKECVDMYVPNP-LKNNIKLYYKE 433 (458)
T ss_pred HHhccCc-----hhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence 9887652 1222333444455666554 67777776543
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.59 Score=38.67 Aligned_cols=72 Identities=6% Similarity=0.045 Sum_probs=43.5
Q ss_pred HHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKN--IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (487)
-.+.|++++|.+.|+.+.... -+....+...++.++.+.++++.|+..+++.....+......|...+.+++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 346777788888777776541 122344555666677777777777777777766543333333444444443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.16 Score=46.78 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=89.3
Q ss_pred HHHHccCChHHHHHHHH--HHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011362 66 NGLCRTSHTIVALNLFE--EMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG 143 (487)
Q Consensus 66 ~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 143 (487)
....-.++++++.++.+ ++.. .......+.++..+.+.|..+.|+++.. |+. .-...
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---------~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeL 327 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---------NIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFEL 327 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---------G--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHH
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---------cCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHH
Confidence 34445677777666664 2221 1124556777777777888887777642 221 22334
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHH
Q 011362 144 FCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 223 (487)
..+.|+++.|.++.++. .+...|..|.......|+++-|.+.|.+.. -+..|+-.|...|+.+.-
T Consensus 328 Al~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L 392 (443)
T PF04053_consen 328 ALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKL 392 (443)
T ss_dssp HHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHH
T ss_pred HHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHH
Confidence 45678888777765432 256678888888888888888888877642 244556667777777777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEM 265 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 265 (487)
.++.+.....|- ++....++...|+.++..+++.+.
T Consensus 393 ~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 393 SKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 777766666542 334444455567777777666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.021 Score=32.89 Aligned_cols=42 Identities=10% Similarity=0.108 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 59 FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 59 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
.++..+...|...|++++|+++|+++.+.. |.+...+..+..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~-------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD-------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCCHHHHHHhhh
Confidence 457788999999999999999999999986 667777766653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.43 Score=36.58 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=51.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH-HHH--HHHHHH
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV-TYT--TIIDGL 109 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~--~l~~~~ 109 (487)
.+.+..++|+.-|..+.+.|...-+. ............|+...|...|.++....+ .|... -.. .-...+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~------~P~~~rd~ARlraa~lL 142 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS------IPQIGRDLARLRAAYLL 142 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC------CcchhhHHHHHHHHHHH
Confidence 34455555555555555544322111 122223334455555555555555554331 11110 011 111123
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...|.++......+-+-..+-+.....-..|..+-.+.|++.+|.++|..+..
T Consensus 143 vD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 143 VDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 34455555554444443333222333333444444455555555555555443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.15 Score=36.83 Aligned_cols=91 Identities=14% Similarity=0.059 Sum_probs=44.2
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh---hHHHHHHH
Q 011362 67 GLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV---TYTSVIRG 143 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~ 143 (487)
+++..|+.+.|++.|.+....- |.+...||.-..++--.|+.++|++-+++..+..-..+.. .|..-...
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-------PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence 3445555555555555555432 4445555555555555555555555555544331111221 23333334
Q ss_pred HHhcCChhhHHHHHHHHHHcC
Q 011362 144 FCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 144 ~~~~~~~~~a~~~~~~~~~~~ 164 (487)
|...|+.+.|..-|+..-+.|
T Consensus 125 yRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhC
Confidence 445555555555555554444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.56 Score=37.52 Aligned_cols=30 Identities=23% Similarity=0.169 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 204 AFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
..||.-+...+...|+.++|..+|+-....
T Consensus 237 TEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 237 TETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 356666667777777777777777666554
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.37 Score=41.69 Aligned_cols=229 Identities=11% Similarity=0.028 Sum_probs=136.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHH----HHHHhCCCCCccccccchHHHHHHH
Q 011362 33 LCAESRIMEAAALFTKLRVFG--CEPDVFTYTTLVNGLCRTSHTIVALNLF----EEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
+.+..+..+|+..|.+-+..- ......++..+..+..+.|.+++++..- +...+... ...--..|..+.
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~d-----s~~~~ea~lnla 90 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELED-----SDFLLEAYLNLA 90 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 456777888888777765431 0111224556667777888887765532 22222110 011234566666
Q ss_pred HHHHhcCChhHHHHHHHHHHhC-CCCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCChhhHHHHHH
Q 011362 107 DGLCKEGFVDKAKELLLQMKDK-NIKP---NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG-----VQPNVVTFNVIMD 177 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~ 177 (487)
+++-+.-++.+++.+-..-... |..| .-.....+..++...+.++++++.|+...+.. ......++..+..
T Consensus 91 r~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgs 170 (518)
T KOG1941|consen 91 RSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGS 170 (518)
T ss_pred HHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHH
Confidence 6666666666666665443322 2222 12234456777788888999999999886532 1123456778888
Q ss_pred HHHhCCChHHHHHHHHHHHHC----CCCCCH------HHHHHHHHHHHcCCCHhHHHHHHHHHHH----cCCCC-CHhhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQH----GVRPDA------FTYNTLLDGFCLTGRVNHAKELFVSMES----MGCKH-TVFSY 242 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~ 242 (487)
.|....++++|.-+..+..+. ++. |. .....|..++...|....|.+.-++..+ .|-.+ .....
T Consensus 171 lf~~l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~ 249 (518)
T KOG1941|consen 171 LFAQLKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCL 249 (518)
T ss_pred HHHHHHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 888999999888766554432 222 21 1223345566777888888877776543 33111 22334
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
..+.+.|...|+.+.|+.-|++...
T Consensus 250 ~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 250 LCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHhcccHhHHHHHHHHHHH
Confidence 5677888899999999888887654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.13 Score=38.33 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=50.9
Q ss_pred CCccchHHHHHHHHHhCCCCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTP--DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC 69 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 69 (487)
.|++++|.+.|+.+..+-+.. ...+.-.|+.+|.+.+++++|+..+++.++.++......|...+.+++
T Consensus 23 ~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 23 KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 489999999999999885332 244567789999999999999999999999864322233444444443
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.42 Score=40.93 Aligned_cols=151 Identities=17% Similarity=0.095 Sum_probs=92.7
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh----hHHHHHHHHHhcCCHH
Q 011362 216 LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV----IHNTLFVGLFEIHQVE 291 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~ 291 (487)
..|+..+|-..++++.+. .|.|...+...-.+|.-.|+.+.-...++++... ..++.. .-..+.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666776677777654 3666666777777777788877777777777653 122332 2233344455677788
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC---CCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 292 RAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK---CEFDIRAYNSLIDGLCKSGRLEIALELFR 368 (487)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 368 (487)
+|++.-++..+-+ +.|..........+...|+..++.++..+-...- .-.-...|-...-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 8888777777654 4556666667777777788888877776644211 00111223333444556677888888886
Q ss_pred h
Q 011362 369 S 369 (487)
Q Consensus 369 ~ 369 (487)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 4
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.12 Score=42.87 Aligned_cols=33 Identities=30% Similarity=0.462 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 431 SKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
+-++.++++|...|+.||..+-..++++|++.|
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~ 172 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWN 172 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhcccc
Confidence 456777777777777777777777777776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.57 Score=35.49 Aligned_cols=84 Identities=12% Similarity=0.047 Sum_probs=41.7
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC
Q 011362 314 TFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393 (487)
Q Consensus 314 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (487)
.++..+...+.+.....+++.+...+ +.++...+.++..|++. +..+..+.++. ..+......++..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~-~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY-DPQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH-CHHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444445555566666666555544 34555555666665544 23334444432 012222334555555555
Q ss_pred CHHHHHHHHHHH
Q 011362 394 QMDKARDLFLDM 405 (487)
Q Consensus 394 ~~~~A~~~~~~~ 405 (487)
-++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 666666655554
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.16 Score=42.86 Aligned_cols=79 Identities=14% Similarity=0.225 Sum_probs=53.4
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCCHHHHHHH
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK-----EINVMPDASIVSIV 455 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l 455 (487)
++..++..+...|+++.+...++++..... -+...|..++.+|.+.|+...|++.|+++. +.|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 455666667777777777777777776532 366677777777777777777777777665 35777777776666
Q ss_pred HHHHH
Q 011362 456 VDLLA 460 (487)
Q Consensus 456 ~~~~~ 460 (487)
.+.+.
T Consensus 234 ~~~~~ 238 (280)
T COG3629 234 EEILR 238 (280)
T ss_pred HHHhc
Confidence 66533
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.73 Score=35.41 Aligned_cols=121 Identities=13% Similarity=0.077 Sum_probs=88.5
Q ss_pred CccchHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HH--HHHHHHHHccCChHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAV-TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TY--TTLVNGLCRTSHTIVA 77 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~--~~l~~~~~~~g~~~~a 77 (487)
|+.++|+.-|..+.+.|...-+. ..-.......+.|+...|+..|.++-.....|-.. -. ..-.-.+...|.++..
T Consensus 72 ~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV 151 (221)
T COG4649 72 NKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDV 151 (221)
T ss_pred CCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHH
Confidence 67889999999999988553222 23334556778999999999999987764333322 11 1122345688999999
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 78 LNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
....+-+...+ -+-....-..|.-+-.+.|++..|.++|..+...
T Consensus 152 ~srvepLa~d~------n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 152 SSRVEPLAGDG------NPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHhhhccCCC------ChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 98888877665 3445566778888888999999999999998764
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2 Score=39.19 Aligned_cols=412 Identities=12% Similarity=0.064 Sum_probs=209.1
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHH
Q 011362 6 HGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG-LCRTSHTIVALNLFEEM 84 (487)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~ 84 (487)
+...+|+++..+ ++.|+..|...+..+-+.+.+.+...+|..|...+ +.++..|.....- |-...+.+.|..+|...
T Consensus 89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 456778888877 56799999999999988898999999999999875 4455555443333 33344499999999999
Q ss_pred HhCCCCCccccccchHHHHHHHHHHHh-----------cC-ChhHH-HHHHHH-HHhCCCCCCHhhHHHH---H--HHHH
Q 011362 85 ANGNGEFGVVCEPNTVTYTTIIDGLCK-----------EG-FVDKA-KELLLQ-MKDKNIKPNVVTYTSV---I--RGFC 145 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~g-~~~~a-~~~~~~-~~~~~~~~~~~~~~~l---~--~~~~ 145 (487)
.+.+ |.++..|....+.-.. .| +...- .++-.. .......++......- + ...-
T Consensus 167 LR~n-------pdsp~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~ 239 (568)
T KOG2396|consen 167 LRFN-------PDSPKLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAE 239 (568)
T ss_pred hhcC-------CCChHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHH
Confidence 9877 4455555443332110 00 00000 111000 0000011111110000 0 0000
Q ss_pred hcCChhhHH-HHHHHHHHcCCCCChhhHHHHHHH----HHh---------------CCChHHHHHHHHHHHHCCCCCCHH
Q 011362 146 YAKDWNEAK-RLFIEMMDQGVQPNVVTFNVIMDE----LCK---------------NGKMDEASRLLDLMIQHGVRPDAF 205 (487)
Q Consensus 146 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~----~~~---------------~~~~~~a~~~~~~~~~~~~~~~~~ 205 (487)
......+.. .+.+.+.. +.+-++.++..+..- +.. ..+.+....+|+...+. .|+..
T Consensus 240 ~~d~~kel~k~i~d~~~~-~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~s 316 (568)
T KOG2396|consen 240 KFDFLKELQKNIIDDLQS-KAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTES 316 (568)
T ss_pred HHHHHHHHHHHHHHHHhc-cCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHH
Confidence 001111111 12222222 223344444433321 111 11123444566666553 44666
Q ss_pred HHHHHHHHHHcCC------CHhHHHHHHHHHHHcC-C-CCCHhhHHHHHHHHHccCCHhH-HHHHHHHHHHCCCccChhh
Q 011362 206 TYNTLLDGFCLTG------RVNHAKELFVSMESMG-C-KHTVFSYSILINGYCKNKEIEG-ALSLYSEMLSKGIKPDVVI 276 (487)
Q Consensus 206 ~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~ 276 (487)
.|+..|..|...- .......+++.....+ . +.....|..+.-+++..+...+ |..+..+. +..+...
T Consensus 317 m~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~----f~~s~k~ 392 (568)
T KOG2396|consen 317 MWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTEL----FRDSGKM 392 (568)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHH----hcchHHH
Confidence 6666666554332 3334444555444332 1 2234456666666665554433 33333233 2335555
Q ss_pred HHHHHHHHHhc-CCHHHH-HHHHHHHHHcCCCCcHHhHHHHHHHHHhCCC-HhHH--HHHHHHHHHcCCCCChH-hHHHH
Q 011362 277 HNTLFVGLFEI-HQVERA-FKLFDEMQRNGVAADTWTYRTFIDGLCKNGY-IVEA--VELFHTLRILKCEFDIR-AYNSL 350 (487)
Q Consensus 277 ~~~l~~~~~~~-~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a--~~~~~~~~~~~~~~~~~-~~~~l 350 (487)
|..-++...+. .+++-. ...+......-..+....+.... .++ +... ..++..+...+ .++.. .-+.+
T Consensus 393 ~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~ 466 (568)
T KOG2396|consen 393 WQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKY 466 (568)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHH
Confidence 55444444322 122211 12222232221111111222211 222 2221 22334444444 34433 34667
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc--cCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 011362 351 IDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN--DGQMDKARDLFLDMEEN-AVVPNVITFDMLIRGFIRI 427 (487)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 427 (487)
+..+.+.|-+.+|...+..+... .+|+...|..++..-.. .-+...+..+++.|... | -++..|...+..-...
T Consensus 467 l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~ 543 (568)
T KOG2396|consen 467 LDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPL 543 (568)
T ss_pred HHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccC
Confidence 78888889999999999988876 36677777777654221 22377888888888754 5 5777787777766788
Q ss_pred CChhHHHHHHHHHHh
Q 011362 428 NEPSKVIELLHKMKE 442 (487)
Q Consensus 428 g~~~~a~~~~~~~~~ 442 (487)
|..+.+-.++.++..
T Consensus 544 g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 544 GRPENCGQIYWRAMK 558 (568)
T ss_pred CCcccccHHHHHHHH
Confidence 888888777777653
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.61 Score=40.46 Aligned_cols=231 Identities=10% Similarity=0.032 Sum_probs=139.9
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHH----HHHHHhCC-CCCCHhhHHHHHH
Q 011362 68 LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL----LLQMKDKN-IKPNVVTYTSVIR 142 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~-~~~~~~~~~~l~~ 142 (487)
+....+.++|+..+.+....-.+ ......++..+..+.++.|.+++++.. ++...+.. ...--..|..+.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~----~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSD----LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHH----HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777888777766553210 011234566677788888887766543 22222210 0112345667777
Q ss_pred HHHhcCChhhHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHH
Q 011362 143 GFCYAKDWNEAKRLFIEMMDQ-GVQP---NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV-----RPDAFTYNTLLDG 213 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~ 213 (487)
++-+.-++.+++.+-+.-... |..| .-.....+..++...+.++++++.|+...+--. -....++..|...
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 777777788887776655443 2222 112334466777888889999999988765311 1234578889999
Q ss_pred HHcCCCHhHHHHHHHHHHH----cCCCCCHh-----hHHHHHHHHHccCCHhHHHHHHHHHHH----CCCcc-ChhhHHH
Q 011362 214 FCLTGRVNHAKELFVSMES----MGCKHTVF-----SYSILINGYCKNKEIEGALSLYSEMLS----KGIKP-DVVIHNT 279 (487)
Q Consensus 214 ~~~~~~~~~a~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~~~~~~~ 279 (487)
|.+..|+++|.-+..+..+ .++..-.. ....|.-++...|..-.|.+.-++..+ .|-.+ -......
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 9999999999877766543 23221111 223344556677887777777766544 33222 2234556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 011362 280 LFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
+...|-..|+.+.|+.-|+....
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHHH
Confidence 67778889999998888876543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.6 Score=36.44 Aligned_cols=223 Identities=18% Similarity=0.091 Sum_probs=154.7
Q ss_pred cCChHHHHHHHHHHHhCCCCCcccccc--chHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCHhhHHHHHHHHHhc
Q 011362 71 TSHTIVALNLFEEMANGNGEFGVVCEP--NTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-NIKPNVVTYTSVIRGFCYA 147 (487)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~ 147 (487)
.+....+...+....... +. ....+......+...+.+..+...+...... ........+......+...
T Consensus 36 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (291)
T COG0457 36 LGELAEALELLEEALELL-------PNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL 108 (291)
T ss_pred HhhHHHHHHHHHHHHhcC-------ccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence 456666667777666654 22 3577777888888888888888888887652 2344566777777788888
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHHH-HHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHcCCCHhHHH
Q 011362 148 KDWNEAKRLFIEMMDQGVQPNVVTFNVIMD-ELCKNGKMDEASRLLDLMIQHGV--RPDAFTYNTLLDGFCLTGRVNHAK 224 (487)
Q Consensus 148 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 224 (487)
+++..+...+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+.
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 187 (291)
T COG0457 109 GKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEAL 187 (291)
T ss_pred hhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHH
Confidence 88999999998887754333 222333333 68889999999999988865321 123344444455567788999999
Q ss_pred HHHHHHHHcCCCC-CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011362 225 ELFVSMESMGCKH-TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN 303 (487)
Q Consensus 225 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (487)
..+....... +. ....+..+...+...++++.+...+......... ....+......+...+..+.+...+......
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 188 ELLEKALKLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHhhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9998887764 33 4567778888888888999999999888875332 2334444444555667788888888888775
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.86 Score=33.23 Aligned_cols=137 Identities=17% Similarity=0.178 Sum_probs=66.1
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhh---HHHHHHHHHhCCChH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVT---FNVIMDELCKNGKMD 186 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~ 186 (487)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+=+ -.|... ...++.+|...|.
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~-- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK-- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc--
Confidence 34577777777777766542 444455444444444444444444444322 122222 1223333333332
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 187 EASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 187 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
+.......+......|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.+.-
T Consensus 85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~AC 147 (161)
T PF09205_consen 85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEAC 147 (161)
T ss_dssp ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 22333444555666676676666766665432 5566666677777777777777777777766
Q ss_pred HCCCc
Q 011362 267 SKGIK 271 (487)
Q Consensus 267 ~~~~~ 271 (487)
+.|.+
T Consensus 148 ekG~k 152 (161)
T PF09205_consen 148 EKGLK 152 (161)
T ss_dssp HTT-H
T ss_pred HhchH
Confidence 66543
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.036 Score=29.65 Aligned_cols=32 Identities=13% Similarity=0.127 Sum_probs=23.2
Q ss_pred HHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 011362 11 LGRILKSCFTPDAVTFTSLIKGLCAESRIMEAA 43 (487)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 43 (487)
|+++++.. |.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 55666665 447777888888888888887775
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.11 E-value=1.1 Score=34.04 Aligned_cols=84 Identities=21% Similarity=0.098 Sum_probs=44.8
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.++..+...+.......+++.+...+ +.+...++.++..|++.+ ..+..+.+.. . .+......+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-------~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~ 77 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-------SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGK 77 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-------ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHH
Confidence 45555555666667777777666654 345566666776666543 2233333321 1 12223334555
Q ss_pred HHHhcCChhhHHHHHHHH
Q 011362 143 GFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~ 160 (487)
.|.+.+-++++.-++.++
T Consensus 78 ~c~~~~l~~~~~~l~~k~ 95 (140)
T smart00299 78 LCEKAKLYEEAVELYKKD 95 (140)
T ss_pred HHHHcCcHHHHHHHHHhh
Confidence 566666666666665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.35 Score=40.96 Aligned_cols=79 Identities=14% Similarity=0.180 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhHH
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD-----QGVQPNVVTFN 173 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 173 (487)
..++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 5677778888888888888888888887774 45777888888888888888888888877755 47777777766
Q ss_pred HHHHH
Q 011362 174 VIMDE 178 (487)
Q Consensus 174 ~l~~~ 178 (487)
.....
T Consensus 232 ~y~~~ 236 (280)
T COG3629 232 LYEEI 236 (280)
T ss_pred HHHHH
Confidence 66555
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.062 Score=29.20 Aligned_cols=26 Identities=8% Similarity=0.057 Sum_probs=18.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLR 50 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 50 (487)
+|..|...|.+.|++++|+++|++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35667777777777777777777744
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.92 E-value=3.9 Score=39.52 Aligned_cols=179 Identities=13% Similarity=0.049 Sum_probs=106.2
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHH-----hcCCHHHHHHHHHHHHh-------cCCCCCHHHHHHHHHHHHcc
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLC-----AESRIMEAAALFTKLRV-------FGCEPDVFTYTTLVNGLCRT 71 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 71 (487)
...|.+.++.....| ++.....+..+|. ..+|++.|+.+|+.+.+ .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888888776 4444444444443 44688889988888866 33 233455566666653
Q ss_pred C-----ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh-cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011362 72 S-----HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK-EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145 (487)
Q Consensus 72 g-----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (487)
. +.+.|..++.+....+ .|+.......+..... ..+...|.++|...-+.|. ...+..+..+|.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-------~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---~~A~~~la~~y~ 371 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-------NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---ILAIYRLALCYE 371 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-------CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC---hHHHHHHHHHHH
Confidence 3 5677888888888766 3444333333322222 2456788888888888774 333333444332
Q ss_pred ----hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 011362 146 ----YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV 200 (487)
Q Consensus 146 ----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 200 (487)
...+...|..++.+..+.| .|....-...+..+.. +.++.+.-.+..+.+.|.
T Consensus 372 ~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 372 LGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred hCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 2246778888888888776 2222222223333333 667776666666665544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=94.78 E-value=4.6 Score=39.70 Aligned_cols=188 Identities=14% Similarity=0.129 Sum_probs=107.0
Q ss_pred hHHHHHHHHH-hCCCCCC--HHhHHHHHHHHH-hcCCHHHHHHHHHHHHhcCCCCCHH-----HHHHHHHHHHccCChHH
Q 011362 6 HGFVVLGRIL-KSCFTPD--AVTFTSLIKGLC-AESRIMEAAALFTKLRVFGCEPDVF-----TYTTLVNGLCRTSHTIV 76 (487)
Q Consensus 6 ~A~~~~~~~~-~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~ 76 (487)
-|++.++.+. +...+|. +.++..++..+. ...+++.|...+++.....-.++.. ....++..+.+.+...
T Consensus 39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~- 117 (608)
T PF10345_consen 39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA- 117 (608)
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence 3677777777 3333333 345566677766 7789999999999876543233222 2234566666666665
Q ss_pred HHHHHHHHHhCCCCCccccccchHHHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCCHhhHHHHHHHHH--hcCCh
Q 011362 77 ALNLFEEMANGNGEFGVVCEPNTVTYTTI-IDGLCKEGFVDKAKELLLQMKDKN---IKPNVVTYTSVIRGFC--YAKDW 150 (487)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~~~~ 150 (487)
|...+++..+.-..++ ..+-...|..+ +..+...++...|.+.++.+...- ..|...++..++.+.. +.+..
T Consensus 118 a~~~l~~~I~~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~ 195 (608)
T PF10345_consen 118 ALKNLDKAIEDSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSP 195 (608)
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCc
Confidence 8888888766442110 11223334444 333333478999999888876532 2334444545554443 45556
Q ss_pred hhHHHHHHHHHHcCC---------CCChhhHHHHHHH--HHhCCChHHHHHHHHHHH
Q 011362 151 NEAKRLFIEMMDQGV---------QPNVVTFNVIMDE--LCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~ 196 (487)
+++.+.+..+..... .|...+|..++.. +...|++..+...++.+.
T Consensus 196 ~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 196 DDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 677777776633211 2234455555553 456777666666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.31 Score=40.61 Aligned_cols=105 Identities=18% Similarity=0.250 Sum_probs=66.1
Q ss_pred ccchHHHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh
Q 011362 96 EPNTVTYTTIIDGLCKE-----GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV 170 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 170 (487)
..+..+|...+..+... +.++-....+..|.+.|+.-|..+|+.|+..+-+.. +.|. .
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~-n 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQ-N 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccH-H
Confidence 34566676666666543 456666677777888888888888888877654321 1111 1
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 171 TFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
.+....-.|-+ +-+-++.++++|..+|+-||..+-..++.++.+.+-
T Consensus 127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 11111112211 234577888888888888888888888888877765
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.67 E-value=3.5 Score=37.88 Aligned_cols=60 Identities=12% Similarity=0.084 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
..+..++-+.|+.++|++.++++.+.... -.......|+.++...+.+.++..++.+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34566666777777777777777654322 1233556677777777777777777776543
|
The molecular function of this protein is uncertain. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=94.46 E-value=3 Score=36.24 Aligned_cols=133 Identities=14% Similarity=0.155 Sum_probs=72.9
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh--cC----ChhhHHHHHHHHHHcCC---CCChhhHHHHHHHHHhCCC-
Q 011362 115 VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY--AK----DWNEAKRLFIEMMDQGV---QPNVVTFNVIMDELCKNGK- 184 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~- 184 (487)
+++...+++.|.+.|..-+..+|.+....... .. ...+|..+|+.|++..+ .++..++..++.. ...+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566778888888887666555543332222 22 24577888888877632 2233344444332 2333
Q ss_pred ---hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcCCC--HhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 011362 185 ---MDEASRLLDLMIQHGVRPDAF--TYNTLLDGFCLTGR--VNHAKELFVSMESMGCKHTVFSYSILINGY 249 (487)
Q Consensus 185 ---~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (487)
.+.+..+|+.+.+.|...+.. ....++..+....+ ..++.++++.+.+.+++.....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 355667777777766654322 22222222222222 346667777777777777666665554443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.31 E-value=1.5 Score=32.08 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVM 446 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (487)
....+..+.....+|+-+.-.+++..+.+. -.+++..+..+..+|.+.|+..++.++++++-+.|++
T Consensus 86 se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 344556677788899999999999888764 3678888889999999999999999999999988853
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.058 Score=28.84 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=24.4
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAK 119 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 119 (487)
|++..+.+ |.+..+|+.+...|...|++++|+
T Consensus 2 y~kAie~~-------P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-------PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-------CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555554 677888888988888889888875
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.7 Score=34.40 Aligned_cols=93 Identities=15% Similarity=0.110 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH--HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC---CC----hHhH
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT--WTYRTFIDGLCKNGYIVEAVELFHTLRILKCE---FD----IRAY 347 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~----~~~~ 347 (487)
+..+...|.+.|+.+.|.+.+.++.+....+.. ..+..+++.....+++..+...+.++...-.. .+ ...+
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334444455555555555555554443322221 22334444444455555555444444321111 11 1111
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
..+ .+...+++..|-+.|-...
T Consensus 119 ~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHH--HHHHhchHHHHHHHHHccC
Confidence 111 2234567777766665554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.00 E-value=2.1 Score=32.73 Aligned_cols=51 Identities=24% Similarity=0.038 Sum_probs=23.3
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (487)
+.++.+++..++..+.-.. |..+..-..-...+...|++.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLR-P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLR-PEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4455555555555555432 11122212222334455555555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.16 Score=27.51 Aligned_cols=22 Identities=23% Similarity=0.229 Sum_probs=9.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHH
Q 011362 418 DMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
..|...|.+.|++++|.+++++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3444444444444444444444
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.2 Score=35.31 Aligned_cols=64 Identities=19% Similarity=0.338 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP--NVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...+..++..|.+.|+.+.|.+.|.++.+....+ -...+..+++.....+++..+...+.++..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3567777888888888888888888877764333 234566677777788888888777776654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.69 E-value=5.7 Score=36.60 Aligned_cols=164 Identities=10% Similarity=0.098 Sum_probs=94.3
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.++....+..+.+.-++.-.++.+.+ +.-...|..|..- ......++.+++++..+.|- ..+..--
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~-------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE----~~lg~s~- 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN-------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGE----ASLGKSQ- 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh-------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHH----Hhhchhh-
Confidence 35555566677777677777766643 2223444433321 23456788888887766531 1111000
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHcCCCHh
Q 011362 143 GFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR-PDAFTYNTLLDGFCLTGRVN 221 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~ 221 (487)
.....| ..++........|-...-..+..++-+.|+.++|++.+++|.+.... ....+...|+.++...+.+.
T Consensus 239 ~~~~~g------~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 239 FLQHHG------HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhccc------chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHH
Confidence 000011 11111222222223334455777778999999999999999875322 24557788999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HhhHHHHH
Q 011362 222 HAKELFVSMESMGCKHT-VFSYSILI 246 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~~-~~~~~~l~ 246 (487)
++..++.+..+...+.+ ...|+..+
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHH
Confidence 99999999875543333 23455433
|
The molecular function of this protein is uncertain. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.26 Score=26.16 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=21.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
.+|..++.+|...|++++|+..|+++++.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45677777788888888888888877765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.26 Score=26.07 Aligned_cols=29 Identities=17% Similarity=0.077 Sum_probs=20.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
..|..+..++...|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34666777777778888888777777765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.44 E-value=2.7 Score=32.16 Aligned_cols=58 Identities=19% Similarity=0.035 Sum_probs=35.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
++..-.+.++.+++..++.-+... .|... .-..-...++..|++.+|..+|+.+....
T Consensus 16 ~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~ 74 (160)
T PF09613_consen 16 VLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA 74 (160)
T ss_pred HHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence 344445667777777777777655 33332 22233445567777777777777776643
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.19 E-value=2.1 Score=33.87 Aligned_cols=134 Identities=10% Similarity=0.025 Sum_probs=88.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHH--HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTY--TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+..|..++.... .+.. +.....+++...+....-..+ ..+...+...+++++|...++.......+ -.....
T Consensus 54 S~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D----e~lk~l 127 (207)
T COG2976 54 SAQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKD----ENLKAL 127 (207)
T ss_pred HHHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchh----HHHHHH
Confidence 345666666543 4444 666666777665422222233 34567788899999999999987753310 011122
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
.-..|.+.....|.+++|+..++.....+. .......-...+...|+-++|..-|+...+.+
T Consensus 128 ~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 128 AALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 334566778889999999999988776543 33445556778889999999999999988875
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.16 E-value=12 Score=38.63 Aligned_cols=82 Identities=17% Similarity=0.147 Sum_probs=37.6
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChh--hHHHHHHHHH
Q 011362 208 NTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV--IHNTLFVGLF 285 (487)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~ 285 (487)
.+....+...+.+++|.-.|+..-+ ...-+.+|...|+|.+|+.+..++... .+.. +-..|...+.
T Consensus 943 ~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen 943 EAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLV 1010 (1265)
T ss_pred HHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHH
Confidence 3333444455555555555543321 122344555566666666665554321 1111 1134444455
Q ss_pred hcCCHHHHHHHHHHHH
Q 011362 286 EIHQVERAFKLFDEMQ 301 (487)
Q Consensus 286 ~~~~~~~a~~~~~~~~ 301 (487)
..+++-+|-++..+..
T Consensus 1011 e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HcccchhHHHHHHHHh
Confidence 5555555555554443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.15 E-value=3.8 Score=33.03 Aligned_cols=187 Identities=10% Similarity=0.007 Sum_probs=104.4
Q ss_pred ccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011362 70 RTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD 149 (487)
Q Consensus 70 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 149 (487)
..|-..-|.-=|.+..... |.-+.+||-+.-.+...|+++.|.+.|+...+.+.. ...+...-.-.+.-.|+
T Consensus 77 SlGL~~LAR~DftQaLai~-------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR 148 (297)
T COG4785 77 SLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGR 148 (297)
T ss_pred hhhHHHHHhhhhhhhhhcC-------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCc
Confidence 3444555555555555544 556788999998899999999999999998886432 22233333334456788
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHH-HHHHHHCCCCCCHHHHHHHHHH-HHcCCCHhHHHHHH
Q 011362 150 WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRL-LDLMIQHGVRPDAFTYNTLLDG-FCLTGRVNHAKELF 227 (487)
Q Consensus 150 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~ 227 (487)
+.-|.+-+...-+.... |+. -...+-.--..-++.+|..- .++..+. |..-|...+-. |...=..+.+.+-.
T Consensus 149 ~~LAq~d~~~fYQ~D~~-DPf-R~LWLYl~E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~ 222 (297)
T COG4785 149 YKLAQDDLLAFYQDDPN-DPF-RSLWLYLNEQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERL 222 (297)
T ss_pred hHhhHHHHHHHHhcCCC-ChH-HHHHHHHHHhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHH
Confidence 88888877776655322 211 11122222233455555543 3444333 33333322222 22111122211111
Q ss_pred HHHHHcC---CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCC
Q 011362 228 VSMESMG---CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGI 270 (487)
Q Consensus 228 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 270 (487)
..-...+ -..-..+|.-+...+...|+.++|..+|+-.+..++
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 1111000 011246888999999999999999999999887643
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.25 Score=26.23 Aligned_cols=26 Identities=15% Similarity=0.202 Sum_probs=11.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
|..++.+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 44444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=93.13 E-value=9.5 Score=37.52 Aligned_cols=199 Identities=17% Similarity=0.113 Sum_probs=112.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCH--HHHHHHHHHHH-ccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLR-VFGCEPDV--FTYTTLVNGLC-RTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
+...|..||.. |++.++-+. ....+|.. .++..++..+. ...+++.|...+++........+. ...
T Consensus 29 ~l~~Y~kLI~~---------ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~-~d~ 98 (608)
T PF10345_consen 29 QLKQYYKLIAT---------AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL-TDL 98 (608)
T ss_pred hHHHHHHHHHH---------HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch-HHH
Confidence 45556555543 566666666 33333433 34556677666 788999999999987554311000 000
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCCHhhHHHH-HHHHHhcCChhhHHHHHHHHHHcC---CCCCh
Q 011362 98 NTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----NIKPNVVTYTSV-IRGFCYAKDWNEAKRLFIEMMDQG---VQPNV 169 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~ 169 (487)
--..-..++..+.+.+... |...+++..+. +..+-...|..+ +..+...+++..|.+.++.+.... ..|..
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 1122345667777776555 88888876653 111222233333 333333479999999999886542 22333
Q ss_pred hhHHHHHHHH--HhCCChHHHHHHHHHHHHCC---------CCCCHHHHHHHHHHH--HcCCCHhHHHHHHHHHH
Q 011362 170 VTFNVIMDEL--CKNGKMDEASRLLDLMIQHG---------VRPDAFTYNTLLDGF--CLTGRVNHAKELFVSME 231 (487)
Q Consensus 170 ~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~ 231 (487)
.++..++.+. ...+..+++.+.++.+.... ..|-..++..++..+ ...|+++.+...++.+.
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3344444433 35566777777777664321 123455666666654 46677777777666653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=93.00 E-value=2.5 Score=33.01 Aligned_cols=95 Identities=16% Similarity=0.087 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHh---cCCHH-------HHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccC
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCA---ESRIM-------EAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTS 72 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~-------~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 72 (487)
++.|++.++.....+ |.|...++.-..++.. ..+.. +|+.-|++++.. .|+ ..++..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I--~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI--NPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHH
Confidence 467888888877776 5577765554444443 33333 444445555554 344 356666777665443
Q ss_pred C-----------hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 73 H-----------TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 73 ~-----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
. +++|...|++... ..|+...|+.-+...
T Consensus 84 ~l~~d~~~A~~~F~kA~~~FqkAv~--------~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 84 FLTPDTAEAEEYFEKATEYFQKAVD--------EDPNNELYRKSLEMA 123 (186)
T ss_dssp HH---HHHHHHHHHHHHHHHHHHHH--------H-TT-HHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHh--------cCCCcHHHHHHHHHH
Confidence 2 3445555555554 245556666555544
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.99 E-value=1.3 Score=37.64 Aligned_cols=103 Identities=13% Similarity=0.109 Sum_probs=59.5
Q ss_pred CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC---CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHH
Q 011362 304 GVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC---EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVV 380 (487)
Q Consensus 304 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 380 (487)
|.+....+....+..-....+++.++..+-+++...- .++. +-...++.+ -.-++++++.++..=++.|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 3344444455555554556677777777766653210 0111 111222222 2345667777777777777777777
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
+++.++..+.+.+++.+|..+.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 7777777777777777777776666543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.75 E-value=1.3 Score=35.37 Aligned_cols=74 Identities=7% Similarity=-0.126 Sum_probs=57.2
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHccCChHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFG---CEPDVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
-+.|+..|-.+...+.-.++.....|+..|. ..+.++++.++.+.++.. -.+|+..+..|+..+.+.|+++.|-
T Consensus 122 d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 122 DQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred cHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 3568888888887765556777777666665 778899999998887652 2567888999999999999988874
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.74 E-value=2.5 Score=33.49 Aligned_cols=87 Identities=10% Similarity=0.074 Sum_probs=66.3
Q ss_pred CCccchHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD----AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIV 76 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 76 (487)
.|+|++|..-|..++...++.. ...|..-..++.+.+.++.|+.--.+.++.+ +....++..-..+|-+...+++
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek~ee 186 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEKYEE 186 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhhHHH
Confidence 3889999999999999864433 2344445667889999999999988888875 3334444455667888899999
Q ss_pred HHHHHHHHHhCC
Q 011362 77 ALNLFEEMANGN 88 (487)
Q Consensus 77 a~~~~~~~~~~~ 88 (487)
|+.=|.++....
T Consensus 187 aleDyKki~E~d 198 (271)
T KOG4234|consen 187 ALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHhC
Confidence 999999998865
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.31 Score=25.76 Aligned_cols=26 Identities=15% Similarity=0.181 Sum_probs=11.2
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
|..+..++...|++++|++.|++..+
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 33444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.65 E-value=10 Score=36.68 Aligned_cols=178 Identities=13% Similarity=0.053 Sum_probs=100.2
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHH-----HhcCChhhHHHHHHHHHH-------cCCCCChhhHHHHHHHHHhC
Q 011362 115 VDKAKELLLQMKDKNIKPNVVTYTSVIRGF-----CYAKDWNEAKRLFIEMMD-------QGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 182 (487)
...+.++++...+.| +......+..++ ....+.+.|+.+|+.+.. .+ .......+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 457888888887776 333333333333 345688899998888866 44 333455666777664
Q ss_pred C-----ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHH----cc
Q 011362 183 G-----KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL-TGRVNHAKELFVSMESMGCKHTVFSYSILINGYC----KN 252 (487)
Q Consensus 183 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 252 (487)
. +...|..++...-..|.+ +.......+..... ..+...|.++|...-..|.. ..+-.+..+|. ..
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 556688888887776543 43333222222222 24567888888888777632 23333333332 23
Q ss_pred CCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 011362 253 KEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG 304 (487)
Q Consensus 253 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 304 (487)
.+.+.|..++.+..+.|.. ........+..+.. +.++.+...+..+...+
T Consensus 378 r~~~~A~~~~k~aA~~g~~-~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKGNP-SAAYLLGAFYEYGV-GRYDTALALYLYLAELG 427 (552)
T ss_pred CCHHHHHHHHHHHHHccCh-hhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence 4677888888887777622 22222222222333 55665555555555443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=92.56 E-value=7.2 Score=34.62 Aligned_cols=108 Identities=10% Similarity=-0.005 Sum_probs=71.6
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCC------------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHH
Q 011362 10 VLGRILKSCFTPDAVTFTSLIKGLCAESR------------IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVA 77 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 77 (487)
-|++.++.. |.|+.+|..++..--..-. .+.-+.+++++++.+ +.+...+...+..+.+..+.++.
T Consensus 7 el~~~v~~~-P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l 84 (321)
T PF08424_consen 7 ELNRRVREN-PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKL 84 (321)
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHH
Confidence 456666665 5589999888865433221 345577888877774 45666677777888888888888
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc---CChhHHHHHHHHHH
Q 011362 78 LNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE---GFVDKAKELLLQMK 126 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 126 (487)
.+.++++.... +.+...|...+...... -.++....+|.+..
T Consensus 85 ~~~we~~l~~~-------~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 85 AKKWEELLFKN-------PGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHHHHHHHC-------CCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 88888888765 45677777777665442 23555655555543
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=92.51 E-value=7.8 Score=35.44 Aligned_cols=125 Identities=10% Similarity=0.084 Sum_probs=83.6
Q ss_pred HHHHHhcCChhHHHH-HHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 106 IDGLCKEGFVDKAKE-LLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
|.--...|++..|-+ ++..+... +.++.........+...|+++.+.+.+...... +.....+...+++...+.|+
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r 372 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLAR 372 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhh
Confidence 333344577666544 44444443 223333334445566789999999988776543 33355677788899999999
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
++.|...-..|+...++ ++.+........-..|-++++...++++...+
T Consensus 373 ~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 373 WREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 99999999999887665 55544444444456677889999888887654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=91.98 E-value=14 Score=36.78 Aligned_cols=223 Identities=15% Similarity=0.097 Sum_probs=114.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHh-------hHHHH-HHHHHhcCChhhHHHHHHHHHHcC----CCCChhhHHHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVV-------TYTSV-IRGFCYAKDWNEAKRLFIEMMDQG----VQPNVVTFNVIM 176 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~ 176 (487)
.....++.+|..++.++...-..|+.. .|+.+ .......|++++|.++.+.....- ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888876542222211 23322 223345788899988888776541 223455566677
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH---H--HHHHHcCCCHh--HHHHHHHHHHHcC---CCC---CHhhHH
Q 011362 177 DELCKNGKMDEASRLLDLMIQHGVRPDAFTYNT---L--LDGFCLTGRVN--HAKELFVSMESMG---CKH---TVFSYS 243 (487)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~~--~a~~~~~~~~~~~---~~~---~~~~~~ 243 (487)
.+..-.|++++|..+.....+..-..+...+.. + ...+...|+.. +....+....... .+. -..++.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 778888999999888876665422223332222 2 23345666332 2233333332211 011 122334
Q ss_pred HHHHHHHccCCHhHHHHHHHHHHH----CCCccChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----cHHhHH
Q 011362 244 ILINGYCKNKEIEGALSLYSEMLS----KGIKPDVVI--HNTLFVGLFEIHQVERAFKLFDEMQRNGVAA----DTWTYR 313 (487)
Q Consensus 244 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~ 313 (487)
.+..++.+ .+.+..-...-.+ ....|-... +..++......|+.++|...+.++......+ +..+-.
T Consensus 585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~ 661 (894)
T COG2909 585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA 661 (894)
T ss_pred HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 44444444 3333322222221 112222222 2356777778899999988888876543222 211111
Q ss_pred HH--HHHHHhCCCHhHHHHHHHH
Q 011362 314 TF--IDGLCKNGYIVEAVELFHT 334 (487)
Q Consensus 314 ~l--~~~~~~~~~~~~a~~~~~~ 334 (487)
.. +......|+...+.....+
T Consensus 662 ~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 662 YKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHhhHHHhcccCCHHHHHHHHHh
Confidence 22 2233456777777666655
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.9 Score=33.64 Aligned_cols=110 Identities=19% Similarity=0.115 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc----------CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 39 IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT----------SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 39 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|+.|.+.++.-...+ +.|...++.-..++... ..+++|+.-|++....+ |....++..+..+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-------P~~hdAlw~lGnA 78 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-------PNKHDALWCLGNA 78 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--------TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-------CchHHHHHHHHHH
Confidence 556677666655554 56666655544444322 23556777777777755 4456778788777
Q ss_pred HHhcC----C-------hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 109 LCKEG----F-------VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 109 ~~~~g----~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
|...+ + +++|.+.|++.... .|+...|+.-+... .+|-.+..++.+++
T Consensus 79 ~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 79 YTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 76643 2 44555555555543 57777777766655 24556666665553
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.82 E-value=5 Score=31.21 Aligned_cols=32 Identities=16% Similarity=0.071 Sum_probs=14.4
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 48 KLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 48 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.+.+.+++|+...+..++..+.+.|++....+
T Consensus 19 Sl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q 50 (167)
T PF07035_consen 19 SLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ 50 (167)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 33334444444444444444444444443333
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.75 E-value=5.1 Score=31.16 Aligned_cols=122 Identities=16% Similarity=0.215 Sum_probs=50.4
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNV 174 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 174 (487)
++++...+..++..+.+.|++.....+ .+.++-+|.......+-.+ .+....+.++--+|... =...+..
T Consensus 25 i~~~~~L~~lli~lLi~~~~~~~L~ql----lq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR----L~~~~~~ 94 (167)
T PF07035_consen 25 IPVQHELYELLIDLLIRNGQFSQLHQL----LQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR----LGTAYEE 94 (167)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHH----HhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH----hhhhHHH
Confidence 455555666666666666654333322 2333333333332222221 11222333333333221 0012344
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 175 IMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 175 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
++..+...|++-+|+++.+..... +......++++....+|...-..+++-.
T Consensus 95 iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 95 IIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 455555566666666655543221 1111233444445555544444444433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.53 E-value=5.9 Score=31.45 Aligned_cols=125 Identities=13% Similarity=0.121 Sum_probs=84.1
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch-HH--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT-VT--YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
|..++.... .+.+ +.....+++...+ +.+. .. -..+...+...|++++|...++..... |....+
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n-------~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~---t~De~l 124 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQAN-------GKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ---TKDENL 124 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhc-------cccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc---chhHHH
Confidence 444444432 3333 4555556666655 2233 23 334567788999999999999988754 223333
Q ss_pred -----HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 011362 138 -----TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHG 199 (487)
Q Consensus 138 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 199 (487)
..|.+.....|.+++|+.+++.....+. .......-...+...|+-++|..-|...+..+
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3356778899999999999998766532 22234445668999999999999999998875
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=91.53 E-value=3.4 Score=28.66 Aligned_cols=60 Identities=15% Similarity=0.232 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 397 KARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 397 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+..- .+...+|..++.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 455556666666666777777777777777777777777777666432 222335555554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.44 E-value=3.4 Score=32.81 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=41.5
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc
Q 011362 68 LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA 147 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 147 (487)
+...|++++|..-|..++..-+... .......|..-..++.+.+.++.|+.-..+.++.+. ........-..+|.+.
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~--~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTS--TEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM 181 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCcccc--HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence 3445555555555555554431100 001112333334445555555555555555554421 1222222333445555
Q ss_pred CChhhHHHHHHHHHHc
Q 011362 148 KDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 148 ~~~~~a~~~~~~~~~~ 163 (487)
..+++|+.-|+++.+.
T Consensus 182 ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 182 EKYEEALEDYKKILES 197 (271)
T ss_pred hhHHHHHHHHHHHHHh
Confidence 5555665555555553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.39 E-value=4.6 Score=37.99 Aligned_cols=150 Identities=17% Similarity=0.170 Sum_probs=86.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch-HHHHHHHHHHHhc
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT-VTYTTIIDGLCKE 112 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 112 (487)
.-.|+++.|..++-.+. ....+.++.-+-++|-.++|+++- +|. .-|. ...+.
T Consensus 597 vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------------~D~d~rFe----lal~l 650 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------------TDPDQRFE----LALKL 650 (794)
T ss_pred hhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------------CChhhhhh----hhhhc
Confidence 44567776666543322 233445566666677777666532 121 1222 22355
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHH
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLL 192 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 192 (487)
|+++.|.++..+.. +..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-
T Consensus 651 grl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 651 GRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred CcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 77777777654432 456677788888888888888887776543 445666666667666555555
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 193 DLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 193 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
....+.|.. |.. ..++...|+++++.+++..-
T Consensus 716 ~~~~~~g~~-N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 716 SLAKKQGKN-NLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHhhccc-chH-----HHHHHHcCCHHHHHHHHHhc
Confidence 555555432 221 23345567777777766443
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.29 E-value=11 Score=34.69 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=25.6
Q ss_pred cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 112 EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 112 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
.+.++...+.+..+...|.......++.-...|.+.|..
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~t 68 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCT 68 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccc
Confidence 456777777777777776555555566666666666654
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.28 E-value=9.4 Score=33.30 Aligned_cols=129 Identities=12% Similarity=0.176 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHh--c----CCHHHHHHHHHHHHHcCCC---CcHHhHHHHHHHHHhCCC---
Q 011362 257 GALSLYSEMLSKGIKPDVVIHNTLFVGLFE--I----HQVERAFKLFDEMQRNGVA---ADTWTYRTFIDGLCKNGY--- 324 (487)
Q Consensus 257 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~----~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~--- 324 (487)
..+.+++.+.+.|+..+..++......... . ....++..+++.|++...- ++...+..++.. ..++
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~ 157 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEE 157 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHH
Confidence 344556666666666555444332222211 1 1235667777777765322 222333333222 2222
Q ss_pred -HhHHHHHHHHHHHcCCCCC--hHhHHHHHHHHHhcCC--HHHHHHHHHhccCCCCCCcHHHHHHHHH
Q 011362 325 -IVEAVELFHTLRILKCEFD--IRAYNSLIDGLCKSGR--LEIALELFRSLPCGVLVPNVVTYSIMIG 387 (487)
Q Consensus 325 -~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 387 (487)
.+.++.+|+.+.+.|+..+ ......++..+..... ..++.++++.+.+.++++....|..++-
T Consensus 158 l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 158 LAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 3455666666666555432 2333333332222212 3466777777777777766666655543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=91.25 E-value=0.59 Score=26.13 Aligned_cols=28 Identities=21% Similarity=0.221 Sum_probs=20.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRV 51 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 51 (487)
.+++.|...|...|++++|..++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777788888888877777654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.02 E-value=4.2 Score=34.86 Aligned_cols=128 Identities=13% Similarity=0.094 Sum_probs=86.5
Q ss_pred HHHHHHccCCHhHHHHHHHHHHH----------CCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCcHHh
Q 011362 245 LINGYCKNKEIEGALSLYSEMLS----------KGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG---VAADTWT 311 (487)
Q Consensus 245 l~~~~~~~~~~~~a~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~ 311 (487)
|..+|.....|+.-....-.+-. .|.+.+..+...++.......+++.+...+-++.... ..++ .+
T Consensus 25 LsS~fs~e~~w~~r~~~~~kla~~g~~~~kkF~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~-~~ 103 (418)
T KOG4570|consen 25 LSSAFSDEHKWEAREKEHYKLADLGSLMDKKFERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRN-WT 103 (418)
T ss_pred hHHHhhhhhhhhHHHHHHHHHhcccccchhhhhcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcc-cc
Confidence 45556666666554443322222 2344455566666666667788888888887776541 1111 12
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 011362 312 YRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV 374 (487)
Q Consensus 312 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 374 (487)
....++.+. .-++++++.++..-+..|+-||..+++.+++.+.+.+++.+|..+...|...+
T Consensus 104 ~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 104 IHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 233344333 45677999999998999999999999999999999999999999887776543
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.88 E-value=2.1 Score=29.25 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=48.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 38 RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 38 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
+.-++.+.++.+.....-|++.+..+.+++|.+.+++..|.++|+.+...- ..+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-------~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-------GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cCchhhHHHHHH
Confidence 445677788888888888999999999999999999999999999887543 223445555543
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.79 E-value=13 Score=34.18 Aligned_cols=108 Identities=17% Similarity=-0.011 Sum_probs=61.6
Q ss_pred HHHhCCCHhHHHHHHHHHHH---cCCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHhccC-------CCCCCc----
Q 011362 318 GLCKNGYIVEAVELFHTLRI---LKCEFD-----IRAYNSLIDGLCKSGRLEIALELFRSLPC-------GVLVPN---- 378 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~~~~---- 378 (487)
.+.-.|++.+|.+++...-- .|...+ -..||.+...+.+.|.+..+..+|.+..+ .|++|.
T Consensus 249 ~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~t 328 (696)
T KOG2471|consen 249 LEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFT 328 (696)
T ss_pred HHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCccee
Confidence 34456777777777654321 111112 12345555555666666666666655542 233332
Q ss_pred ------H-HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011362 379 ------V-VTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRI 427 (487)
Q Consensus 379 ------~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (487)
. .+|| ..-.|...|++-.|.+.|.+.... +.-++..|..+..+|...
T Consensus 329 ls~nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 329 LSQNKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhcccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence 1 1233 334567788888888888877664 455777888888777643
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.40 E-value=0.77 Score=25.61 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=13.8
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
+++.+...|...|++++|..++++..
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555553
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=90.27 E-value=0.61 Score=26.63 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=13.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHh
Q 011362 420 LIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
+.++|...|+.+.|.+++++...
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHH
Confidence 44555555555555555555554
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=12 Score=32.44 Aligned_cols=138 Identities=14% Similarity=0.061 Sum_probs=82.3
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHhccCCCCCCcHHHHHHHH
Q 011362 308 DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG-RLEIALELFRSLPCGVLVPNVVTYSIMI 386 (487)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 386 (487)
+..+-...+.++.+.++ .++...+-.+.+ .++...-...+.++...+ +...+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 44555556666666665 345555555554 234444444445555432 23455555555553 34666666777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 011362 387 GGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAK 461 (487)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (487)
.++.+.|+ ..|...+-+..+.+ + .....+.++...|+. +|...+.++.+. .||..+....+++|.+
T Consensus 214 ~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 214 IGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR 279 (280)
T ss_pred HHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence 77777777 45666666665532 2 234566777788875 688888888763 3577777777777654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=90.00 E-value=0.7 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.102 Sum_probs=19.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
+-.+..++.+.|++++|.+.|+++++.
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 344566777777777787777777765
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=89.89 E-value=6.9 Score=31.38 Aligned_cols=74 Identities=12% Similarity=-0.083 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHH
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKA 118 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 118 (487)
+|.+.|-.+...+.--++.....+...|. ..+.+++++++....+..... -.+|+..+..|+..+.+.|+++.|
T Consensus 124 ~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~---~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 124 EALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPD---DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHhcchhhh
Confidence 44444444444433333333333333332 344455555544444432110 133444555555555555544443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.15 E-value=11 Score=35.71 Aligned_cols=45 Identities=24% Similarity=0.180 Sum_probs=22.5
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
+.|+++.|.++..+. .+..-|..|.++....+++..|.+.|.+..
T Consensus 649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 445555555444332 133445555555555555555555555444
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=89.03 E-value=14 Score=31.68 Aligned_cols=87 Identities=11% Similarity=0.096 Sum_probs=64.1
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH-----HHhcCCCCCH
Q 011362 376 VPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN-AVVPNVITFDMLIRGFIRINEPSKVIELLHK-----MKEINVMPDA 449 (487)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~ 449 (487)
.++..+...++..++..+++.+-.++|...... +..-|..-|..+++.....|+..-...+..+ +++.|+..+.
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~ 278 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTD 278 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCH
Confidence 566677778888888888888888888877655 4555777788888888888888777777665 2356777777
Q ss_pred HHHHHHHHHHHhc
Q 011362 450 SIVSIVVDLLAKN 462 (487)
Q Consensus 450 ~~~~~l~~~~~~~ 462 (487)
..-..+-+.+.+.
T Consensus 279 ~L~~~L~~LF~~v 291 (292)
T PF13929_consen 279 ELRSQLSELFKKV 291 (292)
T ss_pred HHHHHHHHHHHhc
Confidence 7777766666543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=88.99 E-value=1.3 Score=23.27 Aligned_cols=28 Identities=21% Similarity=0.072 Sum_probs=20.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
+|..+...|...|++++|...|++..+.
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4666777777777777777777776654
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.60 E-value=18 Score=32.58 Aligned_cols=65 Identities=22% Similarity=0.106 Sum_probs=47.1
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC---ChHhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 011362 308 DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEF---DIRAYNSLIDGLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (487)
...++..++..+.+.|.++.|...+..+...+... .+.....-+......|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44667788888888999999998888887643211 344444556666778888888888887776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.45 E-value=5.2 Score=32.39 Aligned_cols=79 Identities=16% Similarity=0.074 Sum_probs=58.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
.+..++.+.+.+...+|+...+.-.+.. +.|...-..++..++-.|++++|..-++-.-+..+. ..+....|..+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~----~t~~a~lyr~l 78 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ----DTVGASLYRHL 78 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc----cchHHHHHHHH
Confidence 4556777888999999999888877663 455666778899999999999998888777665422 24456677777
Q ss_pred HHHH
Q 011362 106 IDGL 109 (487)
Q Consensus 106 ~~~~ 109 (487)
|.+-
T Consensus 79 ir~e 82 (273)
T COG4455 79 IRCE 82 (273)
T ss_pred HHHH
Confidence 7653
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=88.26 E-value=35 Score=35.49 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh----HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHH
Q 011362 279 TLFVGLFEIHQVERAFKLFDEMQRNGVAADTWT----YRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGL 354 (487)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 354 (487)
.......+++.+..|+.++ .|+... |......+.....+++|.-.|+..-+. .-.+.+|
T Consensus 913 e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~ 975 (1265)
T KOG1920|consen 913 ECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAY 975 (1265)
T ss_pred HHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHH
Confidence 3333344455555555443 344433 344444555667777777766654321 2345677
Q ss_pred HhcCCHHHHHHHHHhccCCCCCCcHH--HHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 355 CKSGRLEIALELFRSLPCGVLVPNVV--TYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 355 ~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
...|++.+|..+..++... -+.. +-..|+.-+..++++-+|-++..+...
T Consensus 976 ~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 976 KECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 7888888888887777632 1221 225566777778888888888777664
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=88.10 E-value=9.2 Score=32.36 Aligned_cols=89 Identities=12% Similarity=0.054 Sum_probs=63.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
.-|+++...++|.+++.+.-+--+..-+..+.+...-|-.|.+.+.+..+.++-....+..+ ......|..++.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~------Nq~lp~y~~vaE 161 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPS------NQSLPEYGTVAE 161 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcc------cCCchhhHHHHH
Confidence 34788999999999888765554432233455566667788899999999998888887652 233445777766
Q ss_pred HHHh-----cCChhHHHHHH
Q 011362 108 GLCK-----EGFVDKAKELL 122 (487)
Q Consensus 108 ~~~~-----~g~~~~a~~~~ 122 (487)
.|.. .|.+++|+++.
T Consensus 162 LyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 162 LYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHhccccHHHHHHHH
Confidence 6554 68888888876
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.98 E-value=6.8 Score=26.94 Aligned_cols=63 Identities=14% Similarity=0.192 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
+.-++.+-++.+....+.|++....+.+++|.+.+|+.-|.++++-.+..- ..+..+|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHH
Confidence 344556666666666677777777777777777777777777777666321 224445655554
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=87.57 E-value=10 Score=28.64 Aligned_cols=56 Identities=16% Similarity=0.067 Sum_probs=36.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..-...++++++..++..|.-. .|+.. .-..-...+...|++.+|..+|+.+.+..
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3344578888888888887765 33322 22233445677888888888888887754
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=87.46 E-value=1 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.295 Sum_probs=12.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 011362 27 TSLIKGLCAESRIMEAAALFT 47 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~ 47 (487)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.42 E-value=15 Score=30.27 Aligned_cols=62 Identities=10% Similarity=0.032 Sum_probs=29.5
Q ss_pred HHHHHHhc-CChhHHHHHHHHHHhC--CCCCC---HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 011362 105 IIDGLCKE-GFVDKAKELLLQMKDK--NIKPN---VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ 166 (487)
Q Consensus 105 l~~~~~~~-g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 166 (487)
+...|-.. .++++|+..|+..-+. |-..+ ...+..+...-...+++.+|+++|++.......
T Consensus 119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444333 4556666666554332 11111 112222333344566677777777776655433
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.37 E-value=5.1 Score=32.41 Aligned_cols=75 Identities=16% Similarity=0.125 Sum_probs=48.1
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHH
Q 011362 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN--IKPNVVTYTS 139 (487)
Q Consensus 62 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ 139 (487)
...+..+.+.++..+++...+.-.+.. |.+...-..++..++-.|++++|..-++..-+.. ..+-...|..
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkak-------Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~ 77 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAK-------PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRH 77 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC-------CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHH
Confidence 344556667777888888777776665 5566667777777888888888877666554431 2223445555
Q ss_pred HHHH
Q 011362 140 VIRG 143 (487)
Q Consensus 140 l~~~ 143 (487)
++++
T Consensus 78 lir~ 81 (273)
T COG4455 78 LIRC 81 (273)
T ss_pred HHHH
Confidence 5544
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.35 E-value=32 Score=33.95 Aligned_cols=102 Identities=14% Similarity=0.025 Sum_probs=67.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEP---DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
+..+.+.+.+++|+.+.+..... .| -.......+..+...|++++|-...-.|... +..-|...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----------~~~eWe~~V 430 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----------NAAEWELWV 430 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----------hHHHHHHHH
Confidence 56677888888888877665432 33 2345667778888889999988888888753 466777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh
Q 011362 107 DGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY 146 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 146 (487)
..+...++......+ +.......+..+|..++..+..
T Consensus 431 ~~f~e~~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 431 FKFAELDQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred HHhccccccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 777766665543333 3332222456677777777665
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.25 E-value=58 Score=36.92 Aligned_cols=60 Identities=10% Similarity=-0.062 Sum_probs=41.5
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccC
Q 011362 310 WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPC 372 (487)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 372 (487)
.+|....+.....|+++.|...+-...+.+ -+..+...+..+...|+...|+.++++...
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 556666666667888888877776666554 234455566667778888888888877664
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.14 E-value=2 Score=22.53 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=13.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
|..+...|...|++++|...|++..+
T Consensus 4 ~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 4 YYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444555555555555555555443
|
... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.04 E-value=18 Score=30.88 Aligned_cols=71 Identities=13% Similarity=0.099 Sum_probs=54.5
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCCHHHHH
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK-----EINVMPDASIVS 453 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~ 453 (487)
++.....|..+|.+.+|..+-++.+... +.+...+-.++..+...||--.+.+-++++. +.|+..|..+..
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee 357 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE 357 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence 4556677888999999999999988753 3466677788889999999888888777775 467777766654
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.68 E-value=36 Score=33.87 Aligned_cols=372 Identities=10% Similarity=0.002 Sum_probs=174.6
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH---HccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGL---CRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
-+...+..|+..+.+.|++++....-..|.+.- +.++..|...+... ...+....+..+|++..... .
T Consensus 111 y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy--------~ 181 (881)
T KOG0128|consen 111 YKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY--------N 181 (881)
T ss_pred cchHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc--------c
Confidence 356677889999999999988877777776653 45556665544433 34577888899999888755 2
Q ss_pred chHHHHHHHHHHH-------hcCChhHHHHHHHHHHhC-CCCC--CHhhHHH---HHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 98 NTVTYTTIIDGLC-------KEGFVDKAKELLLQMKDK-NIKP--NVVTYTS---VIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 98 ~~~~~~~l~~~~~-------~~g~~~~a~~~~~~~~~~-~~~~--~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
++..|.-.+..+. ..++++....+|++.+.. |... -...|.. +-..|..+-..++...++..-...+
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred cchHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 3444444443332 346677888888877653 2211 1222322 2233444444566666666655543
Q ss_pred CCCChhhHHHHHHHHHh-------CCChHHHHHH-------HHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHH
Q 011362 165 VQPNVVTFNVIMDELCK-------NGKMDEASRL-------LDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSM 230 (487)
Q Consensus 165 ~~~~~~~~~~l~~~~~~-------~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 230 (487)
. |..+-..-+.-..+ ..+++.+.+- ++...+. ..+-...|..++..+-..|++-....+++++
T Consensus 262 ~--D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~ 338 (881)
T KOG0128|consen 262 L--DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERA 338 (881)
T ss_pred c--hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 2 22221111111111 1122222222 2222221 1222345566666777777776666666665
Q ss_pred HHcCCCCCHhhHHHHHHHH-HccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHc-----
Q 011362 231 ESMGCKHTVFSYSILINGY-CKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQV-ERAFKLFDEMQRN----- 303 (487)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~----- 303 (487)
.... ..+...|....... ...+-.+.+...+...... ++-...+|...+-++.+.+.. ......|......
T Consensus 339 ~~E~-~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~ 416 (881)
T KOG0128|consen 339 VAEM-VLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELH 416 (881)
T ss_pred HHhc-cccHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHH
Confidence 4332 12222221111000 0011111222222221111 000111222222222222111 1111111111111
Q ss_pred ----------CCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHH-HhcCCHHHHHHHHHhccC
Q 011362 304 ----------GVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGL-CKSGRLEIALELFRSLPC 372 (487)
Q Consensus 304 ----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~ 372 (487)
+...+...|..+- ..+..|...|.........+............ ...++.+.+..+|+.+..
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr------~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLR------AAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHH------HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 1111111122211 12444555554444332223333333333333 346789999999998887
Q ss_pred CCCCCcHH-HHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 011362 373 GVLVPNVV-TYSIMIGGLCNDGQMDKARDLFLDMEENAVVPN 413 (487)
Q Consensus 373 ~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 413 (487)
.+ .-+.. .|...+..-...|+...+..+++.+...-..|+
T Consensus 491 y~-~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 491 YG-GGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred CC-cchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 65 22333 565566666667888888888888776545554
|
|
| >KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=86.27 E-value=8.3 Score=28.00 Aligned_cols=59 Identities=15% Similarity=0.277 Sum_probs=33.3
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 398 ARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 398 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
..+-++.+....+.|++.....-+++|.+.+|+.-|.++++-.+.. ..+...+|..+++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 3444555555556666666666666666666666666666666532 2333334544443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=86.20 E-value=13 Score=28.22 Aligned_cols=52 Identities=17% Similarity=0.078 Sum_probs=26.7
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
..++++++..++..+.-.. |.....-..-...+...|++++|..+|+.+.+.
T Consensus 22 ~~~d~~D~e~lLdALrvLr-P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLR-PNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred hcCCHHHHHHHHHHHHHhC-CCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3566666666666665442 111111112223345666666666666666654
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.10 E-value=9.3 Score=26.61 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=48.9
Q ss_pred HHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 26 FTSLIKGLCAESRI--MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 26 ~~~l~~~~~~~g~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
|.+--..+....+. -+..+-++.+.....-|++.+..+.+++|.+.+++..|.++|+.+...- ......|.
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-------~~~~~~Y~ 83 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-------GNKKEIYP 83 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-------TT-TTHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-------cChHHHHH
Confidence 33333444444433 3677788888888888999999999999999999999999999888754 22233566
Q ss_pred HHHH
Q 011362 104 TIID 107 (487)
Q Consensus 104 ~l~~ 107 (487)
.+++
T Consensus 84 ~~lq 87 (108)
T PF02284_consen 84 YILQ 87 (108)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.98 E-value=6.3 Score=34.27 Aligned_cols=54 Identities=7% Similarity=-0.073 Sum_probs=27.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
.-|.++|.+++|+..|.+..... +-++..+..-..+|.+..++..|..=.+...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555566666666665554432 2244555555555555555555544444433
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=85.75 E-value=5.8 Score=34.48 Aligned_cols=94 Identities=15% Similarity=-0.020 Sum_probs=60.9
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCH
Q 011362 316 IDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQM 395 (487)
Q Consensus 316 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (487)
..-|.++|.+++|+..|....... +.++..+..-..+|.+...+..|..-...++..+ ..-...|..-+.+-...|..
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhhH
Confidence 345888889999999888877654 4477777777888888888888777666665432 11122344444444445666
Q ss_pred HHHHHHHHHHHhCCCCCC
Q 011362 396 DKARDLFLDMEENAVVPN 413 (487)
Q Consensus 396 ~~A~~~~~~~~~~~~~~~ 413 (487)
.+|.+-++..++ +.|+
T Consensus 182 ~EAKkD~E~vL~--LEP~ 197 (536)
T KOG4648|consen 182 MEAKKDCETVLA--LEPK 197 (536)
T ss_pred HHHHHhHHHHHh--hCcc
Confidence 666666666665 3455
|
|
| >KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=85.43 E-value=41 Score=33.45 Aligned_cols=370 Identities=12% Similarity=0.031 Sum_probs=182.0
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCC
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC---KEGFVDKAKELLLQMKDKNIKPN 133 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~~~~~~ 133 (487)
+...+..|+..+.+.|++++....-..|...- |.++..|...+.... ..+....+..+|++....-. +
T Consensus 112 ~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~-------pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy~--~ 182 (881)
T KOG0128|consen 112 KYAQMVQLIGLLRKLGDLEKLRQARLEMSEIA-------PLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDYN--S 182 (881)
T ss_pred chHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-------CCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhcccc--c
Confidence 44567788999999999998877777777754 667788877766443 34667778888887765422 4
Q ss_pred HhhHHHHHHHHH-------hcCChhhHHHHHHHHHHc-CCCCC--hh---hHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 011362 134 VVTYTSVIRGFC-------YAKDWNEAKRLFIEMMDQ-GVQPN--VV---TFNVIMDELCKNGKMDEASRLLDLMIQHGV 200 (487)
Q Consensus 134 ~~~~~~l~~~~~-------~~~~~~~a~~~~~~~~~~-~~~~~--~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 200 (487)
+..|.-.+..+. ..++++....+|.+.... |...+ .. .|..+-..|...-..++...++..-+..+.
T Consensus 183 v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~ 262 (881)
T KOG0128|consen 183 VPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPL 262 (881)
T ss_pred chHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence 444544444333 345677778888877653 22111 11 222222344444445666777766665542
Q ss_pred CCCHHHHHHHHHHHH-------cCCCHhHHHHHHHHH-------HHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 201 RPDAFTYNTLLDGFC-------LTGRVNHAKELFVSM-------ESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 201 ~~~~~~~~~l~~~~~-------~~~~~~~a~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
|..+-..-+.-.. ...+++.+..-+... ... .++--..|..++......|++-.....++++.
T Consensus 263 --D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~-~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~ 339 (881)
T KOG0128|consen 263 --DEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQK-EPIKDQEWMSYIDFEKKSGDPVRIQLIEERAV 339 (881)
T ss_pred --hhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 2222111111111 122333333332222 111 13334456777777788888877777777766
Q ss_pred HCCCccChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHH-HHHHHHHH-------
Q 011362 267 SKGIKPDVVIHNTLFVGLF--EIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEA-VELFHTLR------- 336 (487)
Q Consensus 267 ~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~------- 336 (487)
..... +...|.... .|. ..+-.+.+...+.....+ .+....++...+.++.+.+..... ...+....
T Consensus 340 ~E~~~-~~~~wi~y~-~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~ 416 (881)
T KOG0128|consen 340 AEMVL-DRALWIGYG-VYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELH 416 (881)
T ss_pred Hhccc-cHHHHhhhh-hhcccccccccccccccchhhcC-CchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHH
Confidence 54221 222221111 010 011111222222222221 111222222222233332221111 11111111
Q ss_pred --------HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH-HccCCHHHHHHHHHHHHh
Q 011362 337 --------ILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL-CNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 337 --------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~ 407 (487)
..+...+...|..+- ..+..|...|.........+...+........ ...++.+.++.+|+....
T Consensus 417 ~~~~~~rr~~~~~~~s~~~s~lr------~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imt 490 (881)
T KOG0128|consen 417 NDYLAYRRRCTNIIDSQDYSSLR------AAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMT 490 (881)
T ss_pred HHHHHHHHhhcccchhhhHHHHH------HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhcccc
Confidence 111111111121111 12444555555444321223333333333333 347889999999999887
Q ss_pred CCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC
Q 011362 408 NAVVPNVI-TFDMLIRGFIRINEPSKVIELLHKMKEINVMPD 448 (487)
Q Consensus 408 ~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 448 (487)
.|.. +.. .|...+..-...|+...+..+++.+...-..|+
T Consensus 491 y~~~-~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~ 531 (881)
T KOG0128|consen 491 YGGG-SIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPE 531 (881)
T ss_pred CCcc-hHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCch
Confidence 6433 333 555556655677888888888888876555554
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=85.28 E-value=2.5 Score=24.19 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcC
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFG 53 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 53 (487)
.+..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 36788899999999999999888643
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.20 E-value=0.37 Score=36.69 Aligned_cols=83 Identities=16% Similarity=0.091 Sum_probs=43.4
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCC
Q 011362 315 FIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ 394 (487)
Q Consensus 315 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (487)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~-------yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN-------YDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS-------S-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc-------cCHHHHHHHHHhcch
Confidence 3444555566666666666666554445566666666666666655666665552221 111234444455555
Q ss_pred HHHHHHHHHH
Q 011362 395 MDKARDLFLD 404 (487)
Q Consensus 395 ~~~A~~~~~~ 404 (487)
+++|.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=85.09 E-value=42 Score=33.25 Aligned_cols=376 Identities=12% Similarity=0.029 Sum_probs=170.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 32 GLCAESRIMEAAALFTKLRVFGCEPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 32 ~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
...+.|++..+.++...+... +.. -..|..+... .....+++...++++-.. .|.....-...+..+.
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~--pL~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~~~--------~P~~~~Lr~~~l~~La 110 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDY--PLYPYLEYRQLTQD-LMNQPAVQVTNFIRANPT--------LPPARSLQSRFVNELA 110 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCC--CcHhHHHHHHHHhc-cccCCHHHHHHHHHHCCC--------CchHHHHHHHHHHHHH
Confidence 345777787777776665422 111 1112222211 122245554444444332 1233333444555666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHH--
Q 011362 111 KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA-- 188 (487)
Q Consensus 111 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-- 188 (487)
+.+++......+. . .+.+...-...+.+....|+.++|......+-..|.. .+..+..++..+.+.|.....
T Consensus 111 ~~~~w~~~~~~~~----~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d~ 184 (644)
T PRK11619 111 RREDWRGLLAFSP----E-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLAY 184 (644)
T ss_pred HccCHHHHHHhcC----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHHH
Confidence 6777776665321 1 2345555666777777888877777777776555433 455566777777665554332
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHc------------CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH--HccCC
Q 011362 189 SRLLDLMIQHGVRPDAFTYNTLLDGFCL------------TGRVNHAKELFVSMESMGCKHTVFSYSILINGY--CKNKE 254 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~ 254 (487)
.+-++.+...| +......+...... ..+...+...+. ..+++...-..++.++ ....+
T Consensus 185 w~R~~~al~~~---~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~-----~~~~~~~~~~~~~~~l~Rlar~d 256 (644)
T PRK11619 185 LERIRLAMKAG---NTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFAR-----TTGPTDFTRQMAAVAFASVARQD 256 (644)
T ss_pred HHHHHHHHHCC---CHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhh-----ccCCChhhHHHHHHHHHHHHHhC
Confidence 22222222222 11111111111100 001111111110 0112221111111111 23445
Q ss_pred HhHHHHHHHHHHHCC-CccCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHH
Q 011362 255 IEGALSLYSEMLSKG-IKPDV--VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVEL 331 (487)
Q Consensus 255 ~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 331 (487)
.+.|..++....... ..+.. .+...+.......+...++...+...... ..+......-+..-...++++.+...
T Consensus 257 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~~~~ 334 (644)
T PRK11619 257 AENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGLNTW 334 (644)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHHHHH
Confidence 577777777654332 21111 12222222222222234444444443322 12333333334444466677666666
Q ss_pred HHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC------------CCC--------CcH-H-----HHHHH
Q 011362 332 FHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG------------VLV--------PNV-V-----TYSIM 385 (487)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------~~~--------~~~-~-----~~~~l 385 (487)
+..|.... .....-.--+..++...|+.++|...|+.+... |.+ |.. . .--.-
T Consensus 335 i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~r 413 (644)
T PRK11619 335 LARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKAPKPDSALTQGPEMAR 413 (644)
T ss_pred HHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCCCchhhhhccChHHHH
Confidence 66654322 222333334455555567777777766665321 100 000 0 00112
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 011362 386 IGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLH 438 (487)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 438 (487)
+..+...|+...|...+..+... .+......+.......|.++.+.....
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~ 463 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATI 463 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 34456678888888888877764 244444555555556676666655443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=84.61 E-value=30 Score=31.15 Aligned_cols=66 Identities=12% Similarity=0.028 Sum_probs=46.4
Q ss_pred CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011362 237 HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP---DVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
....++..++..+.+.|.++.|...+..+...+... .+......+...-..|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567778888888888888888888877643221 334445556666777888888888877766
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=84.26 E-value=2 Score=22.27 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=11.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHh
Q 011362 385 MIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 385 l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
+..++.+.|++++|...|+++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34444444555555555554443
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=83.88 E-value=9 Score=36.07 Aligned_cols=101 Identities=16% Similarity=0.143 Sum_probs=77.3
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|+...|.+.+..+....+...-+..-.|.+...+.|-..+|-.++.+.+... ...+-++..+.+++....+.+.|++.|
T Consensus 621 gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 621 GNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred CCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 6777788888888776544344456667888889999999999999888765 455667888999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
+.+.+.. +.+...-+.|...-|
T Consensus 700 ~~a~~~~-------~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 700 RQALKLT-------TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHhcC-------CCChhhHHHHHHHHH
Confidence 9998876 555666665554433
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.05 E-value=0.76 Score=34.95 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=46.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++.. +......++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence 34455556666677777777765544445666677777777776666666665511 11223345555555555
Q ss_pred hHHHHHHHHH
Q 011362 185 MDEASRLLDL 194 (487)
Q Consensus 185 ~~~a~~~~~~ 194 (487)
++++.-++.+
T Consensus 86 ~~~a~~Ly~~ 95 (143)
T PF00637_consen 86 YEEAVYLYSK 95 (143)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHHH
Confidence 5555555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.82 E-value=94 Score=35.49 Aligned_cols=318 Identities=13% Similarity=0.063 Sum_probs=165.5
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.+..+-.+.+.+.+|...+++-.....+ .......+..+...|...+++|....+...-.. +...+. -+.
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~----~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil 1457 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKE----KETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QIL 1457 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccch----hHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHH
Confidence 4455666888999999999984221100 012234455555599999999998888764211 223333 344
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHcCCCHh
Q 011362 143 GFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTL-LDGFCLTGRVN 221 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~ 221 (487)
.....|+|..|...|+.+.+.+.+ ...+++.++......|.+....-..+-.... ..+....++.+ ..+-=+.++++
T Consensus 1458 ~~e~~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD 1535 (2382)
T KOG0890|consen 1458 EHEASGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWD 1535 (2382)
T ss_pred HHHhhccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchh
Confidence 456789999999999999886422 4667888888777888888877766655443 22222333322 23334666777
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHH--HHHHHHc--cCCHhHHHHHHHHHHHCCCcc--------C-hhhHHHHHHHHHhcC
Q 011362 222 HAKELFVSMESMGCKHTVFSYSI--LINGYCK--NKEIEGALSLYSEMLSKGIKP--------D-VVIHNTLFVGLFEIH 288 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~--~~~~~~a~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~ 288 (487)
.....+. +. +...|.. ++....+ ..|.-.-.+.++.+.+.-+.| + ...|..++..+.-.
T Consensus 1536 ~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~- 1607 (2382)
T KOG0890|consen 1536 LLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL- 1607 (2382)
T ss_pred hhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-
Confidence 6666554 11 1222222 2222222 222211112333322211110 0 01222222221111
Q ss_pred CHHHHHHHHHHHHHcCCCCcH------HhHHHHHHHHHhCCCHhHHHHHHHHH-HHcCC-----CCChHhHHHHHHHHHh
Q 011362 289 QVERAFKLFDEMQRNGVAADT------WTYRTFIDGLCKNGYIVEAVELFHTL-RILKC-----EFDIRAYNSLIDGLCK 356 (487)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~~~~l~~~~~~ 356 (487)
+.....+.... ..++. .-|..-+..-....+..+-+-.+++. ..... .--..+|....+....
T Consensus 1608 ---el~~~~~~l~~--~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1608 ---ELENSIEELKK--VSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred ---HHHHHHHHhhc--cCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh
Confidence 11111111111 11111 11111221111111122222222221 11111 2235678888888888
Q ss_pred cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 357 SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
.|.++.|...+-.+.+.+ .| ..+--.+......|+-..|+.++++..+.
T Consensus 1683 aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred cccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999998887777664 33 34445667788999999999999998854
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=82.62 E-value=41 Score=31.14 Aligned_cols=127 Identities=9% Similarity=-0.054 Sum_probs=83.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
|.-....|+...|-+-+...++.. +.++.........+...|.++.+.+.+....+.- .....+...+++..
T Consensus 296 i~k~~~~gd~~aas~~~~~~lr~~-~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~-------~s~~~~~~~~~r~~ 367 (831)
T PRK15180 296 ITKQLADGDIIAASQQLFAALRNQ-QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKII-------GTTDSTLRCRLRSL 367 (831)
T ss_pred HHHHhhccCHHHHHHHHHHHHHhC-CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhh-------cCCchHHHHHHHhh
Confidence 344456778777755444444332 3333333334455667899999988887665542 44567778888888
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGV 165 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 165 (487)
...|+++.|...-+-|....+. +++.........-..|-++++.-.|+++...+.
T Consensus 368 ~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 368 HGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 8899999999998888876554 444444444444456778888888888776543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=82.12 E-value=8.7 Score=23.09 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=17.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 011362 420 LIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIV 455 (487)
Q Consensus 420 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (487)
+.-++.+.|++++|.+..+.+++ +.|+..-...+
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~L 40 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQSL 40 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHHH
Confidence 34455666666666666666665 34554444433
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=82.02 E-value=29 Score=29.54 Aligned_cols=87 Identities=14% Similarity=0.047 Sum_probs=49.8
Q ss_pred HHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH-----
Q 011362 246 INGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC----- 320 (487)
Q Consensus 246 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----- 320 (487)
|.++...++|.+++...-+.-..--+..+.+....|-.|.+.+.+..+.++-.......-.-+..-|..+++.|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 566677777777776665554432222233445555567777777777777666655322222233555555443
Q ss_pred hCCCHhHHHHHH
Q 011362 321 KNGYIVEAVELF 332 (487)
Q Consensus 321 ~~~~~~~a~~~~ 332 (487)
-.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 357777777666
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=81.56 E-value=55 Score=31.99 Aligned_cols=26 Identities=12% Similarity=0.091 Sum_probs=18.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKL 49 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~ 49 (487)
+..|+ .+..+.-+|.+++|.+++...
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~~ 174 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRLH 174 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-TT
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHhc
Confidence 56677 577788889999999988443
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=81.07 E-value=6.5 Score=25.85 Aligned_cols=47 Identities=9% Similarity=0.140 Sum_probs=31.5
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHH
Q 011362 391 NDGQMDKARDLFLDMEENAVVPN--VITFDMLIRGFIRINEPSKVIELL 437 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~ 437 (487)
...+.++|+..|...++.-..+. ..++..++.+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677788888888776533322 245667777788888887766653
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=80.98 E-value=62 Score=32.16 Aligned_cols=76 Identities=11% Similarity=-0.079 Sum_probs=47.0
Q ss_pred HHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 63 TLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 63 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.....+.+.+++...+.++.. .|.+...-..+..+....|+.++|......+-..|. ..+.....++.
T Consensus 104 ~~l~~La~~~~w~~~~~~~~~-----------~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~-~~p~~cd~l~~ 171 (644)
T PRK11619 104 RFVNELARREDWRGLLAFSPE-----------KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGK-SLPNACDKLFS 171 (644)
T ss_pred HHHHHHHHccCHHHHHHhcCC-----------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CCChHHHHHHH
Confidence 344455666777666652211 245566667777888888888777777776655543 24556666777
Q ss_pred HHHhcCCh
Q 011362 143 GFCYAKDW 150 (487)
Q Consensus 143 ~~~~~~~~ 150 (487)
.+.+.|..
T Consensus 172 ~~~~~g~l 179 (644)
T PRK11619 172 VWQQSGKQ 179 (644)
T ss_pred HHHHcCCC
Confidence 66655543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=80.04 E-value=4.1 Score=20.26 Aligned_cols=28 Identities=14% Similarity=0.048 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVF 52 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 52 (487)
+|..+...+...|++++|...|+..++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4666777788888888888888777654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 91.0 bits (224), Expect = 2e-19
Identities = 25/220 (11%), Positives = 69/220 (31%), Gaps = 4/220 (1%)
Query: 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79
+P L++ + + A + T +A +
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139
L + Y ++ G ++G + +L +KD + P++++Y +
Sbjct: 149 LLVVHHGQRQK---RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205
Query: 140 VIRGFCYA-KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH 198
++ +D +R +M +G++ + V++ E + + ++
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
Query: 199 GVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT 238
P + LL +L + ++++ C
Sbjct: 266 PQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 90.6 bits (223), Expect = 3e-19
Identities = 26/230 (11%), Positives = 62/230 (26%), Gaps = 4/230 (1%)
Query: 118 AKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 177
A L + P +++ + + + +
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 178 ELCKNGKMDEASRLLDL---MIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234
++ A LL + Q YN ++ G+ G + ++ G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 235 CKHTVFSYSILINGYCKNKEIEGALSLY-SEMLSKGIKPDVVIHNTLFVGLFEIHQVERA 293
+ SY+ + + + G + +M +G+K + L ++
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 294 FKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFD 343
K+ + + V +L L+ L+C F+
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 77.2 bits (188), Expect = 4e-15
Identities = 17/169 (10%), Positives = 49/169 (28%), Gaps = 4/169 (2%)
Query: 289 QVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLR---ILKCEFDIR 345
++ + + ++ F + A L + +
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 346 AYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKA-RDLFLD 404
YN+++ G + G + + + + L P++++Y+ + + Q
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 405 MEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVS 453
M + + + +L+ R V ++ +P S
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.7 bits (179), Expect = 6e-14
Identities = 20/230 (8%), Positives = 59/230 (25%), Gaps = 4/230 (1%)
Query: 223 AKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV 282
A L + L+ ++ + + + F
Sbjct: 76 AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135
Query: 283 GLFEIHQVERAFKLFD---EMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK 339
Q+ A L ++ Y + G + G E V + ++
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195
Query: 340 CEFDIRAYNSLIDGLCKSGR-LEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKA 398
D+ +Y + + + + + + L + ++++ +
Sbjct: 196 LTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255
Query: 399 RDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPD 448
+ +P + L+R + +L +K + + +
Sbjct: 256 HKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 61.4 bits (147), Expect = 4e-10
Identities = 16/169 (9%), Positives = 46/169 (27%), Gaps = 7/169 (4%)
Query: 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFT 60
+ H VV + + +++ G + E + ++ G PD+ +
Sbjct: 143 LPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202
Query: 61 YTTLVNGLCRTSHTI-VALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAK 119
Y + + R E+M+ + + ++ + +
Sbjct: 203 YAAALQCMGRQDQDAGTIERCLEQMSQEG------LKLQALFTAVLLSEEDRATVLKAVH 256
Query: 120 ELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN 168
++ P V + ++R +L + +
Sbjct: 257 KVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFE 305
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 50.2 bits (118), Expect = 1e-06
Identities = 9/90 (10%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
Query: 377 PNVVTYSIMIGGLCNDGQMDKARDLFL---DMEENAVVPNVITFDMLIRGFIRINEPSKV 433
Q+ A L + + + + ++ ++ G+ R ++
Sbjct: 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL 184
Query: 434 IELLHKMKEINVMPDASIVSIVVDLLAKNE 463
+ +L +K+ + PD + + + + +
Sbjct: 185 VYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 7e-10
Identities = 75/565 (13%), Positives = 168/565 (29%), Gaps = 179/565 (31%)
Query: 3 RVSHGFVVLGRILKSCFTPDAVT--FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFT 60
R+++ F++ I P +T + L ++++ F K V +P
Sbjct: 88 RINYKFLM-SPIKTEQRQPSMMTRMYIEQRDRLYNDNQV------FAKYNVSRLQP---- 136
Query: 61 YTTLVNGLCR-TSHTIVALNLFEEMANGNG----------EFGVVCE-PNTVTYTTIIDG 108
Y L L V + + + G+G + V C+ + + +
Sbjct: 137 YLKLRQALLELRPAKNVLI---DGVL-GSGKTWVALDVCLSYKVQCKMDFKIFWLNL--K 190
Query: 109 LCK--EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ 166
C E ++ ++LL Q+ D N +++ + E +RL
Sbjct: 191 NCNSPETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKP----Y 243
Query: 167 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC---LTGR---- 219
N + +++ + ++ + AF + C LT R
Sbjct: 244 ENCL---LVLLNVQN-------AKAWN----------AF------NLSCKILLTTRFKQV 277
Query: 220 -----VNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDV 274
+ + SM + E++ L Y + + + +V
Sbjct: 278 TDFLSAATTTHISLDHHSMT-----LT----------PDEVKSLLLKYLDCRPQDLPREV 322
Query: 275 VIHNTLFVGLF-----------------EIHQVERAFKLF------DEMQRN-------- 303
+ N + + ++ + E ++
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 304 -------GVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAY--NSLIDGL 354
+ + W D ++ V H +++ + S+ L
Sbjct: 383 PSAHIPTILLSLIWFDVIKSD-------VMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
Query: 355 CKSGRLEIAL--------ELFRSLPCGVLVPNVVT---YSIMIG----GLCNDGQMDKAR 399
E AL + ++ L+P + YS IG + + +M R
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS-HIGHHLKNIEHPERMTLFR 494
Query: 400 DLFLDM---------EENAVVPNVITFDMLI-----RGFIRINEP------SKVIELLHK 439
+FLD + A + + L + +I N+P + +++ L K
Sbjct: 495 MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 440 MKEINVM-PDASIVSIVVDLLAKNE 463
++E + ++ I L+A++E
Sbjct: 555 IEENLICSKYTDLLRIA--LMAEDE 577
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.9 bits (144), Expect = 1e-09
Identities = 77/485 (15%), Positives = 145/485 (29%), Gaps = 145/485 (29%)
Query: 81 FE--EMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNI--KPNVVT 136
FE E + V E V + CK+ D K +L + + +I + V+
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVD-----NFDCKD-VQDMPKSILSKEEIDHIIMSKDAVS 62
Query: 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL---CKNGKM------DE 187
T + +K ++ F+E + ++ N + +M + + M ++
Sbjct: 63 GTLRLFWTLLSKQEEMVQK-FVE---EVLRIN---YKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 188 ASRLL---DLMIQHGV-RPDAFTYNTLLDGFCLTGRVNHAKEL----FVSMESM-GC-K- 236
RL + ++ V R Y L R EL V ++ + G K
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQ--PYLKL--------R-QALLELRPAKNVLIDGVLGSGKT 164
Query: 237 ------------HTVFSYSIL-IN-GYCKNKE--IEGALSLYSEM---------LSKGIK 271
+ I +N C + E +E L ++ S IK
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 272 PDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK------NGYI 325
+ L + E + +Q + + F + CK +
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQ------NAKAWNAF-NLSCKILLTTRFKQV 277
Query: 326 VEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFR--------SLP---CGV 374
+ + T I + + L E L LP
Sbjct: 278 TDFLSAATTTHI--------SLDHHSMTLTPD---E-VKSLLLKYLDCRPQDLPREVLTT 325
Query: 375 LVPNVVTYSIMIGGLCNDG-------------QMDKARDLFLDMEEN----------AVV 411
P ++ +I DG ++ + L++ E +V
Sbjct: 326 N-PRRLS---IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381
Query: 412 P-NV-ITFDMLIR--GFIRINEPSKVIELLHKMKEINVMPDASIVSI---VVDLLAK--N 462
P + I +L + ++ V+ LHK + P S +SI ++L K N
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 463 EISLN 467
E +L+
Sbjct: 442 EYALH 446
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 3e-06
Identities = 52/301 (17%), Positives = 100/301 (33%), Gaps = 58/301 (19%)
Query: 220 VNHAKELFVSMESMGCKHTV-FSYSILINGYCKN-----KEIEGALSLYSEMLSKGIKPD 273
++ ++ FV ++ CK SIL + + G L L+ +LSK +
Sbjct: 22 LSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ--EE 77
Query: 274 VVIHNTLFVGLFEIHQVERAFKLFDEMQR--NGVAADTWTYRTFIDGLCKNG-----YIV 326
+V FV E+ ++ F L ++ + T Y D L + Y V
Sbjct: 78 MV---QKFVE--EVLRINYKF-LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 327 EAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMI 386
++ + LR E A N LIDG+ SG+ +AL++ S + + + + +
Sbjct: 132 SRLQPYLKLRQALLELR-PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNL 189
Query: 387 GGLCN--DGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKE-- 442
CN + ++ + L ++ N + D +RI+ + L K K
Sbjct: 190 K-NCNSPETVLEMLQKLLYQIDPNWTSRS----DHSSNIKLRIHSIQAELRRLLKSKPYE 244
Query: 443 --------------INVM----------PDASIVSIVVDLLAKNEISLNSLPSFTVHEQQ 478
N + + + + + T E +
Sbjct: 245 NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 479 E 479
Sbjct: 305 S 305
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 5e-05
Identities = 32/275 (11%), Positives = 78/275 (28%), Gaps = 65/275 (23%)
Query: 221 NHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTL 280
+H + K + S+ + + N + + + +LSK +++
Sbjct: 4 HHHMDFETGEHQYQYKDIL---SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM---- 56
Query: 281 FVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGY--IVEAVELFHTLRIL 338
V +LF + + F++ + + Y ++ T
Sbjct: 57 -----SKDAVSGTLRLFWTLLSKQ----EEMVQKFVEEVLRINYKFLMSP---IKT-EQR 103
Query: 339 KCEFDIRAYNSLIDGLCKSG---------RLEIALELFRSL----PCGVLVPNVVTY--- 382
+ R Y D L RL+ L+L ++L P NV+
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP----AKNVLIDGVL 159
Query: 383 ----SIMIGGLCND----------------GQMDKARDLFLDMEENAVVPNVITFDMLIR 422
+ + +C + + L+M + + I + R
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQK--LLYQIDPNWTSR 216
Query: 423 GFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457
N ++ + +++ + +V+
Sbjct: 217 SDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 22/160 (13%), Positives = 45/160 (28%), Gaps = 10/160 (6%)
Query: 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIHNTLFVGLFEIHQVERAFKLFDE- 299
+ G + ++ L + + + G+ P VV + G + V+R + +
Sbjct: 75 IASHDGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQA 132
Query: 300 MQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGR 359
G + + + L E + A S G
Sbjct: 133 HGLTPEQVVAIASH--DGGKQALETVQALLPVLCQAHGLTPE-QVVAIASNGGGKQALET 189
Query: 360 LEIALELFRSLPCGVLVPN-VVTYSIMIGGLCNDGQMDKA 398
++ L + L P VV + GG + +
Sbjct: 190 VQRLLPVLCQAHG--LTPQQVVAIASNGGGKQALETVQRL 227
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 32/226 (14%), Positives = 65/226 (28%), Gaps = 19/226 (8%)
Query: 183 GKMDEASRLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT-VF 240
+ L L HG+ PD + G V + ++ G V
Sbjct: 274 ETVQRL--LPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLC--QAHGLTPDQVV 329
Query: 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPD-VVIHNTLFVGLFEIHQVERAFKLFDE 299
+ + G + ++ L + + G+ PD VV + G + V+R + +
Sbjct: 330 AIASHDGGKQALETVQRLLPVLCQAH--GLTPDQVVAIASNGGGKQALETVQRLLPVLCQ 387
Query: 300 -MQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG 358
L + + + L + + A S G
Sbjct: 388 AHGLTPDQVVAIASNGGKQAL---ETVQRLLPVLCQAHGLTPD-QVVAIASHDGGKQALE 443
Query: 359 RLEIALELF-RSLPCGVLVP-NVVTYSIMIGGLCNDGQMDKARDLF 402
++ L + ++ L P VV + GG + + +
Sbjct: 444 TVQRLLPVLCQTH---GLTPAQVVAIASHDGGKQALETVQQLLPVL 486
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 37/264 (14%), Positives = 78/264 (29%), Gaps = 39/264 (14%)
Query: 126 KDKNIKPN-VVTYTSVIRGFCYAK--DWNEAKRLF---IEMMDQGVQPNVVTFNVIMDEL 179
+D+ +K ++ G D A IE + P V ++ + +
Sbjct: 228 EDEKLKEKLAISLEH--TGIFKFLKNDPLGAHEDIKKAIE-----LFPRVNSYIYMALIM 280
Query: 180 CKNGKMDEASRLLDLMIQHGVRPD-AFTYNTLLDGFCL--TGRVNHAKELF---VSMESM 233
E D ++ + + Y G + A + F ++
Sbjct: 281 ADRNDSTEYYNYFDKALKLD--SNNSSVYYHR--GQMNFILQNYDQAGKDFDKAKELDP- 335
Query: 234 GCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IHNTLFVGLFEIHQVER 292
+F Y L + + + +L+SE P+ + N L + + ++
Sbjct: 336 ---ENIFPYIQLACLAYRENKFDDCETLFSEAKR--KFPEAPEVPNFFAEILTDKNDFDK 390
Query: 293 AFKLFDEM-QRNGVAADTWTYR-------TFIDGLCKNGYIVEAVELFHTLRILKCEFDI 344
A K +D + + T + +EA L L +
Sbjct: 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE- 449
Query: 345 RAYNSLIDGLCKSGRLEIALELFR 368
+A L + ++ A+ LF
Sbjct: 450 QAKIGLAQMKLQQEDIDEAITLFE 473
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.96 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.96 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.93 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.92 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.91 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.91 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.89 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.89 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.88 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.86 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.85 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.85 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.83 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.8 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.8 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.77 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.76 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.75 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.75 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.75 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.74 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.74 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.73 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.72 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.72 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.72 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.72 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.71 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.69 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.68 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.66 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.65 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.65 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.64 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.62 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.61 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.6 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.6 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.59 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.58 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.58 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.52 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.52 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.5 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.5 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.5 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.47 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.46 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.43 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.38 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.36 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.35 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.32 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.32 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.3 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.29 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.29 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.29 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.29 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.29 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.29 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.28 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.27 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.26 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.24 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.23 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.22 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.21 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.21 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.2 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.2 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.2 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.19 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.17 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.15 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.11 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.1 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.09 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.04 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.02 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.02 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.01 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.98 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.97 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.97 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.97 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.96 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.95 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.95 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.94 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.94 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.93 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.92 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.92 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.91 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.9 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.89 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.89 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.88 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.86 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.86 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.86 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.85 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.84 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.83 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.81 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.8 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.8 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.78 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.76 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.75 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.72 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.71 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.7 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.7 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.69 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.68 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.68 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.67 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.67 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.65 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.65 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.64 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.63 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.62 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.6 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.58 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.56 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.55 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.55 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.55 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.54 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.54 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.53 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.49 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.48 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.45 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.42 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.39 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.38 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.37 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.36 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.34 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.34 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.33 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.33 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.32 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.29 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.29 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.28 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.28 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.28 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.24 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.24 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.23 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.22 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.13 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.13 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.03 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.0 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.97 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.93 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.69 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.61 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.6 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.51 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.4 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.36 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.31 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.28 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.27 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.23 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.21 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.21 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.16 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.1 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.1 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.78 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.78 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.77 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.62 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.55 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.52 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.39 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.3 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.29 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.08 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.08 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 95.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.75 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.49 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.13 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.03 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.43 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.25 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 94.19 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.9 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.7 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.51 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 93.33 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.0 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 92.89 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 92.56 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 92.22 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.75 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 91.16 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.65 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 90.61 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 89.12 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.85 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 88.13 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.93 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.33 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 87.06 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 86.92 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.52 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 86.44 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 83.23 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.06 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 82.91 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 82.68 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 81.42 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-41 Score=326.29 Aligned_cols=436 Identities=11% Similarity=0.037 Sum_probs=375.3
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+++..|+.++..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|+.+|+++.. .+++..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~ 151 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--------YNRSSA 151 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--------GGTCHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--------cccchh
Confidence 57888999999999999999999999999865 57778889999999999999999999998865 367889
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDK---------------NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGV 165 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 165 (487)
+++.++.+|.+.|++++|.++|+++... +.+++..+|+.++.+|.+.|++++|.+.|+++.+.++
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999853222 2234578999999999999999999999999988643
Q ss_pred CCChhhHHHH--------------------------------------HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 011362 166 QPNVVTFNVI--------------------------------------MDELCKNGKMDEASRLLDLMIQHGVRPDAFTY 207 (487)
Q Consensus 166 ~~~~~~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 207 (487)
. +...+..+ +..|.+.|++++|.++|+.+.+. +++..++
T Consensus 232 ~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 308 (597)
T 2xpi_A 232 K-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLL 308 (597)
T ss_dssp T-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHH
T ss_pred h-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHH
Confidence 2 33333322 34455778899999999988765 5789999
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc
Q 011362 208 NTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI 287 (487)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (487)
..++..+.+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.... +.+..++..++..|.+.
T Consensus 309 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 309 LCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHh
Confidence 999999999999999999999998876 5578889999999999999999999999998653 34778899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 011362 288 HQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELF 367 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 367 (487)
|++++|..+|+++.+.. +.+..++..++..|.+.|++++|..+|+++.... +.+..++..++.+|.+.|++++|.++|
T Consensus 387 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998753 4567889999999999999999999999998775 668889999999999999999999999
Q ss_pred HhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 368 RSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN----AVVPN--VITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
+++.+.. +.+..+|+.++.+|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9998753 557889999999999999999999999999875 55777 7899999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHHhcccccccccccccc
Q 011362 442 EINVMPDASIVSIVVDLLAKNEISLNSLPSFTVH 475 (487)
Q Consensus 442 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~ 475 (487)
+.+ +.+..++..++.+|.+.|+++++++.+...
T Consensus 544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 876 557899999999999999997777766543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-40 Score=321.15 Aligned_cols=446 Identities=12% Similarity=0.012 Sum_probs=383.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+.+|++++.. .|+..++..++.+|.+.|++++|+.+|+++... +++..+++.++.+|.+.|++++|+++
T Consensus 97 ~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~ 172 (597)
T 2xpi_A 97 QQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNL 172 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHH
Confidence 48899999999999975 467788999999999999999999999998754 68889999999999999999999999
Q ss_pred HHHHHhCCC---------CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH-----------
Q 011362 81 FEEMANGNG---------EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV----------- 140 (487)
Q Consensus 81 ~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----------- 140 (487)
|+++..... ......+.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+...+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~ 251 (597)
T 2xpi_A 173 LGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEAFDQLVSNHLLTADEE 251 (597)
T ss_dssp HCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCSCHHHH
T ss_pred HhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHHHHHHHHhhcccchhH
Confidence 995322210 00001245689999999999999999999999999988642 234444333
Q ss_pred ---------------------------HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 011362 141 ---------------------------IRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 193 (487)
Q Consensus 141 ---------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 193 (487)
+..|.+.|++++|.++|+++.+. +++..+++.++..|.+.|++++|..+|+
T Consensus 252 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (597)
T 2xpi_A 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITT 329 (597)
T ss_dssp HHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 44556788999999999998775 5789999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC
Q 011362 194 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 273 (487)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 273 (487)
.+.+.+.. +..++..++.++...|++++|..+++.+.+.. +.+..++..++.+|.+.|++++|.++|+++.+... .+
T Consensus 330 ~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~ 406 (597)
T 2xpi_A 330 KILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QF 406 (597)
T ss_dssp HHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred HHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CC
Confidence 99987533 77889999999999999999999999998764 66788999999999999999999999999987533 36
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHH
Q 011362 274 VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDG 353 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 353 (487)
..++..++..+.+.|++++|..+|+++.+.+ +.+..++..++.+|.+.|++++|..+|+++.+.. +.++.+|+.++..
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV 484 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence 7799999999999999999999999998874 4577899999999999999999999999999875 6688999999999
Q ss_pred HHhcCCHHHHHHHHHhccCC----CCCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 011362 354 LCKSGRLEIALELFRSLPCG----VLVPN--VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRI 427 (487)
Q Consensus 354 ~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (487)
|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|...++++.+.+ +.+..+|..++.+|...
T Consensus 485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 563 (597)
T 2xpi_A 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHK 563 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHT
T ss_pred HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHh
Confidence 99999999999999998764 44676 7899999999999999999999999998864 34789999999999999
Q ss_pred CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 428 NEPSKVIELLHKMKEINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 428 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (487)
|++++|.+.++++.+.. +.+...+..+..+|.
T Consensus 564 g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 564 KIPGLAITHLHESLAIS-PNEIMASDLLKRALE 595 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence 99999999999999865 445666666665543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-31 Score=241.56 Aligned_cols=383 Identities=14% Similarity=0.081 Sum_probs=288.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
+...+.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. |.+...|..++.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-------p~~~~~~~~lg~~ 76 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCchHHHHHHHHH
Confidence 4566778889999999888887764 4556677777888888899999998888888765 6678888888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 188 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 188 (487)
+.+.|++++|.+.|+++.+.. +.+..+|..++.++...|++++|.+.|+++.+..+. +...+..+...+...|++++|
T Consensus 77 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A 154 (388)
T 1w3b_A 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHH
Confidence 989999999999998887753 335667888888888889999999988888876432 445566777788888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 189 SRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
...|+.+.+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+.+....
T Consensus 155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 88888887763 2357788888888888888888888888888765 556677888888888888888888888887765
Q ss_pred CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHH
Q 011362 269 GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYN 348 (487)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 348 (487)
.+. +..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...++++.+.. +.+..++.
T Consensus 233 ~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~ 309 (388)
T 1w3b_A 233 SPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred CcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHH
Confidence 322 45667777777788888888888888777753 3345667777777777888888888887777664 56677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011362 349 SLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (487)
.+...+...|++++|...++++.+.. +.+..++..++.++.+.|++++|...|+++.+.. +.+...|..+...+...|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 77777777777888877777777652 4456677777777777777777777777777642 124555555555555444
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-31 Score=240.97 Aligned_cols=375 Identities=14% Similarity=0.021 Sum_probs=331.8
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|++.++.+++.. |.+...+..+...+...|++++|...++.+.+.. +.+..+|..++.++.+.|++++|+..|
T Consensus 13 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 89999999999999986 5578888889999999999999999999998875 667889999999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+++.+.. |.+...|..++.++...|++++|.+.|+++.+.+ +.+...+..+...+...|++++|.+.|+++.
T Consensus 91 ~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 91 RHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHcC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 9999865 5667889999999999999999999999998864 3356678889999999999999999999998
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
+..+. +..++..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...+++..... |.+..+
T Consensus 163 ~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 239 (388)
T 1w3b_A 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHH
Confidence 87433 577899999999999999999999999998743 367889999999999999999999999998875 557888
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK 321 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 321 (487)
+..+..++...|++++|...++++.+.++. +..++..+...+...|++++|...++++.+.. +.+..++..+...+..
T Consensus 240 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHH
Confidence 999999999999999999999999987543 56788999999999999999999999998874 5678899999999999
Q ss_pred CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC
Q 011362 322 NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (487)
.|++++|...++++.+.. +.+..++..++..+.+.|++++|...|+++.+.. +.+...|..+...+...|
T Consensus 318 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 999999999999998764 6678899999999999999999999999998763 445678888877776655
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=236.20 Aligned_cols=190 Identities=17% Similarity=0.277 Sum_probs=137.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCC---------HhHHHHHHHHHHHcCCCCChHh
Q 011362 276 IHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGY---------IVEAVELFHTLRILKCEFDIRA 346 (487)
Q Consensus 276 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~~ 346 (487)
.++.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|.+.+. +++|.++|++|...|+.||..+
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 3455556666666666666666666666666666666666666654433 5667777777777777777777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIR 426 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (487)
|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~ 187 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD 187 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 427 INEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
.|+.++|.+++++|.+.|..|+..++..++..|++.+..
T Consensus 188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~~a~ 226 (501)
T 4g26_A 188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVAT 226 (501)
T ss_dssp TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcCcch
Confidence 777777777777777777777777777777777665443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=232.18 Aligned_cols=210 Identities=16% Similarity=0.226 Sum_probs=157.1
Q ss_pred CccchH-HHHHHHHHhCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC------
Q 011362 2 GRVSHG-FVVLGRILKSCFTPDA-VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH------ 73 (487)
Q Consensus 2 g~~~~A-~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 73 (487)
|+...+ ..+.+.+.+.+..+.+ ..++.+|..|++.|++++|+++|++|.+.|+.||..+|+.++.+|++.+.
T Consensus 3 G~~~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~ 82 (501)
T 4g26_A 3 GHMASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSP 82 (501)
T ss_dssp ---------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSC
T ss_pred ccccchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhh
Confidence 444443 3444556666655443 45888999999999999999999999999999999999999999987665
Q ss_pred ---hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 74 ---TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 74 ---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
.++|.++|++|...+ +.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 83 ~~~l~~A~~lf~~M~~~G------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~ 156 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDK------VVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDA 156 (501)
T ss_dssp CHHHHHHHHHHHHHHHTT------CCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCH
Confidence 567778888887777 67788888888888888888888888888888878888888888888888888888
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 011362 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT 217 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (487)
++|.++|++|.+.|+.||..+|+.++.+|++.|+.++|.++|++|.+.|..|+..||+.++..|...
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888888888888888888777788888888777776653
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-27 Score=224.44 Aligned_cols=410 Identities=10% Similarity=-0.043 Sum_probs=305.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+......+.+.|++++|+..|+++.+.. |+..++..++.++...|++++|+..++++.+.+ |.+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-------PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------SCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-------hHHHHHH
Confidence 4456667777888888888888888887764 577777788888888888888888888877765 5566778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH----------------------
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM---------------------- 160 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------------- 160 (487)
..++.++...|++++|...|+++...+ +++......++..+........+.+.+..+
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 888888888888888888888877764 233333333333333322222222222111
Q ss_pred -------------HHcCC---------CCChhhHHHHHHHHHh---CCChHHHHHHHHHHHH-----CCC--------CC
Q 011362 161 -------------MDQGV---------QPNVVTFNVIMDELCK---NGKMDEASRLLDLMIQ-----HGV--------RP 202 (487)
Q Consensus 161 -------------~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~ 202 (487)
..... +.+...+......+.. .|++++|..+++.+.+ ... +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 00000 1113334444444444 8999999999999887 311 22
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV 282 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 282 (487)
+..++..+...+...|++++|...++.+.+... +...+..+..++...|++++|...++++...... +...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHH
Confidence 356778888899999999999999999988752 2788888999999999999999999999886433 5677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 011362 283 GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362 (487)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (487)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998864 3456788888899999999999999999998765 5567888899999999999999
Q ss_pred HHHHHHhccCCCC-CCc----HHHHHHHHHHHHc---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 011362 363 ALELFRSLPCGVL-VPN----VVTYSIMIGGLCN---DGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVI 434 (487)
Q Consensus 363 a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (487)
|...++++..... .++ ..++..++.++.. .|++++|...++++.+.. +.+..++..+..++...|++++|.
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 9999998875321 111 3378889999999 999999999999998763 336778888999999999999999
Q ss_pred HHHHHHHhcCCCCCHH
Q 011362 435 ELLHKMKEINVMPDAS 450 (487)
Q Consensus 435 ~~~~~~~~~~~~~~~~ 450 (487)
..++++.+.+ |+..
T Consensus 470 ~~~~~a~~~~--~~~~ 483 (514)
T 2gw1_A 470 TLFEESADLA--RTME 483 (514)
T ss_dssp HHHHHHHHHC--SSHH
T ss_pred HHHHHHHHhc--cccH
Confidence 9999999854 5543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.1e-27 Score=221.83 Aligned_cols=401 Identities=10% Similarity=-0.017 Sum_probs=318.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
...+...+..+.+.|++++|+..|+++.+.. |+...+..++.++...|++++|...++++.+.+ +.+..++
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 76 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--------EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHH
Confidence 4567788899999999999999999999854 689999999999999999999999999998874 4477899
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHH----------------------
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLM---------------------- 195 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------------------- 195 (487)
..++.++...|++++|...|+++...+. ++......++..+........+.+.+..+
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 9999999999999999999999998754 34444444444333322222222222111
Q ss_pred -------------HHCCC---------CCCHHHHHHHHHHHHc---CCCHhHHHHHHHHHHH-----cCC--------CC
Q 011362 196 -------------IQHGV---------RPDAFTYNTLLDGFCL---TGRVNHAKELFVSMES-----MGC--------KH 237 (487)
Q Consensus 196 -------------~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~ 237 (487)
..... +.+...+......+.. .|++++|...++++.. ... +.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 00000 1124444555555554 8999999999999987 311 23
Q ss_pred CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 011362 238 TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (487)
+...+..+...+...|++++|...++++....+. ...+..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 312 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHH
Confidence 4567888899999999999999999999886544 7788889999999999999999999998864 446678889999
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (487)
.+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.+.. +.+..++..++.++...|++++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999876 5577889999999999999999999999988653 4456788999999999999999
Q ss_pred HHHHHHHHHhCCCC-CC----HHHHHHHHHHHHh---cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccc
Q 011362 398 ARDLFLDMEENAVV-PN----VITFDMLIRGFIR---INEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSL 469 (487)
Q Consensus 398 A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 469 (487)
|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+...+..+..++.+.|++.+++
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 99999999764211 11 3378889999999 999999999999999865 456788889999999999997777
Q ss_pred ccccc
Q 011362 470 PSFTV 474 (487)
Q Consensus 470 ~~~~~ 474 (487)
+.+..
T Consensus 470 ~~~~~ 474 (514)
T 2gw1_A 470 TLFEE 474 (514)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-25 Score=207.37 Aligned_cols=329 Identities=12% Similarity=0.046 Sum_probs=191.3
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011362 6 HGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
.+...+..++... |.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|+..|+++.
T Consensus 10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 87 (450)
T 2y4t_A 10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVI 87 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445566666654 4567888888889999999999999999888764 5567788888888899999999999999888
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH---hhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV---VTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
+.+ |.+...+..++.+|...|++++|.+.|+++.+.. +.+. ..+..++..+...
T Consensus 88 ~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~--------------- 144 (450)
T 2y4t_A 88 QLK-------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ--------------- 144 (450)
T ss_dssp HHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH---------------
T ss_pred hcC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH---------------
Confidence 865 5667888888888999999999999998888763 2233 4555443331100
Q ss_pred cCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhH
Q 011362 163 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242 (487)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 242 (487)
.+..+...+...|++++|+.+|+.+.+.. +.+...+..++.++...|++++|...|+++.+.. +.+..++
T Consensus 145 --------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~ 214 (450)
T 2y4t_A 145 --------RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAF 214 (450)
T ss_dssp --------HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHH
T ss_pred --------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 11122223344444444444444444432 1234444444455555555555555555444432 3344445
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHN------------TLFVGLFEIHQVERAFKLFDEMQRNGVAAD-- 308 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-- 308 (487)
..++.+|...|++++|...++++....+. +...+. .+...+...|++++|...++++.+.. |+
T Consensus 215 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~ 291 (450)
T 2y4t_A 215 YKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIA 291 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Ccch
Confidence 55555555555555555555554432111 111221 12555666666666666666665532 22
Q ss_pred ---HHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 309 ---TWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 309 ---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
...+..++.++.+.|++++|...++.+.... +.+..++..++.+|...|++++|...++++.+.
T Consensus 292 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 292 EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 2345556666666666666666666666543 445566666666666666666666666666653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-25 Score=211.90 Aligned_cols=402 Identities=11% Similarity=0.043 Sum_probs=304.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...|..+...+.+.|++++|+..|+++.+.. +.+..++..++.++...|++++|++.|+++.+.+ |.+...+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~ 96 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-------PDHSKAL 96 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CchHHHH
Confidence 4567778888889999999999999988875 5677788888888999999999999999888876 5677888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC------CCCChh------
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG------VQPNVV------ 170 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~------ 170 (487)
..++.++...|++++|...|+.+ .. .|+. ....+..+...+...+|...++.+.... ..|+..
T Consensus 97 ~~la~~~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 171 (537)
T 3fp2_A 97 LRRASANESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFF 171 (537)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHH
Confidence 88888999999999999988643 22 1221 1222334444555567777777764421 111111
Q ss_pred ------------------------hHHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCC-------HHHHHHHH
Q 011362 171 ------------------------TFNVIMDELCK--------NGKMDEASRLLDLMIQHGVRPD-------AFTYNTLL 211 (487)
Q Consensus 171 ------------------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~ 211 (487)
....+...+.. .|++++|..+++.+.+.... + ..++..+.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g 250 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG 250 (537)
T ss_dssp HTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence 11222222221 24788999999998876332 2 23566777
Q ss_pred HHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHH
Q 011362 212 DGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVE 291 (487)
Q Consensus 212 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 291 (487)
..+...|++++|...++.+.+.. |+...+..+...+...|++++|...++++....+. +..++..+...+...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHH
Confidence 88889999999999999998874 45788899999999999999999999999886433 6778889999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 292 RAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 292 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
+|...++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+...|++++|...++++.
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 9999999998864 3456788889999999999999999999998875 6677889999999999999999999999876
Q ss_pred CCC-----CCCcHHHHHHHHHHHHcc----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 011362 372 CGV-----LVPNVVTYSIMIGGLCND----------GQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 372 ~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
+.. .......+.....++... |++++|...|+++.+.. +.+...+..+..+|...|++++|.+.
T Consensus 406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 532 111222344556677777 99999999999998864 33678889999999999999999999
Q ss_pred HHHHHhcC
Q 011362 437 LHKMKEIN 444 (487)
Q Consensus 437 ~~~~~~~~ 444 (487)
++++.+..
T Consensus 485 ~~~al~~~ 492 (537)
T 3fp2_A 485 FEDSAILA 492 (537)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99999865
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-24 Score=200.38 Aligned_cols=371 Identities=11% Similarity=0.038 Sum_probs=290.6
Q ss_pred HHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHH
Q 011362 77 ALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRL 156 (487)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 156 (487)
+...+..+.... |.+...+..++..+.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|+..
T Consensus 11 ~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 82 (450)
T 2y4t_A 11 VDLGTENLYFQS-------MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPD 82 (450)
T ss_dssp -------------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cccccccccccc-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344444444443 6778899999999999999999999999998763 45788999999999999999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHH------------HHHHHcCCCHh
Q 011362 157 FIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDA---FTYNTL------------LDGFCLTGRVN 221 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~ 221 (487)
|+++.+.++. +...+..+..+|...|++++|...|+.+.+.... +. ..+..+ ...+...|+++
T Consensus 83 ~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 83 LTKVIQLKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 9999987533 6778889999999999999999999999886322 33 455444 44588999999
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 222 HAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQ 301 (487)
Q Consensus 222 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (487)
+|...++.+.+.. +.+...+..++.+|.+.|++++|...++++..... .+..++..+...+...|++++|...++++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999998875 66788899999999999999999999999987533 367889999999999999999999999998
Q ss_pred HcCCCCcHHhHHHH------------HHHHHhCCCHhHHHHHHHHHHHcCCCCC----hHhHHHHHHHHHhcCCHHHHHH
Q 011362 302 RNGVAADTWTYRTF------------IDGLCKNGYIVEAVELFHTLRILKCEFD----IRAYNSLIDGLCKSGRLEIALE 365 (487)
Q Consensus 302 ~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~ 365 (487)
+.. +.+...+..+ +..+...|++++|...|+.+.... +.+ ..++..++.++.+.|++++|..
T Consensus 239 ~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 763 3344444444 788999999999999999998764 223 3478889999999999999999
Q ss_pred HHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH------------HHhcC-----
Q 011362 366 LFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRG------------FIRIN----- 428 (487)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g----- 428 (487)
.++++.+.. +.+..+|..++.+|...|++++|...++++.+... -+...+..+..+ |...|
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~ 394 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA 394 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence 999987653 45688999999999999999999999999998532 245666666533 33334
Q ss_pred ChhHHHHHHHHH-HhcCCCCC-----------HHHHHHHHHHHHhcccc
Q 011362 429 EPSKVIELLHKM-KEINVMPD-----------ASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 429 ~~~~a~~~~~~~-~~~~~~~~-----------~~~~~~l~~~~~~~g~~ 465 (487)
+.+++.+.++++ +. ..|| ...+..+..++...|+-
T Consensus 395 ~~~~~~~~y~~~~l~--~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 395 KKQEIIKAYRKLALQ--WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp CTTHHHHHHHHHHHH--SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred CHHHHHHHHHHHHHH--hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 567778888874 33 2233 12566666777666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-25 Score=209.85 Aligned_cols=389 Identities=11% Similarity=0.034 Sum_probs=303.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.++... |.++.+|..++.+|...|++++|++.|+++.+.+ +.+..++..++.++...|++++|+..
T Consensus 38 ~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~ 115 (537)
T 3fp2_A 38 AKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTDAMFD 115 (537)
T ss_dssp TTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999999986 5589999999999999999999999999999886 56788899999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CCCCHh-------------------
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN------IKPNVV------------------- 135 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~------------------- 135 (487)
|+ ..... |+ .....+..+...+....|...++.+.... ..|+..
T Consensus 116 ~~-~~~~~--------~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 116 LS-VLSLN--------GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HH-HHC---------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HH-HHhcC--------CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 97 44332 11 11222334445555677888887775431 111111
Q ss_pred -----------hHHHHHHHHHh--------cCChhhHHHHHHHHHHcCCCCC-------hhhHHHHHHHHHhCCChHHHH
Q 011362 136 -----------TYTSVIRGFCY--------AKDWNEAKRLFIEMMDQGVQPN-------VVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 136 -----------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~ 189 (487)
....+...+.. .+++++|..+++++.+..+. + ...+..+...+...|++++|.
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~ 263 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQ 263 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHH
Confidence 12222222222 24789999999998875332 2 224666777888999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 269 (487)
..++.+.+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++....
T Consensus 264 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 264 VLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 999999986 4558889999999999999999999999998875 5678889999999999999999999999998864
Q ss_pred CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-----CCh
Q 011362 270 IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCE-----FDI 344 (487)
Q Consensus 270 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~ 344 (487)
+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++.+...... ...
T Consensus 341 ~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 341 PE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp TT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 33 56788889999999999999999999998874 455678889999999999999999999998754311 112
Q ss_pred HhHHHHHHHHHhc----------CCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCC
Q 011362 345 RAYNSLIDGLCKS----------GRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENA 409 (487)
Q Consensus 345 ~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 409 (487)
..+......+... |++++|...|+++.+.. +.+..++..+..+|...|++++|...|+++.+..
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 2244555677777 99999999999998753 4567889999999999999999999999999853
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-21 Score=176.27 Aligned_cols=332 Identities=10% Similarity=0.014 Sum_probs=207.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|+..++++.+.. |.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-------MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCcchH
Confidence 45667888888999999999999999988875 5567788888899999999999999999988865 556788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CCHhhHHHH------------HHHHHhcCChhhHHHHHHHHHHcCCCC
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIK--PNVVTYTSV------------IRGFCYAKDWNEAKRLFIEMMDQGVQP 167 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 167 (487)
+..++.++...|++++|...|+++.+.... .+...+..+ ...+...|++++|...++++.+..+ .
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~ 152 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-W 152 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-T
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-C
Confidence 888999999999999999999988876310 234444444 3445555555555555555554422 2
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 011362 168 NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILIN 247 (487)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (487)
+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~ 230 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 230 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHH
Confidence 34444555555555555555555555555442 2244455555555555555555555555554432 112221111100
Q ss_pred HHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHHhCC
Q 011362 248 GYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADT----WTYRTFIDGLCKNG 323 (487)
Q Consensus 248 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 323 (487)
. . .......+...+...|++++|...++++.+... .+. ..+..+..++...|
T Consensus 231 ~-----------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 231 V-----------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEP-SVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp H-----------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-SSHHHHHHHHHHHHHHHHHTT
T ss_pred H-----------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHcc
Confidence 0 0 000112234556677777777777777766432 122 22445666777777
Q ss_pred CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 324 YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 324 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
++++|...++.+.+.. +.++.++..+...+...|++++|...|+++.+.. +.+...+..+..+..
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 7777777777777654 4566777777777777788888888887777653 333455555555544
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-21 Score=174.95 Aligned_cols=335 Identities=10% Similarity=-0.002 Sum_probs=229.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
++..+..++..+...|++++|+..|+++.+.. |.+...+..++.++...|++++|...++++.+.. +.+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 73 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-------PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAA 73 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchH
Confidence 34567778888888899999999998888765 5667888888888888899999999888887763 336678
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGF 214 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (487)
+..+..++...|++++|...++++.+.... .+...+..+...+. ...+..+...+
T Consensus 74 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~ 130 (359)
T 3ieg_A 74 RLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDA 130 (359)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHH
Confidence 888888888888888888888888775320 12333333311100 01122234455
Q ss_pred HcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHH
Q 011362 215 CLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAF 294 (487)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 294 (487)
...|++++|...++.+.+.. +.+...+..+..++...|++++|...++++....+ .+...+..+...+...|++++|.
T Consensus 131 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~ 208 (359)
T 3ieg_A 131 FDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSL 208 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence 55566666666666555543 34455555556666666666666666666555422 24455555566666666666666
Q ss_pred HHHHHHHHcCCCCcHHh------------HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCh----HhHHHHHHHHHhcC
Q 011362 295 KLFDEMQRNGVAADTWT------------YRTFIDGLCKNGYIVEAVELFHTLRILKCEFDI----RAYNSLIDGLCKSG 358 (487)
Q Consensus 295 ~~~~~~~~~~~~~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 358 (487)
..++.+.+.. +.+... ...+...+...|++++|...++.+.... +.+. ..+..+..++...|
T Consensus 209 ~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~ 286 (359)
T 3ieg_A 209 SEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDE 286 (359)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHcc
Confidence 6666655542 122222 2234667899999999999999998765 3333 23556788999999
Q ss_pred CHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 011362 359 RLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRIN 428 (487)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 428 (487)
++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+... .+...+..+..+....+
T Consensus 287 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 287 KPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE-NDQQIREGLEKAQRLLK 354 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHHH
Confidence 9999999999998753 45788999999999999999999999999998642 24666777777665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-20 Score=171.03 Aligned_cols=363 Identities=14% Similarity=0.033 Sum_probs=232.5
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHH
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCA----ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR----TSHTIVALN 79 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~ 79 (487)
+..+....+.| ++.++..+...|.. .+++++|+.+|++..+.| +...+..+...|.. .+++++|..
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 100 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVI 100 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44455544432 56666666777766 677777777777776643 45566666777766 677777777
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChh
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWN 151 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 151 (487)
+|++..+.+ ++..+..|...|.. .+++++|..+|++..+.| +...+..+...|.. .++++
T Consensus 101 ~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 168 (490)
T 2xm6_A 101 WYKKAALKG---------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYV 168 (490)
T ss_dssp HHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHCC---------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 777776543 45566666666666 667777777777776654 45566666666665 56777
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHhHH
Q 011362 152 EAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHA 223 (487)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a 223 (487)
+|++.|++..+.+ +...+..+...|.. .+++++|..+|+...+.+ +...+..+...+.. .+++++|
T Consensus 169 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A 242 (490)
T 2xm6_A 169 MAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQS 242 (490)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 7777777776653 45566666666666 677777777777766653 44555566666654 6677777
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc-----CCHHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI-----HQVERAF 294 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~ 294 (487)
..+|++..+.+ +...+..+..+|.. .+++++|...|++..+.+ +...+..+...+... +++++|.
T Consensus 243 ~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 243 RVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 77777766543 34455556666665 667777777777766543 334555555666555 6777777
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHhCC---CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHH
Q 011362 295 KLFDEMQRNGVAADTWTYRTFIDGLCKNG---YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK----SGRLEIALELF 367 (487)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 367 (487)
..+++..+.+ +...+..+...|...| ++++|..+|++..+.+ ++..+..+...|.. .+++++|...|
T Consensus 317 ~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 317 SWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 7777766653 3345555666665545 5667777777766543 45566666666666 66777777777
Q ss_pred HhccCCCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCC
Q 011362 368 RSLPCGVLVPNVVTYSIMIGGLCN----DGQMDKARDLFLDMEENA 409 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 409 (487)
++..+.+ +...+..+...|.. .+++++|...|++..+.+
T Consensus 391 ~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 391 RKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 7766543 45566666666665 667777777777776654
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-19 Score=165.83 Aligned_cols=366 Identities=11% Similarity=0.016 Sum_probs=309.6
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----c
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCR----TSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----E 112 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 112 (487)
.+...++...+ ..++..+..+...|.. .+++++|+.+|++..+.+ ++..+..|...|.. .
T Consensus 25 ~~~~~~~~~a~---~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---------~~~a~~~Lg~~y~~g~g~~ 92 (490)
T 2xm6_A 25 VNLEQLKQKAE---SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---------YTPAEYVLGLRYMNGEGVP 92 (490)
T ss_dssp CCHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCCC
Confidence 34566666655 3477888888888888 899999999999998754 56788889999998 8
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh----CCC
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK----NGK 184 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 184 (487)
+++++|.++|++..+.| +...+..|...|.. .+++++|+..|++..+.| +...+..+...|.. .++
T Consensus 93 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d 166 (490)
T 2xm6_A 93 QDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRD 166 (490)
T ss_dssp CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999998875 66788889999988 789999999999998875 56677788888887 789
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCCHh
Q 011362 185 MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCK----NKEIE 256 (487)
Q Consensus 185 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 256 (487)
+++|..+|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .++++
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999998874 67788888888887 899999999999998865 56678888888886 88999
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhC-----CCHhH
Q 011362 257 GALSLYSEMLSKGIKPDVVIHNTLFVGLFE----IHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKN-----GYIVE 327 (487)
Q Consensus 257 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~ 327 (487)
+|..+|++..+.+ +...+..+...+.. .++.++|...|++..+.+ +...+..+...|... +++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 9999999998864 45566777777777 899999999999998764 456777788888877 89999
Q ss_pred HHHHHHHHHHcCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc----cCCHHHHHH
Q 011362 328 AVELFHTLRILKCEFDIRAYNSLIDGLCKSG---RLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN----DGQMDKARD 400 (487)
Q Consensus 328 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 400 (487)
|...+++..+.+ +...+..+...|...| ++++|...|++..+.+ +...+..+...|.. .+++++|..
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 999999998865 4567778888887766 7899999999998753 67788889999988 899999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHhcCC
Q 011362 401 LFLDMEENAVVPNVITFDMLIRGFIR----INEPSKVIELLHKMKEINV 445 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 445 (487)
.|++..+.+ +...+..+...|.. .+++++|...|++..+.+.
T Consensus 389 ~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 389 WMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999999865 57778888888988 8999999999999998763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.8e-20 Score=173.11 Aligned_cols=418 Identities=10% Similarity=0.007 Sum_probs=305.0
Q ss_pred HHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011362 10 VLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
+|++.++.. |.+..+|..++. +.+.|++++|..+|+++++.. |.+...|...+..+.+.|++++|..+|+++....
T Consensus 1 ~le~al~~~-P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~- 76 (530)
T 2ooe_A 1 MAEKKLEEN-PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV- 76 (530)
T ss_dssp CHHHHHHHC-TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC-
T ss_pred ChhhHhhhC-CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-
Confidence 367777775 558999999998 478999999999999999874 5677889999999999999999999999999864
Q ss_pred CCccccccchHHHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCC-CCHhhHHHHHHHHHh---------cCChhhH
Q 011362 90 EFGVVCEPNTVTYTTIIDGL-CKEGFVDKAKE----LLLQMKDK-NIK-PNVVTYTSVIRGFCY---------AKDWNEA 153 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a 153 (487)
|+...|..++... ...|+.+.|.+ +|+..... |.. ++...|...+....+ .|+++.|
T Consensus 77 -------p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a 149 (530)
T 2ooe_A 77 -------LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAV 149 (530)
T ss_dssp -------CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHH
T ss_pred -------CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHH
Confidence 5777888877543 45677777665 77766543 433 356678777776654 6889999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHH-------------HhCCChHHHHHHHHHHH------HCC---CCCC--------
Q 011362 154 KRLFIEMMDQGVQPNVVTFNVIMDEL-------------CKNGKMDEASRLLDLMI------QHG---VRPD-------- 203 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~-------- 203 (487)
..+|++.++....+....|....... ...+++..|..++.... +.. ++|+
T Consensus 150 ~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 150 RRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 99999998731111122333222211 12345667777666532 211 2333
Q ss_pred HHHHHHHHHHHHcC----CCH----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc-------cCCHh-------HHHHH
Q 011362 204 AFTYNTLLDGFCLT----GRV----NHAKELFVSMESMGCKHTVFSYSILINGYCK-------NKEIE-------GALSL 261 (487)
Q Consensus 204 ~~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~ 261 (487)
...|...+...... ++. .++..+|+++.... |.++..|..++..+.+ .|+++ +|..+
T Consensus 230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~ 308 (530)
T 2ooe_A 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308 (530)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence 24555544333221 232 36778888887763 6678888888888875 78877 89999
Q ss_pred HHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-H-HhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 262 YSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAAD-T-WTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
+++....-.+.+...+..++..+...|++++|..+|+++.+. .|+ . ..|...+..+.+.|++++|..+|++..+..
T Consensus 309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 309 YERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp HHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 999986323346778888899999999999999999999985 443 2 478888888888999999999999998753
Q ss_pred CCCChHhHHHHHHH-HHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC-CCC--HH
Q 011362 340 CEFDIRAYNSLIDG-LCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV-VPN--VI 415 (487)
Q Consensus 340 ~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~--~~ 415 (487)
+.+...+...+.. +...|++++|..+|+...+.. +.+...|..++..+...|+.++|..+|+++...+. .|+ ..
T Consensus 387 -~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~ 464 (530)
T 2ooe_A 387 -RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464 (530)
T ss_dssp -TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred -CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence 3333444333322 346899999999999888752 44678899999999999999999999999988632 232 45
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 011362 416 TFDMLIRGFIRINEPSKVIELLHKMKEI 443 (487)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 443 (487)
.|..++......|+.+.+..+.+++.+.
T Consensus 465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 465 IWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7888888888899999999999999864
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-21 Score=169.25 Aligned_cols=271 Identities=11% Similarity=-0.004 Sum_probs=185.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+.+...+..++..+...|++++|+++|+++.+.. +.+...+..++..+...|++++|..+++++.+.. |.+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~ 90 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-------PSNP 90 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTST
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCH
Confidence 4566777778888888888888888888888765 4455566677778888888888888888888765 5667
Q ss_pred HHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011362 100 VTYTTIIDGLCKEG-FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE 178 (487)
Q Consensus 100 ~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (487)
..+..+...+...| ++++|.+.|+++.+.. +.+...|..+...+...|++++|...++++.+.... +...+..+...
T Consensus 91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~ 168 (330)
T 3hym_B 91 VSWFAVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLE 168 (330)
T ss_dssp HHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence 78888888888888 8888888888887764 335677888888888888888888888888776433 44556667777
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC--------CCCCHhhHHHHHHHHH
Q 011362 179 LCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG--------CKHTVFSYSILINGYC 250 (487)
Q Consensus 179 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~ 250 (487)
+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..+..++.
T Consensus 169 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~ 247 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCR 247 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHH
Confidence 778888888888888777653 2356667777777777777777777777665431 0222344555555555
Q ss_pred ccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011362 251 KNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 251 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
..|++++|...+++....... +...+..+...+...|++++|...++++.+
T Consensus 248 ~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 298 (330)
T 3hym_B 248 KLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALG 298 (330)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTT
T ss_pred HhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHc
Confidence 555555555555555543221 333444444444455555555555544444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-20 Score=163.94 Aligned_cols=287 Identities=14% Similarity=0.036 Sum_probs=187.4
Q ss_pred ccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 011362 96 EPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVI 175 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 175 (487)
+.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|...++++.+... .+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHH
Confidence 4455666777777777788888888887777653 33555666677777777888888888777776532 255666677
Q ss_pred HHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 011362 176 MDELCKNG-KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE 254 (487)
Q Consensus 176 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (487)
...+...| ++++|...++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777777 77777777777776532 245667777777777777777777777776654 3345556667777777777
Q ss_pred HhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CCCcHHhHHHHHHHHHhCCCHh
Q 011362 255 IEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG--------VAADTWTYRTFIDGLCKNGYIV 326 (487)
Q Consensus 255 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~ 326 (487)
+++|...++++....+ .+...+..+...+...|++++|...++++.+.. .+....++..+...+...|+++
T Consensus 175 ~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 7777777777766533 245566666677777777777777776665531 0222345666666666666666
Q ss_pred HHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH
Q 011362 327 EAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL 389 (487)
Q Consensus 327 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (487)
+|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence 6666666666554 4455566666666666666666666666666542 33445555555555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.89 E-value=9.1e-19 Score=165.77 Aligned_cols=397 Identities=10% Similarity=-0.003 Sum_probs=290.5
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG-LCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~ 79 (487)
.|++++|+.+|++++... |.+...|..++..+.+.|++++|..+|++++.. .|+...|...+.. ....|+.+.|.+
T Consensus 25 ~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~ 101 (530)
T 2ooe_A 25 NQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKE 101 (530)
T ss_dssp SSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHH
T ss_pred hCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHH
Confidence 378999999999999985 668889999999999999999999999999987 4677777777653 345677777665
Q ss_pred ----HHHHHHhCCCCCccccccchHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH--
Q 011362 80 ----LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK---------EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF-- 144 (487)
Q Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 144 (487)
+|+.....-+. -+++...|...+....+ .|+++.|..+|++..+....+....|.......
T Consensus 102 ~~~~~~~~al~~~g~----~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 102 KMAQAYDFALDKIGM----EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp HHHHHHHHHHHHTTT----STTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCC----CcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 77776653210 13457788888877655 688999999999998831111123443322211
Q ss_pred -----------HhcCChhhHHHHHHHHH------HcC---CCCC--------hhhHHHHHHHHHhC----CCh----HHH
Q 011362 145 -----------CYAKDWNEAKRLFIEMM------DQG---VQPN--------VVTFNVIMDELCKN----GKM----DEA 188 (487)
Q Consensus 145 -----------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~~l~~~~~~~----~~~----~~a 188 (487)
...+++..|..++.... +.. ++|+ ...|...+...... ++. .++
T Consensus 178 ~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a 257 (530)
T 2ooe_A 178 INIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRV 257 (530)
T ss_dssp HCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHH
T ss_pred hchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHH
Confidence 13456677777776532 111 2333 13444444332221 232 377
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHc-------CCCHh-------HHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC
Q 011362 189 SRLLDLMIQHGVRPDAFTYNTLLDGFCL-------TGRVN-------HAKELFVSMESMGCKHTVFSYSILINGYCKNKE 254 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 254 (487)
..+|++++... +.+...|..++..+.+ .|+++ +|..++++..+.-.|.+...|..++..+.+.|+
T Consensus 258 ~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~ 336 (530)
T 2ooe_A 258 MFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMK 336 (530)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCC
Confidence 78898888763 3478888888888775 78887 899999999863236678889999999999999
Q ss_pred HhHHHHHHHHHHHCCCccCh-hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH-HHhCCCHhHHHHHH
Q 011362 255 IEGALSLYSEMLSKGIKPDV-VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDG-LCKNGYIVEAVELF 332 (487)
Q Consensus 255 ~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~ 332 (487)
+++|..+|++++...+. +. ..|..++..+.+.|+.++|..+|++..+.. +.+...+...+.. +...|+.++|..+|
T Consensus 337 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~ 414 (530)
T 2ooe_A 337 YEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIF 414 (530)
T ss_dssp HHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHH
Confidence 99999999999985322 32 478888888889999999999999998863 2233333332222 34689999999999
Q ss_pred HHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC-CCCc--HHHHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 011362 333 HTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV-LVPN--VVTYSIMIGGLCNDGQMDKARDLFLDMEEN 408 (487)
Q Consensus 333 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 408 (487)
+...+.. +.++..|..++..+.+.|+.++|..+|+++...+ ..|+ ...|...+......|+.+.+..+++++.+.
T Consensus 415 e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 415 ELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9998764 5678899999999999999999999999988653 1232 347888888888899999999999999874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=7e-21 Score=171.99 Aligned_cols=294 Identities=13% Similarity=0.014 Sum_probs=226.1
Q ss_pred HHHhcCCHHHHHH-HHHHHHhcCCC-C--CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 32 GLCAESRIMEAAA-LFTKLRVFGCE-P--DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 32 ~~~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
++...|++++|++ .|++....... | +...+..++..+...|++++|+..|+++.+.. |.+...+..++.
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~ 106 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-------PKHMEAWQYLGT 106 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 4455688999998 88876654311 1 34567788889999999999999999998876 667888899999
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHH-H------------
Q 011362 108 GLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFN-V------------ 174 (487)
Q Consensus 108 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~------------ 174 (487)
++...|++++|...|+++.+.. +.+..++..++.++...|++++|...++++...... +...+. .
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 184 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPS 184 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC--------------
T ss_pred HHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHH
Confidence 9999999999999999988764 447788888999999999999999999998886433 222221 1
Q ss_pred --HHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc
Q 011362 175 --IMDELCKNGKMDEASRLLDLMIQHGVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCK 251 (487)
Q Consensus 175 --l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 251 (487)
.+..+...|++++|...++.+.+..... +..++..+...+...|++++|...++++.... +.+...+..+..++..
T Consensus 185 ~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 185 KRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLAN 263 (368)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHH
Confidence 2333448899999999999998764322 57888999999999999999999999988775 5667889999999999
Q ss_pred cCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------cHHhHHHHHHHHHh
Q 011362 252 NKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAA----------DTWTYRTFIDGLCK 321 (487)
Q Consensus 252 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~ 321 (487)
.|++++|...++++....+ .+...+..+...+...|++++|...++++.+..... ...++..+..++..
T Consensus 264 ~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 342 (368)
T 1fch_A 264 GNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSM 342 (368)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHH
Confidence 9999999999999887643 366788889999999999999999999887642111 15788999999999
Q ss_pred CCCHhHHHHHHHHHH
Q 011362 322 NGYIVEAVELFHTLR 336 (487)
Q Consensus 322 ~~~~~~a~~~~~~~~ 336 (487)
.|++++|..++.+..
T Consensus 343 ~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 343 LGQSDAYGAADARDL 357 (368)
T ss_dssp HTCGGGHHHHHTTCH
T ss_pred hCChHhHHHhHHHHH
Confidence 999999998887544
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.9e-20 Score=169.15 Aligned_cols=289 Identities=11% Similarity=-0.012 Sum_probs=193.7
Q ss_pred cCChhhHHH-HHHHHHHcCCC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH
Q 011362 147 AKDWNEAKR-LFIEMMDQGVQ---PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 222 (487)
Q Consensus 147 ~~~~~~a~~-~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (487)
.|++++|.. .+++....... .+...+..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 466666666 66654433211 124456666777777777777777777777653 2356667777777777777777
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHH---------------HHHHHHhc
Q 011362 223 AKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNT---------------LFVGLFEI 287 (487)
Q Consensus 223 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~ 287 (487)
|...++++.+.. +.+..++..+..+|...|++++|...++++....+. +...+.. .+..+...
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 777777776664 456667777777777777777777777777765332 1111110 12333377
Q ss_pred CCHHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 011362 288 HQVERAFKLFDEMQRNGVAA-DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALEL 366 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (487)
|++++|...+.++.+..... +..++..+...+...|++++|...++++.... +.+..++..++..+...|++++|...
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 273 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAA 273 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 88888888888887753221 46777788888888888888888888887764 55677788888888888888888888
Q ss_pred HHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC----------CHHHHHHHHHHHHhcCChhHHHHH
Q 011362 367 FRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP----------NVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
++++.+.. +.+..++..+..+|...|++++|...|+++.+..... ...+|..+..++...|++++|..+
T Consensus 274 ~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 274 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 88877643 4456778888888888888888888888876532111 156778888888888888888877
Q ss_pred HHHH
Q 011362 437 LHKM 440 (487)
Q Consensus 437 ~~~~ 440 (487)
+++.
T Consensus 353 ~~~~ 356 (368)
T 1fch_A 353 DARD 356 (368)
T ss_dssp HTTC
T ss_pred HHHH
Confidence 7644
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=4e-18 Score=159.39 Aligned_cols=391 Identities=9% Similarity=-0.109 Sum_probs=252.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVF--------GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFG 92 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 92 (487)
.....|+.|...+...|++++|++.|++..+. ..+....+|..+..+|...|++++|...++++.+..+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34677999999999999999999999997653 1123456788999999999999999999998765321110
Q ss_pred cc-cccchHHHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH---HhcCChhhHHHHHHHHHHcCCC
Q 011362 93 VV-CEPNTVTYTTIIDGLCKE--GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF---CYAKDWNEAKRLFIEMMDQGVQ 166 (487)
Q Consensus 93 ~~-~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~ 166 (487)
.. .+....++..+..++... +++++|++.|++..+.. |-++..+..+..++ ...++.++|++.+++..+..+.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence 00 122356677666666554 57899999999998864 23555666555553 4567888999999998876433
Q ss_pred CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhH
Q 011362 167 PNVVTFNVIMDELCK----NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242 (487)
Q Consensus 167 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 242 (487)
+...+..+...+.. .+++++|.++++...... +.+..++..+...+...|++++|...++++.+.. |.+..++
T Consensus 208 -~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 284 (472)
T 4g1t_A 208 -NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH 284 (472)
T ss_dssp -CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred -chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence 45555555554443 467789999999888764 3467888899999999999999999999998875 5566777
Q ss_pred HHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhC
Q 011362 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKN 322 (487)
Q Consensus 243 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 322 (487)
..+..+|...+.... ... ...........+..+.|...+....+.. +.+...+..+...+...
T Consensus 285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 777766643211111 100 0000111112334577888888877753 34556777888888999
Q ss_pred CCHhHHHHHHHHHHHcCCCCChH--hHHHHHH-HHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHH
Q 011362 323 GYIVEAVELFHTLRILKCEFDIR--AYNSLID-GLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKAR 399 (487)
Q Consensus 323 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 399 (487)
|++++|...|++.......+... .+..+.. .+...|++++|+..|++..+. .|+...... ....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 99999999998888765332221 2223332 234678899999999888764 344332221 234455
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 400 DLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
+++++..... +.+..+|..+..+|...|++++|.+.|+++++.+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5666666543 3367788889999999999999999999998764
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-19 Score=162.94 Aligned_cols=267 Identities=9% Similarity=-0.047 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
...+..++..+.+.|++++|+..|+++.+.. |.+..++..++.++...|++++|+..|+++.+.. +.+..++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 136 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-------PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKAL 136 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 3345555666666666666666666666544 4455566666666666666666666666665542 2245556
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCC---------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHH
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQGVQP---------NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR-PDAFTY 207 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~ 207 (487)
..++.+|...|++++|...++++.+..... ....+..+...+...|++++|..+++.+.+.... .+..++
T Consensus 137 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 137 MALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 666666666666666666666665532110 0111223355666666666666666666654321 145566
Q ss_pred HHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhc
Q 011362 208 NTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEI 287 (487)
Q Consensus 208 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 287 (487)
..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...++++....+. +..++..+..++...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHC
Confidence 666666666666666666666666553 445566666666666666666666666666654222 355566666666666
Q ss_pred CCHHHHHHHHHHHHHcCCC-----------CcHHhHHHHHHHHHhCCCHhHHHHHHHH
Q 011362 288 HQVERAFKLFDEMQRNGVA-----------ADTWTYRTFIDGLCKNGYIVEAVELFHT 334 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 334 (487)
|++++|...++++.+.... .+...+..+..++...|+.+.+..+...
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 6666666666666543110 1245667777777777777777666554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-19 Score=158.21 Aligned_cols=378 Identities=12% Similarity=0.088 Sum_probs=168.5
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|.+.++++- ++.+|..++.++.+.|++++|++.|.+ .+|...|..++..+...|++++|+..
T Consensus 16 ~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~y 83 (449)
T 1b89_A 16 IGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 367899999999882 335899999999999999999999965 35777899999999999999999998
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|.+++|...|..+
T Consensus 84 l~~ark~--------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 84 LQMARKK--------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT
T ss_pred HHHHHHh--------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 8877763 3457788899999999999999888774 367779999999999999999999999976
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHh
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (487)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+ ...+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHh
Confidence 46999999999999999999999988 27899999999999999999996655432 23444
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC------cHHhHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN-GVAA------DTWTYR 313 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~ 313 (487)
....++..|.+.|.+++|..+++..+... +.....|..+..+|++- ++++..+.++...+. +++| +...|.
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 46678899999999999999999988764 33556677776666543 334443333322221 1222 346778
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcC-----------CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHH
Q 011362 314 TFIDGLCKNGYIVEAVELFHTLRILK-----------CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTY 382 (487)
Q Consensus 314 ~l~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 382 (487)
.++..|...++++.|....-.-.... ...+...|-..+..|... .+..-..++.-+.. ..| .
T Consensus 287 e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~-~p~~l~~ll~~l~~---~ld---~ 359 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-KPLLLNDLLMVLSP---RLD---H 359 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGG---GCC---H
T ss_pred HHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc-CHHHHHHHHHHHHh---ccC---c
Confidence 88888889999998876443321110 022344444444444411 11111111111110 001 1
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 011362 383 SIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELL 437 (487)
Q Consensus 383 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 437 (487)
+..+..+.+.|++.-+..++..+...+ +...=.++-..|...+|++.-+...
T Consensus 360 ~r~v~~~~~~~~l~l~~~yl~~v~~~n---~~~vnealn~l~ieeed~~~lr~si 411 (449)
T 1b89_A 360 TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSI 411 (449)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhh---HHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 233444555666666666665555432 3333345555666777766544433
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-20 Score=166.49 Aligned_cols=267 Identities=12% Similarity=-0.010 Sum_probs=176.9
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILING 248 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (487)
...+..+...+.+.|++++|..+|+.+.+.. +.+..++..+...+...|++++|...|+++.+.. +.+...+..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3446666677777777777777777776653 2356677777777777777777777777776654 4456677777777
Q ss_pred HHccCCHhHHHHHHHHHHHCCCcc---------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHHhHHHHHHH
Q 011362 249 YCKNKEIEGALSLYSEMLSKGIKP---------DVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVA-ADTWTYRTFIDG 318 (487)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~ 318 (487)
|...|++++|...++++....+.. ....+..+...+...|++++|...++++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 777777777777777776642110 0112233466677777888888888777775321 156677777777
Q ss_pred HHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHH
Q 011362 319 LCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKA 398 (487)
Q Consensus 319 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 398 (487)
+...|++++|...++++.+.. +.+..++..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence 888888888888888877664 5567777788888888888888888887776642 34467777778888888888888
Q ss_pred HHHHHHHHhCCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 399 RDLFLDMEENAVV-----------PNVITFDMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 399 ~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
...|+++.+.... .+...|..+..++...|+.+.+.++.++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 8888877653111 0245677777777788887777666554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-18 Score=158.01 Aligned_cols=389 Identities=11% Similarity=-0.065 Sum_probs=256.3
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-c-cccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----
Q 011362 56 PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEF-G-VVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----- 128 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 128 (487)
.....|+.+..++...|++++|++.|++..+..+.. + ...+....+|..+..+|...|++++|...+++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 345678999999999999999999999876521000 0 001334678999999999999999999999887642
Q ss_pred C--CCCCHhhHHHHHHHHHh--cCChhhHHHHHHHHHHcCCCCChhhHHHHHHH---HHhCCChHHHHHHHHHHHHCCCC
Q 011362 129 N--IKPNVVTYTSVIRGFCY--AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE---LCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 129 ~--~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
+ ......++..+..++.. .+++++|+..|++..+..+. ++..+..+..+ +...++.++|++.+++..+...
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p- 206 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP- 206 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence 1 11234566666655554 45799999999999886433 44455444444 4456788889999988887633
Q ss_pred CCHHHHHHHHHHHH----cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhH
Q 011362 202 PDAFTYNTLLDGFC----LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIH 277 (487)
Q Consensus 202 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 277 (487)
.+...+..+...+. ..+++++|.+.+++..... +.+...+..+...|...|++++|...+.+..+..+. +..++
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~ 284 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH 284 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence 35566665555444 4467889999999988775 667788899999999999999999999999876432 45555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS 357 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 357 (487)
..+...|...+... .... .. .........+..+.|...++...... +.+..++..+...|...
T Consensus 285 ~~lg~~y~~~~~~~---------~~~~-~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~ 347 (472)
T 4g1t_A 285 CQIGCCYRAKVFQV---------MNLR-EN------GMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA 347 (472)
T ss_dssp HHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHh---------hhHH-HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence 55555543221111 1100 00 00111112234678999999988776 56777889999999999
Q ss_pred CCHHHHHHHHHhccCCCCCCcH--HHHHHHHH-HHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 011362 358 GRLEIALELFRSLPCGVLVPNV--VTYSIMIG-GLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVI 434 (487)
Q Consensus 358 g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 434 (487)
|++++|...|+++.+....|.. ..+..+.. .....|++++|+..|++.++. .|+...... ....+.
T Consensus 348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~ 416 (472)
T 4g1t_A 348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ 416 (472)
T ss_dssp TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence 9999999999998875433222 12333333 345789999999999999984 455432222 223455
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccccccchh
Q 011362 435 ELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPSFTVHEQ 477 (487)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 477 (487)
+++++.+..+ +.+..++..++.++...|++++|++.|...-+
T Consensus 417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe 458 (472)
T 4g1t_A 417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLE 458 (472)
T ss_dssp HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6677777655 56778999999999999999999988876554
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-19 Score=155.96 Aligned_cols=233 Identities=10% Similarity=-0.011 Sum_probs=138.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...+..++..+...|++++|+.+|+++.+.. +.+..++..++..+...|++++|...++++.+.. |.+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 91 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAV 91 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------cCCHHH
Confidence 34556777888888889999998888888764 4567778888888888888888888888888765 556778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH--------------HH-HHHhcCChhhHHHHHHHHHHcCCC
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV--------------IR-GFCYAKDWNEAKRLFIEMMDQGVQ 166 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~ 166 (487)
+..++.++...|++++|.+.++++..... .+...+..+ .. .+...|++++|...++++.+....
T Consensus 92 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 170 (327)
T 3cv0_A 92 HAALAVSHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN 170 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC
Confidence 88888888888888888888888877532 233333332 11 244445555555555555544221
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHH
Q 011362 167 PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILI 246 (487)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 246 (487)
+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus 171 -~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 247 (327)
T 3cv0_A 171 -DAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMA 247 (327)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 34444445555555555555555555544432 1234444444444555555555555554444432 22334444444
Q ss_pred HHHHccCCHhHHHHHHHHHH
Q 011362 247 NGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~ 266 (487)
.++...|++++|...++++.
T Consensus 248 ~~~~~~g~~~~A~~~~~~a~ 267 (327)
T 3cv0_A 248 VSYSNMSQYDLAAKQLVRAI 267 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHH
Confidence 44444444444444444443
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-19 Score=155.61 Aligned_cols=263 Identities=12% Similarity=-0.040 Sum_probs=163.4
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 011362 173 NVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKN 252 (487)
Q Consensus 173 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (487)
..+...+...|++++|..+++.+.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..++...
T Consensus 25 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~ 102 (327)
T 3cv0_A 25 MEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE 102 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHc
Confidence 3334444444444444444444443321 133444444444444444444444444444432 33344444455555555
Q ss_pred CCHhHHHHHHHHHHHCCCccChhhHHH-------------H-HH-HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHH
Q 011362 253 KEIEGALSLYSEMLSKGIKPDVVIHNT-------------L-FV-GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 253 ~~~~~a~~~~~~~~~~~~~~~~~~~~~-------------l-~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 317 (487)
|++++|...++++...... +...+.. + .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus 103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 180 (327)
T 3cv0_A 103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV 180 (327)
T ss_dssp TCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 5555555555555443211 1111111 1 22 2667778888888888887764 346677788888
Q ss_pred HHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHH
Q 011362 318 GLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 318 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 397 (487)
.+...|++++|...++++.... +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++...|++++
T Consensus 181 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 181 LYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHH
Confidence 8888888888888888887765 5567778888888888888888888888877643 4456778888888888888888
Q ss_pred HHHHHHHHHhCCCCC-----------CHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 398 ARDLFLDMEENAVVP-----------NVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 398 A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
|...++++.+..... +...|..+..++...|++++|..++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 888888887643221 36677788888888888888888876544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-16 Score=156.95 Aligned_cols=388 Identities=11% Similarity=0.083 Sum_probs=274.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC--EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
+.--...+++|...|.+.+|+++++++...+- ..+...-+.++....+. +..+..++.++....
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~------------- 1050 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY------------- 1050 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------------
Confidence 33345567788888888888888888874321 02233444566555555 445555555554421
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (487)
....+...+...|.+++|..+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++.
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQL 1116 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHH
Confidence 123367778888899999999888531 2233333332 6778888888887652 4677888999999
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHH
Q 011362 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALS 260 (487)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 260 (487)
..|++++|+..|.+. .|...|..++.++.+.|++++|.+.+....+.. +++...+.++.+|.+.++++....
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 999999999998653 367788888999999999999999998877664 333344468888888888875443
Q ss_pred HHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC
Q 011362 261 LYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC 340 (487)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 340 (487)
+. . .++...+..+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.+++.
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 32 2 245566777888888999999999998875 36888888999999999999998876
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDML 420 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 420 (487)
.+..+|..+..+|...|++..|......+ ..++..+..++..|...|.+++|+.+++..+... +-....|+.+
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 35678888888888899988888876643 2356667788889999999999999998887643 2244566666
Q ss_pred HHHHHhc--CChhHHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcccccccccccccch
Q 011362 421 IRGFIRI--NEPSKVIELLHKMKEINVMP------DASIVSIVVDLLAKNEISLNSLPSFTVHE 476 (487)
Q Consensus 421 ~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 476 (487)
...|.+. ++..++.+.|..-. ++++ +...|..+...|.+.|.+..|+..+-.++
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~ 1382 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHP 1382 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhcc
Confidence 6666654 34444555544332 2333 46778888889999999988886665554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-19 Score=155.72 Aligned_cols=373 Identities=12% Similarity=0.057 Sum_probs=179.9
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
.+.|++++|.++++++. ++.+|..++.++.+.|++++|++.|.+. ++...|..++.++...|
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------------CCHHHHHHHHHHHHhCC
Confidence 36688999999999972 2348999999999999999999999652 45678999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHH
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLD 193 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 193 (487)
++++|+..++..++. .+++.+...++.+|.+.|++.++.++++ .|+..+|..+...|...|.+++|..+|.
T Consensus 76 ~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 76 NWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988877764 3457788889999999999999988875 3677799999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC
Q 011362 194 LMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD 273 (487)
Q Consensus 194 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 273 (487)
.+ ..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. ..
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ 206 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VH 206 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TC
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hC
Confidence 76 47889999999999999999999888 267899999999999999999966555422 23
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHH-HcCCCC------ChHh
Q 011362 274 VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLR-ILKCEF------DIRA 346 (487)
Q Consensus 274 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~~~~------~~~~ 346 (487)
+.-...++..|.+.|.+++|..+++...... +.....|+.+..+|++- .+++..+.++... ..++++ +...
T Consensus 207 ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 207 ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3445568888999999999999999998765 55677888887777764 3444433333322 223333 4667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC-----------CCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHH
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGV-----------LVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVI 415 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 415 (487)
|..+...|...++++.|....-+-.... ...+...|...+..|.. ....++.-+-......+ |.
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~l--d~- 359 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRL--DH- 359 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGC--CH-
T ss_pred HHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcc--Cc-
Confidence 8899999999999998877654433210 13456666666666662 22233333333332112 22
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 416 TFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 416 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
...+..+.+.|+..-+...++..... ....+-.++-+.|...+++
T Consensus 360 --~r~v~~~~~~~~l~l~~~yl~~v~~~---n~~~vnealn~l~ieeed~ 404 (449)
T 1b89_A 360 --TRAVNYFSKVKQLPLVKPYLRSVQNH---NNKSVNESLNNLFITEEDY 404 (449)
T ss_dssp --HHHHHHHHHTTCTTTTHHHHHHHHTT---CCHHHHHHHHHHHHHTTCH
T ss_pred --HHHHHHHHHcCCcHHHHHHHHHHHHh---hHHHHHHHHHHHHHhhhhH
Confidence 34556667788877777777776653 3455555666666666666
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1e-15 Score=150.63 Aligned_cols=395 Identities=12% Similarity=0.102 Sum_probs=292.4
Q ss_pred CCccchHHHHHHHHHhCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCF--TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
+|.+.+|+++|+.++-.+. ..+....+.++.+..+. +..+..++.+++... + ...+...+...|.+++|.
T Consensus 998 aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf 1069 (1630)
T 1xi4_A 998 ADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAF 1069 (1630)
T ss_pred CCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHH
Confidence 4889999999999994421 13456667788777777 567777777666522 1 334778888999999999
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
.+|++... .....+.++. ..+++++|.++.++.. +..+|..+..++...|++++|++.|.
T Consensus 1070 ~IYkKa~~-----------~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYi 1129 (1630)
T 1xi4_A 1070 AIFRKFDV-----------NTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYI 1129 (1630)
T ss_pred HHHHHcCC-----------HHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999632 2333344443 6688999999988652 57789999999999999999999997
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT 238 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 238 (487)
+. -+...|..++.++.+.|++++|.++|....+.. +++...+.++.+|++.+++++...+. + .++
T Consensus 1130 KA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1130 KA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred hc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 64 377788889999999999999999999887764 34334445888999999888544432 2 345
Q ss_pred HhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 011362 239 VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDG 318 (487)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (487)
...+..+...|...|++++|..+|... ..|..++.++.+.|++++|.+.+++. .+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 667778999999999999999999885 37889999999999999999998876 345788888889
Q ss_pred HHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc--CCHH
Q 011362 319 LCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND--GQMD 396 (487)
Q Consensus 319 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~ 396 (487)
|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+... +-+...|..+...|++. ++..
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHH
Confidence 99999999988876642 4566777889999999999999999998887654 44556776777766654 3455
Q ss_pred HHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhcCChhHHHHHH-------------HHHHhcCCCCCHHHHHHHHH
Q 011362 397 KARDLFLDMEENAVVP------NVITFDMLIRGFIRINEPSKVIELL-------------HKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 397 ~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~-------------~~~~~~~~~~~~~~~~~l~~ 457 (487)
++.++|..-.. ++| +...|..++-.|.+.|+++.|...+ +.... ...+..+|...+.
T Consensus 1334 Ehlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~ 1409 (1630)
T 1xi4_A 1334 EHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQ 1409 (1630)
T ss_pred HHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHH
Confidence 55555543322 222 4567888888899999999887322 22111 2445666666666
Q ss_pred HHHhcc
Q 011362 458 LLAKNE 463 (487)
Q Consensus 458 ~~~~~g 463 (487)
-|-...
T Consensus 1410 Fyl~~~ 1415 (1630)
T 1xi4_A 1410 FYLEFK 1415 (1630)
T ss_pred HHHhhC
Confidence 555444
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.9e-18 Score=146.64 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=157.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDV--FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
++.....|+++.|+..+++.... .|+. .....+.++|...|+++.|+..++. .. +|+..++..+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~-------~~~~~a~~~la~ 73 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SS-------APELQAVRMFAE 73 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TS-------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cC-------ChhHHHHHHHHH
Confidence 34556677777777777665443 2332 3445566777777777777765543 12 456667777777
Q ss_pred HHHhcCChhHHHHHHHHHHhCCC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChH
Q 011362 108 GLCKEGFVDKAKELLLQMKDKNI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMD 186 (487)
Q Consensus 108 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (487)
.+...|+.++|++.++++...+. +-+...+..+...+...|++++|++.+++ +.+...+..++..+.+.|+++
T Consensus 74 ~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~ 147 (291)
T 3mkr_A 74 YLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLD 147 (291)
T ss_dssp HHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHH
T ss_pred HHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHH
Confidence 77777777777777777766543 33455566666777777777777777765 345666666777777777777
Q ss_pred HHHHHHHHHHHCCCCCCHHH---HHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHH
Q 011362 187 EASRLLDLMIQHGVRPDAFT---YNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYS 263 (487)
Q Consensus 187 ~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 263 (487)
+|.+.++.+.+.. |+... ...++..+...|++++|..+|+++.+.. |.+...++.+..++.+.|++++|...++
T Consensus 148 ~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~ 224 (291)
T 3mkr_A 148 LARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQ 224 (291)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7777777776653 33211 1122233344566777777777766653 5566666667777777777777777777
Q ss_pred HHHHCCCccChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHc
Q 011362 264 EMLSKGIKPDVVIHNTLFVGLFEIHQVER-AFKLFDEMQRN 303 (487)
Q Consensus 264 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~ 303 (487)
+++...+. +..++..++..+...|+.++ +..+++++.+.
T Consensus 225 ~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 225 EALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 76664322 45556666666666666644 45666666554
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-18 Score=147.45 Aligned_cols=250 Identities=12% Similarity=0.022 Sum_probs=205.9
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++..|+..++.+....+.+.......+.++|...|+++.|+..++.. .+|+..++..+...+...++.++|++.
T Consensus 12 ~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~~ 87 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVAE 87 (291)
T ss_dssp TTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHHH
Confidence 4899999999988766542222346667889999999999999877552 366777888999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++++...+. .|.+...+..+..++...|++++|++.+++ +.+...+..++.++.+.|++++|.+.|+++
T Consensus 88 l~~ll~~~~-----~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 88 LDREMSRSV-----DVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHSCC-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccc-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999886531 145677888889999999999999999987 457889999999999999999999999999
Q ss_pred HHcCCCCChhhH---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC
Q 011362 161 MDQGVQPNVVTF---NVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKH 237 (487)
Q Consensus 161 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 237 (487)
.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++...|++++|...++++.... |.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 8874 443211 12334445668999999999999987 45588999999999999999999999999998876 67
Q ss_pred CHhhHHHHHHHHHccCCHhH-HHHHHHHHHHCC
Q 011362 238 TVFSYSILINGYCKNKEIEG-ALSLYSEMLSKG 269 (487)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~ 269 (487)
++.++..++..+...|+.++ +.++++++.+..
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 88899999999999999876 678999988753
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-17 Score=151.49 Aligned_cols=378 Identities=10% Similarity=-0.031 Sum_probs=241.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh---HHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHT---IVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+...+.+.|++++|+++|+++.+.| +...+..+...|...|+. ++|+.+|++..+ . ++..+..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~---------~-~~~A~~~ 74 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAAD---------T-SPRAQAR 74 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------------CHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHh---------C-CHHHHHH
Confidence 36777888999999999999998765 334455666777778888 899999988875 2 5667777
Q ss_pred HHHHHHhcC-----ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh---hhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 105 IIDGLCKEG-----FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW---NEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 105 l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
+...+...+ ++++|+.+|++..+.|. ...+..|...|...+.. .++.+.+......| +......+.
T Consensus 75 Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg 148 (452)
T 3e4b_A 75 LGRLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQV 148 (452)
T ss_dssp HHHHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHH
T ss_pred HHHHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 777566655 77899999999988763 33677788887766554 34555555555544 345666777
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-
Q 011362 177 DELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG---RVNHAKELFVSMESMGCKHTVFSYSILINGYCKN- 252 (487)
Q Consensus 177 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 252 (487)
..|...+.++++......+.+.-...++..+..+...|...| +.++|...|++..+.| +++...+..+..+|...
T Consensus 149 ~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~ 227 (452)
T 3e4b_A 149 LLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDAT 227 (452)
T ss_dssp HHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGG
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCC
Confidence 778777755544444333222211223347778888888888 8899999999988887 55666557777777654
Q ss_pred ---CCHhHHHHHHHHHHHCCCccChhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCC---
Q 011362 253 ---KEIEGALSLYSEMLSKGIKPDVVIHNTLFVG-L--FEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNG--- 323 (487)
Q Consensus 253 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 323 (487)
+++++|...|++.. +-++..+..+... + ...+++++|...|++..+.| +......+...|. .|
T Consensus 228 ~~~~d~~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~ 299 (452)
T 3e4b_A 228 LGTPDEKTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWV 299 (452)
T ss_dssp GSSCCHHHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSS
T ss_pred CCCCCHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCC
Confidence 78999999999887 2355666666666 4 46889999999999988865 5666777777776 44
Q ss_pred --CHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc----cC
Q 011362 324 --YIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN----DG 393 (487)
Q Consensus 324 --~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 393 (487)
++++|..+|++.. +-++.....|...|.. ..++++|...|++..+.| +......+...|.. ..
T Consensus 300 ~~d~~~A~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 300 PADAKAAEAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCCHHHHHHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCCHHHHHHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 8999999998887 3466777777777766 348999999999988765 34455666666664 45
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
++.+|...|+...+.|.. +.......+......++..+|.++.++-.
T Consensus 373 d~~~A~~~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~ 419 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL 419 (452)
T ss_dssp CHHHHHHHHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 888999999988887632 22222122221222234455555555543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.6e-17 Score=150.77 Aligned_cols=370 Identities=9% Similarity=-0.032 Sum_probs=250.5
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-----C
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRI---MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-----H 73 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~ 73 (487)
|++++|++.|+++.+.| ++.++..|...|...|++ ++|+.+|++..+. ++..+..+...+...+ +
T Consensus 17 g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~ 89 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAE 89 (452)
T ss_dssp HHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--CCHHH
T ss_pred CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcC
Confidence 68899999999999876 445556677778888888 9999999998853 5566777777555555 7
Q ss_pred hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 74 TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVD---KAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
+++|+.+|++..+.+ + ...+..|...|...+..+ .+.+.+......| +...+..+...|...+.+
T Consensus 90 ~~~A~~~~~~Aa~~g-------~--~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 90 HHEAESLLKKAFANG-------E--GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp HHHHHHHHHHHHHTT-------C--SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHCC-------C--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence 889999999999866 2 337777888887766543 4555565555544 456777888888888877
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCC---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC----CCHhHH
Q 011362 151 NEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG---KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT----GRVNHA 223 (487)
Q Consensus 151 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a 223 (487)
+++......+.+.-...++..+..+...|...| +.++|+..|+...+.|.. +...+..+...|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 666665444433322334457888999999999 899999999999988644 566556677777655 799999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHH-H--HccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcC-----CHHHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSILING-Y--CKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIH-----QVERAFK 295 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~ 295 (487)
...|++.. . -++..+..+..+ + ...+++++|...|++..+.| +......+...|. .| ++++|..
T Consensus 237 ~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~ 308 (452)
T 3e4b_A 237 QALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA 308 (452)
T ss_dssp HHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred HHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence 99999987 3 456677777776 4 56899999999999999875 5566777777776 55 9999999
Q ss_pred HHHHHHHcCCCCcHHhHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh----cCCHHHHHHHH
Q 011362 296 LFDEMQRNGVAADTWTYRTFIDGLCK----NGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK----SGRLEIALELF 367 (487)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~ 367 (487)
.|++.. . .+......+...|.. ..++++|..+|++..+.+ ++.....|...|.. ..++.+|...|
T Consensus 309 ~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 381 (452)
T 3e4b_A 309 HFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVFS 381 (452)
T ss_dssp HHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHHH
T ss_pred HHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 999887 3 356677777777766 348999999999998866 34556677777764 46899999999
Q ss_pred HhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 368 RSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 368 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
+...+.| .++.......+......++..+|..+.++..+
T Consensus 382 ~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 382 QLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9998876 33333222222222334456677777666554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.5e-17 Score=133.51 Aligned_cols=200 Identities=13% Similarity=0.039 Sum_probs=146.7
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
|++...+..+...+.+.|++++|+..|+++++.. +.+...+..+..++.+.|++++|+..|+++.+.. |.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-------P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-------PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcH
Confidence 5678889999999999999999999999999875 6678889999999999999999999999999876 6678
Q ss_pred HHHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 011362 100 VTYTTIIDGLCKE-----------GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN 168 (487)
Q Consensus 100 ~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 168 (487)
..+..+..++... |++++|+..|++..+.. +-+...+..+..++...|++++|+..|++..+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 8999999999888 77788887777777653 2356677777777777777777777777777765 46
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
...+..+..++...|++++|+..|+.+.+.. +.+...+..+...+...|++++|...+++..
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 6667777777777777777777777776653 2256666677777777777777777766553
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-16 Score=133.86 Aligned_cols=233 Identities=12% Similarity=0.006 Sum_probs=183.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
....|..+...+...|++++|+..|+++.+.. .+..++..++.++...|++++|+..++++.+..+..+...+.....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 35678889999999999999999999999887 7788999999999999999999999999887541100000001578
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
+..+..++...|++++|...|+++... .|+. ..+...|++++|...++++..... .+...+..+...+..
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNP-EKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHH
Confidence 899999999999999999999999885 3443 345566788899999988887532 245667778888888
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHH
Q 011362 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSL 261 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 261 (487)
.|++++|...++.+.+... .+..++..+...+...|++++|...++.+.+.. +.+...+..+..++...|++++|...
T Consensus 152 ~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 229 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALET 229 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888888877633 367778888888888888888888888887764 55677777888888888888888888
Q ss_pred HHHHHHC
Q 011362 262 YSEMLSK 268 (487)
Q Consensus 262 ~~~~~~~ 268 (487)
+++..+.
T Consensus 230 ~~~a~~~ 236 (258)
T 3uq3_A 230 LDAARTK 236 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-16 Score=130.55 Aligned_cols=201 Identities=12% Similarity=0.003 Sum_probs=150.1
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV 134 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 134 (487)
+++...+..+...+...|++++|+..|+++.+.. |.+...+..+..++.+.|++++|+..+++..+.. +.+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~ 73 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-------PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYL 73 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcH
Confidence 4567778888888999999999999999998876 6778888899999999999999999999888764 3467
Q ss_pred hhHHHHHHHHHhc-----------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 011362 135 VTYTSVIRGFCYA-----------KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD 203 (487)
Q Consensus 135 ~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 203 (487)
..+..+..++... |++++|+..|++..+..+. +...+..+..++...|++++|+..|++..+.. .+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 7888888888888 8888888888888876433 56677778888888888888888888888776 57
Q ss_pred HHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 204 AFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 204 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
...+..+..++...|++++|...|+++.+.. |.+...+..+..++...|++++|+..+++...
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC----------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 7788888888888888888888888887765 55677778888888888888888888776543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.1e-14 Score=132.96 Aligned_cols=445 Identities=9% Similarity=0.004 Sum_probs=308.3
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC---hHHHHHHH
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH---TIVALNLF 81 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~ 81 (487)
.+.+..|++.+..+ |.|...|..++..+.+.++++.+..+|++++..- +.....|...+..-.+.|. ++.+.++|
T Consensus 49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 45667888888887 5699999999999999999999999999999873 6677889888888888888 99999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCCh--------hHHHHHHHHHHh-CCC-CC-CHhhHHHHHHHHHh----
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV--------DKAKELLLQMKD-KNI-KP-NVVTYTSVIRGFCY---- 146 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~---- 146 (487)
++.....+ .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 127 eRal~~~~-----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~ 201 (679)
T 4e6h_A 127 ARCLSKEL-----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPV 201 (679)
T ss_dssp HHHTCSSS-----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHhcC-----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhcccc
Confidence 99998641 138889999988877666553 334577877654 354 44 45678777765432
Q ss_pred -----cCChhhHHHHHHHHHHcCCCCChhhHHHHH---HHHH----------hCCChHHHHHHHHHHHHC--CC----C-
Q 011362 147 -----AKDWNEAKRLFIEMMDQGVQPNVVTFNVIM---DELC----------KNGKMDEASRLLDLMIQH--GV----R- 201 (487)
Q Consensus 147 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~----------~~~~~~~a~~~~~~~~~~--~~----~- 201 (487)
.++.+.+..+|++++......-..+|.... ..+. ...+++.|...+..+... ++ +
T Consensus 202 ~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~ 281 (679)
T 4e6h_A 202 NKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPI 281 (679)
T ss_dssp SHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCS
T ss_pred CcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccc
Confidence 345678889999988531111112232211 1110 011233344444443211 11 1
Q ss_pred ----------C-----C---HHHHHHHHHHHHcCC-------CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHh
Q 011362 202 ----------P-----D---AFTYNTLLDGFCLTG-------RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIE 256 (487)
Q Consensus 202 ----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 256 (487)
| + ...|...+..--..+ ..+.+..+|+++...- +.....|...+..+...|+.+
T Consensus 282 ~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~ 360 (679)
T 4e6h_A 282 TLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDS 360 (679)
T ss_dssp SSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCT
T ss_pred ccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHH
Confidence 1 0 134555544333322 1234556788877653 667888999999888999999
Q ss_pred HHH-HHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------CCC------------cHHhHHH
Q 011362 257 GAL-SLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNG---------VAA------------DTWTYRT 314 (487)
Q Consensus 257 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------~~~------------~~~~~~~ 314 (487)
+|. .+|++.... .+.+...+...+......|++++|..+|+.+.+.. ..| ...+|..
T Consensus 361 ~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~ 439 (679)
T 4e6h_A 361 TVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCV 439 (679)
T ss_dssp THHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHH
Confidence 997 999999874 33456667778888889999999999999987631 012 1235777
Q ss_pred HHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhc-CCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC
Q 011362 315 FIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKS-GRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393 (487)
Q Consensus 315 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (487)
.+....+.|..+.|..+|..+++.........|...+..-.+. ++++.|..+|+..++. .+.+...|..++......|
T Consensus 440 y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 440 YMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCC
Confidence 7777778899999999999998761133344454444333344 4599999999998876 3456677778888888899
Q ss_pred CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 011362 394 QMDKARDLFLDMEENAVVP--NVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAK 461 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 461 (487)
+.+.|..+|++.+.....+ ....|..++..-...|+.+.+.++.+++.+.- |+..-...+.+-|.-
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKYKV 586 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHTCB
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHhcC
Confidence 9999999999999864322 34678888888889999999999999999853 555555555555533
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-16 Score=134.03 Aligned_cols=223 Identities=10% Similarity=0.032 Sum_probs=124.3
Q ss_pred HHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc--cC----hhhHHH
Q 011362 206 TYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK--PD----VVIHNT 279 (487)
Q Consensus 206 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 279 (487)
.+..+...+...|++++|...++++.+.. .+...+..+..++...|++++|...+.+....... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444444445555555555555544443 34444445555555555555555555544432111 01 244455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC
Q 011362 280 LFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGR 359 (487)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 359 (487)
+...+...|++++|...+.++.+. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 555555555555555555555553 2222 23444455666666666665543 3445556666666666667
Q ss_pred HHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 360 LEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHK 439 (487)
Q Consensus 360 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 439 (487)
+++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...|..+..++...|++++|...+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 777766666665542 3345666667777777777777777777776643 22456666677777777777777777777
Q ss_pred HHh
Q 011362 440 MKE 442 (487)
Q Consensus 440 ~~~ 442 (487)
+.+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-16 Score=137.48 Aligned_cols=219 Identities=13% Similarity=-0.039 Sum_probs=113.8
Q ss_pred CccchHHHHHHHHHhCCC---CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011362 2 GRVSHGFVVLGRILKSCF---TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
|++++|+..|+.+++... +.+..++..++..+...|++++|+..|+++.+.. +.+..++..++..+...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHH
Confidence 455666666666665421 1134555666666666666666666666666553 334555666666666666666666
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
..|+++.+.. |.+...+..++.++...|++++|...|+++.+.. |+.......+..+...|++++|...+.
T Consensus 98 ~~~~~al~~~-------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 98 EAFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLK 168 (275)
T ss_dssp HHHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHhcC-------ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHH
Confidence 6666666543 3445566666666666666666666666665542 232233333333444566666666665
Q ss_pred HHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHcCCCHhHHHHHHHHHHH
Q 011362 159 EMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRP---DAFTYNTLLDGFCLTGRVNHAKELFVSMES 232 (487)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 232 (487)
+..... +++...+ .++..+...++.++|...+.......... +..++..+...+...|++++|...|+++..
T Consensus 169 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 169 QHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 554432 1222222 24444555555555555555544321100 123344444444444555555554444443
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=2.6e-15 Score=133.96 Aligned_cols=233 Identities=12% Similarity=0.054 Sum_probs=188.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH-TIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
..+|..+...+...|++++|+..++++++.. +.+..+|..+..++...|+ +++|+..|+++.+.+ |.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-------P~~~~a 168 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-------CCCHHH
Confidence 5678888888999999999999999998875 5567788899999999996 999999999999876 667889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
|..+..++...|++++|+..|+++++.. +-+..+|..+..++...|++++|+..++++++..+. +...|+.+..++..
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 347888999999999999999999999999887544 67788888888888
Q ss_pred -CCChHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHcCC--CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC
Q 011362 182 -NGKMDEA-----SRLLDLMIQHGVRPDAFTYNTLLDGFCLTG--RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNK 253 (487)
Q Consensus 182 -~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 253 (487)
.|..++| +..++..+.... -+...|..+...+...| ++++|.+.+.++ +. .+.+...+..++.+|.+.|
T Consensus 247 l~~~~~eA~~~~el~~~~~Al~l~P-~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 247 TTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHH
T ss_pred hcCcchHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHh
Confidence 5655777 477877777533 26678888888888877 578888888777 33 2556777888888887763
Q ss_pred ---------CHhHHHHHHHHH-HHC
Q 011362 254 ---------EIEGALSLYSEM-LSK 268 (487)
Q Consensus 254 ---------~~~~a~~~~~~~-~~~ 268 (487)
..++|+++++++ .+.
T Consensus 324 ~~~~~~~~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 324 ENQCDNKEDILNKALELCEILAKEK 348 (382)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHHHHHHh
Confidence 247888888887 554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-15 Score=131.19 Aligned_cols=250 Identities=10% Similarity=-0.023 Sum_probs=177.8
Q ss_pred HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccC--hhhHHHHHH
Q 011362 205 FTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPD--VVIHNTLFV 282 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 282 (487)
..+......+...|++++|...++++.+.. +.+...+..+..+|...|++++|+..++++......++ ...+..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 344556667777788888888888777664 44555777777788888888888888888777321111 223677778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH
Q 011362 283 GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI 362 (487)
Q Consensus 283 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 362 (487)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887763 3455778888888888999999999998888764 5567777777734444558999
Q ss_pred HHHHHHhccCCCCCCcHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCChhH
Q 011362 363 ALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ---MDKARDLFLDMEENA-VVPN------VITFDMLIRGFIRINEPSK 432 (487)
Q Consensus 363 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 432 (487)
|...|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..+|..+...|...|++++
T Consensus 161 A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 161 ADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 999998887753 3446777778888888787 888888888886531 1123 2567778888889999999
Q ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 011362 433 VIELLHKMKEINVMPDASIVSIVVDLL 459 (487)
Q Consensus 433 a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (487)
|.+.++++.+.. +.+......+....
T Consensus 240 A~~~~~~al~~~-p~~~~a~~~l~~~~ 265 (272)
T 3u4t_A 240 ADAAWKNILALD-PTNKKAIDGLKMKL 265 (272)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHC---
T ss_pred HHHHHHHHHhcC-ccHHHHHHHhhhhh
Confidence 999999998864 33445555444433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-15 Score=134.41 Aligned_cols=236 Identities=11% Similarity=0.014 Sum_probs=198.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESR-IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+..|+.++... |.+..+|+.+..++...|+ +++|+..|+++++.. +.+..+|..+..++...|++++|+.
T Consensus 110 ~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~~~g~~~eAl~ 187 (382)
T 2h6f_A 110 DERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVEWLRDPSQELE 187 (382)
T ss_dssp TCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHH
T ss_pred CCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHccCHHHHHH
Confidence 478999999999999996 4579999999999999997 999999999999986 5678899999999999999999999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh-cCChhhH-----
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY-AKDWNEA----- 153 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a----- 153 (487)
.|+++.+.+ |.+...|..+..++...|++++|+..|+++++.. +-+...|+.+..++.. .|..++|
T Consensus 188 ~~~kal~ld-------P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 188 FIADILNQD-------AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp HHHHHHHHC-------TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHhC-------ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 999999987 7788999999999999999999999999999875 3478899999999998 6665887
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---------CHhH
Q 011362 154 KRLFIEMMDQGVQPNVVTFNVIMDELCKNG--KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG---------RVNH 222 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------~~~~ 222 (487)
+..+++.+...+. +...|..+...+...| ++++|+..+..+ +. .+.+...+..++.++...| ..++
T Consensus 260 l~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 5889998886433 6678888888888888 689999999888 33 3446788888999888864 2589
Q ss_pred HHHHHHHH-HHcCCCCCHhhHHHHHHHHH
Q 011362 223 AKELFVSM-ESMGCKHTVFSYSILINGYC 250 (487)
Q Consensus 223 a~~~~~~~-~~~~~~~~~~~~~~l~~~~~ 250 (487)
|.++++++ .+.+ +.....|..+...+.
T Consensus 337 A~~~~~~l~~~~D-P~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 337 ALELCEILAKEKD-TIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHTTC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-chhHHHHHHHHHHHH
Confidence 99999998 6653 444556666655543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.6e-14 Score=122.84 Aligned_cols=225 Identities=11% Similarity=-0.011 Sum_probs=178.8
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCccccc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR----TSHTIVALNLFEEMANGNGEFGVVCE 96 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 96 (487)
.++.++..+...+...|++++|+..|++..+ +.+..++..+...+.. .+++++|+..|++..+.+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-------- 72 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN-------- 72 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--------
Confidence 4677788888888899999999999998887 3455677788888888 899999999999888753
Q ss_pred cchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCC
Q 011362 97 PNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQGVQPN 168 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 168 (487)
+...+..+...|.. .+++++|++.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +
T Consensus 73 -~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 145 (273)
T 1ouv_A 73 -YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D 145 (273)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred -CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c
Confidence 56788888888888 889999999998888764 67788888888888 888899999888888765 4
Q ss_pred hhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHh
Q 011362 169 VVTFNVIMDELCK----NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMESMGCKHTVF 240 (487)
Q Consensus 169 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 240 (487)
...+..+...|.. .+++++|...|+...+.+ +...+..+...+.. .+++++|...+++..+.+ +..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 5666777777777 888888888888887763 45667777777877 888888888888887764 255
Q ss_pred hHHHHHHHHHc----cCCHhHHHHHHHHHHHCC
Q 011362 241 SYSILINGYCK----NKEIEGALSLYSEMLSKG 269 (487)
Q Consensus 241 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 269 (487)
.+..+..+|.. .+++++|...+++..+.+
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 67777777777 788888888888877654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.9e-15 Score=128.82 Aligned_cols=197 Identities=11% Similarity=0.084 Sum_probs=101.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--HhhHH
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPN--VVTYT 138 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 138 (487)
+......+...|++++|+..|+++.+.. |.+...+..+..++...|++++|++.++++.+....++ ...|.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 78 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-------YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTT-------CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHH
Confidence 3444555555566666666666555543 33444555555556666666666666655555211111 12255
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
.+..++...|++++|+..|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...+
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~ 156 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNK 156 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHH
Confidence 5555566666666666666665554222 34455555556666666666666665555441 224444444442233334
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCC---HhHHHHHHHHHHH
Q 011362 219 RVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKE---IEGALSLYSEMLS 267 (487)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~ 267 (487)
++++|...++++.+.. +.+...+..+..++...++ +++|...++++.+
T Consensus 157 ~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 157 EYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 6666666666655543 3334445555555555555 5555555555443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.72 E-value=8.6e-15 Score=124.29 Aligned_cols=201 Identities=13% Similarity=0.042 Sum_probs=110.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...|..++..+...|++++|+..|+++.+.. +.+..++..+...+...|++++|.+.++++.+.. +.+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 108 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-------SRNARVL 108 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------cCcHHHH
Confidence 3445555666666666666666666665543 3345555556666666666666666666665543 3345555
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
..++..+...|++++|.+.++++...+..| +...+..+..++...|++++|...++++.+... .+...+..+...+..
T Consensus 109 ~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 109 NNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHH
Confidence 666666666666666666666655521122 344555555555666666666666666555422 134445555555555
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
.|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++.+.+.
T Consensus 188 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 555555555555555432 224444555555555555555555555555544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1e-14 Score=121.35 Aligned_cols=205 Identities=8% Similarity=-0.079 Sum_probs=153.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+.+..++..++..+...|++++|+..|+++.+.. +.+...+..++..+...|++++|.+.++++.+.. +.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~ 76 (225)
T 2vq2_A 5 NQVSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-------PDSA 76 (225)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCh
Confidence 3456778888888888899999999888888764 4557778888888888888888888888888765 5567
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 100 VTYTTIIDGLCKE-GFVDKAKELLLQMKDKNIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 100 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
..+..++..+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+... .+...+..+..
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~ 155 (225)
T 2vq2_A 77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELAR 155 (225)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHH
Confidence 7888888888888 88888888888887732222 356777788888888888888888888877532 24666777777
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
.+...|++++|..+++.+.+.....+...+..+...+...|+.+.+..+++.+...
T Consensus 156 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 156 TKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 77788888888888877766533135666666666777777777777777776654
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-15 Score=128.51 Aligned_cols=202 Identities=12% Similarity=0.047 Sum_probs=130.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
....|..+...+...|++++|+..|+++.+.. +.+...+..++..+...|++++|+..++++.+.. +.+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 93 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-------SSAATA 93 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CcchHH
Confidence 35566777777888888888888888887754 4456677777788888888888888888877754 456677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
+..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 94 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 94 YYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNE-NDTEARFQFGMCLAN 171 (243)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHH
Confidence 7777888888888888888888777653 33566777777777778888888888877776532 255566667777777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 182 NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
.|++++|...++.+.+.. +.+..++..+..++...|++++|...++++.+..
T Consensus 172 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 777777777777766653 2345666667777777777777777777766653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-17 Score=157.12 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=101.6
Q ss_pred cHHhHHHHHHHHHhCCCHhHHHHHHHHHH---HcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHH
Q 011362 308 DTWTYRTFIDGLCKNGYIVEAVELFHTLR---ILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSI 384 (487)
Q Consensus 308 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 384 (487)
-..+|+.++.+|++.|++++|..+|..|. ..|+.||+.+||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777776654 345677777777777777777777777777777777777777777777
Q ss_pred HHHHHHccCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC------HHHHHHHHH
Q 011362 385 MIGGLCNDGQM-DKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPD------ASIVSIVVD 457 (487)
Q Consensus 385 l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~ 457 (487)
++.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.+. .+++.++++ .-++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 77777777763 56777777777777777777777776544443 344444444 3334443 333444555
Q ss_pred HHHhccc
Q 011362 458 LLAKNEI 464 (487)
Q Consensus 458 ~~~~~g~ 464 (487)
.+.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 5555543
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.70 E-value=7.8e-14 Score=119.85 Aligned_cols=224 Identities=13% Similarity=-0.044 Sum_probs=141.3
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHc----cCCHhHHHHHHHHHHHCCCccChhhHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCK----NKEIEGALSLYSEMLSKGIKPDVVIHN 278 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 278 (487)
+...+..+...+...|++++|...|++..+. .+...+..+...|.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3444555555555666666666666665552 234455555556665 666666666666665543 445555
Q ss_pred HHHHHHHh----cCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh----CCCHhHHHHHHHHHHHcCCCCChHhHHHH
Q 011362 279 TLFVGLFE----IHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCK----NGYIVEAVELFHTLRILKCEFDIRAYNSL 350 (487)
Q Consensus 279 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 350 (487)
.+...+.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 56666666 666666666666666543 45556666666666 677777777777766654 44555666
Q ss_pred HHHHHh----cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011362 351 IDGLCK----SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN----DGQMDKARDLFLDMEENAVVPNVITFDMLIR 422 (487)
Q Consensus 351 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 422 (487)
...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 666666 677777777777766543 34566667777777 777777777777777653 2555666667
Q ss_pred HHHh----cCChhHHHHHHHHHHhcC
Q 011362 423 GFIR----INEPSKVIELLHKMKEIN 444 (487)
Q Consensus 423 ~~~~----~g~~~~a~~~~~~~~~~~ 444 (487)
.|.. .+++++|.+.+++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7776 777777777777777755
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-17 Score=158.12 Aligned_cols=125 Identities=9% Similarity=0.160 Sum_probs=82.8
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHhcc---CCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011362 341 EFDIRAYNSLIDGLCKSGRLEIALELFRSLP---CGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITF 417 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 417 (487)
.....+|+++|.+|++.|++++|..+|.+|. ..|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445567777777777777777777765543 2356677777777777777777777777777777777777777777
Q ss_pred HHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 418 DMLIRGFIRINEP-SKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 418 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.+|.++++.|+. ++|.+++++|.+.|+.||..+|+.++....+.+.+
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL 252 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVL 252 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHH
Confidence 7777777776653 56667777777777777777776555555555444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-15 Score=129.74 Aligned_cols=248 Identities=9% Similarity=-0.016 Sum_probs=158.1
Q ss_pred HhcCCHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 34 CAESRIMEAAALFTKLRVFGC---EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
...|++++|+..|+++.+... +.+..++..++..+...|++++|+..|+++.+.. |.+...+..++.++.
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-------CCcHHHHHHHHHHHH
Confidence 345778888888888877532 1234567777888888888888888888888765 556778888888888
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHH
Q 011362 111 KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 111 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 190 (487)
..|++++|...|+++.+.. +.+..++..+..++...|++++|...++++.+.. |+.......+..+...|++++|..
T Consensus 89 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHH
Confidence 8888888888888887753 3356777778888888888888888888887753 333333334444556677777777
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC---CCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 191 LLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCK---HTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
.++...... +++...+ .++..+...++.++|...+......... .+...+..+..+|...|++++|...++++..
T Consensus 166 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 776666542 2233333 3555566666777777777666543210 1135566666666677777777777776665
Q ss_pred CCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 011362 268 KGIKPDVVIHNTLFVGLFEIHQVERAFKLF 297 (487)
Q Consensus 268 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 297 (487)
.. |+. +.....++...|++++|...+
T Consensus 244 ~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 NN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred CC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 42 211 222233445555555555444
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-14 Score=120.73 Aligned_cols=163 Identities=12% Similarity=-0.027 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC-CCChHhHHHHHHHHH
Q 011362 277 HNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC-EFDIRAYNSLIDGLC 355 (487)
Q Consensus 277 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~ 355 (487)
+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++...+. +.+...+..++..+.
T Consensus 74 ~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~ 152 (252)
T 2ho1_A 74 HAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL 152 (252)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence 3333333444444444444444433321 12333344444444444444444444444443111 122334444444444
Q ss_pred hcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011362 356 KSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIE 435 (487)
Q Consensus 356 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (487)
..|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|.+
T Consensus 153 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 153 QMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHH
Confidence 4555555555554444321 2234444455555555555555555555554432 1234444444555555555555555
Q ss_pred HHHHHHh
Q 011362 436 LLHKMKE 442 (487)
Q Consensus 436 ~~~~~~~ 442 (487)
.++++.+
T Consensus 231 ~~~~~~~ 237 (252)
T 2ho1_A 231 YGLQLKR 237 (252)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.2e-15 Score=124.38 Aligned_cols=197 Identities=14% Similarity=0.089 Sum_probs=166.8
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.+++.. +.+..++..++..+...|++++|+..++++.+.. +.+..++..+...+...|++++|.+.
T Consensus 36 ~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 113 (243)
T 2q7f_A 36 FGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVKEMYKEAKDM 113 (243)
T ss_dssp ------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHhccHHHHHHH
Confidence 478999999999999975 5578899999999999999999999999999875 55778899999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 114 ~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 114 FEKALRAG-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHT-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999876 5678899999999999999999999999998763 347888999999999999999999999999
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNT 209 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 209 (487)
.+... .+...+..+..++...|++++|...++.+.+.... +...+..
T Consensus 186 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~ 232 (243)
T 2q7f_A 186 TEQDP-GHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD-HMLALHA 232 (243)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc-hHHHHHH
Confidence 88743 36778889999999999999999999999886332 4444443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=4.9e-15 Score=135.45 Aligned_cols=279 Identities=14% Similarity=0.076 Sum_probs=174.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccc
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVC 95 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 95 (487)
......+......+...|++++|+..|+++.+.. +.+ ..++..+...+...|++++|...++++.......+. .
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 83 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-Q 83 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-H
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-c
Confidence 3456677888999999999999999999999874 333 356788899999999999999999987553210000 1
Q ss_pred ccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CC-CCHhhHHHHHHHHHhcCC--------------------h
Q 011362 96 EPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN----IK-PNVVTYTSVIRGFCYAKD--------------------W 150 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~~~--------------------~ 150 (487)
+....++..+...+...|++++|...+++..... .+ ....++..+...+...|+ +
T Consensus 84 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~ 163 (406)
T 3sf4_A 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDAL 163 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHH
Confidence 2335678888999999999999999998876531 00 113467788888888888 8
Q ss_pred hhHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHcCCCH
Q 011362 151 NEAKRLFIEMMDQ----GVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV-RPD----AFTYNTLLDGFCLTGRV 220 (487)
Q Consensus 151 ~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~ 220 (487)
++|...+++.... +.. ....++..+...+...|++++|...+++..+... .++ ..++..+...+...|++
T Consensus 164 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 243 (406)
T 3sf4_A 164 QAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEF 243 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCh
Confidence 8888887776542 111 1123456666677777777777777766654210 011 22555666666666677
Q ss_pred hHHHHHHHHHHHcC----CCC-CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc-----cChhhHHHHHHHHHhcCCH
Q 011362 221 NHAKELFVSMESMG----CKH-TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-----PDVVIHNTLFVGLFEIHQV 290 (487)
Q Consensus 221 ~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~ 290 (487)
++|...+++..... .++ ...++..+...|...|++++|...+++....... ....++..+...+...|++
T Consensus 244 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 323 (406)
T 3sf4_A 244 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNH 323 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 66666666654321 000 0334455555666666666666666555432100 0022344444444455555
Q ss_pred HHHHHHHHHH
Q 011362 291 ERAFKLFDEM 300 (487)
Q Consensus 291 ~~a~~~~~~~ 300 (487)
++|...+++.
T Consensus 324 ~~A~~~~~~a 333 (406)
T 3sf4_A 324 DQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.1e-14 Score=115.92 Aligned_cols=199 Identities=13% Similarity=0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhH
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTY 137 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 137 (487)
...+..++..+...|++++|++.|+++.+.. +.+...+..++.++...|++++|.+.++++.+.. +.+..++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~ 79 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD-------PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEIN 79 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHH
Confidence 3445555556666666666666666655543 3445555556666666666666666666655442 2244555
Q ss_pred HHHHHHHHhc-CChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011362 138 TSVIRGFCYA-KDWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC 215 (487)
Q Consensus 138 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (487)
..+...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++.+.+... .+...+..+...+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~ 158 (225)
T 2vq2_A 80 NNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKM 158 (225)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHH
Confidence 5555555555 66666666665555421111 133444455555555555555555555544321 13444555555555
Q ss_pred cCCCHhHHHHHHHHHHHcCCC-CCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 216 LTGRVNHAKELFVSMESMGCK-HTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
..|++++|...++.+.+.. + .+...+..+...+...|+.+.+..+++.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 5555555555555554432 2 334444444444455555555555555444
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.3e-15 Score=134.21 Aligned_cols=241 Identities=13% Similarity=0.049 Sum_probs=154.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV----FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
..+..+...+...|++++|+..|+++.+.. +.+. .++..+...+...|++++|+..++++.+.....+. .+...
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~ 126 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-RLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC-chHHH
Confidence 345567788899999999999999999874 3333 46788889999999999999999987764100000 13456
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC----C-CCCCHhhHHHHHHHHHhcCC-----------------hhhHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDK----N-IKPNVVTYTSVIRGFCYAKD-----------------WNEAKRLF 157 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~ 157 (487)
..+..+...|...|++++|...+++.... + .+....++..+...|...|+ +++|+..+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 77888999999999999999999887653 1 11234467778888888888 88888877
Q ss_pred HHHHHc----CC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHcCCCHhHHHHHH
Q 011362 158 IEMMDQ----GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR-PD----AFTYNTLLDGFCLTGRVNHAKELF 227 (487)
Q Consensus 158 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~ 227 (487)
++..+. +. ......+..+...+...|++++|...+++..+.... .+ ..++..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 776542 11 111235556666777777777777777666543100 01 124555556666666666666666
Q ss_pred HHHHHcCCC-----CCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 228 VSMESMGCK-----HTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 228 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
++....... ....++..+..+|...|++++|...+++..
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 330 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555432100 012334445555555555555555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-12 Score=119.67 Aligned_cols=410 Identities=10% Similarity=0.021 Sum_probs=279.6
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHccCCh---
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESR---IMEAAALFTKLRVFG-CEPDVFTYTTLVNGLCRTSHT--- 74 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--- 74 (487)
|.++.|+.+|++++.. +|.....|...+..-.+.|+ ++.+..+|++.+... .+|++..|...+.-..+.++.
T Consensus 80 ~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~ 158 (679)
T 4e6h_A 80 KQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITG 158 (679)
T ss_dssp TCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTT
T ss_pred CcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccc
Confidence 5778899999999998 57789999999999999999 999999999999874 138888888777655555443
Q ss_pred -----HHHHHHHHHHHhCCCCCcccc--ccchHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCHhhHH
Q 011362 75 -----IVALNLFEEMANGNGEFGVVC--EPNTVTYTTIIDGLCK---------EGFVDKAKELLLQMKDKNIKPNVVTYT 138 (487)
Q Consensus 75 -----~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~ 138 (487)
+...++|+.+...-+ . +.+...|...+..... .++++.+..+|++++......-..+|.
T Consensus 159 ~~~~r~~vr~~FErAl~~vG-----~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~ 233 (679)
T 4e6h_A 159 GEEARNIVIQAFQVVVDKCA-----IFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQ 233 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-----TTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-----cccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHH
Confidence 334578887665321 2 2345688888876543 345788999999988631111123333
Q ss_pred HHHHHHHh-------------cCChhhHHHHHHHHHHc--CCC---CC--------------------hhhHHHHHHHHH
Q 011362 139 SVIRGFCY-------------AKDWNEAKRLFIEMMDQ--GVQ---PN--------------------VVTFNVIMDELC 180 (487)
Q Consensus 139 ~l~~~~~~-------------~~~~~~a~~~~~~~~~~--~~~---~~--------------------~~~~~~l~~~~~ 180 (487)
.....-.. ..+++.|...+.++... ++. |. ...|...+..--
T Consensus 234 ~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk 313 (679)
T 4e6h_A 234 RYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWES 313 (679)
T ss_dssp HHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHH
Confidence 22211111 11233444555443221 111 10 122333333222
Q ss_pred hCC-------ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHH-HHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 011362 181 KNG-------KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK-ELFVSMESMGCKHTVFSYSILINGYCKN 252 (487)
Q Consensus 181 ~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (487)
..+ ....+..+|++++.. ++.+...|...+..+...|+.++|. .+|+..... +|.+...+..++....+.
T Consensus 314 ~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~ 391 (679)
T 4e6h_A 314 DNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELN 391 (679)
T ss_dssp TCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred hCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 221 123456778888776 4457888998888888999999997 999999875 366777778888889999
Q ss_pred CCHhHHHHHHHHHHHCCC---------ccC------------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHh
Q 011362 253 KEIEGALSLYSEMLSKGI---------KPD------------VVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWT 311 (487)
Q Consensus 253 ~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (487)
|+++.|.++|+.+..... .|+ ..+|...+....+.++.+.|..+|..+.+.........
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l 471 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI 471 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH
Confidence 999999999999886310 121 23677777777888999999999999987611222334
Q ss_pred HHHHHHHHHhC-CCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCC--cHHHHHHHHHH
Q 011362 312 YRTFIDGLCKN-GYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVP--NVVTYSIMIGG 388 (487)
Q Consensus 312 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 388 (487)
|...+..-.+. ++.+.|..+|+...+. .+.++..+...+......|+.+.|..+|++.......+ ....|...+..
T Consensus 472 yi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f 550 (679)
T 4e6h_A 472 YLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF 550 (679)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 44444333344 4589999999999876 36677778888888888999999999999998864211 34678888888
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011362 389 LCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422 (487)
Q Consensus 389 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 422 (487)
-...|+.+.+..+.+++.+.- |+......++.
T Consensus 551 E~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ 582 (679)
T 4e6h_A 551 ESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTN 582 (679)
T ss_dssp HHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHH
Confidence 889999999999999998863 44333334443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=132.97 Aligned_cols=305 Identities=14% Similarity=0.062 Sum_probs=169.4
Q ss_pred CCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-
Q 011362 132 PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN----VVTFNVIMDELCKNGKMDEASRLLDLMIQH----GVRP- 202 (487)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~- 202 (487)
.....+......+...|++++|...|+++.+.... + ...+..+...+...|++++|...++.+... +..|
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34555666777777778888888888777765322 2 235566667777777777777777765432 1111
Q ss_pred CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHccCC-------------HhHHHHHHHH
Q 011362 203 DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC-----KHTVFSYSILINGYCKNKE-------------IEGALSLYSE 264 (487)
Q Consensus 203 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~-------------~~~a~~~~~~ 264 (487)
...++..+...+...|++++|...+++..+... .....++..+...|...|+ ++++...
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~--- 162 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDA--- 162 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHH---
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHH---
Confidence 134555566666666666666666666543210 0012244444555555555 0000000
Q ss_pred HHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 265 MLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN----GV-AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
+++|...+.+..+. +. +....++..+...+...|++++|...+++.....
T Consensus 163 -------------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 163 -------------------------LQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp -------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44444444333221 10 0112345555666666666666666666655321
Q ss_pred CC-C----ChHhHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCC-cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-
Q 011362 340 CE-F----DIRAYNSLIDGLCKSGRLEIALELFRSLPCG----VLVP-NVVTYSIMIGGLCNDGQMDKARDLFLDMEEN- 408 (487)
Q Consensus 340 ~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 408 (487)
.. + ...++..+...|...|++++|...+++.... +..+ ...++..+...+...|++++|...++++.+.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 00 1 1235666666777777777777777665431 1011 1346667777777788888888877776542
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCC-CHHHHHHHHHHHHhcccc
Q 011362 409 ---AVVP-NVITFDMLIRGFIRINEPSKVIELLHKMKEI----NVMP-DASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 409 ---~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~ 465 (487)
+..+ ...++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 1111 1445667777777888888888887776642 1111 234556666677777766
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.1e-15 Score=134.65 Aligned_cols=266 Identities=12% Similarity=0.009 Sum_probs=201.3
Q ss_pred CCccchHHHHHHHHHhCCCCCCH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc----C-CCCCHHHHHHHHHHHHcc
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDA----VTFTSLIKGLCAESRIMEAAALFTKLRVF----G-CEPDVFTYTTLVNGLCRT 71 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~ 71 (487)
.|++++|+..|+++++.++ .+. .+|..+...|...|++++|+..++++.+. + .+....++..+...+...
T Consensus 61 ~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 139 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGT-EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVM 139 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hCcHHHHHHHHHHHHHhcc-cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHC
Confidence 4899999999999999853 344 57888999999999999999999998764 1 122345688899999999
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC-----------------hhHHHHHHHHHHhC----CC
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF-----------------VDKAKELLLQMKDK----NI 130 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~~----~~ 130 (487)
|++++|...++++.+.....+. .+....++..+...+...|+ +++|.+.+++..+. +.
T Consensus 140 g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLGD-RLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999987764210000 13345688889999999999 99999998886542 11
Q ss_pred -CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC---
Q 011362 131 -KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-PN----VVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR--- 201 (487)
Q Consensus 131 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--- 201 (487)
+....++..+...+...|++++|+..+++..+.... ++ ...+..+...+...|++++|...++........
T Consensus 219 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 298 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGE 298 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC
Confidence 112347888999999999999999999998764211 11 226778889999999999999999887754211
Q ss_pred --CCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-----CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 202 --PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGC-----KHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 202 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
....++..+...+...|++++|...+++...... .....++..+..+|...|++++|...+++....
T Consensus 299 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 299 REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 1256788889999999999999999998765310 112346677778888888888888888877663
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.1e-13 Score=119.24 Aligned_cols=219 Identities=9% Similarity=0.042 Sum_probs=132.3
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCA-------ESRI-------MEAAALFTKLRVFGCEPDVFTYTTLVNGLCR 70 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 70 (487)
++|+.+|++++... |.++..|..++..+.. .|++ ++|+.+|+++++.-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777888887764 4567777777777653 4665 6777777777762113345567777777777
Q ss_pred cCChHHHHHHHHHHHhCCCCCccccccchH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH-hcC
Q 011362 71 TSHTIVALNLFEEMANGNGEFGVVCEPNTV-TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC-YAK 148 (487)
Q Consensus 71 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~ 148 (487)
.|++++|..+|+++.+.. |.+.. .|..++..+.+.|++++|..+|++..+.. +++...|...+.... ..|
T Consensus 112 ~~~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~ 183 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIE-------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSK 183 (308)
T ss_dssp TTCHHHHHHHHHHHHTSS-------SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHHhcc-------ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcC
Confidence 777777777777777643 23333 67777777777777777777777776653 223344433333221 246
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHcCCCHhHHHH
Q 011362 149 DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHG-VRP--DAFTYNTLLDGFCLTGRVNHAKE 225 (487)
Q Consensus 149 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~ 225 (487)
++++|..+|++..+..+ .+...|..++..+.+.|++++|..+|+...... ..| ....|..++......|+.+.|..
T Consensus 184 ~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~ 262 (308)
T 2ond_A 184 DKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262 (308)
T ss_dssp CHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666655422 245555556666666666666666666666542 232 34455555555555666666666
Q ss_pred HHHHHHHc
Q 011362 226 LFVSMESM 233 (487)
Q Consensus 226 ~~~~~~~~ 233 (487)
+++++.+.
T Consensus 263 ~~~~a~~~ 270 (308)
T 2ond_A 263 VEKRRFTA 270 (308)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665544
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-14 Score=127.81 Aligned_cols=242 Identities=14% Similarity=0.096 Sum_probs=150.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
...+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|++++|.+.++++.......+. .+..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD-QLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-HHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc-cHHH
Confidence 3445667888899999999999999999874 333 356778889999999999999999887653100000 1233
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----HhhHHHHHHHHHhcCC--------------------hhhH
Q 011362 99 TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNI-KPN----VVTYTSVIRGFCYAKD--------------------WNEA 153 (487)
Q Consensus 99 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~--------------------~~~a 153 (487)
...+..+...+...|++++|...+++..+... .++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 56788889999999999999999988765310 011 3367778888888888 7888
Q ss_pred HHHHHHHHHc----CCC-CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHcCCCHhHH
Q 011362 154 KRLFIEMMDQ----GVQ-PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGV-----RPDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 154 ~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a 223 (487)
...+++.... +.. .....+..+...+...|++++|...++...+... .....++..+...+...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 8777766432 111 1123455566666677777777777766553210 00122445555555566666666
Q ss_pred HHHHHHHHHcCCC-C----CHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 224 KELFVSMESMGCK-H----TVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 224 ~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
...+++....... . ...++..+...+...|++++|...+++..
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 290 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 6655554432100 0 02334444445555555555555554443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-13 Score=110.32 Aligned_cols=167 Identities=10% Similarity=0.020 Sum_probs=140.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
++.+|..+...|...|++++|++.|+++++.. +.+..++..+..++...|++++|+..+..+.... +.+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~ 75 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-------TTSAEA 75 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------chhHHH
Confidence 67788889999999999999999999998875 5577788889999999999999999999888765 566778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
+..+...+...++++.+.+.+.+..... +.+...+..+..++.+.|++++|++.|++..+..+. +...+..+..+|.+
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHH
Confidence 8888888889999999999998887763 346778888888999999999999999988876433 66778888888889
Q ss_pred CCChHHHHHHHHHHHHC
Q 011362 182 NGKMDEASRLLDLMIQH 198 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~~ 198 (487)
.|++++|+..|++.++.
T Consensus 154 ~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 99999999999888775
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-13 Score=122.51 Aligned_cols=227 Identities=10% Similarity=-0.049 Sum_probs=138.9
Q ss_pred HHhcCCHHHHHHHHHHHHhc--CCCCCHH--HHHHHHHH--HHccCChHHHH-----------HHHHHHHhCCCCCcccc
Q 011362 33 LCAESRIMEAAALFTKLRVF--GCEPDVF--TYTTLVNG--LCRTSHTIVAL-----------NLFEEMANGNGEFGVVC 95 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~--~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~~~~~~~~~ 95 (487)
+.+.+++++|..+++++.+. ....+.. .|..++.. ....+..+.+. +.++.+....
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~------- 94 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ------- 94 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT-------
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC-------
Confidence 46789999999999998664 2223333 33333322 22233344444 6666665422
Q ss_pred ccchHH------HHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 96 EPNTVT------YTTIIDGLCKEGFVDKAKELLLQMKDK----NIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 96 ~~~~~~------~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
.+... +...+..+...|++++|...+++..+. +.++ ...++..+..+|...|++++|...+.+..+..
T Consensus 95 -~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 173 (383)
T 3ulq_A 95 -ARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY 173 (383)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 22222 223666778889999999999888664 1111 24567788888888899998888888876531
Q ss_pred CC-C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 165 VQ-P-----NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR-P----DAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 165 ~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
.. + ...++..+..+|...|++++|...+++..+.... + ...++..+...+...|++++|...+++..+.
T Consensus 174 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~ 253 (383)
T 3ulq_A 174 KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAV 253 (383)
T ss_dssp HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 11 1 1235666777777888888888877776543100 1 1235666667777777777777777666542
Q ss_pred ----CC-CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 234 ----GC-KHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 234 ----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
+. +....++..+..+|.+.|++++|...+++...
T Consensus 254 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 292 (383)
T 3ulq_A 254 FEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA 292 (383)
T ss_dssp HHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22 33344566666666666777766666666554
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=128.42 Aligned_cols=266 Identities=11% Similarity=0.028 Sum_probs=197.8
Q ss_pred CCccchHHHHHHHHHhCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHcc
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD----AVTFTSLIKGLCAESRIMEAAALFTKLRVF----GCE-PDVFTYTTLVNGLCRT 71 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~ 71 (487)
.|++++|+..|+.+++.. +.+ ..++..+...+...|++++|++.++++... +.. ....++..+...+...
T Consensus 18 ~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 96 (338)
T 3ro2_A 18 SGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVL 96 (338)
T ss_dssp TTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHc
Confidence 489999999999999985 334 467888999999999999999999987654 111 2245678889999999
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC--------------------hhHHHHHHHHHHhC---
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF--------------------VDKAKELLLQMKDK--- 128 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~~--- 128 (487)
|++++|...+++..+..+..+. .+....++..+...+...|+ +++|.+.+++....
T Consensus 97 g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELND-KVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999987764311000 11124578889999999999 99999998876542
Q ss_pred -CC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 011362 129 -NI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-P----NVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 129 -~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
+. +....++..+...+...|++++|...+++..+.... + ....+..+...+...|++++|...++........
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 11 112446788899999999999999999988654111 1 1236778888999999999999999887653111
Q ss_pred -CC----HHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC----C-CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 202 -PD----AFTYNTLLDGFCLTGRVNHAKELFVSMESMG----C-KHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 202 -~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.+ ..++..+...+...|++++|...+++..... . .....++..+...|...|++++|...+++....
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 5577888899999999999999998876531 0 111335667777888888888888888877664
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-13 Score=121.57 Aligned_cols=296 Identities=11% Similarity=-0.000 Sum_probs=156.5
Q ss_pred HHhcCChhHHHHHHHHHHhC--CCCCC--HhhHHHHHHH--HHhcCChhhHH-----------HHHHHHHHcCCCCCh--
Q 011362 109 LCKEGFVDKAKELLLQMKDK--NIKPN--VVTYTSVIRG--FCYAKDWNEAK-----------RLFIEMMDQGVQPNV-- 169 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~~~~-- 169 (487)
+.+.+++++|..+++++.+. .+..+ ...|..++.. ....++++.+. +.++.+.......+.
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 45689999999999988653 22223 3333333322 12233344444 556555432111010
Q ss_pred --hhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC--C----C
Q 011362 170 --VTFNVIMDELCKNGKMDEASRLLDLMIQH----GVRP-DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG--C----K 236 (487)
Q Consensus 170 --~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~ 236 (487)
..+......+...|++++|...++...+. +..+ ...++..+...+...|++++|...+.+..+.. . +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 01112445667788888888888887654 1111 23566777777788888888888777765431 0 1
Q ss_pred CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc-c----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 011362 237 HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK-P----DVVIHNTLFVGLFEIHQVERAFKLFDEMQRN----GV-A 306 (487)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~ 306 (487)
....++..+..+|...|++++|...+.+....... + ...++..+...|...|++++|...+.+..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 11345666667777777777777777766542110 0 1124555566666666666666666665541 11 2
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC----CCCChHhHHHHHHHHHhcCC---HHHHHHHHHhccCCCCCCcH
Q 011362 307 ADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK----CEFDIRAYNSLIDGLCKSGR---LEIALELFRSLPCGVLVPNV 379 (487)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~ 379 (487)
....++..+...+...|++++|...+++..... .+.....+..+...+...|+ +++|..++++... .+...
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~--~~~~~ 339 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML--YADLE 339 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--HHHHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--HHHHH
Confidence 233455556666666666666666665554321 11111223444455555555 5555555554421 11122
Q ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 380 VTYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 380 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
..+..+...|...|++++|...+++..
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344445555555555555555555543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-12 Score=112.01 Aligned_cols=235 Identities=9% Similarity=0.001 Sum_probs=163.0
Q ss_pred CHHhHHHHHHHHHhc----CCH----HHHHHHHHHHHhcCCCCCHHHHHHHHHHHH-------ccCCh-------HHHHH
Q 011362 22 DAVTFTSLIKGLCAE----SRI----MEAAALFTKLRVFGCEPDVFTYTTLVNGLC-------RTSHT-------IVALN 79 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~a~~ 79 (487)
+...|...+..-.+. ++. ++|+.+|++++... +.++..|..++..+. ..|++ ++|..
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~ 85 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAAN 85 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHH
Confidence 345666666664443 233 78999999999874 667788888887775 35886 89999
Q ss_pred HHHHHHhC-CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-Hh-hHHHHHHHHHhcCChhhHHHH
Q 011362 80 LFEEMANG-NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPN-VV-TYTSVIRGFCYAKDWNEAKRL 156 (487)
Q Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~ 156 (487)
+|++..+. . |.+...|..++..+.+.|++++|.++|+++.+. .|+ .. +|..++..+.+.|++++|..+
T Consensus 86 ~~~rAl~~~~-------p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 86 IYERAISTLL-------KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHTTTT-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHhC-------cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 99999983 4 556778999999999999999999999999885 343 43 788888888889999999999
Q ss_pred HHHHHHcCCCCChhhHHHHHHHHH-hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC-
Q 011362 157 FIEMMDQGVQPNVVTFNVIMDELC-KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMG- 234 (487)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 234 (487)
|++..+... ++...|...+.... ..|++++|..+|+..++.. +.+...+..++..+.+.|++++|..+|++.....
T Consensus 157 ~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~ 234 (308)
T 2ond_A 157 FKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234 (308)
T ss_dssp HHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccC
Confidence 999887532 23333333322221 2577777777777766542 2255666666666666777777777777666642
Q ss_pred CCC--CHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 235 CKH--TVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 235 ~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.+| ....|..++....+.|+.+.|..+++++.+.
T Consensus 235 l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 232 3445566666666666666666666666553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-14 Score=130.72 Aligned_cols=214 Identities=11% Similarity=-0.046 Sum_probs=177.5
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRI-MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
++++|++.++...... +.+...+..+...+...|++ ++|++.|+++++.. +.+..+|..+..+|...|++++|++.|
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3567888888877764 45788999999999999999 99999999999885 556889999999999999999999999
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc-----
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKE---------GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA----- 147 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 147 (487)
+++.+.. |+...+..+..++... |++++|++.|++..+.. +.+...|..+..+|...
T Consensus 161 ~~al~~~--------p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 161 SGALTHC--------KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHTTC--------CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhC--------CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhc
Confidence 9999865 5578999999999999 99999999999998864 34678888899999888
Q ss_pred ---CChhhHHHHHHHHHHcCCC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH
Q 011362 148 ---KDWNEAKRLFIEMMDQGVQ--PNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH 222 (487)
Q Consensus 148 ---~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 222 (487)
|++++|+..|++..+.... .+...+..+..+|...|++++|...|++..+... .+...+..+..++...|++++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~e 310 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTS 310 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 8899999999998876431 3677788888888888899999888888877632 256677777777777787777
Q ss_pred HHHHHH
Q 011362 223 AKELFV 228 (487)
Q Consensus 223 a~~~~~ 228 (487)
|.+.+.
T Consensus 311 Ai~~~~ 316 (474)
T 4abn_A 311 LLESKG 316 (474)
T ss_dssp HHHHTT
T ss_pred HHHHhc
Confidence 776543
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-14 Score=129.29 Aligned_cols=196 Identities=12% Similarity=-0.022 Sum_probs=99.4
Q ss_pred cchHHHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 011362 97 PNTVTYTTIIDGLCKEGFV-DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVI 175 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 175 (487)
.+...+..+..++...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|...|++..+.. |+...+..+
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~l 176 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNL 176 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHH
Confidence 3444555555555555555 55555555554432 1234455555555555555555555555554432 334444445
Q ss_pred HHHHHhC---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--------CCHhHHHHHHHHHHHcCCC--
Q 011362 176 MDELCKN---------GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT--------GRVNHAKELFVSMESMGCK-- 236 (487)
Q Consensus 176 ~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~-- 236 (487)
...+... |++++|+..+++..+... .+...+..+..++... |++++|...|++..+.. +
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~ 254 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RKA 254 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GGG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CCc
Confidence 5555555 555555555555554421 2344555555555554 55555555555555542 2
Q ss_pred -CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 237 -HTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFD 298 (487)
Q Consensus 237 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (487)
.+...+..+..+|...|++++|...|++..+..+. +...+..+...+...|++++|...+.
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555555555555555555555555543222 33445555555555555555555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-13 Score=107.80 Aligned_cols=88 Identities=15% Similarity=0.018 Sum_probs=33.1
Q ss_pred HHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHH
Q 011362 317 DGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMD 396 (487)
Q Consensus 317 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 396 (487)
..+...++++.+...+.+..... +.+...+..+...|...|++++|++.|+++.+.. +.+..+|..+..+|...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 33333344444444443333322 2233333333333334444444444443333321 222333333334444444444
Q ss_pred HHHHHHHHHH
Q 011362 397 KARDLFLDME 406 (487)
Q Consensus 397 ~A~~~~~~~~ 406 (487)
+|...|++++
T Consensus 159 ~A~~~~~~al 168 (184)
T 3vtx_A 159 EAVKYFKKAL 168 (184)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444444433
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=125.90 Aligned_cols=177 Identities=14% Similarity=0.048 Sum_probs=136.7
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-c
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVF-------GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEF-G 92 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 92 (487)
.+..++..+...+...|++++|+.+++++.+. ..+....++..+...+...|++++|...++++....... +
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 34678899999999999999999999999874 223345678889999999999999999999987641000 0
Q ss_pred cccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CC-CCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc--
Q 011362 93 VVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK------NI-KPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ-- 163 (487)
Q Consensus 93 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 163 (487)
...+.....+..+...+...|++++|...++++.+. +. +....++..+...+...|++++|+..++++.+.
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 001445678889999999999999999999988764 21 224556788889999999999999999988764
Q ss_pred ----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 164 ----GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 164 ----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
+..| ....+..+...+...|++++|...++.+.+
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1122 234677788888899999999999888775
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.3e-14 Score=121.90 Aligned_cols=248 Identities=13% Similarity=0.051 Sum_probs=154.1
Q ss_pred cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc----
Q 011362 95 CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-------NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ---- 163 (487)
Q Consensus 95 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 163 (487)
.+.+..++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...++++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 3556778899999999999999999999988763 22334567888899999999999999999988764
Q ss_pred --CC-CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 164 --GV-QPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH------GV-RPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 164 --~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
+. +.....+..+...+...|++++|...++.+.+. +. +.....+..+...+...|++++|...++++...
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11 223456777888888899999999888887654 11 223456677778888888888888888877654
Q ss_pred ------C-CCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC-------CccChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 011362 234 ------G-CKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG-------IKPDVVIHNTLFVGLFEIHQVERAFKLFDE 299 (487)
Q Consensus 234 ------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 299 (487)
+ .+.....+..+..+|...|++++|...++++.... ..+........
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~------------------- 243 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH------------------- 243 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH-------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH-------------------
Confidence 1 12234456677777777888888888777776521 01111111111
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhcc
Q 011362 300 MQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLP 371 (487)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 371 (487)
...+......+...+.+.++...+....... +....++..+..+|...|++++|...+++..
T Consensus 244 ---------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 244 ---------AEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ---------HHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ---------HHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1112222233334455555555555555432 3445566666667777777777777766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.52 E-value=1.2e-11 Score=111.55 Aligned_cols=308 Identities=10% Similarity=-0.023 Sum_probs=152.5
Q ss_pred ccchHHHHHHHHHH--HhcCChhHHHHHHHHHHhC--CCC--CCHhhHHHHHHH--HHhcCChhhHH---------HHHH
Q 011362 96 EPNTVTYTTIIDGL--CKEGFVDKAKELLLQMKDK--NIK--PNVVTYTSVIRG--FCYAKDWNEAK---------RLFI 158 (487)
Q Consensus 96 ~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~--~~~--~~~~~~~~l~~~--~~~~~~~~~a~---------~~~~ 158 (487)
-|+..+-..+-..| ...+++++|..+++++.+. .+. ++...|..++.. ....+.+..+. ..++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 34555555555555 6788999999999887553 121 223333333332 11122222222 5555
Q ss_pred HHHHcCCCCCh-h---hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHcCCCHhHHHHHHHH
Q 011362 159 EMMDQGVQPNV-V---TFNVIMDELCKNGKMDEASRLLDLMIQHGV-RP----DAFTYNTLLDGFCLTGRVNHAKELFVS 229 (487)
Q Consensus 159 ~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~ 229 (487)
.+.....+.+. . .+......+...|++++|+..+++..+... .+ ...++..+...+...|+++.|...+.+
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 54332111010 0 122233455677788888888777765311 01 234566677777777777777777776
Q ss_pred HHHcC--CC----CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC----CCc-cChhhHHHHHHHHHhcCCHHHHHHHHH
Q 011362 230 MESMG--CK----HTVFSYSILINGYCKNKEIEGALSLYSEMLSK----GIK-PDVVIHNTLFVGLFEIHQVERAFKLFD 298 (487)
Q Consensus 230 ~~~~~--~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 298 (487)
..+.. .. ....++..+..+|...|++++|...+.+.... +.. ....++..+...+...|++++|...+.
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~ 246 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 65421 00 11344556666677777777777776665542 111 112244455555566666666666665
Q ss_pred HHHH-----cCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCC----CCChHhHHHHHHHHHhcCC---HHHHHHH
Q 011362 299 EMQR-----NGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKC----EFDIRAYNSLIDGLCKSGR---LEIALEL 366 (487)
Q Consensus 299 ~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~a~~~ 366 (487)
+..+ .. +....++..+...+.+.|++++|...+++...... +.....+..+...+...++ +.+|...
T Consensus 247 ~al~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~ 325 (378)
T 3q15_A 247 KAAKVSREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSY 325 (378)
T ss_dssp HHHHHHHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 5544 21 22244455555555555666666555555543211 1112223334444444444 4455555
Q ss_pred HHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 011362 367 FRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDME 406 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 406 (487)
+++... .+.....+..+...|...|++++|...|+++.
T Consensus 326 ~~~~~~--~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 326 FEKKNL--HAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhCCC--hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444221 01112233444455555555555555555443
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.7e-11 Score=110.65 Aligned_cols=307 Identities=12% Similarity=-0.007 Sum_probs=170.0
Q ss_pred CCHHhHHHHHHHH--HhcCCHHHHHHHHHHHHhcC--CCCCHH--HHHHHHHH--HHccCChHHHH---------HHHHH
Q 011362 21 PDAVTFTSLIKGL--CAESRIMEAAALFTKLRVFG--CEPDVF--TYTTLVNG--LCRTSHTIVAL---------NLFEE 83 (487)
Q Consensus 21 ~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~--~~~~~~--~~~~l~~~--~~~~g~~~~a~---------~~~~~ 83 (487)
|+..+-+.|-..| ...+++++|..+++++.... ...|.. .|..++.. ....+....+. +.++.
T Consensus 8 ~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (378)
T 3q15_A 8 PSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87 (378)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHH
Confidence 4555566666677 88999999999999876531 222333 33333322 11112222222 55666
Q ss_pred HHhCCCCCccccccch----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CC----CHhhHHHHHHHHHhcCChhhHH
Q 011362 84 MANGNGEFGVVCEPNT----VTYTTIIDGLCKEGFVDKAKELLLQMKDKNI-KP----NVVTYTSVIRGFCYAKDWNEAK 154 (487)
Q Consensus 84 ~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~ 154 (487)
+.... .+.+. ..+...+..+...|++++|...|++..+... .+ ...++..+..+|...|+++.|.
T Consensus 88 i~~~~------~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~ 161 (378)
T 3q15_A 88 IETPQ------KKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSM 161 (378)
T ss_dssp HHGGG------HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhccC------CCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHH
Confidence 54422 01111 1233455667788899999999888765411 01 2446777888888888888888
Q ss_pred HHHHHHHHcCCC-C-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcCCCHhHH
Q 011362 155 RLFIEMMDQGVQ-P-----NVVTFNVIMDELCKNGKMDEASRLLDLMIQH----GVR-PDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 155 ~~~~~~~~~~~~-~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a 223 (487)
..+.+..+.... + ...+++.+..+|...|++++|...+++..+. +.. ....++..+..++...|++++|
T Consensus 162 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A 241 (378)
T 3q15_A 162 YHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMA 241 (378)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 888887653111 1 1345666777788888888888887776542 111 1124556666777777777777
Q ss_pred HHHHHHHHHc----CCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCc---c-ChhhHHHHHHHHHhcCC---HHH
Q 011362 224 KELFVSMESM----GCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIK---P-DVVIHNTLFVGLFEIHQ---VER 292 (487)
Q Consensus 224 ~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~---~~~ 292 (487)
...+++..+. +.+....++..+..+|.+.|++++|...+++....... + ....+..+...+...++ ..+
T Consensus 242 ~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~ 321 (378)
T 3q15_A 242 VEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHD 321 (378)
T ss_dssp HHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 7777766541 11223455666666666777777777776666552111 1 11223333333444444 444
Q ss_pred HHHHHHHHHHcCCCCc-HHhHHHHHHHHHhCCCHhHHHHHHHHHH
Q 011362 293 AFKLFDEMQRNGVAAD-TWTYRTFIDGLCKNGYIVEAVELFHTLR 336 (487)
Q Consensus 293 a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 336 (487)
|...++. .+..++ ...+..+...|...|++++|...|++..
T Consensus 322 al~~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 322 LLSYFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4444433 111111 2233445555555555555555555543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.50 E-value=2.1e-11 Score=109.86 Aligned_cols=276 Identities=11% Similarity=-0.030 Sum_probs=170.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF----TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
.+......+...|++++|...+++........+.. ++..+...+...|++++|...+++.....+..+. ......
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-WHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-HHHHHH
Confidence 34455667778999999999999988764222322 4566777888999999999999987764311000 011123
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC--C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC----Ch
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDK----NIK--P-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP----NV 169 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~ 169 (487)
++..+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+++........ ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 4667788888999999999999887653 221 2 23456667888888999999999998887643221 12
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHH----HHHHHHHcCCCHhHHHHHHHHHHHcCCCC---CHh
Q 011362 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPD--AFTYN----TLLDGFCLTGRVNHAKELFVSMESMGCKH---TVF 240 (487)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 240 (487)
..+..+...+...|++++|...++........++ ..... ..+..+...|++++|...++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 3456677778888888888888887764311111 11111 22334667788888887777765432111 112
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHC----CCccCh-hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSK----GIKPDV-VIHNTLFVGLFEIHQVERAFKLFDEMQ 301 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~ 301 (487)
.+..+...+...|++++|...+++.... +..++. ..+..+..++...|+.++|...+.+..
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3455566666777777777776665432 111111 133344445555556666555555544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.5e-12 Score=125.56 Aligned_cols=168 Identities=12% Similarity=-0.003 Sum_probs=150.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
|.++.+|+.|..+|.+.|++++|++.|+++++.. +.+..++..+..+|.+.|++++|++.|+++.+.+ |.+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-------P~~~ 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-------PTFA 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCH
Confidence 3458889999999999999999999999999885 5567889999999999999999999999999876 6678
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 179 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (487)
..|..+..++...|++++|++.|++..+.. +-+..+|..+..++...|++++|++.|++.++.... +...+..+..++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l 155 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHH
Confidence 999999999999999999999999998864 336889999999999999999999999999987543 677888999999
Q ss_pred HhCCChHHHHHHHHHHHH
Q 011362 180 CKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 180 ~~~~~~~~a~~~~~~~~~ 197 (487)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 999999999998887764
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.9e-12 Score=101.45 Aligned_cols=166 Identities=15% Similarity=0.019 Sum_probs=116.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|+..++++.+.. +.+..++..++..+...|++++|...++++.+.. +.+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 79 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-------PDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-------CCCHHHH
Confidence 4456667777778888888888887776653 4456667777777778888888888888777654 4566777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
..++..+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+...
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-NEGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHc
Confidence 777777777777777777777776653 33566677777777777777777777777766532 2455666666677777
Q ss_pred CChHHHHHHHHHHHHC
Q 011362 183 GKMDEASRLLDLMIQH 198 (487)
Q Consensus 183 ~~~~~a~~~~~~~~~~ 198 (487)
|++++|...++.+.+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7777777777666543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-11 Score=106.57 Aligned_cols=270 Identities=10% Similarity=-0.019 Sum_probs=124.3
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh----hHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHH
Q 011362 138 TSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV----TFNVIMDELCKNGKMDEASRLLDLMIQHGV-RPD----AFTYN 208 (487)
Q Consensus 138 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 208 (487)
......+...|++++|...+++........+.. .+..+...+...|++++|...+++...... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 334445566777777777777766643222211 334455566666777777777766554210 011 12234
Q ss_pred HHHHHHHcCCCHhHHHHHHHHHHHc----CCC--C-CHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCcc----ChhhH
Q 011362 209 TLLDGFCLTGRVNHAKELFVSMESM----GCK--H-TVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKP----DVVIH 277 (487)
Q Consensus 209 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~ 277 (487)
.+...+...|++++|...+++.... +.+ | ....+..+...+...|++++|...+.+........ ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 4555566666666666666665432 111 1 12334445555566666666666666555421110 11234
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HHhHH----HHHHHHHhCCCHhHHHHHHHHHHHcCCCC---ChHhHH
Q 011362 278 NTLFVGLFEIHQVERAFKLFDEMQRNGVAAD--TWTYR----TFIDGLCKNGYIVEAVELFHTLRILKCEF---DIRAYN 348 (487)
Q Consensus 278 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~ 348 (487)
..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...++........+ ....+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 4444555555555555555555443211110 10110 11222445555555555555544322110 011233
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC----CCCCcH-HHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 349 SLIDGLCKSGRLEIALELFRSLPCG----VLVPNV-VTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
.+...+...|++++|...+++.... +..++. .++..+..++...|++++|...+++...
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444455555555555555444321 101111 1333344444455555555555555544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=112.29 Aligned_cols=163 Identities=10% Similarity=-0.003 Sum_probs=125.6
Q ss_pred CCccchHHHHHHHHHhC-------CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc------CC-CCCHHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKS-------CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVF------GC-EPDVFTYTTLVN 66 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~ 66 (487)
.|++++|+..|+++++. +.+....++..+...|...|++++|+..++++.+. +- +....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 36778888888887763 22335778899999999999999999999998865 21 223457888999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCc-cccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC------C-CCCCHhhHH
Q 011362 67 GLCRTSHTIVALNLFEEMANGNGEFG-VVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK------N-IKPNVVTYT 138 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~ 138 (487)
.+...|++++|++.++++.......+ ...+.....+..+..++...|++++|...+++..+. + .+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999876410000 001445678899999999999999999999988764 1 122356788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
.+..++...|++++|...++++.+.
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 8899999999999999999988763
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-11 Score=102.34 Aligned_cols=209 Identities=10% Similarity=-0.020 Sum_probs=161.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+.++..+......+...|++++|+..|+++.+...+++...+..+..++...|++++|+..|++..+.. |.+.
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~ 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-------YNLA 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CSHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-------cchH
Confidence 346788889999999999999999999999988643788888889999999999999999999999876 6678
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH-------hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---h
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV-------VTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN---V 169 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~ 169 (487)
..+..+..++...|++++|.+.+++..+.. +.+. ..|..+...+...|++++|+..|+++.+. .|+ .
T Consensus 77 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 153 (228)
T 4i17_A 77 NAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKT 153 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccH
Confidence 899999999999999999999999998863 2344 45888889999999999999999999875 444 4
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 011362 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILIN 247 (487)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 247 (487)
..+..+..++...| ..+++.+...+. .+...+.... ....+.+++|...+++..+.. |.+..+...+..
T Consensus 154 ~~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~ 222 (228)
T 4i17_A 154 DALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence 56666777775443 344555554432 2344444333 334566899999999998875 445555544443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-11 Score=101.07 Aligned_cols=206 Identities=15% Similarity=0.008 Sum_probs=161.0
Q ss_pred CCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH
Q 011362 236 KHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTF 315 (487)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 315 (487)
+.++..+......+...|++++|+..|++......+++...+..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 346678889999999999999999999999987654677777789999999999999999999999864 3456788899
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHcCCCCCh-------HhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc---HHHHHHH
Q 011362 316 IDGLCKNGYIVEAVELFHTLRILKCEFDI-------RAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN---VVTYSIM 385 (487)
Q Consensus 316 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l 385 (487)
..++...|++++|...+++..+.. +.+. ..+..+...+...|++++|...|+++.+. .|+ ...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHH
Confidence 999999999999999999999875 4455 55788888899999999999999999986 454 5678888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCH-HHHHHH
Q 011362 386 IGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDA-SIVSIV 455 (487)
Q Consensus 386 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l 455 (487)
..+|...| ...++++...+ ..+...|.... ....+.+++|...+++..+.. |+. .+...+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~--p~~~~~~~~l 220 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS--PNRTEIKQMQ 220 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHH
Confidence 88886544 44456665543 22444444333 345667899999999999864 544 444443
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=119.78 Aligned_cols=168 Identities=10% Similarity=0.010 Sum_probs=147.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV 134 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 134 (487)
+.+..+++.+..++.+.|++++|++.|++..+.. |.+..++..+..+|.+.|++++|++.|++..+.. +-+.
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-------P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~ 77 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-------PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFA 77 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 3456789999999999999999999999999876 6678899999999999999999999999998864 3367
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011362 135 VTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGF 214 (487)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (487)
.+|..+..++...|++++|++.|++.++.... +...+..+..+|...|++++|+..|++.++... -+...+..+..++
T Consensus 78 ~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l 155 (723)
T 4gyw_A 78 DAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCL 155 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHH
Confidence 89999999999999999999999999887543 677889999999999999999999999988743 2678899999999
Q ss_pred HcCCCHhHHHHHHHHHHH
Q 011362 215 CLTGRVNHAKELFVSMES 232 (487)
Q Consensus 215 ~~~~~~~~a~~~~~~~~~ 232 (487)
...|++++|.+.++++.+
T Consensus 156 ~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 156 QIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHTTCCTTHHHHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 999999999999888754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-11 Score=96.51 Aligned_cols=162 Identities=17% Similarity=0.125 Sum_probs=85.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
.+..+...+...|++++|+..++++.+.. +.+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 81 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-------AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATV 81 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHH
Confidence 34455555556666666666666655543 3445555566666666666666666666655442 224455555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 140 VIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 140 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
+...+...|++++|.+.++++..... .+...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|+
T Consensus 82 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~ 159 (186)
T 3as5_A 82 LGLTYVQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGR 159 (186)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCC
Confidence 55555556666666666655554422 234444445555555555555555555554432 1234444445555555555
Q ss_pred HhHHHHHHHHHH
Q 011362 220 VNHAKELFVSME 231 (487)
Q Consensus 220 ~~~a~~~~~~~~ 231 (487)
+++|...++.+.
T Consensus 160 ~~~A~~~~~~~~ 171 (186)
T 3as5_A 160 HEEALPHFKKAN 171 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.38 E-value=2.6e-09 Score=98.92 Aligned_cols=376 Identities=9% Similarity=-0.019 Sum_probs=198.2
Q ss_pred C-ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC-hHHHHH
Q 011362 2 G-RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH-TIVALN 79 (487)
Q Consensus 2 g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~ 79 (487)
| +++.|+.+|++++..- |. |+++.+..+|++.+.. .|+...|...+.-..+.++ .+....
T Consensus 8 ~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~ 69 (493)
T 2uy1_A 8 GVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYE 69 (493)
T ss_dssp ----CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHH
T ss_pred CcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHH
Confidence 5 4888999999988763 23 8899999999999985 5799998888877766663 456777
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCC-H-hhHHHHHHHHHhcCChhhH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLC----KEGFVDKAKELLLQMKDKNIKPN-V-VTYTSVIRGFCYAKDWNEA 153 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a 153 (487)
+|+.+...-+. -+.+...|...+..+. ..++.+.+..+|++.+.. ++. . ..|...... ........+
T Consensus 70 ~fe~al~~vg~----d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~f-E~~~~~~~~ 142 (493)
T 2uy1_A 70 VYEFTLGQFEN----YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFENF-ELELNKITG 142 (493)
T ss_dssp HHHHHHHHSTT----CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHHH-HHHHCHHHH
T ss_pred HHHHHHHHcCC----CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHHH-HHHhccccH
Confidence 88887764210 1456788888887654 246788999999999874 221 1 122222111 111111222
Q ss_pred HHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--C-----CHhHHHHH
Q 011362 154 KRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT--G-----RVNHAKEL 226 (487)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~-----~~~~a~~~ 226 (487)
.+++.+.. +.+..|..+++.+...-...+...|...+..-... + ..+.+..+
T Consensus 143 ~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ 201 (493)
T 2uy1_A 143 KKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFI 201 (493)
T ss_dssp HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHH
Confidence 22222111 01112222222211100001222333333322111 0 02334455
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 011362 227 FVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN--- 303 (487)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 303 (487)
|+++.... +.+...|...+..+.+.|+.+.|..++++.... +.+...+.. |....+.++. ++.+.+.
T Consensus 202 ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~~~~ 271 (493)
T 2uy1_A 202 HNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHHTC-
T ss_pred HHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHHHHh
Confidence 65555432 444555666666666666666666666666655 222222211 1111111111 1111110
Q ss_pred ------CC---CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh-cCCHHHHHHHHHhccCC
Q 011362 304 ------GV---AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK-SGRLEIALELFRSLPCG 373 (487)
Q Consensus 304 ------~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 373 (487)
+. ......|...+....+.+..+.|..+|+.+ ... +.+...|...+..-.. .++.+.|..+|+...+.
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 00 011234555555555667788888888877 221 2233344332222222 23578888888877654
Q ss_pred CCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 374 VLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 374 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
. +.++..+...+......|+.+.|..+|+++. .....|...+..-...|+.+.+..+++++.
T Consensus 350 ~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 350 H-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2 2234455556666667788888888888762 256667777766667788888888777776
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=106.71 Aligned_cols=164 Identities=12% Similarity=-0.006 Sum_probs=121.1
Q ss_pred HhcCCHHHHHHHHHHHHhc-------CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCC-ccccccchHHHHHH
Q 011362 34 CAESRIMEAAALFTKLRVF-------GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEF-GVVCEPNTVTYTTI 105 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l 105 (487)
...|++++|+..|++.++. ..+....++..+...+...|++++|+..++++.+..... +...+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567888888877777653 212345578889999999999999999999987641000 00014456788999
Q ss_pred HHHHHhcCChhHHHHHHHHHHhC------C-CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc------CCCC-Chhh
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDK------N-IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ------GVQP-NVVT 171 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~ 171 (487)
..++...|++++|.+.+++.... . .+....++..+...+...|++++|...++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999988764 1 1234567888889999999999999999988764 1122 3456
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 172 FNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 172 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
+..+...+...|++++|..+++.+.+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888888888888888887765
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.2e-11 Score=101.74 Aligned_cols=173 Identities=11% Similarity=-0.013 Sum_probs=122.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVF----GCEPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
.|...+..|...|++++|+..|+++... +-+++ ..++..+..+|...|++++|+..+++..+..+..|. .....
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a 117 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRGA 117 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC-HHHHH
Confidence 4666677888999999999999998765 21122 457889999999999999999999988764311000 01114
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-C----HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh---
Q 011362 100 VTYTTIIDGLCKE-GFVDKAKELLLQMKDKNIKP-N----VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV--- 170 (487)
Q Consensus 100 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--- 170 (487)
.++..+..+|... |++++|+..|++..+..... + ..++..+...+...|++++|+..|++..+........
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5778888888886 89999988888876531100 1 3457778888888888888888888887754332221
Q ss_pred ---hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 011362 171 ---TFNVIMDELCKNGKMDEASRLLDLMIQH 198 (487)
Q Consensus 171 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 198 (487)
.+..+..++...|++++|...|++..+.
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3556666777788888888888777653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-10 Score=98.98 Aligned_cols=104 Identities=11% Similarity=0.009 Sum_probs=87.5
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccc
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD---VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCE 96 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 96 (487)
+.+...+..+...+.+.|++++|+..|+++++.. +.+ ..++..++.++...|++++|+..|+++.+..+. .+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~----~~ 86 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI----DP 86 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----CT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC----Cc
Confidence 4467788888999999999999999999999874 333 668889999999999999999999999987521 12
Q ss_pred cchHHHHHHHHHHHh--------cCChhHHHHHHHHHHhC
Q 011362 97 PNTVTYTTIIDGLCK--------EGFVDKAKELLLQMKDK 128 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~ 128 (487)
.....+..+..++.. .|++++|+..|+++.+.
T Consensus 87 ~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 87 RVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp THHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 345678888899988 99999999999999876
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.7e-10 Score=98.45 Aligned_cols=164 Identities=10% Similarity=0.002 Sum_probs=81.1
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCC----cc-ChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCC-c----H
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGI----KP-DVVIHNTLFVGLFEI-HQVERAFKLFDEMQRNGVAA-D----T 309 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~ 309 (487)
+|..+..+|...|++++|+..+++...... .. ...++..+...|... |++++|...+++..+..... + .
T Consensus 79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~ 158 (292)
T 1qqe_A 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (292)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence 445555555555555555555555443110 00 022344555555553 66666666666554421000 0 2
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCh------HhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcH----
Q 011362 310 WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDI------RAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNV---- 379 (487)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---- 379 (487)
.++..+...+...|++++|...|++.......... ..+..+..++...|++++|...|++..+. .|+.
T Consensus 159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~ 236 (292)
T 1qqe_A 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR 236 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence 34556666666667777777777666654322111 13455556666667777777777666653 2221
Q ss_pred --HHHHHHHHHHH--ccCCHHHHHHHHHHHH
Q 011362 380 --VTYSIMIGGLC--NDGQMDKARDLFLDME 406 (487)
Q Consensus 380 --~~~~~l~~~~~--~~g~~~~A~~~~~~~~ 406 (487)
..+..++.++. ..+++++|+..|+++.
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 12233344443 3345555555555543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.30 E-value=2.2e-09 Score=90.69 Aligned_cols=62 Identities=11% Similarity=0.076 Sum_probs=27.6
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCC-ccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGI-KPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
.+..+..++...|++++|++++.+.+..+. .-+...+...+..+.+.|+.+.|.+.++.|.+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 333444444444555555555544443322 11233344444444444444444444444444
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-10 Score=90.30 Aligned_cols=178 Identities=13% Similarity=-0.030 Sum_probs=140.4
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC----ChHHHHHH
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS----HTIVALNL 80 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~ 80 (487)
++|++.|+.+.+.| ++.++..+...|...+++++|+.+|++..+.| ++..+..+...|.. + ++++|+.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 46888999998874 78888889999999999999999999998754 56777788888877 6 89999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CCHhhHHHHHHHHHh----cCChh
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIK-PNVVTYTSVIRGFCY----AKDWN 151 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~ 151 (487)
|++..+.+ ++..+..|...|.. .+++++|+++|++..+.|.. .++..+..|...|.. .++++
T Consensus 76 ~~~A~~~g---------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~ 146 (212)
T 3rjv_A 76 AEKAVEAG---------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDV 146 (212)
T ss_dssp HHHHHHTT---------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHH
T ss_pred HHHHHHCC---------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHH
Confidence 99987744 56788888888877 78999999999998887531 126778888888887 77899
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHHHHHHhC-C-----ChHHHHHHHHHHHHCCC
Q 011362 152 EAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-G-----KMDEASRLLDLMIQHGV 200 (487)
Q Consensus 152 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 200 (487)
+|+.+|++..+. ..+...+..+..+|... | ++++|..+|+...+.|.
T Consensus 147 ~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 147 KASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999988876 22444666677777543 2 78888888888877654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.9e-11 Score=116.35 Aligned_cols=150 Identities=11% Similarity=-0.065 Sum_probs=81.4
Q ss_pred CccchHHHHHHHHH--------hCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC
Q 011362 2 GRVSHGFVVLGRIL--------KSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH 73 (487)
Q Consensus 2 g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 73 (487)
|++++|++.|++++ +.. +.+...+..+..++...|++++|+..|+++.+.+ +.+...+..+..++...|+
T Consensus 405 ~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~ 482 (681)
T 2pzi_A 405 SQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGD 482 (681)
T ss_dssp CCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCC
Confidence 45555566665555 332 3344555555555555666666666665555543 3344555555555555566
Q ss_pred hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhH
Q 011362 74 TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEA 153 (487)
Q Consensus 74 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 153 (487)
+++|+..|+++.+.. |.+...+..+..++.+.|++++ ++.|++..+.+ +.+...|..+..++.+.|++++|
T Consensus 483 ~~~A~~~~~~al~l~-------P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A 553 (681)
T 2pzi_A 483 YDSATKHFTEVLDTF-------PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGA 553 (681)
T ss_dssp HHHHHHHHHHHHHHS-------TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHH
Confidence 666666665555543 3345555555555555555555 55555555442 22444555555555555555555
Q ss_pred HHHHHHHHH
Q 011362 154 KRLFIEMMD 162 (487)
Q Consensus 154 ~~~~~~~~~ 162 (487)
++.|+++.+
T Consensus 554 ~~~~~~al~ 562 (681)
T 2pzi_A 554 VRTLDEVPP 562 (681)
T ss_dssp HHHHHTSCT
T ss_pred HHHHHhhcc
Confidence 555555544
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-10 Score=93.10 Aligned_cols=244 Identities=10% Similarity=-0.005 Sum_probs=138.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL 109 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 109 (487)
++...-.|++..++.-..++. ..........+.++++..|++.... . ..|....+..+...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~~---------~------~~~~~~a~~~la~~~ 81 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQD---------P------TSKLGKVLDLYVQFL 81 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCCC---------S------SSTTHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccCC---------C------CCHHHHHHHHHHHHh
Confidence 456667788888777333322 1222233344557777777766310 1 133434444444443
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCChhhHHHHHHHHHhCCChHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGV-QPNVVTFNVIMDELCKNGKMDEA 188 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a 188 (487)
..+ |+..|+++...+ +++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|
T Consensus 82 -~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A 155 (310)
T 3mv2_B 82 -DTK----NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTA 155 (310)
T ss_dssp -TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred -ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHH
Confidence 222 566677666554 34555556677777777888888888777765543 12455566667777777888888
Q ss_pred HHHHHHHHHCCCCC-----CHHHHHHHHHHH--Hc--CCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHH
Q 011362 189 SRLLDLMIQHGVRP-----DAFTYNTLLDGF--CL--TGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGAL 259 (487)
Q Consensus 189 ~~~~~~~~~~~~~~-----~~~~~~~l~~~~--~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 259 (487)
.+.++.|.+. .| +..+...++.++ .. .+++.+|..+|+++.+. .|+..+...++.++.+.|++++|.
T Consensus 156 ~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe 231 (310)
T 3mv2_B 156 STIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQ 231 (310)
T ss_dssp HHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHH
Confidence 8877777664 33 244444455442 22 23677777777776544 343223334444667777777777
Q ss_pred HHHHHHHHCC---------CccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 011362 260 SLYSEMLSKG---------IKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRN 303 (487)
Q Consensus 260 ~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 303 (487)
+.++.+.+.. -+.++.++..++......|+ .|.+++.++.+.
T Consensus 232 ~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 232 GIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 7776554321 01234444444444444554 566666666664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.3e-11 Score=96.36 Aligned_cols=158 Identities=8% Similarity=-0.004 Sum_probs=106.9
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHH----------------HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTS----------------LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTL 64 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 64 (487)
.|++++|+..|+.++... |.+...|.. +..+|...|++++|+..|+++++.. +.+...+..+
T Consensus 17 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 94 (208)
T 3urz_A 17 AGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEAC 94 (208)
T ss_dssp TTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHH
Confidence 488999999999999875 335666766 7778888888888888888887765 4566777778
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 65 VNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF--VDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
..++...|++++|+..|+++.+.. |.+..++..+..+|...|+ ...+...+..... ..|....+..+..
T Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~-------P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~ 165 (208)
T 3urz_A 95 AEMQVCRGQEKDALRMYEKILQLE-------ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHHH
Confidence 888888888888888888887765 5567777777777765543 3344455544432 1222233444555
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCChhh
Q 011362 143 GFCYAKDWNEAKRLFIEMMDQGVQPNVVT 171 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 171 (487)
++...|++++|+..|++.++. .|+...
T Consensus 166 ~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 666677778888888777764 445433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.29 E-value=4.2e-09 Score=97.49 Aligned_cols=367 Identities=10% Similarity=-0.036 Sum_probs=217.4
Q ss_pred hcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC
Q 011362 35 AES-RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 35 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
+.| +++.|..+|+++... -|. |+++.+..+|++.... .|+...|...+....+.+
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--------~ps~~LW~~Y~~f~~~~~ 61 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--------SYNLDLWMLYIEYVRKVS 61 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--------CCCHHHHHHHHHHHHHHC
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--------CCCHHHHHHHHHHHHHhC
Confidence 346 478888888888765 233 8899999999999985 368999999998887776
Q ss_pred C-hhHHHHHHHHHHhC-CC-CCCHhhHHHHHHHHH----hcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH---hCC
Q 011362 114 F-VDKAKELLLQMKDK-NI-KPNVVTYTSVIRGFC----YAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC---KNG 183 (487)
Q Consensus 114 ~-~~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~ 183 (487)
. .+....+|+..... |. +.+...|...+..+. ..++.+.+.++|++++.. |.. ....+-..|. ...
T Consensus 62 ~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~---P~~-~~~~lw~~Y~~fE~~~ 137 (493)
T 2uy1_A 62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT---PMG-SLSELWKDFENFELEL 137 (493)
T ss_dssp ----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS---CCT-THHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC---hhh-hHHHHHHHHHHHHHHh
Confidence 4 45677788877653 42 346778888877654 245688899999999873 211 1122222221 111
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccC--C-----Hh
Q 011362 184 KMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNK--E-----IE 256 (487)
Q Consensus 184 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~-----~~ 256 (487)
....+..++.... +.+..|..+++.+...-...+...|...+..-...+ - .+
T Consensus 138 ~~~~~~~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~ 196 (493)
T 2uy1_A 138 NKITGKKIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHES 196 (493)
T ss_dssp CHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHH
T ss_pred ccccHHHHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHH
Confidence 2222333322211 123334444444332100113345555555432221 1 34
Q ss_pred HHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHH-HHHHHHH
Q 011362 257 GALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEA-VELFHTL 335 (487)
Q Consensus 257 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~ 335 (487)
.+..+|++++... +.+...|...+..+...|+.+.|..++++.... +.+...+.. |......++. ..+.+..
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~ 269 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKY 269 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHT
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHH
Confidence 5778999988753 345778888888889999999999999999987 333322222 2221111122 1222221
Q ss_pred HHc--------CCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHc-cCCHHHHHHHHHHHH
Q 011362 336 RIL--------KCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCN-DGQMDKARDLFLDME 406 (487)
Q Consensus 336 ~~~--------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~ 406 (487)
... ........|...+....+.++.+.|..+|+++ ... ..+..+|...+..-.. .++++.|..+|+...
T Consensus 270 ~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 270 SMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp C----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 100 00112356777777777788999999999999 321 2344455433332223 336999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccc
Q 011362 407 ENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEIS 465 (487)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 465 (487)
+.. +.++..+...+......|+.+.|..+++++. .....|...++.-.+.|+.
T Consensus 348 ~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 348 LKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCH
Confidence 753 2245566777887788999999998888862 2345555555544445554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.29 E-value=3.3e-10 Score=85.28 Aligned_cols=130 Identities=12% Similarity=0.162 Sum_probs=99.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
+|..++..+...|++++|+.+++++.+.+ +.+...+..++..+...|++++|...++++.+.. +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-------CCchHHHHH
Confidence 46677888888888888888888887764 4456677778888888888888888888887755 455677777
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++...
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 8888888888888888888877653 335667777788888888888888888877664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-10 Score=93.66 Aligned_cols=166 Identities=8% Similarity=-0.018 Sum_probs=102.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH----------------HHHHHHccCChHHHHHHHHHHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTT----------------LVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
++..+......+...|++++|+..|+++.+.. +.+...+.. +..++...|++++|+..|++..
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445556778889999999999999999874 334455655 6667777777777777777777
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--hhhHHHHHHHHHHc
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD--WNEAKRLFIEMMDQ 163 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~ 163 (487)
+.. |.+...+..+..++...|++++|...|++..+.. |.+..++..+..+|...|. ...+...+.....
T Consensus 82 ~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~- 152 (208)
T 3urz_A 82 QKA-------PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS- 152 (208)
T ss_dssp HHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C-
T ss_pred HHC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC-
Confidence 655 4566677777777777777777777777776653 2355666666666654432 2334444444321
Q ss_pred CCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 011362 164 GVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQH 198 (487)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 198 (487)
..|....+.....++...|++++|...|++.++.
T Consensus 153 -~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 153 -PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp -CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred -CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1222222333344555566666666666666654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.27 E-value=4.4e-10 Score=95.56 Aligned_cols=188 Identities=7% Similarity=-0.073 Sum_probs=123.4
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc---hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN---TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNI- 130 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~- 130 (487)
+.+...+..+...+...|++++|+..|+++.+.. |.+ ...+..++.++.+.|++++|+..|+++.+...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-------p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-------RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC
Confidence 4466777888888999999999999999998875 334 67888899999999999999999999987631
Q ss_pred -CCCHhhHHHHHHHHHh--------cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 011362 131 -KPNVVTYTSVIRGFCY--------AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVR 201 (487)
Q Consensus 131 -~~~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 201 (487)
+....++..+..++.. .|++++|+..|+++++..+. +......+.. +..+...
T Consensus 85 ~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~--- 146 (261)
T 3qky_A 85 DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK--- 146 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH---
T ss_pred CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH---
Confidence 1224567778888888 89999999999998876322 2222211110 0000000
Q ss_pred CCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC--CHhhHHHHHHHHHcc----------CCHhHHHHHHHHHHHC
Q 011362 202 PDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKH--TVFSYSILINGYCKN----------KEIEGALSLYSEMLSK 268 (487)
Q Consensus 202 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~ 268 (487)
....+..+...+...|++++|...|+.+.+..... ....+..+..+|... |++++|...++++...
T Consensus 147 -~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 147 -LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 01123445566666677777777766666542110 233455556666544 6667777777776664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.7e-11 Score=90.78 Aligned_cols=143 Identities=9% Similarity=-0.092 Sum_probs=73.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
..+...|++++|+..++...... +.+...+..+...|...|++++|++.|+++.+.. |.+..+|..+..++.
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-------ERDPKAHRFLGLLYE 76 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 34444555566666555554331 1122234455555666666666666666655544 445555666666666
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHH-HHHHHHcCCCCChhhHHHHHHHHHhCC
Q 011362 111 KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRL-FIEMMDQGVQPNVVTFNVIMDELCKNG 183 (487)
Q Consensus 111 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (487)
..|++++|+..|++..+.. +-+..+|..+..++.+.|++++|.+. +++..+..+. ++..|......+...|
T Consensus 77 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 77 LEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred HcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence 6666666666666555542 22455555555566666655554443 3555544222 3444444444444444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=4.7e-11 Score=91.66 Aligned_cols=138 Identities=12% Similarity=-0.038 Sum_probs=92.1
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLF 81 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 81 (487)
|++++|+..++.++... |.+...+..+...|.+.|++++|++.|+++++.. +.+..+|..+..++...|++++|+..|
T Consensus 11 ~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~ 88 (150)
T 4ga2_A 11 ADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVECY 88 (150)
T ss_dssp HHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHHH
Confidence 45677777777776653 2235556667777777777777777777777764 456667777777777777777777777
Q ss_pred HHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCCHhhHHHHHHHHHhcCC
Q 011362 82 EEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL-LLQMKDKNIKPNVVTYTSVIRGFCYAKD 149 (487)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 149 (487)
+++.+.. |.+..++..+..+|.+.|++++|.+. +++..+.. |-++.+|......+...|+
T Consensus 89 ~~al~~~-------p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 89 RRSVELN-------PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHC-------TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 7777765 45667777777777777777665544 46666542 2355666666666555553
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.3e-10 Score=108.11 Aligned_cols=155 Identities=8% Similarity=-0.021 Sum_probs=122.5
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|++.|+++++.. +.+...|..+...+...|++++|++.|+++.+.. +.+...+..+..++...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 489999999999999885 4578899999999999999999999999999875 55678899999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc---CChhhHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA---KDWNEAKRLF 157 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 157 (487)
+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++... |++++|.+.+
T Consensus 80 ~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 80 LQQASDAA-------PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999876 6678899999999999999999999999998864 34678889999999999 9999999999
Q ss_pred HHHHHcCC
Q 011362 158 IEMMDQGV 165 (487)
Q Consensus 158 ~~~~~~~~ 165 (487)
++..+.+.
T Consensus 152 ~~al~~~p 159 (568)
T 2vsy_A 152 RAAVAQGV 159 (568)
T ss_dssp HHHHHHTC
T ss_pred HHHHhcCC
Confidence 99988753
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-10 Score=111.60 Aligned_cols=174 Identities=11% Similarity=-0.062 Sum_probs=111.0
Q ss_pred HhcCCHHHHHHHHHHHH--------hcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 34 CAESRIMEAAALFTKLR--------VFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
...|++++|++.++++. +.. +.+...+..+..++...|++++|+..|+++.+.+ |.+...|..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHHH
Confidence 56677777777777776 332 3445566667777777777777777777777654 4566677777
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCCh
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKM 185 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (487)
..++...|++++|++.|++..+.. +-+...+..+..++.+.|++++ ++.|+++.+.... +...+..+..++...|++
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDR 550 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCH
Confidence 777777777777777777776653 2255666677777777777777 7777777665332 455666677777777777
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 186 DEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 186 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
++|+..|+++.+.+. .+...+..+..++...++
T Consensus 551 ~~A~~~~~~al~l~P-~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 551 VGAVRTLDEVPPTSR-HFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHHHHTSCTTST-THHHHHHHHHHHTC----
T ss_pred HHHHHHHHhhcccCc-ccHHHHHHHHHHHHccCC
Confidence 777777776655421 134455555555554443
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.4e-09 Score=88.60 Aligned_cols=190 Identities=7% Similarity=-0.094 Sum_probs=123.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE-P-DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+...+..++..+...|++++|+..|+++.+.... + ....+..++.++.+.|++++|+..|+++.+..+.. +.-.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~----~~~~ 78 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH----PNID 78 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----TTHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC----CcHH
Confidence 4556677788899999999999999999986422 1 13578888999999999999999999999866210 1111
Q ss_pred HHHHHHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 100 VTYTTIIDGLCK------------------EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 100 ~~~~~l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
.++..+..++.. .|++++|...|+++.+.. |-+..++....... .+...+.
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~~ 147 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRLA 147 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHHH
Confidence 355555555554 456677777777776642 11222222111100 0000000
Q ss_pred HcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 162 DQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRP--DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
.....+...+.+.|++++|+..|+.+++..... ....+..+..++.+.|++++|.+.++.+...+
T Consensus 148 --------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 --------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011345667888888888888888887763221 12467778888888888888888888877664
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=7e-10 Score=95.48 Aligned_cols=163 Identities=12% Similarity=0.006 Sum_probs=69.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|...++++.... |......
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~-------p~~~~~~ 188 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD-------QDTRYQG 188 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG-------CSHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh-------cchHHHH
Confidence 3344444444445555555555555544442 2333444444445555555555555554444322 1111111
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHh
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELCK 181 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~ 181 (487)
......+...++.+.|...+++..... +.+...+..+...+...|++++|+..|.++.+..+.. +...+..++..+..
T Consensus 189 ~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~ 267 (287)
T 3qou_A 189 LVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAA 267 (287)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHH
Confidence 122222333444444444444444432 2234444444444444555555555554444432211 12334444444444
Q ss_pred CCChHHHHHHHHH
Q 011362 182 NGKMDEASRLLDL 194 (487)
Q Consensus 182 ~~~~~~a~~~~~~ 194 (487)
.|+.++|...+++
T Consensus 268 ~g~~~~a~~~~r~ 280 (287)
T 3qou_A 268 LGTGDALASXYRR 280 (287)
T ss_dssp HCTTCHHHHHHHH
T ss_pred cCCCCcHHHHHHH
Confidence 4444444444433
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.2e-10 Score=89.81 Aligned_cols=162 Identities=12% Similarity=0.030 Sum_probs=105.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..++++.... | +...+..
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-------p-~~~~~~~ 78 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY-------Q-DNSYKSL 78 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-------C-CHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-------C-ChHHHHH
Confidence 45556777788888888888888877654 4456677778888888888888888888776643 3 4433333
Q ss_pred HHHH-HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhC
Q 011362 105 IIDG-LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP-NVVTFNVIMDELCKN 182 (487)
Q Consensus 105 l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 182 (487)
+... +...+....|...+++..+.. +.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...
T Consensus 79 ~~~~~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 79 IAKLELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 2222 122223344667777766652 2356677777777777777777777777777654332 244566677777777
Q ss_pred CChHHHHHHHHHHH
Q 011362 183 GKMDEASRLLDLMI 196 (487)
Q Consensus 183 ~~~~~a~~~~~~~~ 196 (487)
|+.++|...|++.+
T Consensus 158 g~~~~A~~~y~~al 171 (176)
T 2r5s_A 158 GQGNAIASKYRRQL 171 (176)
T ss_dssp CSSCHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 77777777776554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-08 Score=83.96 Aligned_cols=227 Identities=15% Similarity=0.035 Sum_probs=169.6
Q ss_pred HHHHHhcCCH-HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC--ChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 30 IKGLCAESRI-MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS--HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 30 ~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
+.+..+.|.+ ++|+..++.++..+ +.+..+|+.-..++...| ++++++++++.+...+ |.+..+|+.-.
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-------Pk~y~aW~~R~ 110 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-------EKNYQIWNYRQ 110 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-------TTCCHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-------cccHHHHHHHH
Confidence 3444455655 68999999999885 556677888888888888 9999999999999987 56667776555
Q ss_pred HHH----Hhc---CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh--hHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 107 DGL----CKE---GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWN--EAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 107 ~~~----~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
.++ ... +++++++++++.+.+.. +-+..+|+.-..++.+.|.++ ++++.++++++..+. +...|+....
T Consensus 111 ~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ 188 (306)
T 3dra_A 111 LIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFF 188 (306)
T ss_dssp HHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 555 445 78999999999998875 348888888888888888888 999999999887554 6777777666
Q ss_pred HHHhCCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhH-HHHHHHHHHHcC--CCCCHhhHHHHHHH
Q 011362 178 ELCKNGK------MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNH-AKELFVSMESMG--CKHTVFSYSILING 248 (487)
Q Consensus 178 ~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~ 248 (487)
.+...+. ++++++.++.++...+. |...|+.+...+.+.|+... +..+..++.+.+ -+.++..+..++.+
T Consensus 189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~ 267 (306)
T 3dra_A 189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI 267 (306)
T ss_dssp HHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred HHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence 6666666 77888888887776433 77778777777777776443 444555554332 13456677777777
Q ss_pred HHccCCHhHHHHHHHHHHH
Q 011362 249 YCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 249 ~~~~~~~~~a~~~~~~~~~ 267 (487)
|.+.|+.++|.++++.+.+
T Consensus 268 ~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 268 YTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHccCCHHHHHHHHHHHHh
Confidence 7777888888888887765
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-08 Score=87.00 Aligned_cols=231 Identities=8% Similarity=0.022 Sum_probs=183.2
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----Hcc---CCh
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAES--RIMEAAALFTKLRVFGCEPDVFTYTTLVNGL----CRT---SHT 74 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 74 (487)
.++|+..++.++..+ |-+..+|+.-..++...| ++++++..++.++..+ +-+..+|+.-..++ ... +++
T Consensus 49 s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 368999999999997 447888999889998999 9999999999999886 45566666555444 445 789
Q ss_pred HHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC---
Q 011362 75 IVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVD--KAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD--- 149 (487)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--- 149 (487)
++++.+++++.+.+ |.+..+|+--.-++.+.|.++ ++++.++++.+.+. -|..+|+....+....+.
T Consensus 127 ~~EL~~~~~~l~~~-------pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~ 198 (306)
T 3dra_A 127 YREFDILEAMLSSD-------PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLAT 198 (306)
T ss_dssp HHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCC
T ss_pred HHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccch
Confidence 99999999999987 778889988888888889888 99999999998754 488889888777777776
Q ss_pred ---hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHhHH
Q 011362 150 ---WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDE-ASRLLDLMIQHG--VRPDAFTYNTLLDGFCLTGRVNHA 223 (487)
Q Consensus 150 ---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 223 (487)
++++++.+++++...+. |...|+.+...+.+.|+... +..+...+...+ ...++..+..++.++...|+.++|
T Consensus 199 ~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A 277 (306)
T 3dra_A 199 DNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNES 277 (306)
T ss_dssp HHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHH
Confidence 89999999999887554 78888888888888887444 555666655432 134778889999999999999999
Q ss_pred HHHHHHHHHcCCCCCHhhHHHH
Q 011362 224 KELFVSMESMGCKHTVFSYSIL 245 (487)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~l 245 (487)
.++++.+.+.--|.....|...
T Consensus 278 ~~~~~~l~~~~Dpir~~yW~~~ 299 (306)
T 3dra_A 278 RTVYDLLKSKYNPIRSNFWDYQ 299 (306)
T ss_dssp HHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHHhccChHHHHHHHHH
Confidence 9999999863114444444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.8e-10 Score=91.33 Aligned_cols=152 Identities=12% Similarity=0.036 Sum_probs=123.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG-LCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~ 79 (487)
.|++++|+..|+++++.. |.+...+..+..++...|++++|+..|+++.... |+...+...... +...+....|+.
T Consensus 19 ~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~a~~ 95 (176)
T 2r5s_A 19 QGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAESPELK 95 (176)
T ss_dssp TTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhcccchHHH
Confidence 489999999999999886 4578899999999999999999999999998764 355444333222 223334445789
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-CHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP-NVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
.+++..+.. |.+...+..+..++...|++++|...|+++.+....+ +...+..+..++...|+.++|...|+
T Consensus 96 ~~~~al~~~-------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 96 RLEQELAAN-------PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 999998875 6678999999999999999999999999998875332 35688899999999999999999998
Q ss_pred HHHH
Q 011362 159 EMMD 162 (487)
Q Consensus 159 ~~~~ 162 (487)
+...
T Consensus 169 ~al~ 172 (176)
T 2r5s_A 169 RQLY 172 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-09 Score=87.43 Aligned_cols=176 Identities=10% Similarity=-0.055 Sum_probs=110.4
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC----Chh
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG----FVD 116 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~ 116 (487)
+|+++|++..+. -++.++..+...|...+++++|+.+|++..+.+ ++..+..|...|.. + +++
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---------~~~a~~~lg~~y~~-~g~~~~~~ 70 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---------DGDALALLAQLKIR-NPQQADYP 70 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHTTS-STTSCCHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHc-CCCCCCHH
Confidence 456667666664 356666677777777777777777777776643 45666666666666 5 677
Q ss_pred HHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCC-CChhhHHHHHHHHHh----CCChHH
Q 011362 117 KAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQGVQ-PNVVTFNVIMDELCK----NGKMDE 187 (487)
Q Consensus 117 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~ 187 (487)
+|.++|++..+.| +...+..|...|.. .+++++|+.+|++..+.+.. .....+..|...|.. .+++++
T Consensus 71 ~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~ 147 (212)
T 3rjv_A 71 QARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVK 147 (212)
T ss_dssp HHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHH
Confidence 7777777776654 45666666666665 66777777777777665421 014555666666666 566777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-C-----CHhHHHHHHHHHHHcC
Q 011362 188 ASRLLDLMIQHGVRPDAFTYNTLLDGFCLT-G-----RVNHAKELFVSMESMG 234 (487)
Q Consensus 188 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~ 234 (487)
|..+|++..+. ..+...+..|...|... | ++++|...|+...+.|
T Consensus 148 A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 148 ASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 77777766655 12333445555555432 2 6666666666666554
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.2e-09 Score=80.67 Aligned_cols=129 Identities=12% Similarity=0.200 Sum_probs=73.9
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
.+..++..+...|++++|..+++++.+.. +.+...+..++..+...|++++|...++++...+ +.+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 74 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHH
Confidence 34455566666666666666666665543 3445556666666666666666666666665542 224455555
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 140 VIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 140 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
+...+...|++++|.+.++++..... .+...+..+...+...|++++|...++.+..
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 66666666666666666666555422 2344455555555556666666655555544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-09 Score=87.93 Aligned_cols=174 Identities=9% Similarity=0.024 Sum_probs=115.7
Q ss_pred CCccchHHHHHHHHHhCCCCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-CH-HHHHHHHHHHHc------
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD--AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP-DV-FTYTTLVNGLCR------ 70 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~-~~~~~l~~~~~~------ 70 (487)
.|++++|+..|+.++...+... ..++..++.+|.+.|++++|+..|+++.+..... .. .++..+..++..
T Consensus 17 ~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~ 96 (225)
T 2yhc_A 17 DGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSAL 96 (225)
T ss_dssp HTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhh
Confidence 3899999999999998753321 3578889999999999999999999999874221 11 245555555543
Q ss_pred ------------cCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 011362 71 ------------TSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYT 138 (487)
Q Consensus 71 ------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 138 (487)
.|++++|+..|+++.+.. |.+...+....... .+...+ .....
T Consensus 97 ~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l~----------~~~~~~--------~~~~~ 151 (225)
T 2yhc_A 97 QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRLV----------FLKDRL--------AKYEY 151 (225)
T ss_dssp -----------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHHH----------HHHHHH--------HHHHH
T ss_pred hhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHHH----------HHHHHH--------HHHHH
Confidence 678999999999999876 33333332211110 000000 11123
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASRLLDLMIQHG 199 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 199 (487)
.+...+.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 456677778888888888888776532211 2356667778888888888888888777653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=3e-09 Score=91.51 Aligned_cols=165 Identities=13% Similarity=-0.002 Sum_probs=87.2
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHH-H
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNV-I 175 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 175 (487)
.+...+..+...+.+.|++++|...|+++.... +-+...+..+...+...|++++|...++++.... |+...... .
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 344455555555556666666666666655542 2244555556666666666666666666554432 22222111 1
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCC--HhhHHHHHHHHHccC
Q 011362 176 MDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHT--VFSYSILINGYCKNK 253 (487)
Q Consensus 176 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~ 253 (487)
...+...++.++|...++...... +.+...+..+...+...|++++|...|.++.... +.+ ...+..++..+...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcC
Confidence 122444455555555555555542 2245555556666666666666666666665543 111 445566666666666
Q ss_pred CHhHHHHHHHHHH
Q 011362 254 EIEGALSLYSEML 266 (487)
Q Consensus 254 ~~~~a~~~~~~~~ 266 (487)
+.+.|...|++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 6666666655543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-09 Score=94.23 Aligned_cols=193 Identities=10% Similarity=-0.029 Sum_probs=95.8
Q ss_pred CccchHHHHHHHHHhCCC------CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCC---CC--CHHHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCF------TPD----AVTFTSLIKGLCAESRIMEAAALFTKLRVFGC---EP--DVFTYTTLVN 66 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~ 66 (487)
|++++|.++++++.+... .++ ...|...+..|...|++++|...|.++..... .+ -..++..+..
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 84 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGM 84 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 678899999998876421 122 22455555556666666666666666544310 00 1224555566
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCC-CHhhHHHHH
Q 011362 67 GLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN----IKP-NVVTYTSVI 141 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~ 141 (487)
+|...|++++|+..|++..+.....+. ......++..+..+|.. |++++|+..|++..... ..+ ...++..+.
T Consensus 85 ~~~~~g~~~~A~~~~~~Al~l~~~~g~-~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 162 (307)
T 2ifu_A 85 MLKDLQRMPEAVQYIEKASVMYVENGT-PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKAS 162 (307)
T ss_dssp HHHHTTCGGGGHHHHHHHHHHHHTTTC-HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 666666666666666655432100000 00113445555555555 66666666665554321 000 123455555
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCC----CCC-hhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011362 142 RGFCYAKDWNEAKRLFIEMMDQGV----QPN-VVTFNVIMDELCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 196 (487)
.++...|++++|+..|++...... .+. ...+..+..++...|++++|...|++..
T Consensus 163 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 163 RLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 555556666666655555544210 000 1133334444445555555555555554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=3.8e-09 Score=100.79 Aligned_cols=155 Identities=9% Similarity=-0.060 Sum_probs=120.5
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCCh
Q 011362 36 ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFV 115 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 115 (487)
.|++++|++.|+++.+.. +.+...+..+...+...|++++|++.+++..+.. +.+...+..+..++...|++
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~ 73 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-------PGHPEAVARLGRVRWTQQRH 73 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-------TTCHHHHHHHHHHHHHTTCH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCCH
Confidence 478999999999998764 4567889999999999999999999999999976 66788999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC---CChHHHHHHH
Q 011362 116 DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN---GKMDEASRLL 192 (487)
Q Consensus 116 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 192 (487)
++|.+.+++..+.. +.+...+..+..++...|++++|.+.|++..+.... +...+..+..++... |++++|...+
T Consensus 74 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 74 AEAAVLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 99999999998874 346788999999999999999999999999887433 567788899999999 9999999999
Q ss_pred HHHHHCCC
Q 011362 193 DLMIQHGV 200 (487)
Q Consensus 193 ~~~~~~~~ 200 (487)
++..+.+.
T Consensus 152 ~~al~~~p 159 (568)
T 2vsy_A 152 RAAVAQGV 159 (568)
T ss_dssp HHHHHHTC
T ss_pred HHHHhcCC
Confidence 99988643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.4e-08 Score=81.76 Aligned_cols=129 Identities=10% Similarity=-0.029 Sum_probs=108.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..+...+...|++++|+..|+++. .|+..++..++..+...|++++|+..|++..+.. +.+...+..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchHHHHH
Confidence 45667888889999999999998874 5678889999999999999999999999998875 567888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCC--------------C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIK--------------P-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
+..++...|++++|.+.|++..+.... | ....+..+..++...|++++|...|++..+..
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 999999999999999999998875321 0 12677888889999999999999999988764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.2e-09 Score=82.91 Aligned_cols=118 Identities=8% Similarity=0.043 Sum_probs=83.7
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-HHccCCh--HHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG-LCRTSHT--IVAL 78 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~a~ 78 (487)
|++++|+..++.++... |.+..+|..+...|...|++++|+..|+++.+.. +.+...+..+..+ +...|++ ++|+
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~ 101 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTR 101 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHH
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHH
Confidence 66777777777777765 4467777777777778888888888887777664 4456666666766 6677777 7777
Q ss_pred HHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 79 NLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..++++.+.. |.+...+..+..++...|++++|...|+++.+.
T Consensus 102 ~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 102 AMIDKALALD-------SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 7777777754 455667777777777777777777777777765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=75.23 Aligned_cols=109 Identities=11% Similarity=-0.034 Sum_probs=76.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+......|.+.|++++|++.|+++++.. +.+..+|..+..++...|++++|+..|++..+.+ |.+...|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~ 84 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-------SKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-------hhhhHHH
Confidence 4556667777777777777777777777664 4566677777777777777777777777777765 5566777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV 140 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 140 (487)
..+..++...|++++|++.|++..+.. |-+...+..+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 777777777777777777777777653 2244444433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-08 Score=89.26 Aligned_cols=125 Identities=12% Similarity=0.033 Sum_probs=57.1
Q ss_pred hcCCHHHHHHHHHHHHhcCC------CCCH----HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 35 AESRIMEAAALFTKLRVFGC------EPDV----FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~------~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
..|++++|.+++++..+... .++. ..|...+..|...|++++|...|.+........+. ......+|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~ 81 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRS-LFHAAKAFEQ 81 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHH
Confidence 35677888888887765311 1121 12344444555555666655555554432100000 0011234555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHH
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDK----NIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMM 161 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 161 (487)
+..+|...|++++|+..|++.... |-+. ...++..+..+|.. |++++|+..|++..
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al 142 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAA 142 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHH
Confidence 555555555555555555544321 1000 12234444444444 55555555554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=3.3e-07 Score=79.19 Aligned_cols=171 Identities=8% Similarity=-0.022 Sum_probs=132.9
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-C-ChHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAES-RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT-S-HTIVALN 79 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~a~~ 79 (487)
..++|+++++.++..+ |-+..+|+.-..++...| .+++++.+++.++... +-+..+|+.-..++... + +++++++
T Consensus 69 ~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 69 KSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 4578999999999997 447888998888888888 5999999999999876 56777888777666665 6 8899999
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC--
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVD--------KAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD-- 149 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 149 (487)
+++++.+.+ +.+..+|+--.-++.+.|.++ ++++.++++.+... -|..+|+....++.+.+.
T Consensus 147 ~~~k~L~~d-------pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 147 YIHGSLLPD-------PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp HHHHHTSSC-------TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCC
T ss_pred HHHHHHHhC-------CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccc
Confidence 999999987 677888877666666666666 88889998888753 478888888888777765
Q ss_pred -----hhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 150 -----WNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 150 -----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
++++++.+++++...+. |...|+.+-..+.+.|.
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred cchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCC
Confidence 57788888887776433 66667665555555554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.97 E-value=3e-08 Score=77.47 Aligned_cols=131 Identities=9% Similarity=-0.060 Sum_probs=97.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|+..+++..+.. +.+...+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~ 84 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGY 84 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cccHHHH
Confidence 4456777888888888888888888888764 4567778888888888888888888888888765 5567788
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHH--HHHHHHhcCChhhHHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTS--VIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
..+..++...|++++|...|++..... +.+...+.. ++..+...|++++|+..+.....
T Consensus 85 ~~~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 85 YRRAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888888888888888888888887653 224444433 33336677888888887776543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-08 Score=77.17 Aligned_cols=99 Identities=15% Similarity=-0.016 Sum_probs=71.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...+..+...+.+.|++++|+..|+++.... +.+...|..+..++...|++++|+..|+++.+.. |.++..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-------P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-------KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------SSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------CCCcHH
Confidence 35566667777777777777777777777764 4556677777777777777777777777777765 556677
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|..+..+|...|++++|...|++..+.
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777777665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=95.48 Aligned_cols=150 Identities=8% Similarity=-0.061 Sum_probs=108.5
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD--------------VFTYTTLVNGL 68 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 68 (487)
++++|+..++..+... +.+...+..+...+.+.|++++|+..|+++++...... ..++..+..++
T Consensus 128 ~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666665555442 22567788899999999999999999999988752221 46777778888
Q ss_pred HccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011362 69 CRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK 148 (487)
Q Consensus 69 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 148 (487)
.+.|++++|+..++++.+.. |.+...+..+..+|...|++++|+..|++..+.. +.+..++..+..++...|
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~ 278 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 278 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 88888888888888887765 5567777888888888888888888888877653 335667777777777777
Q ss_pred ChhhH-HHHHHHHH
Q 011362 149 DWNEA-KRLFIEMM 161 (487)
Q Consensus 149 ~~~~a-~~~~~~~~ 161 (487)
+.++| ...|..|.
T Consensus 279 ~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 279 RQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777 34555553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=1.1e-06 Score=75.88 Aligned_cols=175 Identities=11% Similarity=-0.062 Sum_probs=129.5
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
...+..++|++++++++..+ +.+..+|+.-..++...| .+++++.+++.+...+ |.+..+|+.-..++...
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-------PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-------LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-------CCCHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHh
Confidence 34445578999999999885 556677887777777788 5999999999999887 67788888777777766
Q ss_pred -C-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChh--------hHHHHHHHHHHcCCCCChhhHHHHHHHHHhC
Q 011362 113 -G-FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWN--------EAKRLFIEMMDQGVQPNVVTFNVIMDELCKN 182 (487)
Q Consensus 113 -g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (487)
+ +++++++.++.+.+.. +-+..+|+.-..++.+.+.++ ++++.++++++..+. |...|+.....+.+.
T Consensus 137 ~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSR 214 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTS
T ss_pred cCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhc
Confidence 6 8899999999998875 347778877666666666665 888888888887544 677777777777776
Q ss_pred CC-------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC
Q 011362 183 GK-------MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGR 219 (487)
Q Consensus 183 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (487)
+. ++++++.++.++.... -|...|+.+-..+.+.|.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred cccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCC
Confidence 65 5777777777776533 366777666555555554
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-09 Score=80.36 Aligned_cols=112 Identities=13% Similarity=0.009 Sum_probs=93.7
Q ss_pred HHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 8 FVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
-..|++++... |.+...+..+...+...|++++|+..|+++.... +.+...|..+..++...|++++|+..|+++...
T Consensus 7 ~~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34577777764 3467778888899999999999999999988875 567788888999999999999999999999887
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 88 NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
. |.+...+..+..++...|++++|...|++..+.
T Consensus 85 ~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 D-------IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp S-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5 567788888999999999999999999888765
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.7e-08 Score=80.64 Aligned_cols=124 Identities=12% Similarity=-0.068 Sum_probs=105.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.++ +|+..+|..+..++...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..
T Consensus 19 ~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~ 93 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIKD 93 (213)
T ss_dssp TTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHHHHHHH
Confidence 488999999999885 4588899999999999999999999999999875 56778899999999999999999999
Q ss_pred HHHHHhCCCCCcc---------ccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 011362 81 FEEMANGNGEFGV---------VCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKN 129 (487)
Q Consensus 81 ~~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 129 (487)
|+++.+..+.... ..+.....+..+..++...|++++|.+.|++..+..
T Consensus 94 ~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999986532110 012234889999999999999999999999998864
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.94 E-value=2e-08 Score=83.77 Aligned_cols=185 Identities=7% Similarity=-0.106 Sum_probs=121.8
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHH-------HHHHHhcCCHHHHHHHHHHHHhcCCCCC-----------------
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSL-------IKGLCAESRIMEAAALFTKLRVFGCEPD----------------- 57 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------- 57 (487)
++.++|++.|.++...+ |-....|..+ ...+...++..+++..+.+.... .|+
T Consensus 20 ~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l--~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI--SMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC--CGGGGCCEEECCTTTCCCEE
T ss_pred CCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC--ChhhhhhhhccCCccccccc
Confidence 67788888888888886 4468888877 56666666777777766665542 111
Q ss_pred -----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011362 58 -----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP 132 (487)
Q Consensus 58 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 132 (487)
..........+...|++++|.++|+.+...+ |-+. ....+...+.+.+++++|+..|+...... .|
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~-------p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~ 167 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG-------SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DK 167 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT-------CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-------CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cc
Confidence 1233445666777888888888887776644 2233 55566667777888888888887554431 11
Q ss_pred C--HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 011362 133 N--VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN--VVTFNVIMDELCKNGKMDEASRLLDLMIQH 198 (487)
Q Consensus 133 ~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 198 (487)
. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 168 ~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 1 23566677777788888888888887764322132 234455666777778888888888777765
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.4e-08 Score=74.98 Aligned_cols=99 Identities=10% Similarity=0.021 Sum_probs=87.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|++.|+++++.+ |.+..+|..+..+|.+.|++++|+..|+++++.+ +.+...|..++.++...|++++|++.
T Consensus 26 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 103 (126)
T 4gco_A 26 KGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVAMREWSKAQRA 103 (126)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHHCCCHHHHHHH
Confidence 489999999999999986 5589999999999999999999999999999886 56788899999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|++..+.. |.+...+..+..+
T Consensus 104 ~~~al~l~-------P~~~~a~~~l~~~ 124 (126)
T 4gco_A 104 YEDALQVD-------PSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHH
T ss_pred HHHHHHHC-------cCCHHHHHHHHHh
Confidence 99999976 5566666665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.93 E-value=3.3e-07 Score=79.16 Aligned_cols=161 Identities=9% Similarity=0.017 Sum_probs=77.6
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCccccccch----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----Hh
Q 011362 65 VNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT----VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIK-PN----VV 135 (487)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~ 135 (487)
+..+...|++++|..++++..+... ..++. ..+..+...+...|++++|+..+++....... ++ ..
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~-----~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEE-----YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC-----CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhcccc-----CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4555666666677666666665431 01111 12223455555556666666666666553211 11 12
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc-----CCCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQ-----GVQP-NVVTFNVIMDELCKNGKMDEASRLLDLMIQH----GVRP-DA 204 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 204 (487)
+++.+..+|...|++++|+..|+++.+. +..+ ...++..+...|.+.|++++|+..+++..+. +..+ -.
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~ 236 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 4555666666666666666666665531 0011 1123444555555555555555555544431 1111 13
Q ss_pred HHHHHHHHHHHcCCC-HhHHHHHHHHH
Q 011362 205 FTYNTLLDGFCLTGR-VNHAKELFVSM 230 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~-~~~a~~~~~~~ 230 (487)
.++..+..++...|+ +++|.+.+++.
T Consensus 237 ~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 344444455555552 35555444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.92 E-value=5e-08 Score=71.87 Aligned_cols=114 Identities=13% Similarity=0.109 Sum_probs=81.3
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
..+|..+...+...|++++|++.++++.... +.+..++..+...+...|++++|+.+++++.+.. +.+...+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 80 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEAW 80 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-------CccHHHH
Confidence 5667777788888888888888888877764 4456677777778888888888888888877654 4566777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFC 145 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 145 (487)
..+..++...|++++|...++++.+.. +.+...+..+...+.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 777777778888888888887776653 234445555554443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.92 E-value=3.5e-07 Score=78.97 Aligned_cols=163 Identities=9% Similarity=-0.049 Sum_probs=116.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCcH----HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-CC----hHhHHH
Q 011362 280 LFVGLFEIHQVERAFKLFDEMQRNGV-AADT----WTYRTFIDGLCKNGYIVEAVELFHTLRILKCE-FD----IRAYNS 349 (487)
Q Consensus 280 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ 349 (487)
.+..+...+++++|...+++..+... .|+. ..+..+...+...+++++|...++++...... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667778888888888888776421 1221 12334666677778899999999888864322 22 236888
Q ss_pred HHHHHHhcCCHHHHHHHHHhccC----C-CCCCc-HHHHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 011362 350 LIDGLCKSGRLEIALELFRSLPC----G-VLVPN-VVTYSIMIGGLCNDGQMDKARDLFLDMEEN----AVVPN-VITFD 418 (487)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~ 418 (487)
+..+|...|++++|...++++.+ . +..+. ..++..++.+|...|++++|...+++..+. +..+. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 88889999999999998888763 1 11222 347888999999999999999999888642 22222 56788
Q ss_pred HHHHHHHhcCC-hhHHHHHHHHHHh
Q 011362 419 MLIRGFIRINE-PSKVIELLHKMKE 442 (487)
Q Consensus 419 ~l~~~~~~~g~-~~~a~~~~~~~~~ 442 (487)
.+..++.+.|+ +++|.+.++++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 88899999994 6999999988864
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.7e-08 Score=73.60 Aligned_cols=119 Identities=13% Similarity=-0.025 Sum_probs=83.0
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
.+...|..+...+...|++++|+..|+++.+.. +.+..++..+..++...|++++|+..++++.+.. +.+..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~ 85 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-------PTFIK 85 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-------TTCHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------CCchH
Confidence 346667777778888888888888888877654 4456677777777778888888888888777754 45667
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK 148 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 148 (487)
.+..+..++...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 86 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 86 GYTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77777777777788888887777776652 223445555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-08 Score=81.50 Aligned_cols=161 Identities=11% Similarity=-0.099 Sum_probs=114.6
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHccCChH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVF----GCE-PDVFTYTTLVNGLCRTSHTI 75 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~ 75 (487)
.|++++|.+.++.+.. .+.....++..+...+...|++++|+..+++.... +.. ....++..+...+...|+++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 4889999996666654 33345778999999999999999999999998763 111 23446788889999999999
Q ss_pred HHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCCh
Q 011362 76 VALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----NIKP-NVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 76 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~ 150 (487)
+|...+++..+.....+.........+..+..++...|++++|...+++.... +.+. ...++..+..++...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 99999998776411000000123456788888899999999999998887642 1110 122456777788888888
Q ss_pred hhHHHHHHHHHH
Q 011362 151 NEAKRLFIEMMD 162 (487)
Q Consensus 151 ~~a~~~~~~~~~ 162 (487)
++|.+.+++..+
T Consensus 164 ~~A~~~~~~al~ 175 (203)
T 3gw4_A 164 LEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-08 Score=73.19 Aligned_cols=120 Identities=8% Similarity=-0.038 Sum_probs=84.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...+..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|+..+++..+.. +.+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~ 82 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-------PAYSKA 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-------ccCHHH
Confidence 45566777777778888888888888877664 4456677777777778888888888888777654 455667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCCh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDW 150 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 150 (487)
+..+..++...|++++|...|++..+.. +.+...+..+..++...|++
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 7777777777788888887777776653 23555666666666665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=3.9e-09 Score=80.37 Aligned_cols=99 Identities=10% Similarity=-0.099 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
+...+..+...+.+.|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++..... |.++..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-------P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~ 106 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-------FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTP 106 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHH
Confidence 34456667777777777777777777777765 5567777777777777777777777777776653 235666
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
|..+..+|...|++++|+..|++..+.
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777777777777765
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.89 E-value=3.3e-08 Score=80.21 Aligned_cols=163 Identities=12% Similarity=-0.046 Sum_probs=110.2
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
+...|++++|.+.++.+... ......++..+...+...|++++|...+++........+. .+.....+..+...+...
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~l~~~~~~~ 79 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-HTAEHRALHQVGMVERMA 79 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHc
Confidence 35689999999966655442 2245667888999999999999999999988762211000 134566788889999999
Q ss_pred CChhHHHHHHHHHHhC----CCCC--CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC-CC----hhhHHHHHHHHHh
Q 011362 113 GFVDKAKELLLQMKDK----NIKP--NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-PN----VVTFNVIMDELCK 181 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~ 181 (487)
|++++|.+.+++.... +..+ ....+..+...+...|++++|...+++....... .+ ..++..+...+..
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999887653 2111 2345777888888899999999988887643110 11 2234566667777
Q ss_pred CCChHHHHHHHHHHHH
Q 011362 182 NGKMDEASRLLDLMIQ 197 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~ 197 (487)
.|++++|...+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 8888888777776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-08 Score=84.96 Aligned_cols=96 Identities=14% Similarity=-0.044 Sum_probs=43.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..++++.+.. |.+...+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 75 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHH
Confidence 3344444444444455555555554444432 2234444444444444444444444444444433 3333444
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMK 126 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~ 126 (487)
..+..++...|++++|...|++..
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al 99 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444444444444433
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.86 E-value=8.9e-08 Score=74.73 Aligned_cols=129 Identities=9% Similarity=-0.082 Sum_probs=93.4
Q ss_pred HhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHH
Q 011362 310 WTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGL 389 (487)
Q Consensus 310 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 389 (487)
..+..+...+...|++++|...++...... +.+..++..+...+...|++++|...+++..... +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666677778888888888888877664 4567777788888888888888888888777653 44567788888888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHHH
Q 011362 390 CNDGQMDKARDLFLDMEENAVVPNVITFDM--LIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
...|++++|...++++.+... .+...+.. .+..+...|++++|...+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888888888888877532 24444433 3333667788888888877654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.4e-08 Score=85.47 Aligned_cols=197 Identities=11% Similarity=-0.017 Sum_probs=137.1
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 011362 56 PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV 135 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 135 (487)
.+...+..++..+...|++++|+..|+++.+.. |.+...+..+..++...|++++|...+++..+.. +.+..
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 73 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 73 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHH
Confidence 355678888999999999999999999999875 5678899999999999999999999999998874 34678
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFC 215 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 215 (487)
.+..+..++...|++++|...|++..+.... +...+...+....+ ...... +..........+......+...
T Consensus 74 ~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l-- 146 (281)
T 2c2l_A 74 AHFFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL-- 146 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--
Confidence 8999999999999999999999998775321 11112112222111 111122 2223333344454444444332
Q ss_pred cCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-CCHhHHHHHHHHHHHC
Q 011362 216 LTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKN-KEIEGALSLYSEMLSK 268 (487)
Q Consensus 216 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 268 (487)
..|++++|.+.++...+.. +.+......+...+.+. +.+++|.++|.++.+.
T Consensus 147 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 IAAERERELEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2688999999988887663 33444444455555554 6788999999887653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.5e-07 Score=78.29 Aligned_cols=95 Identities=7% Similarity=0.005 Sum_probs=39.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH---cCCC-C--ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC----CCC-CH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMD---QGVQ-P--NVVTFNVIMDELCKNGKMDEASRLLDLMIQHG----VRP-DA 204 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~ 204 (487)
+++.+...|...|++++|+..|+++.+ .... + ...++..+...|...|++++|+..+++..+.. ... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 444444444444444444444444431 1000 0 01234444444455555555555444443211 000 13
Q ss_pred HHHHHHHHHHHcCCCHhHH-HHHHHHH
Q 011362 205 FTYNTLLDGFCLTGRVNHA-KELFVSM 230 (487)
Q Consensus 205 ~~~~~l~~~~~~~~~~~~a-~~~~~~~ 230 (487)
.++..+..++...|++++| ...+++.
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3444445555555555555 4434443
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.85 E-value=3.5e-07 Score=78.96 Aligned_cols=171 Identities=11% Similarity=0.015 Sum_probs=127.0
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----HhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC---CC
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPN-----VVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ---PN 168 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~ 168 (487)
.....+...+..+...|++++|.+.++...+.....+ ...+..+...+...|++++|+..+++....... +.
T Consensus 73 ~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 152 (293)
T 2qfc_A 73 ERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT
T ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH
Confidence 3456666777788888888888888887766543221 123445667778888999999999988754221 11
Q ss_pred --hhhHHHHHHHHHhCCChHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC----CC
Q 011362 169 --VVTFNVIMDELCKNGKMDEASRLLDLMIQ---H-GVRP--DAFTYNTLLDGFCLTGRVNHAKELFVSMESMG----CK 236 (487)
Q Consensus 169 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~ 236 (487)
..+++.+...|...|++++|...++++.+ . +..+ ...++..+...|...|++++|...+++..+.. ..
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~ 232 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcH
Confidence 34788899999999999999999998873 2 1111 12588899999999999999999999876542 11
Q ss_pred C-CHhhHHHHHHHHHccCCHhHH-HHHHHHHHH
Q 011362 237 H-TVFSYSILINGYCKNKEIEGA-LSLYSEMLS 267 (487)
Q Consensus 237 ~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 267 (487)
. -..++..+..+|.+.|++++| ...+++...
T Consensus 233 ~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp SSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 1 156788999999999999999 777887664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=2.5e-07 Score=77.25 Aligned_cols=196 Identities=11% Similarity=-0.043 Sum_probs=143.5
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCHHHHHHH-------HHHHHccCChHHHHHHHHHHHhCCCC-----C---c----cc-
Q 011362 35 AESRIMEAAALFTKLRVFGCEPDVFTYTTL-------VNGLCRTSHTIVALNLFEEMANGNGE-----F---G----VV- 94 (487)
Q Consensus 35 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~-----~---~----~~- 94 (487)
..++...|.+.|.++.+.. +.....|..+ ..++.+.++..+++..+.......+. + | +.
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 6899999999999999985 5566778877 56666666677777777766653211 0 0 00
Q ss_pred -cccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--hhh
Q 011362 95 -CEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPN--VVT 171 (487)
Q Consensus 95 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 171 (487)
+.........+...+...|++++|.++|+.+...+ |+......+...+.+.++|++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 11123456677888999999999999999887654 433366667778899999999999998654431 111 235
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHcCCCHhHHHHHHHHHHHcC
Q 011362 172 FNVIMDELCKNGKMDEASRLLDLMIQHGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSMESMG 234 (487)
Q Consensus 172 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 234 (487)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++....
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 67788899999999999999999875433243 3456677788889999999999999998874
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.6e-08 Score=76.46 Aligned_cols=123 Identities=7% Similarity=0.048 Sum_probs=95.4
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH-HHh
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG-LCK 111 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 111 (487)
+...|++++|+..+++..+.. +.+...+..+...+...|++++|+..|+++.+.. |.+...+..+..+ +..
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la~~l~~~ 91 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-------GENAELYAALATVLYYQ 91 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------CSCHHHHHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHh
Confidence 345788888988888888765 5567788888888899999999999999888765 5567788888888 778
Q ss_pred cCCh--hHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcC
Q 011362 112 EGFV--DKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 112 ~g~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 164 (487)
.|++ ++|...++++.... +.+...+..+..++...|++++|...|+++.+..
T Consensus 92 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 92 ASQHMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp TTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred cCCcchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 8888 89999998887763 3356778888888888999999999998888763
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=2.4e-08 Score=75.69 Aligned_cols=111 Identities=12% Similarity=-0.047 Sum_probs=89.6
Q ss_pred HHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 9 VVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..|+.++... |.+...+..+...+...|++++|+..|+++.... +.+...|..+..++...|++++|+..|+++....
T Consensus 5 ~~l~~al~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 82 (142)
T 2xcb_A 5 GTLAMLRGLS-EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD 82 (142)
T ss_dssp ----CCTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHcCC-HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3455555553 3356677778888999999999999999998875 5677788889999999999999999999998876
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|.+...+..+..++...|++++|...|+...+.
T Consensus 83 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 83 -------INEPRFPFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp -------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 667788888999999999999999999988765
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.7e-08 Score=75.87 Aligned_cols=111 Identities=8% Similarity=-0.075 Sum_probs=85.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHH
Q 011362 44 ALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLL 123 (487)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 123 (487)
..|+++.... +.+...+..+...+...|++++|+..|+++.... |.+...|..+..++...|++++|+..|+
T Consensus 8 ~~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 79 (148)
T 2vgx_A 8 GTIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-------HYDSRFFLGLGACRQAMGQYDLAIHSYS 79 (148)
T ss_dssp CSHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-------cccHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 3455555542 3345567777888888888888888888888765 5677888888888888888888888888
Q ss_pred HHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 124 QMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 124 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
+..... +.+...+..+..++...|++++|...|++..+.
T Consensus 80 ~al~l~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 80 YGAVMD-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcC-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 887763 336677888888888888888888888888765
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=1e-07 Score=71.08 Aligned_cols=119 Identities=6% Similarity=-0.066 Sum_probs=79.2
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 011362 342 FDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLI 421 (487)
Q Consensus 342 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 421 (487)
.+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345566667777777777777777777776542 3356667777777777777777777777777643 22566677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 422 RGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
.++...|++++|.+.+++..+.. +.+...+..+..++.+.|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 77777777777777777777643 233455555655555544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=5.6e-06 Score=71.25 Aligned_cols=225 Identities=9% Similarity=-0.065 Sum_probs=140.4
Q ss_pred HHhcCCHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCC----------hHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 33 LCAESRIM-EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSH----------TIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 33 ~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
..+.|+++ +|+.+++.++..+ +.+..+|+.-..++...+. +++++.+++.+...+ |.+..+
T Consensus 39 ~~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-------PKny~a 110 (331)
T 3dss_A 39 KRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-------PKSYGT 110 (331)
T ss_dssp HHHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-------CCCHHH
Confidence 34556655 6778887777764 3444555544433333332 567778888777765 566677
Q ss_pred HHHHHHHHHhcC--ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCCChhhHHHHHHH
Q 011362 102 YTTIIDGLCKEG--FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKD-WNEAKRLFIEMMDQGVQPNVVTFNVIMDE 178 (487)
Q Consensus 102 ~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 178 (487)
|+.-..++...| .++++++.++.+.+.. +-|..+|+.-..++...|. ++++++.++++++..+. |...|+.....
T Consensus 111 W~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~l 188 (331)
T 3dss_A 111 WHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCL 188 (331)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 776666666666 3677888888777764 3366777776666666676 47778888777776544 56666655544
Q ss_pred HHhC--------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC-----------CCHhHHHHHHHHHHHc
Q 011362 179 LCKN--------------GKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLT-----------GRVNHAKELFVSMESM 233 (487)
Q Consensus 179 ~~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~ 233 (487)
+... +.++++++.+.......+ -|...|+-+-..+.+. +.++++++.++++.+.
T Consensus 189 l~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P-~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~ 267 (331)
T 3dss_A 189 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL 267 (331)
T ss_dssp HHHHSCCC------CCCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh
Confidence 4433 346777788777776533 3666666544444443 3467888888888876
Q ss_pred CCCCCHhhHHHHHHH---HHccCCHhHHHHHHHHHHHCC
Q 011362 234 GCKHTVFSYSILING---YCKNKEIEGALSLYSEMLSKG 269 (487)
Q Consensus 234 ~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 269 (487)
. |.+...+..++.. ....+..+++...+.++.+.+
T Consensus 268 ~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 268 E-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp C-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred C-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4 3333333333222 224567778888888888753
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=6.4e-08 Score=71.52 Aligned_cols=113 Identities=8% Similarity=-0.004 Sum_probs=86.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
..++..++..+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.+++..+..+........-..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4567889999999999999999999999885 567788999999999999999999999998875421100001112467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYT 138 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 138 (487)
..+..++...|++++|++.|++.+.. .|+.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~ 120 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVK 120 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHH
Confidence 77888888888888888888887764 35655443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.81 E-value=1.4e-07 Score=69.47 Aligned_cols=114 Identities=16% Similarity=0.153 Sum_probs=65.1
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 011362 344 IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRG 423 (487)
Q Consensus 344 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 423 (487)
...+..+...+...|++++|...++++.... +.+..++..++.++...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3445555556666666666666666655432 3344556666666666666666666666665542 2245556666666
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 424 FIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (487)
+...|++++|...++++.+.. +.+...+..+..++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 666666666666666666543 233444444444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.80 E-value=1.4e-07 Score=69.65 Aligned_cols=98 Identities=14% Similarity=-0.001 Sum_probs=74.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...|..+...+...|++++|+..|++.++.. +.+...+..+..++...|++++|+..+++..+.. |.+...+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~ 75 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-------PNFVRAY 75 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCcHHHH
Confidence 4556777777888888888888888877764 4566777778888888888888888888877765 5567777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..+..++...|++++|...|++..+.
T Consensus 76 ~~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 76 IRKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 77888888888888888888777664
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=9.6e-09 Score=83.07 Aligned_cols=120 Identities=14% Similarity=0.025 Sum_probs=57.3
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH----------------HHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV----------------FTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
..+..+...+...|++++|+..|+++..... .+. .++..+..++...|++++|+..++++.+.
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555555566666666666666554321 111 34444445555555555555555555543
Q ss_pred CCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhh
Q 011362 88 NGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNE 152 (487)
Q Consensus 88 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 152 (487)
. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++..+
T Consensus 118 ~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~ 174 (198)
T 2fbn_A 118 D-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARK 174 (198)
T ss_dssp S-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC
T ss_pred C-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 3 3344445555555555555555555555544432 1233344444444444433333
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.8e-07 Score=69.48 Aligned_cols=114 Identities=11% Similarity=-0.018 Sum_probs=47.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIR 426 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (487)
+..+...+...|++++|...++++.... +.+...+..+..++...|++++|...+++..+.. +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3333444444444444444444433321 2233344444444444444444444444444321 1123344444444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 427 INEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 427 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
.|++++|...+++..+.. +.+...+..+..++.+.|
T Consensus 93 ~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLR 128 (131)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHh
Confidence 444444444444444432 223333444444444433
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=4.2e-07 Score=66.00 Aligned_cols=110 Identities=8% Similarity=-0.054 Sum_probs=78.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
+..+..++..+...|++++|+..|+++.... +.+...+..+...+...|++++|...+++..+.. |.+...+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 75 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-------cccHHHH
Confidence 4556777777888888888888888877764 4466677777778888888888888888877754 4556777
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVI 141 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 141 (487)
..+..++...|++++|.+.+++..+.+ +.+...+..+.
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 113 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQ 113 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 777778888888888888887777653 22444444433
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=67.85 Aligned_cols=99 Identities=14% Similarity=0.010 Sum_probs=70.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc--ch
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP--NT 99 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~~ 99 (487)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+..++...|++++|+..+++..+.. +. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-------EDEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------CCTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------cccchH
Confidence 45566667777777777777777777777664 4456667777777777777777777777777654 34 56
Q ss_pred HHHHHHHHHHHhc-CChhHHHHHHHHHHhC
Q 011362 100 VTYTTIIDGLCKE-GFVDKAKELLLQMKDK 128 (487)
Q Consensus 100 ~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 128 (487)
..+..+..++... |++++|.+.++.....
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 6777777777777 7777777777777665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-05 Score=68.58 Aligned_cols=237 Identities=9% Similarity=0.012 Sum_probs=166.1
Q ss_pred HccCChH-HHHHHHHHHHhCCCCCccccccchHHHHHHHH-HHHh-------cCChhHHHHHHHHHHhCCCCCCHhhHHH
Q 011362 69 CRTSHTI-VALNLFEEMANGNGEFGVVCEPNTVTYTTIID-GLCK-------EGFVDKAKELLLQMKDKNIKPNVVTYTS 139 (487)
Q Consensus 69 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~-------~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 139 (487)
.+.|.+. +|+.+++.+...+|+ ..++..+...+- .... ...+++++.+++.+.... +-+..+|+.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-----~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~h 113 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-----FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHH 113 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-----CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-----hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3455554 789999999888864 344555443322 2222 235789999999998874 347888888
Q ss_pred HHHHHHhcC--ChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 140 VIRGFCYAK--DWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK-MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 140 l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
-..++...+ .+++++..++.+.+..+. +...|+.-.-.+...|. +++++..++.+++..+. |...|+.....+..
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHH
Confidence 877777777 489999999999987544 77778777777778888 58999999999987544 77777776665554
Q ss_pred C--------------CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc-----------CCHhHHHHHHHHHHHCCCc
Q 011362 217 T--------------GRVNHAKELFVSMESMGCKHTVFSYSILINGYCKN-----------KEIEGALSLYSEMLSKGIK 271 (487)
Q Consensus 217 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 271 (487)
. +.++++++.+....... |.|...|+.+-..+.+. +.++++++.+.++.+..
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-- 268 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-- 268 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--
Confidence 4 45788999999988775 67788887665555554 45789999999999854
Q ss_pred cChhhHHHHHH-----HHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 011362 272 PDVVIHNTLFV-----GLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDG 318 (487)
Q Consensus 272 ~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 318 (487)
|+. .|..+.. .....+..+++...+.++.+.+ |....-|..+...
T Consensus 269 pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~ 318 (331)
T 3dss_A 269 PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSK 318 (331)
T ss_dssp TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHH
T ss_pred ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHH
Confidence 343 3332222 2224677889999999998853 3334445554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.72 E-value=2.3e-07 Score=81.69 Aligned_cols=129 Identities=14% Similarity=-0.083 Sum_probs=82.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCC--------------hHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCC
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCEFD--------------IRAYNSLIDGLCKSGRLEIALELFRSLPCGVLV 376 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 376 (487)
.+..+...+.+.|++++|...|++......... ..++..+..+|.+.|++++|...++++++.. +
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 344444445555555555555555544331111 4667777777777788888888777777653 4
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHHH
Q 011362 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKV-IELLHKMK 441 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 441 (487)
.+...|..+..+|...|++++|...|+++++... .+...+..+..++...|+.++| ...+++|.
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777788888888888888888776532 2456677777777777777776 44555554
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-07 Score=69.93 Aligned_cols=105 Identities=12% Similarity=0.070 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCC----HHHHHHH
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV--VPN----VITFDML 420 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l 420 (487)
+..++..+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4445555555555555555555555432 33345555555566666666666666655543210 011 1244555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 421 IRGFIRINEPSKVIELLHKMKEINVMPDASIVSI 454 (487)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (487)
..++...|++++|++.|++.++. .|++.+...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 56666666666666666666652 355544433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-07 Score=72.13 Aligned_cols=99 Identities=8% Similarity=-0.095 Sum_probs=79.4
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
+...+..+...+...|++++|+..|+++...+ |.+...|..+..++...|++++|+..|++....+ +.+...
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 88 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLD-------HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-------CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHH
Confidence 34456677778888888888888888888765 5677888888888888888888888888887764 346677
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
+..+..++...|++++|...|+...+.
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 788888888888888888888888765
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=4.7e-07 Score=67.93 Aligned_cols=101 Identities=14% Similarity=-0.016 Sum_probs=88.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
+.+...|..+...+...|++++|+..|+++.... +.+...+..+..++...|++++|+..++++.+.. |.+.
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-------p~~~ 77 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSV 77 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------chhH
Confidence 4467888999999999999999999999998875 5567888899999999999999999999998876 5678
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..+..+..++...|++++|...|++....
T Consensus 78 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 78 KAHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 88999999999999999999999888764
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-07 Score=69.65 Aligned_cols=111 Identities=12% Similarity=0.035 Sum_probs=91.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc----
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN---- 98 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---- 98 (487)
...|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...++++.... +.+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~ 75 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-------RENREDY 75 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------HHSTTCH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-------cccchhH
Confidence 5668889999999999999999999999875 5577888899999999999999999999988754 222
Q ss_pred ---hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH
Q 011362 99 ---TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG 143 (487)
Q Consensus 99 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 143 (487)
...+..+..++...|++++|.+.|+...+. .|+......+..+
T Consensus 76 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~ 121 (131)
T 1elr_A 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence 677888889999999999999999988875 3465555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.9e-08 Score=80.16 Aligned_cols=157 Identities=11% Similarity=-0.073 Sum_probs=93.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc---------
Q 011362 28 SLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN--------- 98 (487)
Q Consensus 28 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--------- 98 (487)
..+......|+++++.+.|+.-.... ......+..+...+...|++++|+..|++..+..+.... ...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~ 85 (198)
T 2fbn_A 9 HHSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE--WDDQILLDKKKN 85 (198)
T ss_dssp -------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT--CCCHHHHHHHHH
T ss_pred chhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc--cchhhHHHHHHH
Confidence 34445556677777777776433221 223456778888999999999999999999986521000 000
Q ss_pred --hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 99 --TVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 99 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
...+..+..++...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+.... +...+..+.
T Consensus 86 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 163 (198)
T 2fbn_A 86 IEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHH
Confidence 2667777777777788888888777777653 335667777777777777777777777777665322 444555555
Q ss_pred HHHHhCCChHHHH
Q 011362 177 DELCKNGKMDEAS 189 (487)
Q Consensus 177 ~~~~~~~~~~~a~ 189 (487)
.++...++..++.
T Consensus 164 ~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 164 LCVNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHH
Confidence 5555554444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.68 E-value=4.4e-07 Score=70.58 Aligned_cols=99 Identities=10% Similarity=-0.021 Sum_probs=82.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...|..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..|++..+.. +.+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-------PKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHH
Confidence 46677888888889999999999999888875 4567788888888888999999999998888876 566788
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|..+..++...|++++|...|++..+.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 888888888888999888888888765
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.67 E-value=4.6e-07 Score=66.85 Aligned_cols=92 Identities=13% Similarity=-0.039 Sum_probs=38.5
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHcc
Q 011362 313 RTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCND 392 (487)
Q Consensus 313 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 392 (487)
......+.+.|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...|..+..++...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHH
Confidence 333344444444444444444444332 2333444444444444444444444444443321 22233444444444444
Q ss_pred CCHHHHHHHHHHHH
Q 011362 393 GQMDKARDLFLDME 406 (487)
Q Consensus 393 g~~~~A~~~~~~~~ 406 (487)
|++++|...|++..
T Consensus 86 ~~~~~A~~~~~~al 99 (126)
T 3upv_A 86 KEYASALETLDAAR 99 (126)
T ss_dssp TCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHH
Confidence 44444444444443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.67 E-value=7.2e-08 Score=70.15 Aligned_cols=87 Identities=9% Similarity=-0.059 Sum_probs=74.0
Q ss_pred CCccchHHHHHHHHHhCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHH
Q 011362 1 MGRVSHGFVVLGRILKSC--FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
.|++++|+..|+++++.+ .|.+..++..+..+|...|++++|+..|+++++.. +.+..++..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence 489999999999999974 23457789999999999999999999999999885 556788899999999999999999
Q ss_pred HHHHHHHhCC
Q 011362 79 NLFEEMANGN 88 (487)
Q Consensus 79 ~~~~~~~~~~ 88 (487)
..+++.....
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 9999998864
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.4e-06 Score=66.28 Aligned_cols=99 Identities=11% Similarity=-0.067 Sum_probs=72.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccc
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCE 96 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 96 (487)
.+...+..+...+...|++++|+..|+++.+. .|+ ...+..+..++...|++++|+..+++..+.. +
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------~ 96 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-------G 96 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-------S
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-------c
Confidence 35666777777788888888888888887765 344 4566677777777888888888887777654 4
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 97 PNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 97 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
.+...+..+..++...|++++|...|++....
T Consensus 97 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 97 GDVKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 45667777777777777777777777777665
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=3.2e-07 Score=67.03 Aligned_cols=96 Identities=9% Similarity=-0.070 Sum_probs=84.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..++...|++++|+..|++..+.. |.+...+..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-------P~~~~~~~~ 90 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAVHAA 90 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 45667888899999999999999999875 5578888999999999999999999999999876 567888999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+..++...|++++|+..+++..+.
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 91 LAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999998875
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=9e-07 Score=64.18 Aligned_cols=96 Identities=11% Similarity=-0.038 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 011362 346 AYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFI 425 (487)
Q Consensus 346 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (487)
.+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34444445555555555555555554431 2234455555555555555555555555555432 123445555555555
Q ss_pred hcCChhHHHHHHHHHHhc
Q 011362 426 RINEPSKVIELLHKMKEI 443 (487)
Q Consensus 426 ~~g~~~~a~~~~~~~~~~ 443 (487)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 566666666666555543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.63 E-value=5.3e-07 Score=64.70 Aligned_cols=100 Identities=10% Similarity=-0.037 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--CH
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP--NV 134 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~ 134 (487)
+...+..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+++..+.. +. +.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 76 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNK 76 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchH
Confidence 34456667777777777777777777777654 4556677777777777777777777777776652 23 46
Q ss_pred hhHHHHHHHHHhc-CChhhHHHHHHHHHHcC
Q 011362 135 VTYTSVIRGFCYA-KDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 135 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~ 164 (487)
..+..+..++... |++++|.+.+++.....
T Consensus 77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 77 DVWAAKADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHHHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 6677777777777 77777777777776653
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.62 E-value=6.1e-08 Score=89.25 Aligned_cols=143 Identities=11% Similarity=-0.034 Sum_probs=91.4
Q ss_pred ccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD--------------VFTYTTLVNGL 68 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~ 68 (487)
++++|+..|+..+... +.....|..+...+.+.|++++|+..|+++++...... ..+|..+..+|
T Consensus 249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 327 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY 327 (457)
T ss_dssp EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555544432 22466788889999999999999999999987642211 35566666667
Q ss_pred HccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcC
Q 011362 69 CRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAK 148 (487)
Q Consensus 69 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 148 (487)
.+.|++++|+..++++.+.. +.+...|..+..+|...|++++|+..|+++.+.. +.+...+..+..++.+.+
T Consensus 328 ~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~ 399 (457)
T 1kt0_A 328 LKLREYTKAVECCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAK 399 (457)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 77777777777777766654 4556666666677777777777777777666552 224455666666666666
Q ss_pred ChhhHH
Q 011362 149 DWNEAK 154 (487)
Q Consensus 149 ~~~~a~ 154 (487)
+.+++.
T Consensus 400 ~~~~a~ 405 (457)
T 1kt0_A 400 EHNERD 405 (457)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.2e-06 Score=65.08 Aligned_cols=113 Identities=11% Similarity=0.001 Sum_probs=81.7
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCc----HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHH
Q 011362 342 FDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPN----VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITF 417 (487)
Q Consensus 342 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 417 (487)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 35566777777788888888888888887765 344 5677778888888888888888888887753 2256677
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 418 DMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDL 458 (487)
Q Consensus 418 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (487)
..+..++...|++++|...+++..+.. +.+...+..+...
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence 778888888888888888888888754 3334444444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-06 Score=79.95 Aligned_cols=194 Identities=6% Similarity=-0.095 Sum_probs=126.9
Q ss_pred CccchHHHHHHHHHhCCCCCCH----------------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCH----HH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDA----------------VTFTSLIKGLCAESRIMEAAALFTKLRVFGCE-PDV----FT 60 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~ 60 (487)
|++++|++.|..+++....... .++..++..|...|++++|.+.+..+...-.. ++. .+
T Consensus 18 ~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 97 (434)
T 4b4t_Q 18 KQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVL 97 (434)
T ss_dssp TCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 7899999999999987643221 24677899999999999999999987654211 111 12
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CC---CCCHh
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK--NI---KPNVV 135 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~ 135 (487)
.+.+...+...|+++.|..+++.........+. ......++..++..+...|++++|..+++.+... +. +....
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~ 176 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR-VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVD 176 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC-CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHH
Confidence 333444555678899998888876543210000 1223567778888888889999998888876542 11 11244
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcC--CC-C-C--hhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQG--VQ-P-N--VVTFNVIMDELCKNGKMDEASRLLDLMI 196 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~-~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 196 (487)
++..+++.|...|++++|..++++..... .. | . ...+..+...+...+++++|...|....
T Consensus 177 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 177 VHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 67777888888888888888887765421 11 1 1 1234445555666777777776665554
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.56 E-value=1.5e-06 Score=67.47 Aligned_cols=99 Identities=11% Similarity=0.047 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
+...+..+...+...|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+.. +.+...
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 81 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHH
Confidence 34566777777788888888888888877765 5567777888888888888888888888877763 335677
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
|..+..++...|++++|...|++..+.
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 777888888888888888888877765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-07 Score=66.63 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=77.2
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+++++.. |.+...|..+..++...|++++|+..|+++++.. +.+...+..+..++...|++++|+..
T Consensus 30 ~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g~~~~A~~~ 107 (121)
T 1hxi_A 30 LANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 107 (121)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999999986 5589999999999999999999999999999885 55677899999999999999999999
Q ss_pred HHHHHhCC
Q 011362 81 FEEMANGN 88 (487)
Q Consensus 81 ~~~~~~~~ 88 (487)
++++.+..
T Consensus 108 ~~~al~~~ 115 (121)
T 1hxi_A 108 LRAWLLSQ 115 (121)
T ss_dssp HHHHHC--
T ss_pred HHHHHHhC
Confidence 99998865
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.9e-06 Score=62.68 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=69.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc---h
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDV---FTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN---T 99 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---~ 99 (487)
+..+...+...|++++|+..|+++.+.. +.+. ..+..+..++...|++++|+..|+++.+.. |.+ .
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-------p~~~~~~ 76 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-------PTHDKAA 76 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTSTTHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-------CCCcccH
Confidence 4456677778888888888888887764 2233 466677778888888888888888877754 333 5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
..+..+..++...|++++|...|+.+...
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66777777788888888888888877765
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.6e-06 Score=76.52 Aligned_cols=201 Identities=10% Similarity=-0.069 Sum_probs=129.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC----------------HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcc
Q 011362 30 IKGLCAESRIMEAAALFTKLRVFGCEPD----------------VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGV 93 (487)
Q Consensus 30 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 93 (487)
.+.+...|++++|++.|..+.+...... ..++..++..|...|++++|.+.+..+....+..+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 5677899999999999999987642211 124677889999999999999999887654311000
Q ss_pred ccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--
Q 011362 94 VCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----NIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ-- 166 (487)
Q Consensus 94 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-- 166 (487)
......+.+.+...+...|+.+.|..+++..... +..+ ...++..+...+...|++++|..++.++...-..
T Consensus 91 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 -SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp -HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred -hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 0001123334444555678888888888776532 2222 2456777888888888888888888877543111
Q ss_pred --C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 167 --P-NVVTFNVIMDELCKNGKMDEASRLLDLMIQH----GVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 167 --~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
+ ....+..+++.|...|++++|..+++..... +.++. ...+..+...+...+++++|...|.+..
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1345666777888888888888887766542 11111 2345555666667777777776665553
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-07 Score=85.47 Aligned_cols=114 Identities=8% Similarity=-0.038 Sum_probs=89.4
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|++.|+++++.. |.+..+|..+..+|.+.|++++|++.++++.+.. +.+..++..+..+|...|++++|++.
T Consensus 19 ~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~~~ 96 (477)
T 1wao_1 19 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD 96 (477)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 478899999999999885 4468888999999999999999999999998875 55677888889999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHH--HHhcCChhHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDG--LCKEGFVDKAKELLL 123 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 123 (487)
|+++.+.. |.+...+..+..+ +.+.|++++|++.++
T Consensus 97 ~~~al~~~-------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 97 YETVVKVK-------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHS-------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99988865 3445556555555 777888888988887
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.54 E-value=5.7e-07 Score=66.71 Aligned_cols=94 Identities=13% Similarity=0.119 Sum_probs=40.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCC----HHHHHHHH
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAV--VPN----VITFDMLI 421 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~~l~ 421 (487)
..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+... .++ ..++..+.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la 86 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence 333444444444444444444443321 22333444444444444444444444444433211 011 33444444
Q ss_pred HHHHhcCChhHHHHHHHHHHh
Q 011362 422 RGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~ 442 (487)
.++...|++++|.+.++++.+
T Consensus 87 ~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 87 NSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH
Confidence 555555555555555555554
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-06 Score=64.00 Aligned_cols=100 Identities=13% Similarity=-0.046 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHh
Q 011362 56 PDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVV 135 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 135 (487)
.+...+..+...+...|++++|+..|++..... |.+...+..+..++...|++++|...+++..+.. +.+..
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 78 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVK 78 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHH
Confidence 345556666666666666666666666666654 4455666666666666666666666666666543 22455
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
.+..+..++...|++++|...|++..+.
T Consensus 79 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 79 AHFFLGQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6666666666666666666666665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.49 E-value=3e-06 Score=62.66 Aligned_cols=86 Identities=13% Similarity=-0.016 Sum_probs=74.3
Q ss_pred CCccchHHHHHHHHHhCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---HHHHHHHHHHHHccCCh
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDA---VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD---VFTYTTLVNGLCRTSHT 74 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~ 74 (487)
.|++++|+..|+.++...+ .+. .++..+..++...|++++|+..|+++.... +.+ ..++..+..++...|++
T Consensus 15 ~~~~~~A~~~~~~~~~~~p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~~~~g~~ 92 (129)
T 2xev_A 15 NGKYDDASQLFLSFLELYP-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQYGEGKN 92 (129)
T ss_dssp TTCHHHHHHHHHHHHHHCS-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCH
T ss_pred hCCHHHHHHHHHHHHHHCC-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHcCCH
Confidence 4899999999999999753 344 578889999999999999999999999875 333 56788899999999999
Q ss_pred HHHHHHHHHHHhCC
Q 011362 75 IVALNLFEEMANGN 88 (487)
Q Consensus 75 ~~a~~~~~~~~~~~ 88 (487)
++|...|+++.+..
T Consensus 93 ~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 93 TEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHC
Confidence 99999999999865
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.48 E-value=1.3e-06 Score=67.51 Aligned_cols=139 Identities=10% Similarity=0.001 Sum_probs=95.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCE-PD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
..++..+...+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+.....+. .+.
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-RAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-cHH
Confidence 456788888999999999999999998765211 11 136777888889999999999999887653210000 111
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 98 NTVTYTTIIDGLCKEGFVDKAKELLLQMKDK----NIK-PNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
....+..+..++...|++++|.+.+++.... +.+ .....+..+...+...|++++|.+.+++..+
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 2456777788888888888888888776543 111 1133566667777777777777777777654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-07 Score=86.58 Aligned_cols=125 Identities=9% Similarity=-0.061 Sum_probs=98.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..+...+.+.|++++|++.|+++++.. +.+..++..+..++.+.|++++|++.++++.+.. |.+...+..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-------p~~~~~~~~ 79 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYR 79 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCCHHHHHH
Confidence 34445666778999999999999998875 5567889999999999999999999999999876 667889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHH--HHhcCChhhHHHHHH
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRG--FCYAKDWNEAKRLFI 158 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 158 (487)
+..+|...|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.++
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999988763 2244556666655 778899999999888
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.8e-06 Score=65.78 Aligned_cols=99 Identities=12% Similarity=0.011 Sum_probs=67.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc--------CC---------CCCHHHHHHHHHHHHccCChHHHHHHHHHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVF--------GC---------EPDVFTYTTLVNGLCRTSHTIVALNLFEEMA 85 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 85 (487)
+..+......+.+.|++++|+..|++.+.. .. +.+...|..+..++.+.|++++|+..++++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 556788889999999999999999998875 10 1122455566666666666666666666666
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+.+ |.+...|..+..++...|++++|...|++....
T Consensus 91 ~~~-------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KRE-------ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcC-------CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 654 445666666666666666666666666666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.42 E-value=3.1e-06 Score=75.32 Aligned_cols=97 Identities=12% Similarity=-0.032 Sum_probs=52.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---------------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFG---------------CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..+..+...+.+.|++++|+..|+++++.- .+.+..+|..+..++.+.|++++|+..++++.+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 346777888888888888888888887620 01122334444444444455555555554444433
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
+.+...+..+..+|...|++++|++.|++..+
T Consensus 304 -------p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~ 335 (370)
T 1ihg_A 304 -------PSNTKALYRRAQGWQGLKEYDQALADLKKAQE 335 (370)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------chhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.39 E-value=7.3e-07 Score=64.72 Aligned_cols=86 Identities=14% Similarity=0.016 Sum_probs=56.5
Q ss_pred cCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC
Q 011362 36 ESRIMEAAALFTKLRVFG--CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
.|++++|+..|+++++.+ -+.+..++..+..++...|++++|+..|+++.+.. |.+...+..+..++...|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g 75 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-------PNHQALRVFYAMVLYNLG 75 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCchHHHHHHHHHHHHcC
Confidence 567777777777777653 12234466677777777777777777777777765 455667777777777777
Q ss_pred ChhHHHHHHHHHHhC
Q 011362 114 FVDKAKELLLQMKDK 128 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~ 128 (487)
++++|...+++....
T Consensus 76 ~~~~A~~~~~~al~~ 90 (117)
T 3k9i_A 76 RYEQGVELLLKIIAE 90 (117)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh
Confidence 777777777776654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.38 E-value=6.9e-06 Score=61.71 Aligned_cols=99 Identities=16% Similarity=-0.012 Sum_probs=83.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CH-----HHHHHHHHHHHccCChHHHHHHHHHHHhC----
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEP------DV-----FTYTTLVNGLCRTSHTIVALNLFEEMANG---- 87 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 87 (487)
...+......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++..+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 4456778888999999999999999999874221 22 38899999999999999999999999986
Q ss_pred ---CCCCccccccchHHH----HHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 88 ---NGEFGVVCEPNTVTY----TTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 88 ---~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+ |.+...| .....++...|++++|+..|++..+.
T Consensus 91 ~e~~-------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 91 GELN-------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CCTT-------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCC-------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 5 5567788 89999999999999999999998764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.3e-06 Score=66.14 Aligned_cols=132 Identities=14% Similarity=0.023 Sum_probs=85.7
Q ss_pred hHHHHHHHHHhCCCHhHHHHHHHHHHHcCCC-CC----hHhHHHHHHHHHhcCCHHHHHHHHHhccCC----CCCC-cHH
Q 011362 311 TYRTFIDGLCKNGYIVEAVELFHTLRILKCE-FD----IRAYNSLIDGLCKSGRLEIALELFRSLPCG----VLVP-NVV 380 (487)
Q Consensus 311 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~ 380 (487)
++..+...+...|++++|...+++....... .+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666677777777766665532111 11 135666777777778888777777765432 1011 134
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 381 TYSIMIGGLCNDGQMDKARDLFLDMEEN----AVVP-NVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 381 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
++..+..++...|++++|...+++..+. +..+ ....+..+...+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6677778888888888888888877642 1111 134567778888899999999999888765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.36 E-value=4.8e-06 Score=64.48 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEIN 444 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 444 (487)
...|..+..+|.+.|++++|+..++++++.. +.+...|..+..+|...|++++|...+++.++..
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 4567777777777888888888877777653 2256677777777778888888888888777743
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.34 E-value=6.7e-06 Score=73.13 Aligned_cols=119 Identities=10% Similarity=-0.053 Sum_probs=58.4
Q ss_pred HHHHHHHHHhCCCHhHHHHHHHHHHHcC---------------CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCC
Q 011362 312 YRTFIDGLCKNGYIVEAVELFHTLRILK---------------CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLV 376 (487)
Q Consensus 312 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 376 (487)
+..+...+.+.|++++|...|+++++.. .+.+..+|..+..+|.+.|++++|...++++++.. +
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence 4455556666777777777766665410 02233444455555555555555555555555432 2
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 011362 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSK 432 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 432 (487)
.+...|..+..+|...|++++|+..|+++.+... .+...+..+..++...++.++
T Consensus 305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~ 359 (370)
T 1ihg_A 305 SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKD 359 (370)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 2344455555555555555555555555544321 133344444444444443333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.34 E-value=4.2e-06 Score=60.40 Aligned_cols=83 Identities=13% Similarity=-0.005 Sum_probs=73.6
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEE 83 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 83 (487)
+++|+..|+.+++.. |.+...+..+...|...|++++|+..|+++.+.. +.+...+..+..++...|++++|...|++
T Consensus 1 ~~~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 1 MQAITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCCHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 367899999999986 4578899999999999999999999999999875 55677899999999999999999999999
Q ss_pred HHhCC
Q 011362 84 MANGN 88 (487)
Q Consensus 84 ~~~~~ 88 (487)
..+..
T Consensus 79 al~~~ 83 (115)
T 2kat_A 79 GLAAA 83 (115)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88743
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.33 E-value=2e-06 Score=75.69 Aligned_cols=148 Identities=10% Similarity=-0.054 Sum_probs=62.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
...+..+...+.+.|++++|+..|++++... |+... +...|+.+++...+ ....|
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l----------------~~~~~ 233 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAV----------------KNPCH 233 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHH----------------HTHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHH----------------HHHHH
Confidence 4456777888888899999999999887753 33321 11122222221111 01345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHH-HHh
Q 011362 103 TTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDE-LCK 181 (487)
Q Consensus 103 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 181 (487)
..+..++.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+.... +...+..+... ...
T Consensus 234 ~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~ 311 (338)
T 2if4_A 234 LNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQE 311 (338)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHH
Confidence 555555555555555555555555442 224455555555555555555555555555443211 22233333322 122
Q ss_pred CCChHHHHHHHHHHHH
Q 011362 182 NGKMDEASRLLDLMIQ 197 (487)
Q Consensus 182 ~~~~~~a~~~~~~~~~ 197 (487)
.+..+.+...|..+..
T Consensus 312 ~~~~~~a~~~~~~~l~ 327 (338)
T 2if4_A 312 KALYQKQKEMYKGIFK 327 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHHhhC
Confidence 3344455555555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.4e-06 Score=77.60 Aligned_cols=118 Identities=13% Similarity=-0.008 Sum_probs=97.6
Q ss_pred CCccchHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD--------------AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVN 66 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 66 (487)
.|++++|+..|++++...+... ..+|..+..+|.+.|++++|+..++++++.. +.+..++..+..
T Consensus 281 ~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~ 359 (457)
T 1kt0_A 281 GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGE 359 (457)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHH
Confidence 4899999999999999753322 5889999999999999999999999999986 567888999999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHH-HHHHHH
Q 011362 67 GLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE-LLLQMK 126 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~-~~~~~~ 126 (487)
+|...|++++|+..|+++.+.. |.+...+..+..++.+.++.+++.. .+..|.
T Consensus 360 a~~~~g~~~~A~~~~~~al~l~-------P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 360 AQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 5677888889999988888877664 455544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-05 Score=57.76 Aligned_cols=98 Identities=7% Similarity=0.011 Sum_probs=79.5
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCC-------H
Q 011362 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPD-------A 449 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~ 449 (487)
++...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|.+.++++++.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 356678888889999999999999999998763 2367788888999999999999999999998754 44 5
Q ss_pred HHHHHHHHHHHhcccccccccccccchh
Q 011362 450 SIVSIVVDLLAKNEISLNSLPSFTVHEQ 477 (487)
Q Consensus 450 ~~~~~l~~~~~~~g~~~~~~~~~~~~~~ 477 (487)
..+..+..++...|+..++++.+...|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 106 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDELPE 106 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSSCSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHHhHH
Confidence 5667777888888888888888776654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.5e-05 Score=71.84 Aligned_cols=172 Identities=10% Similarity=-0.049 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCC----------HhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcC--
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGY----------IVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSG-- 358 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 358 (487)
++|+..++.+...+ +.+..+|+.-..++...|+ ++++...++.+.... +.+..+|+.-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 45555555555542 2233344444444444444 667777777776655 556666666666666666
Q ss_pred CHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----------
Q 011362 359 RLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG-QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRI---------- 427 (487)
Q Consensus 359 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------- 427 (487)
+++++++.++++.+.. +-+..+|+.-..++...| .++++++.++++++..+. +...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 5577777777776653 445666766666666666 677777777777765433 566666666555543
Q ss_pred ----CChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccc
Q 011362 428 ----NEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLN 467 (487)
Q Consensus 428 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 467 (487)
+.++++++.++++...+ +-+...|......+.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 45688999999988865 5577888888888888887554
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4.2e-05 Score=72.08 Aligned_cols=169 Identities=9% Similarity=-0.061 Sum_probs=106.8
Q ss_pred chHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC--
Q 011362 5 SHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESR----------IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-- 72 (487)
Q Consensus 5 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 72 (487)
++|++.++.++..+ |-+..+|+.-..++...|+ ++++++.++++.+.. +-+..+|..-..++.+.+
T Consensus 46 eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 46 ESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccc
Confidence 46677777777775 3366677766666666666 777777777777765 456666776666666777
Q ss_pred ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhc----
Q 011362 73 HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG-FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYA---- 147 (487)
Q Consensus 73 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 147 (487)
+++++++.++++.+.+ +.+..+|+.-..++.+.| .++++++.++++.+... -+..+|+.....+.+.
T Consensus 124 ~~~~el~~~~k~l~~d-------~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~ 195 (567)
T 1dce_A 124 NWARELELCARFLEAD-------ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 195 (567)
T ss_dssp CHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred cHHHHHHHHHHHHhhc-------cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCC-CCccHHHHHHHHHHhhcccc
Confidence 5577777777777766 566777777666666777 67777777777776643 3666777666555442
Q ss_pred ----------CChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCC
Q 011362 148 ----------KDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGK 184 (487)
Q Consensus 148 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (487)
+.++++++.+.+++...+. +...|..+...+.+.+.
T Consensus 196 ~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 196 DSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred cccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence 2345555555555544322 34444444444433333
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.8e-05 Score=58.08 Aligned_cols=109 Identities=11% Similarity=-0.070 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----cC
Q 011362 38 RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EG 113 (487)
Q Consensus 38 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 113 (487)
++++|+++|++..+.| .++.. +...|...+..++|.++|++..+.+ ++..+..|...|.. .+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~~~ 75 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKYVKK 75 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---------CHHHHHHHHHHHHcCCCCCc
Confidence 3444444444444443 22221 3333444444444444444444432 23444444444444 44
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHc
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 163 (487)
++++|.++|++..+.| ++..+..|...|.. .+++++|..+|++..+.
T Consensus 76 d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 76 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4444554444444432 33344444444444 44445555554444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.3e-05 Score=58.48 Aligned_cols=112 Identities=5% Similarity=-0.163 Sum_probs=96.0
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR----TSHTIVA 77 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 77 (487)
+++++|++.|+.+.+.+ .++.. |...|...+.+++|+++|++..+.| +...+..+...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 36789999999999987 33333 7888888889999999999998864 67788888888888 8999999
Q ss_pred HHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCC
Q 011362 78 LNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNI 130 (487)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 130 (487)
..+|++..+.+ ++..+..|...|.. .++.++|..+|++..+.|.
T Consensus 81 ~~~~~~Aa~~g---------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 81 AQYYSKACGLN---------DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCC---------CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999999865 57888889999988 8999999999999998863
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-06 Score=63.23 Aligned_cols=95 Identities=9% Similarity=-0.023 Sum_probs=73.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc---
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN--- 98 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--- 98 (487)
+...+..+...+...|++++|+..|+++++.. +.+...+..+..++...|++++|+..+++..+.. |.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 74 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-------STAEHV 74 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------SSTTSH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCccHH
Confidence 45677888889999999999999999988875 5567788888899999999999999999998865 333
Q ss_pred ---hHHHHHHHHHHHhcCChhHHHHHHHH
Q 011362 99 ---TVTYTTIIDGLCKEGFVDKAKELLLQ 124 (487)
Q Consensus 99 ---~~~~~~l~~~~~~~g~~~~a~~~~~~ 124 (487)
...+..+..++...|+.+.|...+++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 55666667777777766666555443
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.7e-06 Score=73.99 Aligned_cols=119 Identities=9% Similarity=-0.041 Sum_probs=59.8
Q ss_pred CCccchHHHHHHHHHhCCCCCCH-----------------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDA-----------------VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTT 63 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 63 (487)
.|++++|+..|++++... +.+. .+|..+..+|.+.|++++|+..++++++.. +.+...+..
T Consensus 192 ~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~ 269 (338)
T 2if4_A 192 EEKLEEAMQQYEMAIAYM-GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFR 269 (338)
T ss_dssp SSCCHHHHHHHHHHHHHS-CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHh-ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 488999999999999874 2122 256667777777777777777777776654 345666777
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH-HHhcCChhHHHHHHHHHHhC
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG-LCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 128 (487)
+..+|...|++++|+..|+++.+.. |.+...+..+... ....+..+.+...|..+...
T Consensus 270 lg~a~~~~g~~~~A~~~l~~al~l~-------p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 270 RGKAKAELGQMDSARDDFRKAQKYA-------PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHHTTTCHHHHHHHHHHTTC-------------------------------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 7777777777777777777776654 3344444444444 22334455566666665543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.1e-06 Score=62.76 Aligned_cols=97 Identities=15% Similarity=0.056 Sum_probs=80.8
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRI----------MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT 71 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 71 (487)
+++++|++.+++.++.. |.+...|..+..++...+++ ++|+..|++.++.. +.+..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHh
Confidence 56899999999999997 55899999999999998875 49999999999986 55677899999999877
Q ss_pred C-----------ChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 72 S-----------HTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 72 g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
| ++++|++.|++..+.+ |+...|...+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~--------P~~~~y~~al~~ 133 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ--------PDNTHYLKSLEM 133 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC--------CCCHHHHHHHHH
Confidence 4 8999999999999954 665555555443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.23 E-value=8.7e-06 Score=61.16 Aligned_cols=87 Identities=14% Similarity=0.062 Sum_probs=74.7
Q ss_pred CCccchHHHHHHHHHhCCCCC------CH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCHHHH-
Q 011362 1 MGRVSHGFVVLGRILKSCFTP------DA-----VTFTSLIKGLCAESRIMEAAALFTKLRVF-------GCEPDVFTY- 61 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~- 61 (487)
.|++++|+..|+.+++..+.. +. .+|..+..++...|++++|+..+++.++. . +.+...|
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~-pd~~~A~~ 102 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN-QDEGKLWI 102 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT-STHHHHHH
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC-CchHHHHH
Confidence 389999999999999986431 23 38999999999999999999999999986 5 4456678
Q ss_pred ---HHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 62 ---TTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 62 ---~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
.....++...|++++|+..|++..+..
T Consensus 103 ~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 103 SAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 899999999999999999999998754
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=54.78 Aligned_cols=84 Identities=13% Similarity=0.130 Sum_probs=71.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|+..+++..+.. |.+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-------p~~~~~ 79 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------PNNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------CCCHHH
Confidence 46778889999999999999999999999875 5567788999999999999999999999999865 556777
Q ss_pred HHHHHHHHHhcC
Q 011362 102 YTTIIDGLCKEG 113 (487)
Q Consensus 102 ~~~l~~~~~~~g 113 (487)
+..+..++...|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 777777766543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.2e-06 Score=76.81 Aligned_cols=127 Identities=7% Similarity=-0.118 Sum_probs=93.2
Q ss_pred CCccchHHHHHHHHHhCCCC---C----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFT---P----DAVTFTSLIKGLCAESRIMEAAALFTKLRVF-----GC-EPD-VFTYTTLVN 66 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~---~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~ 66 (487)
.|++++|+.++++++..... + ...+++.|+..|...|++++|..++++.+.. |. .|+ ..+++.|..
T Consensus 322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 401 (490)
T 3n71_A 322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL 401 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 48999999999998765311 1 2567899999999999999999999998754 21 233 346889999
Q ss_pred HHHccCChHHHHHHHHHHHhCCC-CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 67 GLCRTSHTIVALNLFEEMANGNG-EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
.|..+|++++|+.++++...... .+|...|....+...+..++...+.+++|+.+|..+++
T Consensus 402 ~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 402 TNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988764221 01111233445566777777788888888888888765
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.6e-06 Score=75.13 Aligned_cols=131 Identities=7% Similarity=-0.084 Sum_probs=94.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhc-----CC-CCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC-CCccccccchHHHH
Q 011362 32 GLCAESRIMEAAALFTKLRVF-----GC-EPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNG-EFGVVCEPNTVTYT 103 (487)
Q Consensus 32 ~~~~~g~~~~A~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~ 103 (487)
.+..+|++++|+.++++.++. |. .|+ ..+++.|+.+|...|++++|+.++++...... .+|...|....+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 356889999999999998765 21 122 34688999999999999999999988765321 01111244456789
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDK-----N--IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
.|...|...|++++|+.++++.... | .+....+...+..++...+.+++|+.+|..+.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988887542 2 122233455666777778888888888887765
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.4e-05 Score=59.85 Aligned_cols=99 Identities=15% Similarity=0.003 Sum_probs=79.2
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCCh----------HHHHHHHHHHHhCCCCCccccccchHHHH
Q 011362 34 CAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHT----------IVALNLFEEMANGNGEFGVVCEPNTVTYT 103 (487)
Q Consensus 34 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (487)
.+.+.+++|++.+++..+.. +.+...|..+..++...+++ ++|+..|++..+.+ |.+..+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-------P~~~~A~~ 84 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------PKKDEAVW 84 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-------cCcHHHHH
Confidence 45678999999999999886 66888999899898888765 59999999999977 66788999
Q ss_pred HHHHHHHhcC-----------ChhHHHHHHHHHHhCCCCCCHhhHHHHHH
Q 011362 104 TIIDGLCKEG-----------FVDKAKELLLQMKDKNIKPNVVTYTSVIR 142 (487)
Q Consensus 104 ~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 142 (487)
.+..+|...| ++++|++.|++..+. .|+...|...+.
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 9999998875 788888888888775 455554444333
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.00 E-value=4e-05 Score=55.14 Aligned_cols=80 Identities=11% Similarity=0.023 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHH
Q 011362 41 EAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE 120 (487)
Q Consensus 41 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 120 (487)
+|+..|+++.+.. +.+...+..+...+...|++++|+..|++..+.. |.+...|..+..++...|++++|..
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~ 74 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQGQGDRAGARQ 74 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHcCCHHHHHH
Confidence 5777888887764 5567788888888999999999999999988865 5567788888888889999999999
Q ss_pred HHHHHHhC
Q 011362 121 LLLQMKDK 128 (487)
Q Consensus 121 ~~~~~~~~ 128 (487)
.|++....
T Consensus 75 ~~~~al~~ 82 (115)
T 2kat_A 75 AWESGLAA 82 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887654
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.97 E-value=3.8e-05 Score=53.55 Aligned_cols=67 Identities=22% Similarity=0.098 Sum_probs=59.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 20 TPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
|.+..++..+..+|...|++++|+..|+++++.. +.+...|..+..+|...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4578889999999999999999999999999886 556778999999999999999999999998764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00016 Score=49.16 Aligned_cols=81 Identities=15% Similarity=0.146 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDL 458 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (487)
...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4456666666777777777777777776543 2245566666677777777777777777776643 3344555555555
Q ss_pred HHh
Q 011362 459 LAK 461 (487)
Q Consensus 459 ~~~ 461 (487)
+.+
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00024 Score=49.44 Aligned_cols=67 Identities=22% Similarity=0.167 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+.+...+..+..++...|++++|+..|+++.+.. |.+...|..+..+|...|++++|.+.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-------PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4466778888888889999999999999888876 556778888888888999999998888887653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.61 E-value=0.0021 Score=55.68 Aligned_cols=137 Identities=7% Similarity=0.002 Sum_probs=72.8
Q ss_pred CCCCHHhHHHHHHHHH--hcC---CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH----ccCCh-HH---HHHHHHHHH
Q 011362 19 FTPDAVTFTSLIKGLC--AES---RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLC----RTSHT-IV---ALNLFEEMA 85 (487)
Q Consensus 19 ~~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~-~~---a~~~~~~~~ 85 (487)
.|.+..+|...+++.. ..+ +..+|+.+|+++++.. |-....+..+.-++. ..+.. .. ....++...
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 4567778877776543 333 3578899999988874 233344444443332 10000 11 111111111
Q ss_pred hCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 86 NGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
.... .+.++..|..+...+...|+++.|...++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 269 a~~~-----~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 269 TLPE-----LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp TCGG-----GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hccc-----CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 1100 24455556555555555566666666666666653 45555555566666666666666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0016 Score=56.44 Aligned_cols=75 Identities=9% Similarity=0.036 Sum_probs=57.9
Q ss_pred CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHH
Q 011362 376 VPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSI 454 (487)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (487)
+.+..+|..+...+...|++++|...++++...+ |+...|..+...+...|++++|.+.++++... .|...+|..
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 4566777777777777788999999988888864 67777777788888889999999888888874 466665543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0004 Score=62.65 Aligned_cols=85 Identities=7% Similarity=-0.125 Sum_probs=68.4
Q ss_pred CccchHHHHHHHHHhCC---CCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-CCCCH-HHHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSC---FTPD----AVTFTSLIKGLCAESRIMEAAALFTKLRVF-----G-CEPDV-FTYTTLVNG 67 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~~-~~~~~l~~~ 67 (487)
|++++|..++++++... ..|+ ..+++.|..+|...|++++|+.++++++.. | -.|+. .+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 78999999999987632 1122 567899999999999999999999998754 2 12333 368899999
Q ss_pred HHccCChHHHHHHHHHHHh
Q 011362 68 LCRTSHTIVALNLFEEMAN 86 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~ 86 (487)
|..+|++++|+.++++..+
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 9999999999999998765
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0018 Score=44.62 Aligned_cols=59 Identities=19% Similarity=0.099 Sum_probs=50.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
....+...|++++|+..|+++.+.. +.+.. .+..+..++...|++++|++.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5667888999999999999998875 45667 88888999999999999999999998866
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0027 Score=43.07 Aligned_cols=68 Identities=10% Similarity=0.046 Sum_probs=59.7
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 20 TPDAVTFTSLIKGLCAESR---IMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+.++..+..+..++...++ .++|..++++.++.. +.++.....+...+...|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5678889999998876555 799999999999986 6678888899999999999999999999999976
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.03 Score=46.52 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHHhCCCCCC---HhhHHHHHHHHHh-----cCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhC-CCh
Q 011362 115 VDKAKELLLQMKDKNIKPN---VVTYTSVIRGFCY-----AKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKN-GKM 185 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 185 (487)
...|...+++..+. .|+ ...|..+...|.. .|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45777788888775 344 5578888888888 499999999999999875443467777788888774 999
Q ss_pred HHHHHHHHHHHHCCCC--CCHHHHHH
Q 011362 186 DEASRLLDLMIQHGVR--PDAFTYNT 209 (487)
Q Consensus 186 ~~a~~~~~~~~~~~~~--~~~~~~~~ 209 (487)
+++.+.+++.+..... |+....+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 9999999999988665 55444443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00048 Score=47.65 Aligned_cols=76 Identities=8% Similarity=0.051 Sum_probs=58.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAV-TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
.|++++|+..|+.+++.. |.+.. .+..+..++...|++++|+..|+++.+.. +.+...+.. +.+.++..
T Consensus 13 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~~~~~a~~ 82 (99)
T 2kc7_A 13 QGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------KMVMDILN 82 (99)
T ss_dssp HTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------HHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------HHHHHHHH
Confidence 378999999999999986 44777 89999999999999999999999999875 333333321 44556666
Q ss_pred HHHHHHh
Q 011362 80 LFEEMAN 86 (487)
Q Consensus 80 ~~~~~~~ 86 (487)
.|++...
T Consensus 83 ~~~~~~~ 89 (99)
T 2kc7_A 83 FYNKDMY 89 (99)
T ss_dssp HHCCTTH
T ss_pred HHHHHhc
Confidence 6655443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.002 Score=58.20 Aligned_cols=99 Identities=10% Similarity=-0.022 Sum_probs=74.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCC-CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCHh
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNG-EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--IKPNVV 135 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~ 135 (487)
.+..+..+|++++|+.++++...... .+|...+....+++.++.+|...|++++|+.++++.+.. | .+....
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34556688999999999999887542 233223444678899999999999999999999887642 2 122344
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 136 TYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
+++.|...|...|++++|+.++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 678888999999999999998888765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.002 Score=47.69 Aligned_cols=87 Identities=14% Similarity=0.035 Sum_probs=50.2
Q ss_pred HHHHHHHhccCCCCCCcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHH
Q 011362 362 IALELFRSLPCGVLVPNVVTYSIMIGGLCNDG---QMDKARDLFLDMEENAVVP--NVITFDMLIRGFIRINEPSKVIEL 436 (487)
Q Consensus 362 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 436 (487)
.+.+-|.+....+ +++..+...+.+++++.+ ++++++.+++...+.. .| +...+-.+.-+|.+.|++++|++.
T Consensus 16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 3444444443333 356666666666777666 4556777777666643 23 234444555666777777777777
Q ss_pred HHHHHhcCCCCCHHHH
Q 011362 437 LHKMKEINVMPDASIV 452 (487)
Q Consensus 437 ~~~~~~~~~~~~~~~~ 452 (487)
++.+++ +.|+..-.
T Consensus 94 ~~~lL~--ieP~n~QA 107 (152)
T 1pc2_A 94 VRGLLQ--TEPQNNQA 107 (152)
T ss_dssp HHHHHH--HCTTCHHH
T ss_pred HHHHHh--cCCCCHHH
Confidence 777776 34554333
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0024 Score=47.26 Aligned_cols=83 Identities=13% Similarity=-0.061 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHccCChHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAES---RIMEAAALFTKLRVFGCEP--DVFTYTTLVNGLCRTSHTIVAL 78 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 78 (487)
...+.+.|...+..+. ++..+...+..++.+.+ ++++++.+++.+.+.+ .| ....+..+..++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4567788888888774 68888888999999988 6779999999999875 34 3556777888899999999999
Q ss_pred HHHHHHHhCC
Q 011362 79 NLFEEMANGN 88 (487)
Q Consensus 79 ~~~~~~~~~~ 88 (487)
+.++.+.+..
T Consensus 92 ~y~~~lL~ie 101 (152)
T 1pc2_A 92 KYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 9999999965
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00092 Score=60.33 Aligned_cols=93 Identities=5% Similarity=-0.137 Sum_probs=66.7
Q ss_pred ccCChHHHHHHHHHHHhCCC-CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----C--CCCCHhhHHHHH
Q 011362 70 RTSHTIVALNLFEEMANGNG-EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK-----N--IKPNVVTYTSVI 141 (487)
Q Consensus 70 ~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~ 141 (487)
..|++++|+.++++...... .+|...+....+++.|+.+|...|++++|+.++++.+.. | .+-...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999999888765321 122222334577888999999999999999988887542 2 112244678888
Q ss_pred HHHHhcCChhhHHHHHHHHHH
Q 011362 142 RGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~ 162 (487)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 888888998888888888754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0028 Score=57.31 Aligned_cols=105 Identities=11% Similarity=0.041 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC---CCCC----cHHHHHHHHHHHHccCCHHHHHHHHHHHHhC-----C-CCCC-HHH
Q 011362 351 IDGLCKSGRLEIALELFRSLPCG---VLVP----NVVTYSIMIGGLCNDGQMDKARDLFLDMEEN-----A-VVPN-VIT 416 (487)
Q Consensus 351 ~~~~~~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~ 416 (487)
+..+...|++++|..++++.... -+.| ...+++.++.+|...|++++|+.++++++.- | ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455678888888888776532 1122 2357788888888888888888888877531 2 1122 356
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh---cCCCCCHHHHHHH
Q 011362 417 FDMLIRGFIRINEPSKVIELLHKMKE---INVMPDASIVSIV 455 (487)
Q Consensus 417 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l 455 (487)
++.|...|...|++++|..+++++++ .-..|+......+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~ 415 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL 415 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence 77888888888888888888888763 2233554444333
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0055 Score=42.70 Aligned_cols=67 Identities=13% Similarity=-0.041 Sum_probs=56.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC------CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFG------CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+..-+..|+..+...|++..|+.+|+.+.+.. ..+...++..+..++.+.|+++.|+..++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 45566789999999999999999999988752 13456688899999999999999999999999865
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0049 Score=41.77 Aligned_cols=66 Identities=12% Similarity=-0.016 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHccCC---hHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 56 PDVFTYTTLVNGLCRTSH---TIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 56 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
.++..+..+..++...++ .++|..++++..+.+ |.++.....+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-------p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-------PYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444455555555443333 455666666655554 445555555555555566666666666655554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.1 Score=39.72 Aligned_cols=129 Identities=16% Similarity=0.150 Sum_probs=82.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
....+.|+++.|.++.+.+ .+...|..|.......|+++-|...|.+... +..+.-.|.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~~~L~~Ly~ 71 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------FDKLSFLYL 71 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------HHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------HHHHHHHHH
Confidence 4456778888888887665 3567788888888888888888888887543 334455566
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHH
Q 011362 111 KEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASR 190 (487)
Q Consensus 111 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 190 (487)
..|+.+...++-+.....| -++.....+...|+++++.++|.+.-+ -|. ........|..+.|.+
T Consensus 72 ~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~e------A~~~A~t~g~~~~a~~ 136 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPL------AYAVAKANGDEAAASA 136 (177)
T ss_dssp HHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHH------HHHHHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHH------HHHHHHHcCcHHHHHH
Confidence 6777777666655555443 244455556667888888888755432 111 1112223555667777
Q ss_pred HHHHH
Q 011362 191 LLDLM 195 (487)
Q Consensus 191 ~~~~~ 195 (487)
+.+.+
T Consensus 137 ~~~~~ 141 (177)
T 3mkq_B 137 FLEQA 141 (177)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 76654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.091 Score=52.32 Aligned_cols=47 Identities=15% Similarity=-0.057 Sum_probs=23.9
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcccc--cccccccc
Q 011362 422 RGFIRINEPSKVIELLHKMKEINVMPDA----SIVSIVVDLLAKNEIS--LNSLPSFT 473 (487)
Q Consensus 422 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~--~~~~~~~~ 473 (487)
+.|.+.+++++|..+-+. ..|.. .+.......+...|+. .+++..+.
T Consensus 757 ~~~~~~~~~~~A~~lA~~-----~~~~~~~i~~~~~~~~~~L~~~~~~~~a~~l~~~~ 809 (814)
T 3mkq_A 757 DLLIKSQRFSEAAFLGST-----YGLGDNEVNDIVTKWKENLILNGKNTVSERVCGAE 809 (814)
T ss_dssp HHHHHTTCHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHTTTCHHHHTTBCCGG
T ss_pred HHHHHcCChHHHHHHHHH-----hCCChHHHHHHHHHHHHHHHhccchhHHHhhCCcc
Confidence 334444445555444432 23444 5555666667777753 55555443
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.77 E-value=4.9e-05 Score=67.09 Aligned_cols=116 Identities=17% Similarity=0.202 Sum_probs=63.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
.+.+|..|..++...++..+|++.|=+ ..|+..|..++.+..+.|.+++-+..+.-..+.. .++..
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--------ke~~I 118 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--------RESYV 118 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--------CSTTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------ccccc
Confidence 355677777777777777777665532 2244456667777777777777777776555432 22333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHH
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFI 158 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 158 (487)
=+.|+-+|++.++..+..+.+ . .|+..-...+..-|...|.++.|.-+|.
T Consensus 119 DteLi~ayAk~~rL~elEefl----~---~~N~A~iq~VGDrcf~e~lYeAAKilys 168 (624)
T 3lvg_A 119 ETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYN 168 (624)
T ss_dssp THHHHHHHHTSCSSSTTTSTT----S---CCSSSCTHHHHHHHHHSCCSTTSSTTGG
T ss_pred HHHHHHHHHhhCcHHHHHHHH----c---CCCcccHHHHHHHHHHccCHHHHHHHHH
Confidence 345666666666654433322 1 1333333444444444554444444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.077 Score=52.82 Aligned_cols=75 Identities=12% Similarity=0.078 Sum_probs=39.5
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 011362 173 NVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKN 252 (487)
Q Consensus 173 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (487)
..++..+.+.|..+.|+++.+. .. .-.......|+++.|.++.+.+ .+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHc
Confidence 4455555566666665554421 10 0122234456666666654322 2445666666666666
Q ss_pred CCHhHHHHHHHHH
Q 011362 253 KEIEGALSLYSEM 265 (487)
Q Consensus 253 ~~~~~a~~~~~~~ 265 (487)
++++.|.++|.++
T Consensus 695 ~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 695 FNFKLAIEAFTNA 707 (814)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHc
Confidence 6666666666654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.016 Score=48.15 Aligned_cols=86 Identities=15% Similarity=0.128 Sum_probs=71.5
Q ss_pred ccchHHHHHHHHHhCCCCC-CHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc-CChH
Q 011362 3 RVSHGFVVLGRILKSCFTP-DAVTFTSLIKGLCA-----ESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT-SHTI 75 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 75 (487)
....|+..++++++.++.- +-.+|..+...|.. -|+.++|.+.|++.++.+..-+..++......++.. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 4568999999999986321 36689999999998 499999999999999986333477788888888885 9999
Q ss_pred HHHHHHHHHHhCC
Q 011362 76 VALNLFEEMANGN 88 (487)
Q Consensus 76 ~a~~~~~~~~~~~ 88 (487)
++.+.+++....+
T Consensus 258 ~a~~~L~kAL~a~ 270 (301)
T 3u64_A 258 GFDEALDRALAID 270 (301)
T ss_dssp HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999976
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.033 Score=38.64 Aligned_cols=61 Identities=11% Similarity=0.043 Sum_probs=32.4
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 382 YSIMIGGLCNDGQMDKARDLFLDMEENA------VVPNVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 382 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
...++..+...|++..|...|+.+.+.. -.+....+..+..++.+.|+++.|...++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3445555555555555555555554320 112344555555666666666666666666655
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.52 E-value=0.025 Score=41.30 Aligned_cols=117 Identities=17% Similarity=0.077 Sum_probs=73.9
Q ss_pred CCChHhHHHHHHHHHhcCCH------HHHHHHHHhccCCCCCCcHH-HHHHHHH------HHHccCCHHHHHHHHHHHHh
Q 011362 341 EFDIRAYNSLIDGLCKSGRL------EIALELFRSLPCGVLVPNVV-TYSIMIG------GLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 341 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~g~~~~A~~~~~~~~~ 407 (487)
+.|+.+|-..+....+.|++ ++..++|+++... ++|+.. .|...+. .+...+++++|..+|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34555555555555555666 6666666665543 344321 1111111 12334799999999999976
Q ss_pred CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 408 NAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (487)
.+-.. ...|......-.+.|+...|.+++.+.+..+. .+...+...+.-+.
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~-k~~~~le~a~~nl~ 139 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGA-VPLEMLEIALRNLN 139 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-BCHHHHHHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCC-CcHHHHHHHHHhhh
Confidence 53333 77777777777899999999999999998773 34555555555443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.21 Score=37.99 Aligned_cols=130 Identities=13% Similarity=0.125 Sum_probs=89.3
Q ss_pred HHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHH
Q 011362 65 VNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGF 144 (487)
Q Consensus 65 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 144 (487)
+......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|
T Consensus 12 F~LAL~lg~l~~A~e~a~~l------------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly 70 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL------------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLY 70 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh------------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHH
Confidence 34456789999999887765 2467899999999999999999999887653 44566667
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHH
Q 011362 145 CYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAK 224 (487)
Q Consensus 145 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 224 (487)
...|+.+...++-+.....| -++....++.-.|+++++.++|... |..|... ......|..+.|.
T Consensus 71 ~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 71 LVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAAS 135 (177)
T ss_dssp HHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHH
Confidence 77888877776665555443 2566666777889999998888554 3222221 1122356677777
Q ss_pred HHHHHH
Q 011362 225 ELFVSM 230 (487)
Q Consensus 225 ~~~~~~ 230 (487)
++.+.+
T Consensus 136 ~~~~~~ 141 (177)
T 3mkq_B 136 AFLEQA 141 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 777665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.30 E-value=0.1 Score=38.11 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC
Q 011362 288 HQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK 339 (487)
Q Consensus 288 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 339 (487)
++.++|.++|+.+++.+-.- ...+....+.-.++|+...|.+++...+..+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 44455555555544332111 3333333444445555555555555555443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.032 Score=39.66 Aligned_cols=65 Identities=14% Similarity=0.013 Sum_probs=28.2
Q ss_pred CcHHHHHHHHHHHHccCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 377 PNVVTYSIMIGGLCNDGQMDK---ARDLFLDMEENAVVP--NVITFDMLIRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
|+..+-..+.+++.+..+... ++.+++...+.+ .| .....-.|.-++.+.|++++|++.++.+++
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 444444444432 11 122223334445555555555555555554
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.08 E-value=1.5e-06 Score=76.30 Aligned_cols=265 Identities=12% Similarity=0.125 Sum_probs=166.9
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 98 NTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 98 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
.+..|..|..+....++..+|++.|- +. -|+..|..++....+.|.+++-.+.+....+..- ++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyI---kA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYI---KA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSC---CC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHH---hC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHH
Confidence 35678888888888888887776652 22 1566788888888888999988888876665432 3444467888
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEG 257 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 257 (487)
+|++.++..+..+++. .|+..-......-|...|.++.|.-+|..+. -|..|..++.+.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHH
Confidence 8888888766554442 3455556667777888888887777664432 23445555666777766
Q ss_pred HHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHH
Q 011362 258 ALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRI 337 (487)
Q Consensus 258 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 337 (487)
|.+.-++ ..++.+|..+-.+|...+.+.-|...--.+.-. ++ -+..++..|...|.+++-+.+++....
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 6544322 236667888777887777776655443333321 11 233455667777888887777777764
Q ss_pred cCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCC-CCCC------cHHHHHHHHHHHHccCCHHHHH
Q 011362 338 LKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCG-VLVP------NVVTYSIMIGGLCNDGQMDKAR 399 (487)
Q Consensus 338 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~A~ 399 (487)
.. ....-.|+.|.-.|++- ++++-.+.++..-.. +++. ....|..++..|.+-.+++.|.
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 33 45666777777777664 455555555544321 2111 2334666666666666666554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.08 E-value=0.043 Score=39.03 Aligned_cols=84 Identities=8% Similarity=-0.050 Sum_probs=59.8
Q ss_pred CCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHH---HHHHHHhccCCCCCC--cHHHHHHHHHHHHccCCHHH
Q 011362 323 GYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEI---ALELFRSLPCGVLVP--NVVTYSIMIGGLCNDGQMDK 397 (487)
Q Consensus 323 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~ 397 (487)
.....+.+-|......+ .++..+--.+.+++.++.+... ++.+++.+...+ .| .......+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 34455555666555545 4777777778888888777655 888888887763 23 33455667778889999999
Q ss_pred HHHHHHHHHhC
Q 011362 398 ARDLFLDMEEN 408 (487)
Q Consensus 398 A~~~~~~~~~~ 408 (487)
|.+.++.+++.
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998884
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=95.89 E-value=1.5 Score=43.29 Aligned_cols=260 Identities=11% Similarity=-0.009 Sum_probs=123.3
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhH--HHHHHHHHhCCChHHHHHHHHHHHHCCC-------CCCHHHHH--HH
Q 011362 142 RGFCYAKDWNEAKRLFIEMMDQGVQPNVVTF--NVIMDELCKNGKMDEASRLLDLMIQHGV-------RPDAFTYN--TL 210 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~--~l 210 (487)
-+....|+.++++.++......+...+..+- ..+.-+....|..+++..++...+...- .+....-. .|
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 3455677777777777665432101122221 2222344455555566666655544311 01111122 23
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCH--hhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcC
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMGCKHTV--FSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIH 288 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 288 (487)
..++.-.++. ++.+.+..+.... .... ..-..+...++-.|+.+....++..+.+.. ..+..-...+.-++...|
T Consensus 462 Gla~~GS~~e-ev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 462 GLAAMGSANI-EVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHHSTTCCCH-HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTT
T ss_pred HHHhcCCCCH-HHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCC
Confidence 3333334443 3444444444322 1111 112233444556677776677766666532 112222222333334567
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHh--HHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 011362 289 QVERAFKLFDEMQRNGVAADTWT--YRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALEL 366 (487)
Q Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 366 (487)
+.+.+..+++.+.... .|.... ...+.-+|+..|+......+++.+.... ..++.....+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 7777777777666531 222211 1233345667777666666777766432 23333333444445556666666777
Q ss_pred HHhccCCCCCCcHHHHHHHHHHHHccCCH-HHHHHHHHHHHh
Q 011362 367 FRSLPCGVLVPNVVTYSIMIGGLCNDGQM-DKARDLFLDMEE 407 (487)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 407 (487)
++.+.+.+ .|.+.--..+.-+....|.. .++..++..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 76666543 34443333333334444443 566777777764
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.34 Score=34.66 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=79.7
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHH
Q 011362 110 CKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEAS 189 (487)
Q Consensus 110 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 189 (487)
.-.|..++..++..+..... +..-++-++--....-+-+-..+.++.+=+. .|.. ..|+.....
T Consensus 18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi 81 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV 81 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence 34677788888887776642 4555555555555555555555555544321 1221 122333333
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCC
Q 011362 190 RLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKG 269 (487)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 269 (487)
..+-.+ ..+...+...+......|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.+.-+.|
T Consensus 82 ~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 82 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 332221 113344445566666777777777777775432 36667777777777777777777777777777766
Q ss_pred Cc
Q 011362 270 IK 271 (487)
Q Consensus 270 ~~ 271 (487)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 54
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.49 E-value=1.4 Score=39.93 Aligned_cols=192 Identities=9% Similarity=0.084 Sum_probs=111.1
Q ss_pred CccchHHHHHHHHHhC-----CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----HccC
Q 011362 2 GRVSHGFVVLGRILKS-----CFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGL----CRTS 72 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g 72 (487)
|++++|++.+-.+.+. +..........++..|...|+++...+.+.-+....... ......+++.+ ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence 4566777776555432 223346667888999999999999888777665442222 22223333322 2222
Q ss_pred ChH--HHHHHHHHHHhCCCCCcccccc---chHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCC---CHhhHHHHHH
Q 011362 73 HTI--VALNLFEEMANGNGEFGVVCEP---NTVTYTTIIDGLCKEGFVDKAKELLLQMKDK--NIKP---NVVTYTSVIR 142 (487)
Q Consensus 73 ~~~--~a~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~---~~~~~~~l~~ 142 (487)
..+ .-..+.+.+..... |. +-. .......|...+...|++.+|.+++..+... |... -...+...++
T Consensus 109 ~~d~~~~~~~i~~l~~vte--~k-iflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~r 185 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTE--NK-IFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQME 185 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSS--CC-CCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhc--cc-hHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 222 22222222211110 00 001 2344567788888899999999998887532 2111 1346677788
Q ss_pred HHHhcCChhhHHHHHHHHHH----cCCCCC--hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 011362 143 GFCYAKDWNEAKRLFIEMMD----QGVQPN--VVTFNVIMDELCKNGKMDEASRLLDLMIQ 197 (487)
Q Consensus 143 ~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 197 (487)
.|...+++.+|..++.++.. ....|+ ...+...+..+...+++.+|.+.|..+..
T Consensus 186 l~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 186 LSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 88889999999888887642 111121 12345556677778888888777766643
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.59 Score=33.48 Aligned_cols=68 Identities=12% Similarity=0.063 Sum_probs=54.9
Q ss_pred cHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011362 378 NVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVM 446 (487)
Q Consensus 378 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (487)
+...++..+.....+|+-++-.+++..+... .+|++..+..+..+|.+.|+..++.+++.++-+.|++
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 3445566677888899999999998886543 5678888889999999999999999999999988853
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.03 E-value=2 Score=39.00 Aligned_cols=189 Identities=11% Similarity=0.012 Sum_probs=102.6
Q ss_pred cCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH---
Q 011362 36 ESRIMEAAALFTKLRVF-----GCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID--- 107 (487)
Q Consensus 36 ~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--- 107 (487)
.|++++|++.+-.+.+. +..........++..|...|+++...+.+..+.+..+ ........+++
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~-------qlk~ai~~~V~~~~ 101 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHG-------QLKLSIQYMIQKVM 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTT-------TSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhh-------hhHHHHHHHHHHHH
Confidence 36788888877665532 2234556677888999999999998888877776552 11222233333
Q ss_pred -HHHhcCChhH--HHHHHHHHHhC--C-CCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC-C----hhhHH
Q 011362 108 -GLCKEGFVDK--AKELLLQMKDK--N-IKP---NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQP-N----VVTFN 173 (487)
Q Consensus 108 -~~~~~g~~~~--a~~~~~~~~~~--~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~ 173 (487)
........+. -..+.+.+... | +-. .......|...+...|++.+|.+++..+...-... + ...+.
T Consensus 102 ~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l 181 (445)
T 4b4t_P 102 EYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFIL 181 (445)
T ss_dssp HHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHH
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 2222333222 12222211110 1 101 11223456777777888888888887775421111 1 23445
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHcCCCHhHHHHHHHHHH
Q 011362 174 VIMDELCKNGKMDEASRLLDLMIQ----HGVRPD--AFTYNTLLDGFCLTGRVNHAKELFVSME 231 (487)
Q Consensus 174 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 231 (487)
..++.|...+++..|..++..+.. ....|+ ...+...+..+...+++.+|-+.|.++.
T Consensus 182 ~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 182 EQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 556677777777777777766532 111222 1234445555566666666666555543
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.43 E-value=0.32 Score=43.24 Aligned_cols=58 Identities=9% Similarity=0.067 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 011362 347 YNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDM 405 (487)
Q Consensus 347 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 405 (487)
...++..+...|+++++...++.+.... +-+...|..++.++...|+..+|++.|+++
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3344445555555555555555554432 334445555555565666666665555554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.25 E-value=0.97 Score=32.81 Aligned_cols=74 Identities=12% Similarity=0.072 Sum_probs=45.3
Q ss_pred CCcHHHHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHH
Q 011362 376 VPNVVTYSIMIGGLCNDGQM---DKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASI 451 (487)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 451 (487)
.|+..+-..+.+++.+..+. .+++.+++.+.+.+..-.....-.+.-++.+.|++++|++..+.+++ +.|+..-
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcHH
Confidence 45666666666777666543 45666777766543222334444556677777778778777777777 4565433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.67 Score=33.15 Aligned_cols=75 Identities=13% Similarity=0.070 Sum_probs=44.4
Q ss_pred CCcHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 011362 376 VPNVVTYSIMIGGLCNDGQ---MDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIV 452 (487)
Q Consensus 376 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 452 (487)
.|+..+-..+.+++.+..+ ..+++.+++.+.+.+..-....+-.+.-++.+.|++++|++..+.+++ +.|+..-.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~QA 114 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 114 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHHH
Confidence 4566665566666666554 345666666666543211234455566667777777777777777776 45554433
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.63 Score=44.96 Aligned_cols=50 Identities=8% Similarity=0.016 Sum_probs=40.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhccc
Q 011362 413 NVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEI 464 (487)
Q Consensus 413 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 464 (487)
+..-|..|.....+.+++++|.+.|+..+.. +-++..+..+++.|.+.+.
T Consensus 612 s~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~ 661 (754)
T 4gns_B 612 SGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPK 661 (754)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCS
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCc
Confidence 4455888888888899999999999998874 5788888999999887653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.61 Score=45.05 Aligned_cols=131 Identities=10% Similarity=0.006 Sum_probs=80.2
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHhcCCCCCHHHHH--HHHHHHHccCC-hHHHHHHHHHHHhC-------CCCCcc--
Q 011362 27 TSLIKGLCAESR-IMEAAALFTKLRVFGCEPDVFTYT--TLVNGLCRTSH-TIVALNLFEEMANG-------NGEFGV-- 93 (487)
Q Consensus 27 ~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~-~~~a~~~~~~~~~~-------~~~~~~-- 93 (487)
..++..+...|+ .+.|+.+|+++.... |...++. .++..+...++ --+|.+++.+..+. -+....
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 445555556666 588999999998873 4444332 33333333332 23456655554421 100000
Q ss_pred --ccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 94 --VCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 94 --~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
..+........=...+...|+++-|+++-++.... .|.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 00001112223345677789999999999988876 3446789999999999999999999888775
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.33 Score=43.15 Aligned_cols=72 Identities=11% Similarity=0.071 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD-----QGVQPNVVTFN 173 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 173 (487)
+...++..+...|+.+++...+..+... .+.+...|..++.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 4445566666777777777776666655 345666777777777777777777777766543 36777666543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=93.33 E-value=7 Score=38.84 Aligned_cols=275 Identities=9% Similarity=0.014 Sum_probs=155.3
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcCCCHhHHHHHHHHHHHcCC-------CCCHhhHHH--HH
Q 011362 178 ELCKNGKMDEASRLLDLMIQHGVRPDA--FTYNTLLDGFCLTGRVNHAKELFVSMESMGC-------KHTVFSYSI--LI 246 (487)
Q Consensus 178 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~--l~ 246 (487)
+....|+.++++.++......+...+. ..-..+.-+....|..+++..++.......- .+....-.. |.
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 566788989998888776542111232 2333344445556655677777777654321 011122223 33
Q ss_pred HHHHccCCHhHHHHHHHHHHHCCCccCh--hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHH--HHHHHhC
Q 011362 247 NGYCKNKEIEGALSLYSEMLSKGIKPDV--VIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTF--IDGLCKN 322 (487)
Q Consensus 247 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~ 322 (487)
.+|.-.++ +++.+.+..+....-. .. ..-..+...+...|+.+....++..+.+.. +......+ .-++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 33344444 3555666665553211 11 122233344557788888888888777642 33333333 3445578
Q ss_pred CCHhHHHHHHHHHHHcCCCCChHhH--HHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHH
Q 011362 323 GYIVEAVELFHTLRILKCEFDIRAY--NSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARD 400 (487)
Q Consensus 323 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 400 (487)
|+.+.+..+.+.+.... .|....- ..+.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 99999999988887642 3333322 234556778899888888988887531 2333333344445556777777888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcc
Q 011362 401 LFLDMEENAVVPNVITFDMLIRGFIRINEP-SKVIELLHKMKEINVMPDASIVSIVVDLLAKNE 463 (487)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 463 (487)
+++.+.+.+ .|....-..+.-+....|.. .++...+..+.. .+|..+-...+.+++..|
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG~Ig 675 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALSMIL 675 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHS
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHHHHh
Confidence 887666643 34444334444444555544 567888888864 456665555555555544
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.00 E-value=1.1 Score=32.07 Aligned_cols=71 Identities=10% Similarity=-0.015 Sum_probs=55.6
Q ss_pred CCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 18 CFTPDAVTFTSLIKGLCAESRI---MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 18 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+..|+..+--.+..++.+..+. .+++.+++.+.+.+.......+..+.-++.+.|++++|.+..+.+.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 3456777777788888888755 4689999999887522234566778889999999999999999999975
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.89 E-value=0.7 Score=34.59 Aligned_cols=64 Identities=9% Similarity=0.098 Sum_probs=47.5
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CCCCH-------HHHHHHHHHHHccCChHHHHHHHHHHHh
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFG-CEPDV-------FTYTTLVNGLCRTSHTIVALNLFEEMAN 86 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 86 (487)
.-++..-+..+...|.++.|+-+.+.+.... ..|+. .++..+..++...|++.+|...|++..+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 3345556788899999999999888866542 12331 2566778899999999999999999654
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=92.56 E-value=1.6 Score=29.34 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
+.-+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++-.+..- .+...+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 444566666677666777777777777777777777777777777776432 333455655554
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=92.22 E-value=12 Score=38.77 Aligned_cols=167 Identities=12% Similarity=0.126 Sum_probs=94.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
..++..+...+.++-|.++.... +.++..-..++.++...|++++|.+.|++....-. ......
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~-------~~~~l~---- 879 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLY-------SHTSQF---- 879 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCT-------TCCCSC----
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhc-------ccchhh----
Confidence 44667778888888877765543 33445456678899999999999999987643210 000000
Q ss_pred HHHHhcCChhHHHHHHHHHHhCC--CCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCh----hhHHHHHHHHH
Q 011362 107 DGLCKEGFVDKAKELLLQMKDKN--IKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNV----VTFNVIMDELC 180 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 180 (487)
..... +..+.... ...-...|..++..+.+.+.++.+.+.-...++...+.+. ..|..+.+.+.
T Consensus 880 ------~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L 949 (1139)
T 4fhn_B 880 ------AVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTAC 949 (1139)
T ss_dssp ------SSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHH
T ss_pred ------hhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHH
Confidence 00000 11111110 0112345666677777777777777766665554222111 24566777777
Q ss_pred hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHh
Q 011362 181 KNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVN 221 (487)
Q Consensus 181 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 221 (487)
..|++++|...+-.+..... -......|+...+..|..+
T Consensus 950 ~l~~ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 950 AAGKFDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHCCSGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHH
T ss_pred hhCCHHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChh
Confidence 77888887777766655433 2445555655555555433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.75 E-value=0.75 Score=34.42 Aligned_cols=86 Identities=10% Similarity=0.062 Sum_probs=59.7
Q ss_pred CccchHHHHHHHHHhCC-CCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC--------------------
Q 011362 2 GRVSHGFVVLGRILKSC-FTPDA-------VTFTSLIKGLCAESRIMEAAALFTKLRVFG-------------------- 53 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------- 53 (487)
|.|+.|.-+.+.++... .+|++ .++..+..++...|+|.+|...|++.++..
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p 113 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTP 113 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCc
Confidence 45666666666654432 12331 255667889999999999999999964321
Q ss_pred ----CCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 54 ----CEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 54 ----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
...+.+.-..+..+|.+.+++++|+.+++.++..
T Consensus 114 ~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 114 QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 0112245556888999999999999999998664
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=91.16 E-value=3.1 Score=29.74 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=44.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDL 458 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (487)
|.-+..+-++.+....+.|++.+....+++|.+.+|+.-|.++++-.+.+- .+...+|..++.-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHHH
Confidence 344566666777777777888888888888888888888888888777542 3445566666543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.65 E-value=5.9 Score=41.04 Aligned_cols=150 Identities=13% Similarity=-0.030 Sum_probs=101.1
Q ss_pred HHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCC----C-------------
Q 011362 313 RTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGV----L------------- 375 (487)
Q Consensus 313 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~------------- 375 (487)
..++..+...+..+-+.++..-. +.++..--.++.+|...|++++|.+.|++....- .
T Consensus 816 ~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 816 TELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 34555566667766665544322 3344444566777888999999999998764210 0
Q ss_pred -----CCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011362 376 -----VPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNV----ITFDMLIRGFIRINEPSKVIELLHKMKEINVM 446 (487)
Q Consensus 376 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (487)
..-..-|..++..|.+.|.++.+.++-+.+++.....+. ..|..+.+.+...|++++|...+-.+....
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-- 968 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-- 968 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--
Confidence 001123667778888899999999888877654222222 257788899999999999999998887643
Q ss_pred CCHHHHHHHHHHHHhcccccccc
Q 011362 447 PDASIVSIVVDLLAKNEISLNSL 469 (487)
Q Consensus 447 ~~~~~~~~l~~~~~~~g~~~~~~ 469 (487)
--...+..++..++..|.....+
T Consensus 969 ~r~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 969 LKKSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp SCHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCChhhhh
Confidence 34677888888888877764444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=90.61 E-value=7.2 Score=33.07 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=25.7
Q ss_pred cchHHHHHHHHHhCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHH
Q 011362 4 VSHGFVVLGRILKSCFTPD-AVTFTSLIKGLCAESRIMEAAALFTK 48 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 48 (487)
+++.++-++.-++.|---. -..|.++..-|.+++++++|++++..
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 3444445555555541111 23466667777777778877777654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=89.12 E-value=9.5 Score=32.32 Aligned_cols=167 Identities=19% Similarity=0.131 Sum_probs=89.2
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHH----HHHHHHhCCCCCCHh
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKE----LLLQMKDKNIKPNVV 135 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~ 135 (487)
.|.++..-|.+++++++|++++..-.. .+.+.|+...|.+ +++.+.+.+++++..
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~ 93 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGAL---------------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDI 93 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH
Confidence 345566667778888888887665332 2334455544444 345555567777777
Q ss_pred hHHHHHHHHHhcCChh-hHHHHHHHHHH----cC--CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 011362 136 TYTSVIRGFCYAKDWN-EAKRLFIEMMD----QG--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYN 208 (487)
Q Consensus 136 ~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 208 (487)
....++..+.....-+ .-.++++.+++ .| ..-++.....+...|.+.+++.+|...|-. |..-+...+.
T Consensus 94 ~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a 169 (312)
T 2wpv_A 94 SVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYV 169 (312)
T ss_dssp HHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHH
Confidence 7777777665533211 12233333332 22 223566677777888888888887776631 1111344444
Q ss_pred HHHHHHHcC---CCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHH
Q 011362 209 TLLDGFCLT---GRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEML 266 (487)
Q Consensus 209 ~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 266 (487)
.++.-+... |...++-- ..-.. +-.|...++...|..+++...
T Consensus 170 ~~l~~w~~~~~~~~~~e~dl--------------f~~Ra-VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 170 DLLWDWLCQVDDIEDSTVAE--------------FFSRL-VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHTTCCCHHHHHH--------------HHHHH-HHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcchHHH--------------HHHHH-HHHHHHhcCHHHHHHHHHHHH
Confidence 444433332 32222111 11111 223445677888877777654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.85 E-value=1.7 Score=35.64 Aligned_cols=57 Identities=14% Similarity=0.070 Sum_probs=40.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 31 KGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 31 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
..+.+.|++++|++....-++.. +.|...-..++..+|-.|++++|.+-++.+.+..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~ 61 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF 61 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 34566777777777777766664 5566666677777777888888877777776654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.13 E-value=6.5 Score=35.40 Aligned_cols=60 Identities=13% Similarity=0.065 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDK--NIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
+...++..|.+.|+++.|.+.|.++... +..--...+..+++.+...++|..+...+.++
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3444555555555555555555555432 11122334444555555555555555555554
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.93 E-value=6.2 Score=28.68 Aligned_cols=69 Identities=10% Similarity=0.013 Sum_probs=54.7
Q ss_pred CCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 20 TPDAVTFTSLIKGLCAESRI---MEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
.|+..+--.+..++.+..+. .+++.+++.+.+.+..........+.-++.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 56777777788888888755 4788999999886532344456678889999999999999999999975
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.33 E-value=20 Score=33.97 Aligned_cols=80 Identities=9% Similarity=-0.043 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDEL 179 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 179 (487)
..-...+..+.+.+++...+..+.. .+.+...-.....+....|+..+|......+-..|.. .+..+..++..+
T Consensus 73 ~Lr~~~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~ 146 (618)
T 1qsa_A 73 TLQSRFVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHH
Confidence 3445556666677777666654332 2335555556666777778777777766666555432 445566666666
Q ss_pred HhCCCh
Q 011362 180 CKNGKM 185 (487)
Q Consensus 180 ~~~~~~ 185 (487)
.+.|..
T Consensus 147 ~~~g~l 152 (618)
T 1qsa_A 147 RASGKQ 152 (618)
T ss_dssp HHTTCS
T ss_pred HHCCCC
Confidence 655544
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=87.06 E-value=21 Score=33.87 Aligned_cols=333 Identities=10% Similarity=-0.009 Sum_probs=165.9
Q ss_pred HHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011362 62 TTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVI 141 (487)
Q Consensus 62 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 141 (487)
...+..+.+.+++...+.++.. .|.+...-.....+....|+..+|......+-..|. ..+..+..++
T Consensus 76 ~~~l~~l~~~~~w~~~l~~~~~-----------~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~ 143 (618)
T 1qsa_A 76 SRFVNELARREDWRGLLAFSPE-----------KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLF 143 (618)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCS-----------CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHhccC-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHH
Confidence 3455566677777766654432 145667777788888889998888888877766653 3556777788
Q ss_pred HHHHhcCChhh--HHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-----------
Q 011362 142 RGFCYAKDWNE--AKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYN----------- 208 (487)
Q Consensus 142 ~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 208 (487)
..+.+.|.... ...-++.+...| +...-..++... . .+.....+.+..+.+. +++.....
T Consensus 144 ~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~--p~~~~~~~~~~~~~~~~~~ 216 (618)
T 1qsa_A 144 SVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANN--PNTVLTFARTTGATDFTRQ 216 (618)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHC--GGGHHHHHHHSCCCHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhC--hHhHHHHHhccCCChhhHH
Confidence 88877665543 333333334332 222222222211 1 1122122222333332 12222111
Q ss_pred ---HHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHH----HHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHH
Q 011362 209 ---TLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSI----LINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLF 281 (487)
Q Consensus 209 ---~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 281 (487)
..+.-+.+ .+.+.|...+....+.. ..+...... ++......+...++...+....... .+.....-.+
T Consensus 217 ~~~~~~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~ 292 (618)
T 1qsa_A 217 MAAVAFASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRV 292 (618)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHH
Confidence 01112222 36677777777775433 223322222 2222233443455666666554432 2333344444
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHH
Q 011362 282 VGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLE 361 (487)
Q Consensus 282 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 361 (487)
....+.++++.|...|..+.... .......--+.+++...|+.++|..+|..+... .+ .|..+. ..+.|..-
T Consensus 293 r~Alr~~d~~~a~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~ 364 (618)
T 1qsa_A 293 RMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEY 364 (618)
T ss_dssp HHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCC
T ss_pred HHHHHCCCHHHHHHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCC
Confidence 45557788888888887765431 112333445566777788888888888887631 11 222221 12223210
Q ss_pred HHHHHHHhccCCCCCC---cH---HHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 011362 362 IALELFRSLPCGVLVP---NV---VTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIE 435 (487)
Q Consensus 362 ~a~~~~~~~~~~~~~~---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 435 (487)
. +......+ .. ..-..-+..+...|....|...|..+... . +......+.......|.+..+..
T Consensus 365 ~-------~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~ 434 (618)
T 1qsa_A 365 E-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQ 434 (618)
T ss_dssp C-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred C-------CCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHH
Confidence 0 00000001 00 01112344566788888888888877754 2 33323344444445555555443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=86.92 E-value=14 Score=31.64 Aligned_cols=167 Identities=12% Similarity=0.157 Sum_probs=88.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHH----HHHHHhCCCCCCHhh
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKEL----LLQMKDKNIKPNVVT 136 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~~~~~~~~~~~~ 136 (487)
|.++..-|.+++++++|++++..-.. .+.+.|+...+.++ ++.+.+.+++++...
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~ 96 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVSQ---------------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGAS 96 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHH---------------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 44566667788888888887655322 23334444433333 244445566666666
Q ss_pred HHHHHHHHHhcCChh-hHHHHHHHHHH----cC--CCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 011362 137 YTSVIRGFCYAKDWN-EAKRLFIEMMD----QG--VQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNT 209 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 209 (487)
...++..+.....-+ .=.++.+++++ .| ..-++.....+...|.+.+++.+|...|- .|..+++..+..
T Consensus 97 ~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~ 172 (336)
T 3lpz_A 97 RGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLAR 172 (336)
T ss_dssp HHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHH
Confidence 666666665444311 11222222222 22 23466677778888888888888887772 133333356655
Q ss_pred HHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 210 LLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 210 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
++.-+...+...++ +...-.. +-.|...++...|..+++...+
T Consensus 173 mL~ew~~~~~~~e~--------------dlfiaRa-VL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 173 MEYEWYKQDESHTA--------------PLYCARA-VLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHHHTSCGGGH--------------HHHHHHH-HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCccH--------------HHHHHHH-HHHHHHhCCHHHHHHHHHHHHH
Confidence 55444443332211 1112222 2235556777778776665543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.52 E-value=5.6 Score=26.76 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=44.1
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHH
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMD 177 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 177 (487)
+.-+..+-++.+....+.|++.+....+++|.+.+++..|.++|+-++.. ......+|..++.
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence 34466677777777777888888888888888888888888888877654 2223444655543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.44 E-value=4.1 Score=36.72 Aligned_cols=99 Identities=12% Similarity=-0.060 Sum_probs=50.0
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCCHhh
Q 011362 60 TYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKD---KNIKPNVVT 136 (487)
Q Consensus 60 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~ 136 (487)
+...++..|.+.|+++.|.+.|.++...-.. ...-...+...++.+...+++..+...+.++.. .+..|+...
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~----~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~ 208 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS----TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRN 208 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC----CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHH
Confidence 3445556666666666666666655542211 134455666666666666666666666655532 122222111
Q ss_pred --HHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 137 --YTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 137 --~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
...-+..+...++|..|.+.|-+...
T Consensus 209 ~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 209 RYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 11112233456667777666666544
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=83.23 E-value=18 Score=29.74 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=75.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH----HHHHHHHHHHccCChHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF----TYTTLVNGLCRTSHTIV 76 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~ 76 (487)
.|++++|++....-++.. |-|...-..+++.++-.|++++|.+-++.+.+. .|+.. .|..+|.+
T Consensus 10 ~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a--------- 77 (273)
T 1zbp_A 10 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA--------- 77 (273)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH---------
T ss_pred CCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH---------
Confidence 478899999999999996 558888899999999999999999999998876 34433 34444432
Q ss_pred HHHHHHHHHhCCCCCccccccchHHHHHHHHHHH--hcCChhHHHHHHHHHHhC
Q 011362 77 ALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC--KEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 77 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~ 128 (487)
...=..+...+...+. +.....-...++.+.. ..|+.++|.++-..+.+.
T Consensus 78 -E~~R~~vfaG~~~P~~-~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -AQARKDFAQGAATAKV-LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -HHHHHHHTTSCCCEEC-CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCCCCCC-CCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2333333333321111 1122233444555443 458899888888777553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.06 E-value=11 Score=27.06 Aligned_cols=61 Identities=11% Similarity=0.203 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 115 VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
.-+..+-++.+...++.|++......+++|.+.+|+..|.++|+-++.. ..+...+|..++
T Consensus 69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 3345566666666777788888888888888888888888888777554 233344555554
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=82.91 E-value=22 Score=30.47 Aligned_cols=166 Identities=10% Similarity=-0.009 Sum_probs=88.3
Q ss_pred HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHH----HHHHHHcCCCCcHHhHHHHHH
Q 011362 242 YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKL----FDEMQRNGVAADTWTYRTFID 317 (487)
Q Consensus 242 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----~~~~~~~~~~~~~~~~~~l~~ 317 (487)
|.++..-|.+.+++++|++++..-. ..+.+.|+...+.++ ++...+.+++++......++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3444555677777777777654422 123344444433333 344455566677666666666
Q ss_pred HHHhCCCHh-HHHHHHHHHH----HcC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHH
Q 011362 318 GLCKNGYIV-EAVELFHTLR----ILK--CEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLC 390 (487)
Q Consensus 318 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 390 (487)
.+.....-+ .=..+.+.++ +.+ ..-|+.....+...|.+.+++.+|...|- . +..++...+..++.-+.
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHH
Confidence 655444211 1122222222 112 23467777888889999999999988873 2 22344466655555444
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 011362 391 NDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK 441 (487)
Q Consensus 391 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 441 (487)
..+...++--++ ...+--|...++...|..+++...
T Consensus 179 ~~~~~~e~dlfi---------------aRaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 179 KQDESHTAPLYC---------------ARAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HTSCGGGHHHHH---------------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcCCccHHHHH---------------HHHHHHHHHhCCHHHHHHHHHHHH
Confidence 443322222211 122223556677777777665554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=82.68 E-value=25 Score=31.04 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=14.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHH
Q 011362 171 TFNVIMDELCKNGKMDEASRLLDLM 195 (487)
Q Consensus 171 ~~~~l~~~~~~~~~~~~a~~~~~~~ 195 (487)
....+...|.+.|+.++...++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445556666666666666665544
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.42 E-value=17 Score=28.28 Aligned_cols=56 Identities=23% Similarity=0.157 Sum_probs=34.4
Q ss_pred CChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 011362 72 SHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKP 132 (487)
Q Consensus 72 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 132 (487)
+....+..+|..|...+. ...-...|......+...|++.+|.++|+.-++.+..|
T Consensus 93 ~~~~~p~~if~~L~~~~I-----G~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGI-----GTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTS-----STTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCC-----cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566667766666552 13345566666666666777777777777666665554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 487 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-07 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.8 bits (120), Expect = 2e-07
Identities = 39/247 (15%), Positives = 82/247 (33%), Gaps = 9/247 (3%)
Query: 124 QMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNG 183
+ P++ S + A E + + V ++ + G
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG 183
Query: 184 KMDEASRLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242
++ A + + + P+ Y L + + A ++ S+ H +
Sbjct: 184 EIWLAIHHFEKAVT--LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-AVVH 240
Query: 243 SILINGYCKNKEIEGALSLYSEMLSKGIKPDVV-IHNTLFVGLFEIHQVERAFKLFDEMQ 301
L Y + I+ A+ Y + ++P + L L E V A ++
Sbjct: 241 GNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298
Query: 302 RNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLE 361
R + + + G I EAV L+ + E A+++L L + G+L+
Sbjct: 299 RL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQ 356
Query: 362 IALELFR 368
AL ++
Sbjct: 357 EALMHYK 363
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 487 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.73 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.72 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.44 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.41 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.39 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.38 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.34 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.33 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.32 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.32 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.29 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.29 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.04 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.91 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.9 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.89 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.88 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.83 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.78 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.72 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.71 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.68 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.6 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.59 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.55 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.44 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.41 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.39 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.35 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.3 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.3 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.29 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.24 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.23 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.21 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.21 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.16 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.15 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.13 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.13 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.1 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.08 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.71 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.69 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.65 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.62 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.34 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.27 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.61 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.86 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.47 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.37 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.76 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 93.3 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 92.41 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.28 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=4.3e-25 Score=198.88 Aligned_cols=383 Identities=14% Similarity=0.090 Sum_probs=269.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 29 LIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 29 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
+...+.+.|++++|++.++++.+.. |.+..++..++.++...|++++|+..|+++.+.. |.+..++..++.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~l~~~ 76 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-------PLLAEAYSNLGNV 76 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHH
Confidence 4566778889999999888888764 4467778888888888899999999988888765 5667788888888
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEA 188 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 188 (487)
+.+.|++++|++.+....... +.+..............+....+............. ...............+....+
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 154 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEA 154 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHH
T ss_pred hhhhccccccccccccccccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhh
Confidence 888888888888888887764 334555555555666666666666666655554332 344444555566677777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 189 SRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
...+....... +.+...+..+...+...|++++|...++...+.. |.+...+..+...+...|++++|...+.+....
T Consensus 155 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 232 (388)
T d1w3ba_ 155 KACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH
Confidence 77777766553 2356677777788888888888888888877664 456667777888888888888888888777765
Q ss_pred CCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHH
Q 011362 269 GIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYN 348 (487)
Q Consensus 269 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 348 (487)
+.. +...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++...... +.+...+.
T Consensus 233 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 309 (388)
T d1w3ba_ 233 SPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLN 309 (388)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-Cccchhhh
Confidence 332 45556666777777777777777777776653 3345666677777777777777777777766554 55666667
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhc
Q 011362 349 SLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVP-NVITFDMLIRGFIRI 427 (487)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 427 (487)
.+...+...|++++|...|++..+.. +.+..++..++.+|...|++++|...|+++++. .| +...|..+..+|.+.
T Consensus 310 ~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~ 386 (388)
T d1w3ba_ 310 NLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc
Confidence 77777777777777777777766542 334556666777777777777777777777664 23 355666666666666
Q ss_pred CC
Q 011362 428 NE 429 (487)
Q Consensus 428 g~ 429 (487)
||
T Consensus 387 ~D 388 (388)
T d1w3ba_ 387 QD 388 (388)
T ss_dssp CC
T ss_pred CC
Confidence 54
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=6.1e-25 Score=197.87 Aligned_cols=377 Identities=14% Similarity=0.020 Sum_probs=318.8
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|++.|+.+++.. |.++.++..+..+|.+.|++++|+..|+++++.. +.+..++..++.++...|++++|+..
T Consensus 12 ~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~~A~~~ 89 (388)
T d1w3ba_ 12 AGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEH 89 (388)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccccccccc
Confidence 389999999999999986 4578899999999999999999999999999875 55678899999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEM 160 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 160 (487)
+....+.. +.+..............+....+........... .................+....+...+...
T Consensus 90 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 90 YRHALRLK-------PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHC-------TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccc-------cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence 99999876 5556666666666777777777777766665543 335555666677777888899999988888
Q ss_pred HHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHh
Q 011362 161 MDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVF 240 (487)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 240 (487)
....+ .+...+..+...+...|++++|...++...+... .+...+..+...+...|++++|...+......+ +.+..
T Consensus 162 ~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 238 (388)
T d1w3ba_ 162 IETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAV 238 (388)
T ss_dssp HHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHH
T ss_pred hccCc-chhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHH
Confidence 77643 2566778888899999999999999999887643 367788999999999999999999999998875 56777
Q ss_pred hHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 011362 241 SYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLC 320 (487)
Q Consensus 241 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 320 (487)
.+..+...+.+.|++++|+..|++..+..+. +..++..+...+...|++++|...+....... +.+...+..+...+.
T Consensus 239 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 316 (388)
T d1w3ba_ 239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR 316 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHH
Confidence 8888999999999999999999999886443 56788889999999999999999999988763 567788889999999
Q ss_pred hCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCC
Q 011362 321 KNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ 394 (487)
Q Consensus 321 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 394 (487)
..|++++|...+++..+.. |.+..++..+..+|...|++++|...|+++++.. +-+...|..++.+|.+.||
T Consensus 317 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 9999999999999998765 5678889999999999999999999999998763 3457789999999988775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.9e-15 Score=130.28 Aligned_cols=229 Identities=12% Similarity=0.053 Sum_probs=156.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
-..+..+.+.|++++|+..|+++++.. |.+..+|..++.++...|++++|+..|+++.+.. |.+...+..++
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~la 94 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-------PDNQTALMALA 94 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------ccccccccccc
Confidence 345777889999999999999998875 5567789999999999999999999999988865 56778889999
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhh----------------HHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCh
Q 011362 107 DGLCKEGFVDKAKELLLQMKDKNIKPNVVT----------------YTSVIRGFCYAKDWNEAKRLFIEMMDQGV-QPNV 169 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 169 (487)
.++...|++++|.+.++.+.... |+... ....+..+...+.+.+|...+.+.....+ .++.
T Consensus 95 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~ 172 (323)
T d1fcha_ 95 VSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP 172 (323)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCH
T ss_pred ccccccccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccc
Confidence 99999999999999999887652 22111 01111222334455666666666554322 1234
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 011362 170 VTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGY 249 (487)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (487)
..+..+...+...|++++|+..++....... -+...+..+...+...|++++|.+.++++.+.. +.+..++..+..+|
T Consensus 173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 250 (323)
T d1fcha_ 173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISC 250 (323)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHH
Confidence 4555566666666777777777666655422 245566666666666677777776666666553 34555666666666
Q ss_pred HccCCHhHHHHHHHHHHH
Q 011362 250 CKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 250 ~~~~~~~~a~~~~~~~~~ 267 (487)
.+.|++++|+..|++.++
T Consensus 251 ~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 251 INLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666666666666666654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=8.3e-15 Score=127.31 Aligned_cols=243 Identities=14% Similarity=0.003 Sum_probs=147.3
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC
Q 011362 139 SVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG 218 (487)
Q Consensus 139 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (487)
.....+.+.|++++|+..|+++++..+. +...|..+..++...|++++|...+.+..+... -+...+..++..+...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-ccccccccccccccccc
Confidence 3455556666666666666666655322 455566666666666666666666666655422 24555566666666666
Q ss_pred CHhHHHHHHHHHHHcCCCCCHhh-HHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHH
Q 011362 219 RVNHAKELFVSMESMGCKHTVFS-YSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLF 297 (487)
Q Consensus 219 ~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 297 (487)
++++|.+.++.+.... |+... ......... ..+.......+..+...+.+.++...+
T Consensus 102 ~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~ 159 (323)
T d1fcha_ 102 LQRQACEILRDWLRYT--PAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELF 159 (323)
T ss_dssp CHHHHHHHHHHHHHTS--TTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhc--cchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHH
Confidence 6666666666655442 11110 000000000 000001111122333445566777777
Q ss_pred HHHHHcCC-CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCC
Q 011362 298 DEMQRNGV-AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLV 376 (487)
Q Consensus 298 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 376 (487)
.++.+... ..+...+..+...+...|++++|...+++..... +.+...|..+...|...|++++|.+.|+++.+.. +
T Consensus 160 ~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p 237 (323)
T d1fcha_ 160 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-P 237 (323)
T ss_dssp HHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-h
Confidence 76665422 2345667777778888888888888888887665 4567778888888888888888888888877642 3
Q ss_pred CcHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Q 011362 377 PNVVTYSIMIGGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 407 (487)
-+..+|..++.+|.+.|++++|+..|++.++
T Consensus 238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 238 GYIRSRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3566788888888888888888888888765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=6.5e-11 Score=101.11 Aligned_cols=215 Identities=10% Similarity=0.032 Sum_probs=166.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccC-ChHHHHHHHHHHHhCCCCCccccccchHH
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTS-HTIVALNLFEEMANGNGEFGVVCEPNTVT 101 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 101 (487)
..+++.+...+.+.+.+++|+..++++++.. |-+..+|+....++...| ++++|+..++++.+.. |.+..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-------p~~~~a 114 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-------PKNYQV 114 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-------TTCHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-------HhhhhH
Confidence 5567777788889999999999999999985 566778888888888876 5899999999998876 678899
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHh
Q 011362 102 YTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCK 181 (487)
Q Consensus 102 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 181 (487)
|..+..++.+.|++++|++.++++.+.. +.+..+|..+..++...|++++|+..++++++..+. +...|+.+...+.+
T Consensus 115 ~~~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 115 WHHRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHH
Confidence 9999999999999999999999998874 347889999999999999999999999999987544 66677777766666
Q ss_pred CCC------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCC-CCHhhHHHHHHHH
Q 011362 182 NGK------MDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCK-HTVFSYSILINGY 249 (487)
Q Consensus 182 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~ 249 (487)
.+. +++|+..+..+++... .+...|..+...+... ..+++...++...+.... .+...+..++..|
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred ccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 555 5678888888777643 3667777666655443 457777777777654322 2334444555544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=2.4e-10 Score=97.54 Aligned_cols=199 Identities=12% Similarity=0.074 Sum_probs=161.0
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCCHhh
Q 011362 58 VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG-FVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 58 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
..++..+..++.+.+.+++|+++++++.+.+ |.+..+|+....++...| ++++|+..++...+.. +-+..+
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-------P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a 114 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-------AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQV 114 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-------CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhH
Confidence 3466777788889999999999999999987 678889999999988876 5899999999998874 347889
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 011362 137 YTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL 216 (487)
Q Consensus 137 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 216 (487)
|..+..++.+.|++++|+..+.++.+..+. +...|..+...+...|++++|+..++.+++.++. +...|+.+...+.+
T Consensus 115 ~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~ 192 (315)
T d2h6fa1 115 WHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISN 192 (315)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHH
Confidence 999999999999999999999999987544 7888999999999999999999999999987443 67778777766665
Q ss_pred CCC------HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 217 TGR------VNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 217 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.+. +++|...+..+.+.. |.+...|..+...+.. ...+++.+.+....+.
T Consensus 193 ~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 193 TTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp TTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred ccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 554 567888888887775 5577777777666544 4457777877777664
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=2e-10 Score=100.69 Aligned_cols=278 Identities=10% Similarity=-0.035 Sum_probs=188.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccch
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD----VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNT 99 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 99 (487)
.........+...|++++|++++++.+......+ ..++..+..++...|++++|+..|++..+..+..+. .+...
T Consensus 13 e~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~-~~~~~ 91 (366)
T d1hz4a_ 13 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-WHYAL 91 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc-hHHHH
Confidence 3444456778899999999999999987642222 235677888999999999999999988764311000 12224
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC---CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC----CC
Q 011362 100 VTYTTIIDGLCKEGFVDKAKELLLQMKDK----NIKP---NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ----PN 168 (487)
Q Consensus 100 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~ 168 (487)
..+..+...+...|++..+...+...... +... ....+..+...+...|+++.+...+......... ..
T Consensus 92 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 171 (366)
T d1hz4a_ 92 WSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQ 171 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhH
Confidence 56677788888999999999988876532 1111 1234556778888999999999999888764322 22
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCC---CH
Q 011362 169 VVTFNVIMDELCKNGKMDEASRLLDLMIQH----GVRP--DAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKH---TV 239 (487)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 239 (487)
...+......+...+++..+...+...... +..+ ....+..+...+...|+++.|...+.......... ..
T Consensus 172 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 251 (366)
T d1hz4a_ 172 LQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQ 251 (366)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHH
Confidence 334455566777888888888887765542 1111 12345556677788888999888888765543221 23
Q ss_pred hhHHHHHHHHHccCCHhHHHHHHHHHHH----CCCccC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011362 240 FSYSILINGYCKNKEIEGALSLYSEMLS----KGIKPD-VVIHNTLFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
..+..+..++...|++++|...+++... .+..|+ ...+..+...+...|++++|...+++..+
T Consensus 252 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 252 GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3455677788888888888888887753 223232 34566677778888888888888877654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.38 E-value=1.8e-10 Score=98.40 Aligned_cols=185 Identities=10% Similarity=0.037 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHH
Q 011362 75 IVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAK 154 (487)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 154 (487)
++|..+|++..+.. .|.+...|..++..+.+.|+++.|..+|+++.+........+|...+..+.+.|+.+.|.
T Consensus 81 ~~a~~i~~ral~~~------~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar 154 (308)
T d2onda1 81 DEAANIYERAISTL------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHTTT------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHH
Confidence 44445555544432 133344444444555555555555555555544322112234445555555555555555
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHH-HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHc
Q 011362 155 RLFIEMMDQGVQPNVVTFNVIMDE-LCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESM 233 (487)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 233 (487)
++|+++.+.+.. +...|...+.. +...|+.+.|..+|+.+.+. .+.+...+...+......|+++.|..+|++....
T Consensus 155 ~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~ 232 (308)
T d2onda1 155 MIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 555555443221 22222222221 22334555555555555543 2224445555555555555555555555555443
Q ss_pred C-CCC--CHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 234 G-CKH--TVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 234 ~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
. .+| ....|...+..-...|+.+.+.++++++.+
T Consensus 233 ~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 111 122444445444455555555555555544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.34 E-value=1.7e-11 Score=102.21 Aligned_cols=151 Identities=11% Similarity=-0.089 Sum_probs=103.6
Q ss_pred ccchHHHHHHHHHhCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHH
Q 011362 3 RVSHGFVVLGRILKSCFTP---DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALN 79 (487)
Q Consensus 3 ~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 79 (487)
+.+.|+.-+++++...... ...+|..+..+|.+.|++++|+..|++.++.. +.++.+|..++.++...|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 4556777777777653211 23466777788888888888888888888775 5567778888888888888888888
Q ss_pred HHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHH
Q 011362 80 LFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIE 159 (487)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 159 (487)
.|+++.+.. |.+..++..++.++...|++++|.+.|+...+.. +.+......+...+.+.+..+.+..+...
T Consensus 93 ~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 93 AFDSVLELD-------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp HHHHHHHHC-------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhHHHHHH-------hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 888888765 5566778888888888888888888888877653 22444444444444555555545444444
Q ss_pred HHH
Q 011362 160 MMD 162 (487)
Q Consensus 160 ~~~ 162 (487)
...
T Consensus 165 ~~~ 167 (259)
T d1xnfa_ 165 FEK 167 (259)
T ss_dssp HHH
T ss_pred hhc
Confidence 443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=1.3e-09 Score=95.27 Aligned_cols=164 Identities=10% Similarity=-0.007 Sum_probs=91.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC----CCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcC--CCC----ChHhHH
Q 011362 279 TLFVGLFEIHQVERAFKLFDEMQRNGV----AADTWTYRTFIDGLCKNGYIVEAVELFHTLRILK--CEF----DIRAYN 348 (487)
Q Consensus 279 ~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~----~~~~~~ 348 (487)
.+...+...|+++.+...+........ ......+......+...+....+...+....... ... ....+.
T Consensus 138 ~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~ 217 (366)
T d1hz4a_ 138 IRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANK 217 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHH
Confidence 344455555666666665555543211 1112233344445555666666666555443211 011 122344
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCCCC---cHHHHHHHHHHHHccCCHHHHHHHHHHHHh----CCCCCC-HHHHHHH
Q 011362 349 SLIDGLCKSGRLEIALELFRSLPCGVLVP---NVVTYSIMIGGLCNDGQMDKARDLFLDMEE----NAVVPN-VITFDML 420 (487)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l 420 (487)
.+...+...|++++|...++......... ....+..+..++...|++++|...++++.. .+..|+ ...+..+
T Consensus 218 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 297 (366)
T d1hz4a_ 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 297 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHH
Confidence 55556667777777777777766542211 123455566777777888888877777652 233332 3456667
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 011362 421 IRGFIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 421 ~~~~~~~g~~~~a~~~~~~~~~ 442 (487)
..+|...|++++|.+.+++.++
T Consensus 298 a~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 298 NQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777788888888887777654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.32 E-value=1.4e-11 Score=106.96 Aligned_cols=260 Identities=9% Similarity=-0.043 Sum_probs=138.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH----------HccCChHHHHHHHHHHHhCCCCCcccc
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGL----------CRTSHTIVALNLFEEMANGNGEFGVVC 95 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~a~~~~~~~~~~~~~~~~~~ 95 (487)
+..++......+..++|+++++++++.. |.+...|+.....+ ...|++++|+.+++.+.+.+
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~-P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~------- 103 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN------- 103 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-------
Confidence 3434443334444589999999998874 33444554333222 22344677777777777765
Q ss_pred ccchHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCCHhhHH-HHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhH
Q 011362 96 EPNTVTYTTIIDGLCKEGF--VDKAKELLLQMKDKNIKPNVVTYT-SVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTF 172 (487)
Q Consensus 96 ~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 172 (487)
|.+...|..+..++...++ +++|...++++.+.. +++...+. .....+...+.+++|+..++.+++..+. +...|
T Consensus 104 pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~ 181 (334)
T d1dcea1 104 PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSW 181 (334)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHH
T ss_pred CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHH
Confidence 5566667666666666543 677777777776653 23444443 3445556667777777777777665433 56666
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHcc
Q 011362 173 NVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKN 252 (487)
Q Consensus 173 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 252 (487)
+.+..++...|++++|...+....+. .|+ .......+...+..+++...+....... +++...+..++..+...
T Consensus 182 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~ 255 (334)
T d1dcea1 182 HYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVL 255 (334)
T ss_dssp HHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHH
Confidence 66666777777666554443322221 000 0111222233344444555444444432 33333344444444445
Q ss_pred CCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011362 253 KEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQVERAFKLFDEMQR 302 (487)
Q Consensus 253 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 302 (487)
+++++|...+.+.....+. +..++..+...+...|+.++|...++++.+
T Consensus 256 ~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ 304 (334)
T d1dcea1 256 QSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKA 304 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5555555555554443221 333444444455555555555555555544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=6.7e-10 Score=94.72 Aligned_cols=219 Identities=10% Similarity=0.023 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc--------------CChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 011362 75 IVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE--------------GFVDKAKELLLQMKDKNIKPNVVTYTSV 140 (487)
Q Consensus 75 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l 140 (487)
+.+..+|+++.... +.++..|...+..+... +..++|..+|++..+...+.+...|...
T Consensus 33 ~Rv~~vyerAl~~~-------~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~y 105 (308)
T d2onda1 33 KRVMFAYEQCLLVL-------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 105 (308)
T ss_dssp HHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 34556677766643 55666776666544332 2346677777777665344455566667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcCCC
Q 011362 141 IRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDG-FCLTGR 219 (487)
Q Consensus 141 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~ 219 (487)
+....+.|+++.|..+|+++++.........|...+....+.|+++.|.++|+.+.+.+.. +...|...+.. +...|+
T Consensus 106 a~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~e~~~~~~ 184 (308)
T d2onda1 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKD 184 (308)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCC
T ss_pred HHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhccC
Confidence 7777777777777777777766533323345666777777777777777777777665432 33333333322 334566
Q ss_pred HhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCC-ccC--hhhHHHHHHHHHhcCCHHHHHHH
Q 011362 220 VNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGI-KPD--VVIHNTLFVGLFEIHQVERAFKL 296 (487)
Q Consensus 220 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~ 296 (487)
.+.|..+|+.+.... +.+...+...+....+.|+++.|..+|++...... .|. ...|...+..-...|+.+.+..+
T Consensus 185 ~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~ 263 (308)
T d2onda1 185 KSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263 (308)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777766652 44566667777777777777777777777665432 221 23455555555566677766666
Q ss_pred HHHHHH
Q 011362 297 FDEMQR 302 (487)
Q Consensus 297 ~~~~~~ 302 (487)
++++.+
T Consensus 264 ~~r~~~ 269 (308)
T d2onda1 264 EKRRFT 269 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.29 E-value=5e-11 Score=103.38 Aligned_cols=274 Identities=10% Similarity=0.006 Sum_probs=176.6
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHH----------HhcCChhHHHHHHHHHHhCCCCCC
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGL----------CKEGFVDKAKELLLQMKDKNIKPN 133 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~a~~~~~~~~~~~~~~~ 133 (487)
++......+..++|+++++++.+.+ |.+...|+.....+ ...|++++|+..++...+.. +-+
T Consensus 35 ~~~~~~~~~~~~~al~~~~~~l~~~-------P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~ 106 (334)
T d1dcea1 35 VFQKRQAGELDESVLELTSQILGAN-------PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKS 106 (334)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHhcccccHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCc
Confidence 3333344445689999999999876 44555664433332 23345778888888887764 336
Q ss_pred HhhHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCChhhHH-HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 011362 134 VVTYTSVIRGFCYAK--DWNEAKRLFIEMMDQGVQPNVVTFN-VIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTL 210 (487)
Q Consensus 134 ~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 210 (487)
...|..+..++...+ ++++|...+.++.+.... +...+. .....+...+.+++|+..++.+.+.... +...|..+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l 184 (334)
T d1dcea1 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYR 184 (334)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHH
T ss_pred HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHH
Confidence 777777777776655 478899999988876433 444443 4446777788899999998888777443 67788888
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHHHHHhcCCH
Q 011362 211 LDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFVGLFEIHQV 290 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 290 (487)
..++...|++++|...+....... |. .......+...+..+.+...+........ ++...+..+...+...++.
T Consensus 185 ~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~ 258 (334)
T d1dcea1 185 SCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSE 258 (334)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhH
Confidence 888888888887765554433321 11 11223334555666777777777666533 2334444555666667777
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHH
Q 011362 291 ERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLC 355 (487)
Q Consensus 291 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 355 (487)
++|...+.+..+.. +.+...+..++.++...|++++|...++.+.+.. |.+...|..|...+.
T Consensus 259 ~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 259 LESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHHHHHHHHh
Confidence 77777777766542 2344566677777777888888888888877664 334445555544443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=8.6e-11 Score=97.85 Aligned_cols=218 Identities=10% Similarity=-0.036 Sum_probs=136.1
Q ss_pred CHHHHHHHHHHHHhcCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCC
Q 011362 38 RIMEAAALFTKLRVFGCEP---DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGF 114 (487)
Q Consensus 38 ~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 114 (487)
+.+.|+.-++++....... ...++..++.+|.+.|++++|++.|++..+.. |.++.+|..++.++.+.|+
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-------p~~~~a~~~lg~~~~~~g~ 86 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-------PDMPEVFNYLGIYLTQAGN 86 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-------CCCHHHHhhhchHHHHHHH
Confidence 4455666666766542111 23367778888999999999999999998876 6678889999999999999
Q ss_pred hhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 011362 115 VDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDL 194 (487)
Q Consensus 115 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 194 (487)
+++|++.|+++.+.. +-+..++..+..++...|++++|...|+...+..+. +......+...+.+.+..+....+...
T Consensus 87 ~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 87 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999999988864 335677888888899999999999999998876432 333333344444555555555555555
Q ss_pred HHHCCCCCCHHHHHHHHHHHHcCCCH----hHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC
Q 011362 195 MIQHGVRPDAFTYNTLLDGFCLTGRV----NHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLSK 268 (487)
Q Consensus 195 ~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 268 (487)
.......+ ..+. ++..+...... +.+...+....... +....++..+...|...|++++|...|++.+..
T Consensus 165 ~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 165 FEKSDKEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLA-EHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHSCCCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhccchhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcC-cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 54432221 1122 12222221111 11111111111110 112234556677777777777777777777664
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.1e-08 Score=79.74 Aligned_cols=130 Identities=10% Similarity=-0.014 Sum_probs=101.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.|+. ...+...|+++.|++.|+++. +|++.+|..++.++...|++++|++.|++..+.+ |.....|..
T Consensus 8 l~~~-g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-------p~~~~a~~~ 75 (192)
T d1hh8a_ 8 LWNE-GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQ 75 (192)
T ss_dssp HHHH-HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHH
T ss_pred HHHH-HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-------hhhhhhHHH
Confidence 3554 666788999999999998753 6778888899999999999999999999999876 677889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCC--------------C-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIK--------------P-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQ 166 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 166 (487)
+..++.+.|++++|++.|++....... + ...++..+..++.+.|++++|.+.+....+....
T Consensus 76 ~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 76 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 999999999999999999887653110 0 1244556777777888888888888777765443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=9.8e-09 Score=72.74 Aligned_cols=99 Identities=11% Similarity=-0.005 Sum_probs=87.3
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.+++.. |.+...|..+..+|...|++++|+..++++++.+ +.+...|..++.++...|++++|+..
T Consensus 16 ~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~~~ 93 (117)
T d1elwa_ 16 VGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRT 93 (117)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHHHH
Confidence 489999999999999997 5589999999999999999999999999999986 67888999999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
|++..+.. |.+...+..+..+
T Consensus 94 ~~~a~~~~-------p~~~~~~~~l~~l 114 (117)
T d1elwa_ 94 YEEGLKHE-------ANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHTTC-------TTCHHHHHHHHHH
T ss_pred HHHHHHhC-------CCCHHHHHHHHHH
Confidence 99999876 5556665555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.91 E-value=6.2e-08 Score=81.40 Aligned_cols=174 Identities=10% Similarity=-0.051 Sum_probs=119.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcC----CCC-CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccc
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFG----CEP-DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPN 98 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (487)
..|......|...|++++|.+.|.++.... -++ -..+|..++.+|.+.|++++|++.+++........+. ....
T Consensus 38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~ 116 (290)
T d1qqea_ 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ-FRRG 116 (290)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhccc-chhH
Confidence 357778889999999999999999987641 112 2346888999999999999999999987653211000 1222
Q ss_pred hHHHHHHHHHHHh-cCChhHHHHHHHHHHhC----CCCC-CHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChh--
Q 011362 99 TVTYTTIIDGLCK-EGFVDKAKELLLQMKDK----NIKP-NVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVV-- 170 (487)
Q Consensus 99 ~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-- 170 (487)
...+..++..|.. .|++++|++.+++..+. +.++ ...++..++..+...|++++|+..|+++..........
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~ 196 (290)
T d1qqea_ 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQW 196 (290)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGG
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhh
Confidence 4566677777744 59999999999877542 2111 13457778888888899999999988887653222111
Q ss_pred ----hHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 011362 171 ----TFNVIMDELCKNGKMDEASRLLDLMIQH 198 (487)
Q Consensus 171 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 198 (487)
.+...+..+...|+++.|...++...+.
T Consensus 197 ~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 197 SLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 1233444566778888888888877654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=4.3e-08 Score=76.35 Aligned_cols=142 Identities=11% Similarity=-0.086 Sum_probs=93.5
Q ss_pred HHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCH
Q 011362 316 IDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQM 395 (487)
Q Consensus 316 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 395 (487)
...+...|++++|++.|..+. ++++.+|..+..+|...|++++|.+.|++.++.+ +.+...|..+..++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 334566677777777766532 4566666777777777777777777777776643 34456677777777777777
Q ss_pred HHHHHHHHHHHhCCC--------------CCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 011362 396 DKARDLFLDMEENAV--------------VPN-VITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 396 ~~A~~~~~~~~~~~~--------------~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (487)
++|...|++.+.... .++ ..++..+..++...|++++|.+.++++......++.......+..+.
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~ 166 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVW 166 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH
Confidence 777777777654210 011 24455677788889999999999988887665665555555555554
Q ss_pred hc
Q 011362 461 KN 462 (487)
Q Consensus 461 ~~ 462 (487)
+.
T Consensus 167 ~~ 168 (192)
T d1hh8a_ 167 KQ 168 (192)
T ss_dssp TT
T ss_pred hh
Confidence 43
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.89 E-value=5.9e-08 Score=68.58 Aligned_cols=94 Identities=9% Similarity=-0.052 Sum_probs=69.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
..-+..+...|++++|+..|+++++.. +.+...|..+..++...|++++|+..++...+.+ |.+...|..++
T Consensus 7 ~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~~g 78 (117)
T d1elwa_ 7 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-------PDWGKGYSRKA 78 (117)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------TTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-------cchhhHHHHHH
Confidence 334666777777777777777777764 5566677777777777777777777777777765 56677777777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 011362 107 DGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
.++...|++++|+..|++..+.
T Consensus 79 ~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 79 AALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 7777777777777777777765
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.88 E-value=5.4e-06 Score=68.23 Aligned_cols=226 Identities=12% Similarity=-0.001 Sum_probs=151.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHHHhCCCCCcccccc
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCR----TSHTIVALNLFEEMANGNGEFGVVCEP 97 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (487)
|+..+..|...+.+.+++++|+++|++..+.| +..++..|...|.. ..++..|..+++.....+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--------- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---------
Confidence 45677778888889999999999999998765 56667677777765 668888999998888755
Q ss_pred chHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCh
Q 011362 98 NTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQGVQPNV 169 (487)
Q Consensus 98 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 169 (487)
++.....+...+.. .++.+.|...++.....|. ......+...+.. ......+...+...... .+.
T Consensus 69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~ 142 (265)
T d1ouva_ 69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDG 142 (265)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCH
T ss_pred ccchhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---ccc
Confidence 34444555554443 4567888888888877653 2333334333332 34566677777766554 255
Q ss_pred hhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----CCCHhHHHHHHHHHHHcCCCCCHhh
Q 011362 170 VTFNVIMDELCK----NGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCL----TGRVNHAKELFVSMESMGCKHTVFS 241 (487)
Q Consensus 170 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 241 (487)
..+..+...+.. ..+...+..+++...+.| +......+...+.. ..++++|...|....+.| ++..
T Consensus 143 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a 216 (265)
T d1ouva_ 143 DGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGG 216 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred chhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHH
Confidence 566667666664 445667777777776654 45555555555554 557888888888887765 3455
Q ss_pred HHHHHHHHHc----cCCHhHHHHHHHHHHHCCCc
Q 011362 242 YSILINGYCK----NKEIEGALSLYSEMLSKGIK 271 (487)
Q Consensus 242 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 271 (487)
+..|..+|.. ..+.++|.+.|++....|..
T Consensus 217 ~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 217 CFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 6666666654 34677788888777766543
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.83 E-value=8.1e-08 Score=72.38 Aligned_cols=106 Identities=8% Similarity=-0.044 Sum_probs=81.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
+......|.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|+..|+++.+.+ |.+..+|..+
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-------p~~~~a~~~~ 84 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-------KKYIKGYYRR 84 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-------ccchHHHHHH
Confidence 4455667888888888888888888875 5567778888888888888888888888888765 5667888888
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHH
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSV 140 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 140 (487)
+.++...|++++|...+++..... +-+...+..+
T Consensus 85 g~~~~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l 118 (159)
T d1a17a_ 85 AASNMALGKFRAALRDYETVVKVK-PHDKDAKMKY 118 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 888888888888888888887763 2234444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.79 E-value=6.3e-08 Score=76.48 Aligned_cols=100 Identities=14% Similarity=-0.021 Sum_probs=88.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
|++..+...+..+.+.|++++|+..|++++... |.++..|..++.+|.+.|++++|+..|+++.+.. |.+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-------p~~~~ 73 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-------GQSVK 73 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-------TTCHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-------CCcHH
Confidence 677888888999999999999999999998876 6678889999999999999999999999999876 56788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+|..++.+|...|++++|+..|+++.+.
T Consensus 74 a~~~lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 74 AHFFLGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999887653
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.78 E-value=6.7e-08 Score=72.85 Aligned_cols=99 Identities=7% Similarity=-0.041 Sum_probs=85.8
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.+++.+ |.+...|..+..+|...|++++|+..|+++++.. +.+..+|..++.++...|++++|+..
T Consensus 23 ~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~eA~~~ 100 (159)
T d1a17a_ 23 AKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAALRD 100 (159)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 489999999999999997 5589999999999999999999999999999886 66778999999999999999999999
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHH
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDG 108 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 108 (487)
++++.... |.+...+..+..+
T Consensus 101 ~~~a~~~~-------p~~~~~~~~l~~~ 121 (159)
T d1a17a_ 101 YETVVKVK-------PHDKDAKMKYQEC 121 (159)
T ss_dssp HHHHHHHS-------TTCHHHHHHHHHH
T ss_pred HHHHHHcC-------CCCHHHHHHHHHH
Confidence 99999865 4455555554433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=8.8e-07 Score=74.14 Aligned_cols=163 Identities=12% Similarity=0.058 Sum_probs=90.8
Q ss_pred HHHHHcCCCHhHHHHHHHHHHHc----CCC-CCHhhHHHHHHHHHccCCHhHHHHHHHHHHHC----C-CccChhhHHHH
Q 011362 211 LDGFCLTGRVNHAKELFVSMESM----GCK-HTVFSYSILINGYCKNKEIEGALSLYSEMLSK----G-IKPDVVIHNTL 280 (487)
Q Consensus 211 ~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l 280 (487)
...|...+++++|.+.|.++.+. +.+ ....+|..+..+|.+.|++++|...+++.... + ......++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45566777777777777766542 111 12345677777777788888887777765542 1 11112334444
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHc----CCCC-cHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCCh------HhHH
Q 011362 281 FVGLFE-IHQVERAFKLFDEMQRN----GVAA-DTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDI------RAYN 348 (487)
Q Consensus 281 ~~~~~~-~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 348 (487)
...+.. .|++++|...+.+..+. +.++ ...++..+...+...|++++|...|+++......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444533 47777777777665431 1111 1234555666677777777777777776654321111 1123
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCC
Q 011362 349 SLIDGLCKSGRLEIALELFRSLPCG 373 (487)
Q Consensus 349 ~l~~~~~~~g~~~~a~~~~~~~~~~ 373 (487)
..+..+...|+++.|...+++..+.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3344455566777777777666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.72 E-value=8.1e-08 Score=67.19 Aligned_cols=93 Identities=10% Similarity=-0.061 Sum_probs=82.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
+..+...+.+.|++++|+..|+++++.. +.+..+|..++.++.+.|++++|+..|+++.+.. |.+..++..+
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------p~~~~a~~~l 90 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-------PKDIAVHAAL 90 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-------cccccchHHH
Confidence 3446778899999999999999999885 5578889999999999999999999999999876 6778999999
Q ss_pred HHHHHhcCChhHHHHHHHHHH
Q 011362 106 IDGLCKEGFVDKAKELLLQMK 126 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~ 126 (487)
..+|...|++++|++.+++.+
T Consensus 91 a~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 91 AVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.71 E-value=3.1e-05 Score=63.52 Aligned_cols=96 Identities=14% Similarity=0.026 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCC
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EGFVDKAKELLLQMKDKNIKP 132 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~ 132 (487)
|+..+..|...+...+++++|+++|++..+.+ +...+..|...|.. ..+...|...+......+
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---------~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--- 68 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---------ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--- 68 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---
Confidence 34556666666677777777777777776644 34555556666654 456667777776666654
Q ss_pred CHhhHHHHHHHHHh----cCChhhHHHHHHHHHHcC
Q 011362 133 NVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 133 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 164 (487)
+......+...+.. ..+.+.|...++.....|
T Consensus 69 ~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g 104 (265)
T d1ouva_ 69 YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK 104 (265)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred ccchhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence 23333334333332 345566666666665554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.68 E-value=2.1e-07 Score=73.39 Aligned_cols=99 Identities=12% Similarity=-0.115 Sum_probs=68.3
Q ss_pred CcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHH
Q 011362 307 ADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMI 386 (487)
Q Consensus 307 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 386 (487)
|+...+...+..+.+.|++++|+..|.+++... |.++..|..+..+|.+.|++++|+..|+++++.. +-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 455556666677777777777777777776665 5566677777777777777777777777776642 33456677777
Q ss_pred HHHHccCCHHHHHHHHHHHHh
Q 011362 387 GGLCNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 387 ~~~~~~g~~~~A~~~~~~~~~ 407 (487)
.+|...|++++|+..|+++.+
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 777777777777777776654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.60 E-value=1.2e-07 Score=66.25 Aligned_cols=83 Identities=10% Similarity=0.070 Sum_probs=76.1
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..|+.++... |-++.+|..+..++.+.|++++|+..|+++++.. +.+..++..+...|...|++++|++.
T Consensus 29 ~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~~A~~~ 106 (112)
T d1hxia_ 29 LANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNANAALAS 106 (112)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHHHHHHH
Confidence 489999999999999996 4479999999999999999999999999999886 66788999999999999999999999
Q ss_pred HHHHH
Q 011362 81 FEEMA 85 (487)
Q Consensus 81 ~~~~~ 85 (487)
+++..
T Consensus 107 l~~~l 111 (112)
T d1hxia_ 107 LRAWL 111 (112)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99864
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=1.3e-07 Score=66.83 Aligned_cols=93 Identities=9% Similarity=-0.013 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCC---HHHHHHHHHhccCCCCCCc-HHHHHHHHHHH
Q 011362 314 TFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGR---LEIALELFRSLPCGVLVPN-VVTYSIMIGGL 389 (487)
Q Consensus 314 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~ 389 (487)
.++..+...+++++|.+.|++....+ |.++.++..+..++.+.++ +++|+.+++++...+..|+ ..+|..++.+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34445555555556666665555544 4455555555555554333 3345555555554321122 12444555555
Q ss_pred HccCCHHHHHHHHHHHHh
Q 011362 390 CNDGQMDKARDLFLDMEE 407 (487)
Q Consensus 390 ~~~g~~~~A~~~~~~~~~ 407 (487)
.+.|++++|++.|+++++
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 555555555555555555
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.55 E-value=3.5e-07 Score=64.61 Aligned_cols=105 Identities=13% Similarity=0.048 Sum_probs=76.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCC---HHHHHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 011362 348 NSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQ---MDKARDLFLDMEENAVVPNV-ITFDMLIRG 423 (487)
Q Consensus 348 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~ 423 (487)
..++..+...+++++|.+.|++....+ +.+..++..++.++.+.++ +++|+.+++++......|+. .+|..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777778888899999998888764 5677888888888876554 45688888888775433332 366778888
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCCHHHHHHH
Q 011362 424 FIRINEPSKVIELLHKMKEINVMPDASIVSIV 455 (487)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (487)
|.+.|++++|.+.|+++++. .|+..-...+
T Consensus 82 y~~~g~~~~A~~~~~~aL~~--~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT--EPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh--CcCCHHHHHH
Confidence 88899999999999998884 4654443333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=8.8e-07 Score=63.49 Aligned_cols=103 Identities=12% Similarity=-0.005 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..+...+...|++++|+..|+++++.+ +.+..++..+..+|.+.|++++|++.++++.+..+........-..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 45678889999999999999999999986 56788899999999999999999999999887542110000111246677
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhC
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
+...+...+++++|++.|++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 778888888999999999887654
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=5.4e-06 Score=62.69 Aligned_cols=98 Identities=7% Similarity=-0.070 Sum_probs=54.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHHHhCCC
Q 011362 24 VTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPD--------------VFTYTTLVNGLCRTSHTIVALNLFEEMANGNG 89 (487)
Q Consensus 24 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 89 (487)
..+...+..+.+.|++++|+..|++++....... ..+|..+..+|.+.|++++|+..++.+...+
T Consensus 14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~- 92 (170)
T d1p5qa1 14 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 92 (170)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-
Confidence 3455567788899999999999998876521110 1223334444445555555555555555443
Q ss_pred CCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 90 EFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 90 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|.++.++..++.++...|++++|+..|+...+.
T Consensus 93 ------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 93 ------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 334445555555555555555555555554443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.41 E-value=0.00034 Score=58.38 Aligned_cols=136 Identities=13% Similarity=0.069 Sum_probs=73.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchH
Q 011362 21 PDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTV 100 (487)
Q Consensus 21 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (487)
||..-...++..|.+.|.++.|..+|..+.. |..++..+.+.++++.|.+.+.+. .+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~------------~~~~ 70 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKA------------NSTR 70 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHH------------TCHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHc------------CCHH
Confidence 4444445566777777777777777776432 455666677777777777766543 2356
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 011362 101 TYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELC 180 (487)
Q Consensus 101 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 180 (487)
+|..+...+.+......+ .+.......+......++..|-..|.+++...+++..... -..+...++.++..|+
T Consensus 71 ~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lya 144 (336)
T d1b89a_ 71 TWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS 144 (336)
T ss_dssp HHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHH
Confidence 777777777766555433 1112222334555566777777777777777777766543 2345556667777776
Q ss_pred hCC
Q 011362 181 KNG 183 (487)
Q Consensus 181 ~~~ 183 (487)
+.+
T Consensus 145 k~~ 147 (336)
T d1b89a_ 145 KFK 147 (336)
T ss_dssp TTC
T ss_pred HhC
Confidence 643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=3e-06 Score=64.12 Aligned_cols=103 Identities=9% Similarity=-0.046 Sum_probs=83.5
Q ss_pred CccchHHHHHHHHHhCCCCCC--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 011362 2 GRVSHGFVVLGRILKSCFTPD--------------AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNG 67 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 67 (487)
|++++|+..|..++....... ..+|+.+..+|.+.|++++|+..+++++... |.++.++..++.+
T Consensus 27 ~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~ 105 (170)
T d1p5qa1 27 GKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEA 105 (170)
T ss_dssp TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHH
Confidence 789999999999987642211 2456778899999999999999999999986 5678899999999
Q ss_pred HHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 68 LCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 68 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
+...|++++|+..|+++.+.+ |.+......+..+..+.
T Consensus 106 ~~~~g~~~~A~~~~~~al~l~-------P~n~~~~~~l~~~~~~~ 143 (170)
T d1p5qa1 106 HLAVNDFELARADFQKVLQLY-------PNNKAAKTQLAVCQQRI 143 (170)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-------SSCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHH
Confidence 999999999999999999976 45666666655554433
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.6e-07 Score=85.17 Aligned_cols=226 Identities=8% Similarity=-0.084 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCH-hhHHHHHHHHHccCCHhHHHHHHHH
Q 011362 187 EASRLLDLMIQHGVRPD-AFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTV-FSYSILINGYCKNKEIEGALSLYSE 264 (487)
Q Consensus 187 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~ 264 (487)
+|.++|++..+. .|+ ...+..+..++...+++++| ++++...+ |+. ...+ +........+..+.+.++.
T Consensus 4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~--~e~~Lw~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKK--VEQDLWNHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHT--HHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHh--HHHHHHHHHHHHHHHHHHH
Confidence 566777766653 222 23444455556666666554 55554332 111 1111 1111111223445555665
Q ss_pred HHHCCCccChhhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhCCCHhHHHHHHHHHHHcCCCC
Q 011362 265 MLSKGIKPDVVIHNTLFVGL--FEIHQVERAFKLFDEMQRNGVAADTWTYRTFIDGLCKNGYIVEAVELFHTLRILKCEF 342 (487)
Q Consensus 265 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 342 (487)
..+....++..-.......+ ...+.++.++..+....+.. +++...+..+...+.+.|+.++|...+.......
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--- 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--- 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence 55443333332222221111 12334444444443333321 2334455566666667777777776666555322
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 011362 343 DIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIR 422 (487)
Q Consensus 343 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 422 (487)
...++..++..+...|++++|...|+++.+.. +.+...|+.++..+...|+..+|...|.+.+... +|-..++..|..
T Consensus 151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~ 228 (497)
T d1ya0a1 151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence 12456667777777777777777777776642 3445677777777777777777777777777653 345666666666
Q ss_pred HHHhc
Q 011362 423 GFIRI 427 (487)
Q Consensus 423 ~~~~~ 427 (487)
.+.+.
T Consensus 229 ~~~~~ 233 (497)
T d1ya0a1 229 ALSKA 233 (497)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65543
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.9e-07 Score=84.80 Aligned_cols=227 Identities=9% Similarity=-0.053 Sum_probs=129.6
Q ss_pred hHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHH
Q 011362 6 HGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVF-TYTTLVNGLCRTSHTIVALNLFEEM 84 (487)
Q Consensus 6 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 84 (487)
+|.+.|++++... +..+.++..+..++..+|++++| |++++.. .|+.. .++. -..+.+ ..+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~-e~~Lw~-~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV-EQDLWN-HAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH-HHHHHH-HHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH-HHHHHH-HHHHHHHHHHHHh
Confidence 6889999998864 22466777788889989988876 7777654 23221 1111 111111 1245677777776
Q ss_pred HhCCCCCccccccchHHH-HHH-HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 011362 85 ANGNGEFGVVCEPNTVTY-TTI-IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD 162 (487)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~-~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 162 (487)
.+... .++.... ..+ .......+.++.++..+....+.. +++...+..+...+.+.|+.++|...+.....
T Consensus 76 ~k~~~------~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 148 (497)
T d1ya0a1 76 AKNRA------NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCS 148 (497)
T ss_dssp HSCSS------CTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHH
T ss_pred ccccc------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhC
Confidence 65441 2222111 111 112223455666666555544332 33566777888888899999999888877655
Q ss_pred cCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhH
Q 011362 163 QGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 242 (487)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 242 (487)
.. ...++..+...+...|++++|...|++..+... .+...|+.+...+...|+..+|...|.+..... +|.+.++
T Consensus 149 ~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~ 223 (497)
T d1ya0a1 149 YI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAAS 223 (497)
T ss_dssp HH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHH
T ss_pred CC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHH
Confidence 32 124566788888999999999999999988733 366889999999999999999999999998776 6677888
Q ss_pred HHHHHHHHcc
Q 011362 243 SILINGYCKN 252 (487)
Q Consensus 243 ~~l~~~~~~~ 252 (487)
..|...+.+.
T Consensus 224 ~nL~~~~~~~ 233 (497)
T d1ya0a1 224 TNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888777643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.30 E-value=0.00062 Score=56.72 Aligned_cols=145 Identities=12% Similarity=0.110 Sum_probs=92.6
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCH
Q 011362 55 EPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNV 134 (487)
Q Consensus 55 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 134 (487)
.|+..-...++..|.+.|.++.|..+|..+. -|..++..+.+.++++.|.+.+.+.. +.
T Consensus 11 ~~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------------d~~rl~~~~v~l~~~~~avd~~~k~~------~~ 69 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------NFGRLASTLVHLGEYQAAVDGARKAN------ST 69 (336)
T ss_dssp CC----------------CTTTHHHHHHHTT---------------CHHHHHHHHHTTTCHHHHHHHHHHHT------CH
T ss_pred CCCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------------CHHHHHHHHHhhccHHHHHHHHHHcC------CH
Confidence 4555555677888889999999999998754 35567788888999999888876542 66
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 011362 135 VTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGF 214 (487)
Q Consensus 135 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 214 (487)
.+|..+...+.+.....-+ .+.......++.....++..|...|.+++...+++..... -..+...++.++..|
T Consensus 70 ~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~ly 143 (336)
T d1b89a_ 70 RTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILY 143 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHH
Confidence 7888888888887766543 2222333345556677888999999999999999987644 345777888899888
Q ss_pred HcCCCHhHHHHHH
Q 011362 215 CLTGRVNHAKELF 227 (487)
Q Consensus 215 ~~~~~~~~a~~~~ 227 (487)
++.+ .++-.+.+
T Consensus 144 ak~~-~~kl~e~l 155 (336)
T d1b89a_ 144 SKFK-PQKMREHL 155 (336)
T ss_dssp HTTC-HHHHHHHH
T ss_pred HHhC-hHHHHHHH
Confidence 8764 34433333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.30 E-value=4e-06 Score=62.14 Aligned_cols=99 Identities=11% Similarity=-0.062 Sum_probs=80.4
Q ss_pred CCccchHHHHHHHHHhCCCCCC---------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPD---------------AVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLV 65 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 65 (487)
.|++++|+..|..++..-.... ..+|..+..+|.+.|++++|++.++++++.+ +.+..+|..++
T Consensus 30 ~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g 108 (153)
T d2fbna1 30 KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLG 108 (153)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhH
Confidence 3889999999999886532211 2366778999999999999999999999886 66788999999
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHH
Q 011362 66 NGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIID 107 (487)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 107 (487)
.++...|++++|+..|++..+.+ |.+..+...+-.
T Consensus 109 ~~~~~lg~~~~A~~~~~~al~l~-------P~n~~~~~~l~~ 143 (153)
T d2fbna1 109 VANMYFGFLEEAKENLYKAASLN-------PNNLDIRNSYEL 143 (153)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHS-------TTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHH
Confidence 99999999999999999999965 445555554443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.29 E-value=1.2e-05 Score=59.48 Aligned_cols=112 Identities=13% Similarity=-0.009 Sum_probs=61.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHH
Q 011362 25 TFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTT 104 (487)
Q Consensus 25 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (487)
.+..-+..+.+.|++.+|+..|.+++..-..... .. +.... .... +....+|..
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~-------------~~-~~~~~--~~~~----------~~~~~~~~N 72 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-------------WD-DQILL--DKKK----------NIEISCNLN 72 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-------------CC-CHHHH--HHHH----------HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhh-------------hh-hHHHH--Hhhh----------hHHHHHHhh
Confidence 4555677888999999999999998764211000 00 00000 0000 112334555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 105 IIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 105 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
+..+|.+.|++++|++.++..+..+ |.++.+|..++.++...|++++|+..|++..+.
T Consensus 73 la~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 73 LATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555666666666666666555542 234555556666666666666666666665554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=3.6e-06 Score=60.15 Aligned_cols=92 Identities=13% Similarity=0.112 Sum_probs=40.9
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC-----HHHHHHHHHH
Q 011362 350 LIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEENAVV-PN-----VITFDMLIRG 423 (487)
Q Consensus 350 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-----~~~~~~l~~~ 423 (487)
+...+...|++++|+..|.+.++.+ +.+..++..+..+|.+.|++++|+..++++++.... +. ..+|..+...
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~ 88 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS 88 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence 3344444455555555554444432 233444444455555555555555555544431100 00 1233344444
Q ss_pred HHhcCChhHHHHHHHHHHh
Q 011362 424 FIRINEPSKVIELLHKMKE 442 (487)
Q Consensus 424 ~~~~g~~~~a~~~~~~~~~ 442 (487)
+...+++++|.+.+++...
T Consensus 89 ~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 89 YFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 4455555555555555544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.24 E-value=3.2e-06 Score=61.89 Aligned_cols=84 Identities=15% Similarity=-0.019 Sum_probs=66.5
Q ss_pred CccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc
Q 011362 2 GRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAE----------SRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT 71 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 71 (487)
+++++|++.|+.+++.. |.++.++..+..++... +.+++|+..|+++++.. |.+..+|..++.+|...
T Consensus 11 ~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~~~ 88 (145)
T d1zu2a1 11 LLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTSF 88 (145)
T ss_dssp HHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHHHc
Confidence 56899999999999997 56899999999888754 45678999999999886 66778888888888765
Q ss_pred CC-----------hHHHHHHHHHHHhC
Q 011362 72 SH-----------TIVALNLFEEMANG 87 (487)
Q Consensus 72 g~-----------~~~a~~~~~~~~~~ 87 (487)
|+ +++|.+.|++..+.
T Consensus 89 g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 89 AFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHhHHHhhhhhhccccc
Confidence 53 45666666666664
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=1.2e-05 Score=60.73 Aligned_cols=111 Identities=11% Similarity=-0.012 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHH
Q 011362 26 FTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTI 105 (487)
Q Consensus 26 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 105 (487)
+......+...|++++|+..|.++++.. +. ........ ..... -+.....+..+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~--~~----------~~~~~~~~-------~~~~~-------~~~~~~~~~nl 83 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV--EG----------SRAAAEDA-------DGAKL-------QPVALSCVLNI 83 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------HHHHSCHH-------HHGGG-------HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhh--hh----------hhhhhhhH-------HHHHh-------ChhhHHHHHHH
Confidence 4455677788999999999998876420 00 00000000 00010 12334455556
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 106 IDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 106 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
..++.+.|++++|+..++++++.. +.++.+|..+..++...|++++|+..|+++++.
T Consensus 84 a~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 84 GACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 666666666666666666666543 235556666666666666666666666666654
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.21 E-value=3.8e-05 Score=57.75 Aligned_cols=99 Identities=8% Similarity=-0.023 Sum_probs=55.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CCCC-----------HHHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 23 AVTFTSLIKGLCAESRIMEAAALFTKLRVFG---CEPD-----------VFTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 23 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
+..+...+..+.+.|++.+|+..|++++..- ...+ ..+|..+..+|.+.|++++|+..++.+.+.+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 3446667888899999999999998876531 0111 1122334444455555555555555555543
Q ss_pred CCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 89 GEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 89 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
|.+..+|..++.++...|++++|...|+++.+.
T Consensus 95 -------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 95 -------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred -------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444455555555555555555555555555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.21 E-value=4.5e-06 Score=63.19 Aligned_cols=102 Identities=6% Similarity=-0.104 Sum_probs=80.9
Q ss_pred CCccchHHHHHHHHHhCC---------------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSC---------------FTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLV 65 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 65 (487)
.|++++|+..|..+++.. .+.....|..+..++.+.|++++|+..++++++.. +.+..+|..++
T Consensus 40 ~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g 118 (169)
T d1ihga1 40 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRA 118 (169)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHH
Confidence 478889999888876421 02245567778899999999999999999999876 56788899999
Q ss_pred HHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHH
Q 011362 66 NGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLC 110 (487)
Q Consensus 66 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 110 (487)
.++...|++++|+..|+++.+.. |.+......+..+..
T Consensus 119 ~~~~~l~~~~~A~~~~~~al~l~-------p~n~~~~~~l~~~~~ 156 (169)
T d1ihga1 119 QGWQGLKEYDQALADLKKAQEIA-------PEDKAIQAELLKVKQ 156 (169)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHH
Confidence 99999999999999999999976 556666666555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.16 E-value=2.4e-05 Score=58.93 Aligned_cols=105 Identities=13% Similarity=0.015 Sum_probs=82.8
Q ss_pred CCccchHHHHHHHHHhCC---CCC-----------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSC---FTP-----------DAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVN 66 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~---~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 66 (487)
.|++++|+..|+.++..- ... ...+|..+..+|.+.|++++|+..+++++... +.+..+|..++.
T Consensus 28 ~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~ 106 (168)
T d1kt1a1 28 GGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGE 106 (168)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHH
Confidence 488999999999877531 111 12345667888999999999999999999986 678889999999
Q ss_pred HHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcC
Q 011362 67 GLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEG 113 (487)
Q Consensus 67 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 113 (487)
++...|++++|+..|+++.+.+ |.+..+...+..+....+
T Consensus 107 ~~~~l~~~~~A~~~~~~al~l~-------P~n~~~~~~l~~~~~~~~ 146 (168)
T d1kt1a1 107 AQLLMNEFESAKGDFEKVLEVN-------PQNKAARLQIFMCQKKAK 146 (168)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC-------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999976 566666666655544433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.15 E-value=4.6e-05 Score=57.67 Aligned_cols=125 Identities=10% Similarity=0.021 Sum_probs=77.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHH
Q 011362 27 TSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTII 106 (487)
Q Consensus 27 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 106 (487)
..........|++++|.+.|.+.+... +... +.......-+...-..+. +.....+..++
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~--------l~~~~~~~w~~~~r~~l~----------~~~~~a~~~la 74 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREW--RGPV--------LDDLRDFQFVEPFATALV----------EDKVLAHTAKA 74 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC--CSST--------TGGGTTSTTHHHHHHHHH----------HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--cccc--------cccCcchHHHHHHHHHHH----------HHHHHHHHHHH
Confidence 344567889999999999999988752 1110 000011111111111121 12345666777
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHH-----cCCCCChhhH
Q 011362 107 DGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMD-----QGVQPNVVTF 172 (487)
Q Consensus 107 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 172 (487)
.++...|++++|+..++.+.... +-+...|..++.++...|+..+|++.|+++.. .|+.|+..+-
T Consensus 75 ~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 75 EAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 77777777777777777777664 45777777777777777777777777777633 4777766543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.13 E-value=3.2e-06 Score=68.74 Aligned_cols=123 Identities=8% Similarity=-0.022 Sum_probs=65.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhc
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKE 112 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 112 (487)
..+.|++++|+..+++.++.. |.+...+..++..++..|++++|.+.|+...+.. |.+...+..+...+...
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-------P~~~~~~~~l~~ll~a~ 77 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-------PEYLPGASQLRHLVKAA 77 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------GGGHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHhc
Confidence 345667777777777766654 4555666667777777777777777777766654 33444444444444333
Q ss_pred CChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 113 GFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 113 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
+..+++..........+.+++...+...+..+...|+.++|.+.++++.+.
T Consensus 78 ~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 78 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 322222211111111111222233333445556667777777777766554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.13 E-value=9.4e-06 Score=59.30 Aligned_cols=88 Identities=15% Similarity=-0.028 Sum_probs=67.6
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHcc----------CChHHHHHHHHHHHhCCCCCccccccchHHH
Q 011362 33 LCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRT----------SHTIVALNLFEEMANGNGEFGVVCEPNTVTY 102 (487)
Q Consensus 33 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (487)
|-+.+.+++|+..|+...+.. |.++.++..+..++... +.+++|+..|+++.+.+ |.+..+|
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-------P~~~~a~ 78 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------PKKDEAV 78 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-------chhhHHH
Confidence 445677999999999999986 66778888888887643 45678999999999876 6788899
Q ss_pred HHHHHHHHhcCC-----------hhHHHHHHHHHHhC
Q 011362 103 TTIIDGLCKEGF-----------VDKAKELLLQMKDK 128 (487)
Q Consensus 103 ~~l~~~~~~~g~-----------~~~a~~~~~~~~~~ 128 (487)
..+..+|...|+ +++|.+.|++..+.
T Consensus 79 ~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 79 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc
Confidence 999998877653 35555555555553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.10 E-value=7.5e-05 Score=56.44 Aligned_cols=132 Identities=10% Similarity=0.046 Sum_probs=87.9
Q ss_pred HHHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHhcCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccC
Q 011362 314 TFIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCKSGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDG 393 (487)
Q Consensus 314 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 393 (487)
.........|++++|...|......... +... .+ ..+.+ +...-..+. ......+..++.++...|
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG-~~l~------~~-~~~~w--~~~~r~~l~----~~~~~a~~~la~~~~~~g 81 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALREWRG-PVLD------DL-RDFQF--VEPFATALV----EDKVLAHTAKAEAEIACG 81 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCS-STTG------GG-TTSTT--HHHHHHHHH----HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcc-cccc------cC-cchHH--HHHHHHHHH----HHHHHHHHHHHHHHHHCC
Confidence 3445667888888888888888764211 1000 00 00110 000001111 112346778888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH-----hcCCCCCHHHHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMK-----EINVMPDASIVSIVVDLLA 460 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~~~~~l~~~~~ 460 (487)
++++|+..++++++... -+...|..++.++...|+..+|++.|+++. +.|+.|...+....-..+.
T Consensus 82 ~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~~~il~ 152 (179)
T d2ff4a2 82 RASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNERILR 152 (179)
T ss_dssp CHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT
T ss_pred CchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 99999999999988643 378889999999999999999999999974 4799999877655554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.08 E-value=3.8e-06 Score=68.23 Aligned_cols=120 Identities=13% Similarity=0.018 Sum_probs=85.3
Q ss_pred CCccchHHHHHHHHHhCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHH
Q 011362 1 MGRVSHGFVVLGRILKSCFTPDAVTFTSLIKGLCAESRIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNL 80 (487)
Q Consensus 1 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 80 (487)
.|++++|+..++..++.. |.+...+..++..|+..|++++|+..|+.+.+.. +.+...+..+...+...+..+++...
T Consensus 9 ~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a~~~ 86 (264)
T d1zbpa1 9 EGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDFAQG 86 (264)
T ss_dssp TTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHHHHH
Confidence 489999999999999996 5589999999999999999999999999999874 33344555555555433333332221
Q ss_pred HHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 011362 81 FEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDK 128 (487)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 128 (487)
........ .++....+...+..+...|+.++|.+.++++.+.
T Consensus 87 ~~~~~~~~------~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 87 AATAKVLG------ENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp CCCEECCC------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhhhhccc------CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 11111111 1333445555667788899999999999998775
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.00023 Score=47.14 Aligned_cols=78 Identities=13% Similarity=-0.030 Sum_probs=61.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCC-HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCcccc
Q 011362 22 DAVTFTSLIKGLCAESRIMEAAALFTKLRVFG-----CEPD-VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVC 95 (487)
Q Consensus 22 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 95 (487)
++..+..++..+.+.|++++|+.+|+++++.. ..++ ..++..+..++.+.|++++|+..++++.+..
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~------- 76 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------- 76 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-------
Confidence 34445678999999999999999999987652 1122 4578899999999999999999999999976
Q ss_pred ccchHHHHHHH
Q 011362 96 EPNTVTYTTII 106 (487)
Q Consensus 96 ~~~~~~~~~l~ 106 (487)
|.+..+++.+.
T Consensus 77 P~~~~a~~Nl~ 87 (95)
T d1tjca_ 77 PEHQRANGNLK 87 (95)
T ss_dssp TTCHHHHHHHH
T ss_pred cCCHHHHHHHH
Confidence 55566666553
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.69 E-value=0.00015 Score=53.60 Aligned_cols=86 Identities=17% Similarity=0.121 Sum_probs=68.3
Q ss_pred CccchHHHHHHHHHhCCCC-C----------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CCCC-----HHH
Q 011362 2 GRVSHGFVVLGRILKSCFT-P----------DAVTFTSLIKGLCAESRIMEAAALFTKLRVFG-----CEPD-----VFT 60 (487)
Q Consensus 2 g~~~~A~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-----~~~ 60 (487)
|++++|++.|+++++..+. | ...+|+.+..+|...|++++|+..+++.++.. ..++ ..+
T Consensus 23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a 102 (156)
T d2hr2a1 23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 102 (156)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence 8999999999999875422 1 13578889999999999999999999987541 1121 225
Q ss_pred HHHHHHHHHccCChHHHHHHHHHHHhC
Q 011362 61 YTTLVNGLCRTSHTIVALNLFEEMANG 87 (487)
Q Consensus 61 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 87 (487)
+..+..+|...|++++|+..|++..+.
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 677889999999999999999997764
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.65 E-value=0.00038 Score=51.25 Aligned_cols=104 Identities=14% Similarity=0.011 Sum_probs=71.5
Q ss_pred HhHHHH--HHHHHhcCCHHHHHHHHHHHHhcCCC-CC----------HHHHHHHHHHHHccCChHHHHHHHHHHHhCCCC
Q 011362 24 VTFTSL--IKGLCAESRIMEAAALFTKLRVFGCE-PD----------VFTYTTLVNGLCRTSHTIVALNLFEEMANGNGE 90 (487)
Q Consensus 24 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 90 (487)
.+|..+ ...+...|++++|+..|++.++.... |+ ...|+.+..+|...|++++|+..+++..+..+.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 355555 56677889999999999999875211 11 356888999999999999999999887753210
Q ss_pred Cccccc----cchHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 011362 91 FGVVCE----PNTVTYTTIIDGLCKEGFVDKAKELLLQMKD 127 (487)
Q Consensus 91 ~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 127 (487)
.+...+ .....+..+..+|...|++++|+..|++..+
T Consensus 88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 000001 1123466677788888888888888777654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.62 E-value=0.00025 Score=46.99 Aligned_cols=83 Identities=10% Similarity=-0.038 Sum_probs=60.9
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhh
Q 011362 57 DVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVT 136 (487)
Q Consensus 57 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 136 (487)
+...+..++..+.+.|++++|+..|++..+..+......+....++..+..++.+.|++++|++.++++++.. |-+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 4455667899999999999999999998765322111112235788899999999999999999999998864 224555
Q ss_pred HHHH
Q 011362 137 YTSV 140 (487)
Q Consensus 137 ~~~l 140 (487)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.34 E-value=0.0037 Score=44.20 Aligned_cols=15 Identities=0% Similarity=-0.090 Sum_probs=8.0
Q ss_pred cchHHHHHHHHHhCC
Q 011362 4 VSHGFVVLGRILKSC 18 (487)
Q Consensus 4 ~~~A~~~~~~~~~~~ 18 (487)
+++|++.|++..+.+
T Consensus 9 ~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 9 LKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 445555555555544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.27 E-value=0.0058 Score=43.12 Aligned_cols=110 Identities=14% Similarity=0.025 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh----cC
Q 011362 38 RIMEAAALFTKLRVFGCEPDVFTYTTLVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK----EG 113 (487)
Q Consensus 38 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 113 (487)
|+++|+++|++..+.| .+ .....+. .....+.++|++++++..+.+ ++.....|...|.. ..
T Consensus 8 d~~~A~~~~~kaa~~g-~~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---------~~~a~~~Lg~~y~~g~~~~~ 73 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN-EM--FGCLSLV--SNSQINKQKLFQYLSKACELN---------SGNGCRFLGDFYENGKYVKK 73 (133)
T ss_dssp HHHHHHHHHHHHHHTT-CT--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---------CHHHHHHHHHHHHHCSSSCC
T ss_pred CHHHHHHHHHHHHHCC-Ch--hhhhhhc--cccccCHHHHHHHHhhhhccc---------chhhhhhHHHhhhhccccch
Confidence 6778888888877765 22 2222232 233456777777777776654 34555555555543 34
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHh----cCChhhHHHHHHHHHHcC
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCY----AKDWNEAKRLFIEMMDQG 164 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~ 164 (487)
+.++|.++|++..+.| ++.....|...|.. ..+.++|.++|++..+.|
T Consensus 74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5667777777776655 34445555555544 346666777776666654
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.19 Score=43.69 Aligned_cols=55 Identities=7% Similarity=-0.129 Sum_probs=25.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc
Q 011362 104 TIIDGLCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ 163 (487)
Q Consensus 104 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 163 (487)
..+..+.+.++++..+..+. ..+.+...-...+.+....|+..+|...+..+-..
T Consensus 77 ~~l~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 77 RFVNELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 33444555555544333221 12234444444555555566666655555554443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.86 E-value=0.043 Score=37.16 Aligned_cols=76 Identities=13% Similarity=0.085 Sum_probs=43.0
Q ss_pred CcHHHHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHH
Q 011362 377 PNVVTYSIMIGGLCNDG---QMDKARDLFLDMEENAVVPNV-ITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIV 452 (487)
Q Consensus 377 ~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 452 (487)
|+..+-..+++++.+.. +.++++.+++++.+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+++ +.|+..-.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~--ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc--cCCCcHHH
Confidence 44455555566665543 3456666676666532 1122 4455566667777777777777777776 34554444
Q ss_pred HHH
Q 011362 453 SIV 455 (487)
Q Consensus 453 ~~l 455 (487)
..+
T Consensus 110 ~~L 112 (124)
T d2pqrb1 110 GAL 112 (124)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.095 Score=35.42 Aligned_cols=68 Identities=12% Similarity=0.022 Sum_probs=54.0
Q ss_pred CCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHHHhCC
Q 011362 20 TPDAVTFTSLIKGLCAES---RIMEAAALFTKLRVFGCEPDV-FTYTTLVNGLCRTSHTIVALNLFEEMANGN 88 (487)
Q Consensus 20 ~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 88 (487)
.+++.+--....++.+.. +.++++.+++++.+.+ +.+. ..+..+..+|.+.|++++|.+.++.+.+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 456667777788888765 4568999999998764 3343 567788889999999999999999999965
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.37 E-value=0.21 Score=33.45 Aligned_cols=140 Identities=14% Similarity=0.154 Sum_probs=80.0
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCChhhHHHHHHHHHhCCChHH
Q 011362 109 LCKEGFVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQ-GVQPNVVTFNVIMDELCKNGKMDE 187 (487)
Q Consensus 109 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~ 187 (487)
+...|..++..+++.+..... +..-|+-++--....-+-+-..+.++.+-+. .+.|- .....++.++...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcc---
Confidence 344677788888887776642 4555665665555556666666666554322 11110 111223333333322
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHhHHHHHHHHHHHcCCCCCHhhHHHHHHHHHccCCHhHHHHHHHHHHH
Q 011362 188 ASRLLDLMIQHGVRPDAFTYNTLLDGFCLTGRVNHAKELFVSMESMGCKHTVFSYSILINGYCKNKEIEGALSLYSEMLS 267 (487)
Q Consensus 188 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 267 (487)
+...+...+.....+|+-++-.++++.+.+.+ .+++.....+..+|.+.|...++-+++.+.-+
T Consensus 85 ---------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe 148 (161)
T d1wy6a1 85 ---------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACK 148 (161)
T ss_dssp ---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 23334445566666777777777777765543 56666777777777777777777777777766
Q ss_pred CCCc
Q 011362 268 KGIK 271 (487)
Q Consensus 268 ~~~~ 271 (487)
.|.+
T Consensus 149 ~G~K 152 (161)
T d1wy6a1 149 KGEK 152 (161)
T ss_dssp TTCH
T ss_pred HhHH
Confidence 6654
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.76 E-value=0.33 Score=32.49 Aligned_cols=67 Identities=12% Similarity=0.079 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 011362 379 VVTYSIMIGGLCNDGQMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVM 446 (487)
Q Consensus 379 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 446 (487)
...++..+....++|+-+.-.++++.+.+. -.|++.....+..+|.+.|...++-+++.++-+.|++
T Consensus 86 se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 86 NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 344556677778888888888888887775 4678888888889999999999999999998887753
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.30 E-value=0.54 Score=29.69 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=43.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 011362 394 QMDKARDLFLDMEENAVVPNVITFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVD 457 (487)
Q Consensus 394 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 457 (487)
+.-++.+-++.+....+.|++....+.+++|.+.+++.-|.++++-.+... .++..+|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 444566666777777777888888888888888888888888887776432 344556665554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=92.41 E-value=2.9 Score=35.83 Aligned_cols=370 Identities=9% Similarity=-0.010 Sum_probs=193.3
Q ss_pred HHHHHHccCChHHHHHHHHHHHhCCCCCccccccchHHHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCHhhHHHHH
Q 011362 64 LVNGLCRTSHTIVALNLFEEMANGNGEFGVVCEPNTVTYTTIIDGLCK--EGFVDKAKELLLQMKDKNIKPNVVTYTSVI 141 (487)
Q Consensus 64 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 141 (487)
.+.-..+.|+...+.++...+.. . | ...|-..-..-.. .....+....++.-.. .+.....-...+
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~d-y-------p--L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~--~P~~~~lr~~~l 79 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKD-Y-------P--LYPYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFV 79 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTT-S-------T--THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcC-C-------C--CHHHHHHHHHHhccccCCHHHHHHHHHHCCC--ChhHHHHHHHHH
Confidence 34445678888888888877742 2 2 2233333222222 2234444333332211 111112223345
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCC---
Q 011362 142 RGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIMDELCKNGKMDEASRLLDLMIQHGVRPDAFTYNTLLDGFCLTG--- 218 (487)
Q Consensus 142 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 218 (487)
..+.+.+++...+..+. ..+.+...-...+.+....|+...|...+..+-..|.. .+..+..+...+...|
T Consensus 80 ~~L~~~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~~~lt 153 (450)
T d1qsaa1 80 NELARREDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASGKQD 153 (450)
T ss_dssp HHHHHTTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTTCSC
T ss_pred HHHHhccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-CchHHHHHHHHHHhcCCCC
Confidence 66677888876554332 12334555556777888889988888877766555432 2223333444443333
Q ss_pred ---------------CHhHHHHHHHHHHHcCCCCC-HhhHHHHHHHHHccCCHhHHHHHHHHHHHCCCccChhhHHHHHH
Q 011362 219 ---------------RVNHAKELFVSMESMGCKHT-VFSYSILINGYCKNKEIEGALSLYSEMLSKGIKPDVVIHNTLFV 282 (487)
Q Consensus 219 ---------------~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 282 (487)
++..|..+...+ +++ .......+.... +...+...... . ..+......+..
T Consensus 154 ~~~~~~R~~~~l~~~~~~~a~~l~~~l-----~~~~~~~~~a~~~l~~---~p~~~~~~~~~---~--~~~~~~~~~~~~ 220 (450)
T d1qsaa1 154 PLAYLERIRLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFART---T--GATDFTRQMAAV 220 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHHH---S--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHhhC-----ChhHHHHHHHHHHHHh---ChHhHHHHHhc---C--CCChhhhHHHHH
Confidence 333333222211 111 111222222221 12222221111 1 112222222222
Q ss_pred HHH--hcCCHHHHHHHHHHHHHcCCCCcHHhHHH----HHHHHHhCCCHhHHHHHHHHHHHcCCCCChHhHHHHHHHHHh
Q 011362 283 GLF--EIHQVERAFKLFDEMQRNGVAADTWTYRT----FIDGLCKNGYIVEAVELFHTLRILKCEFDIRAYNSLIDGLCK 356 (487)
Q Consensus 283 ~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 356 (487)
++. ...+.+.+...+......... +...... +.......+..+.+...+....... .+.......+.....
T Consensus 221 ~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~ 297 (450)
T d1qsaa1 221 AFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALG 297 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHH
Confidence 222 245778888888777654322 2222222 2222334566677777777666543 344444444555566
Q ss_pred cCCHHHHHHHHHhccCCCCCCcHHHHHHHHHHHHccCCHHHHHHHHHHHHhC------------CCCCC-----------
Q 011362 357 SGRLEIALELFRSLPCGVLVPNVVTYSIMIGGLCNDGQMDKARDLFLDMEEN------------AVVPN----------- 413 (487)
Q Consensus 357 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------------~~~~~----------- 413 (487)
.+++..+...+..+.... .....-...+.+++...|+.++|...|..+... |.+++
T Consensus 298 ~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~ 376 (450)
T d1qsaa1 298 TGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVD 376 (450)
T ss_dssp HTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCC
T ss_pred cCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHH
Confidence 789999999998887532 222344467788889999999999998886542 21110
Q ss_pred -HH---HHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcccccccccc
Q 011362 414 -VI---TFDMLIRGFIRINEPSKVIELLHKMKEINVMPDASIVSIVVDLLAKNEISLNSLPS 471 (487)
Q Consensus 414 -~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~ 471 (487)
.. .-..-+..+...|....|...+..+... .+......+.....+.|....++..
T Consensus 377 ~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~aI~a 435 (450)
T d1qsaa1 377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLSVQA 435 (450)
T ss_dssp CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHHHHH
Confidence 00 0112345677889999999999888753 3455666777778888887555544
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.28 E-value=2.3 Score=26.80 Aligned_cols=62 Identities=11% Similarity=0.176 Sum_probs=41.7
Q ss_pred ChhHHHHHHHHHHhCCCCCCHhhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCChhhHHHHH
Q 011362 114 FVDKAKELLLQMKDKNIKPNVVTYTSVIRGFCYAKDWNEAKRLFIEMMDQGVQPNVVTFNVIM 176 (487)
Q Consensus 114 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 176 (487)
+.-++.+-+..+......|++....+.+++|.+.+++..|.++|+-.+.. ..++...|..++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil 82 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 82 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence 34456666666666777788888888888888888888888888776543 222344555443
|